[1] "ofn"       "-oTLGG-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/LGG-TP/22553887/LGG-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LGG-TP/22533658/transformed.cor.cli.txt"

nPatients in clinical file=516, in cluster file=513, common to both=513
[1]  49 513
[1] "AMP PEAK  1(1Q22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                         42                         471 
  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                         42                         471 
[1] "AMP PEAK  2(1Q32.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE 
                           43                           470 
  AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE 
                           43                           470 
[1] "AMP PEAK  3(2P24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE 
                           24                           489 
  AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE 
                           24                           489 
[1] "AMP PEAK  4(3Q26.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE 
                            21                            492 
  AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE 
                            21                            492 
[1] "AMP PEAK  5(4Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                         30                         483 
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                         30                         483 
[1] "AMP PEAK  6(7P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE 
                          127                           386 
  AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE 
                          127                           386 
[1] "AMP PEAK  7(7Q31.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE 
                          173                           340 
  AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE 
                          173                           340 
[1] "AMP PEAK  8(7Q32.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE 
                          181                           332 
  AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE 
                          181                           332 
[1] "AMP PEAK  9(8Q24.13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE 
                            99                            414 
  AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE 
                            99                            414 
[1] "AMP PEAK 10(9Q34.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE 
                           46                           467 
  AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE 
                           46                           467 
[1] "AMP PEAK 11(10P15.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE 
                            71                            442 
  AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE 
                            71                            442 
[1] "AMP PEAK 12(11Q24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE 
                            87                            426 
  AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE 
                            87                            426 
[1] "AMP PEAK 13(12P13.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE 
                             72                             441 
  AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE 
                             72                             441 
[1] "AMP PEAK 14(12Q14.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE 
                            37                            476 
  AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE 
                            37                            476 
[1] "AMP PEAK 15(13Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE 
                          22                          491 
  AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE 
                          22                          491 
[1] "AMP PEAK 16(15Q26.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE 
                            19                            494 
  AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE 
                            19                            494 
[1] "AMP PEAK 17(17Q25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE 
                            44                            469 
  AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE 
                            44                            469 
[1] "AMP PEAK 18(19P13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE 
                           129                            384 
  AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE 
                           129                            384 
[1] "AMP PEAK 19(XP11.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(XP11.22) MUTATED AMP PEAK 19(XP11.22) WILD-TYPE 
                            48                            465 
  AMP PEAK 19(XP11.22) MUTATED AMP PEAK 19(XP11.22) WILD-TYPE 
                            48                            465 
[1] "AMP PEAK 20(XP11.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE 
                            63                            450 
  AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE 
                            63                            450 
[1] "DEL PEAK  1(1P36.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                           206                            307 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                           206                            307 
[1] "DEL PEAK  2(1P32.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE 
                          196                           317 
  DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE 
                          196                           317 
[1] "DEL PEAK  3(1Q43) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE 
                         36                         477 
  DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE 
                         36                         477 
[1] "DEL PEAK  4(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           77                           436 
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           77                           436 
[1] "DEL PEAK  5(3P21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE 
                            49                            464 
  DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE 
                            49                            464 
[1] "DEL PEAK  6(3Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3Q13.31) MUTATED DEL PEAK  6(3Q13.31) WILD-TYPE 
                            39                            474 
  DEL PEAK  6(3Q13.31) MUTATED DEL PEAK  6(3Q13.31) WILD-TYPE 
                            39                            474 
[1] "DEL PEAK  7(3Q29) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE 
                         47                         466 
  DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE 
                         47                         466 
[1] "DEL PEAK  8(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE 
                          137                           376 
  DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE 
                          137                           376 
[1] "DEL PEAK  9(5P15.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(5P15.33) MUTATED DEL PEAK  9(5P15.33) WILD-TYPE 
                            50                            463 
  DEL PEAK  9(5P15.33) MUTATED DEL PEAK  9(5P15.33) WILD-TYPE 
                            50                            463 
[1] "DEL PEAK 10(5Q34) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(5Q34) MUTATED DEL PEAK 10(5Q34) WILD-TYPE 
                         64                         449 
  DEL PEAK 10(5Q34) MUTATED DEL PEAK 10(5Q34) WILD-TYPE 
                         64                         449 
[1] "DEL PEAK 11(6P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE 
                           50                           463 
  DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE 
                           50                           463 
[1] "DEL PEAK 12(6Q22.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(6Q22.31) MUTATED DEL PEAK 12(6Q22.31) WILD-TYPE 
                            78                            435 
  DEL PEAK 12(6Q22.31) MUTATED DEL PEAK 12(6Q22.31) WILD-TYPE 
                            78                            435 
[1] "DEL PEAK 13(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                         82                         431 
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                         82                         431 
[1] "DEL PEAK 14(7P22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE 
                           23                           490 
  DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE 
                           23                           490 
[1] "DEL PEAK 15(8Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(8Q24.3) MUTATED DEL PEAK 15(8Q24.3) WILD-TYPE 
                           29                           484 
  DEL PEAK 15(8Q24.3) MUTATED DEL PEAK 15(8Q24.3) WILD-TYPE 
                           29                           484 
[1] "DEL PEAK 16(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE 
                        150                         363 
  DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE 
                        150                         363 
[1] "DEL PEAK 17(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE 
                          176                           337 
  DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE 
                          176                           337 
[1] "DEL PEAK 18(10Q26.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE 
                           151                            362 
  DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE 
                           151                            362 
[1] "DEL PEAK 19(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(11P15.5) MUTATED DEL PEAK 19(11P15.5) WILD-TYPE 
                           104                            409 
  DEL PEAK 19(11P15.5) MUTATED DEL PEAK 19(11P15.5) WILD-TYPE 
                           104                            409 
[1] "DEL PEAK 20(11P15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(11P15.1) MUTATED DEL PEAK 20(11P15.1) WILD-TYPE 
                            72                            441 
  DEL PEAK 20(11P15.1) MUTATED DEL PEAK 20(11P15.1) WILD-TYPE 
                            72                            441 
[1] "DEL PEAK 21(12P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE 
                            38                            475 
  DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE 
                            38                            475 
[1] "DEL PEAK 22(12Q12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(12Q12) MUTATED DEL PEAK 22(12Q12) WILD-TYPE 
                          72                          441 
  DEL PEAK 22(12Q12) MUTATED DEL PEAK 22(12Q12) WILD-TYPE 
                          72                          441 
[1] "DEL PEAK 23(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE 
                           144                            369 
  DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE 
                           144                            369 
[1] "DEL PEAK 24(13Q34) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(13Q34) MUTATED DEL PEAK 24(13Q34) WILD-TYPE 
                         110                          403 
  DEL PEAK 24(13Q34) MUTATED DEL PEAK 24(13Q34) WILD-TYPE 
                         110                          403 
[1] "DEL PEAK 25(14Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(14Q24.3) MUTATED DEL PEAK 25(14Q24.3) WILD-TYPE 
                           122                            391 
  DEL PEAK 25(14Q24.3) MUTATED DEL PEAK 25(14Q24.3) WILD-TYPE 
                           122                            391 
[1] "DEL PEAK 26(18Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(18Q23) MUTATED DEL PEAK 26(18Q23) WILD-TYPE 
                          78                          435 
  DEL PEAK 26(18Q23) MUTATED DEL PEAK 26(18Q23) WILD-TYPE 
                          78                          435 
[1] "DEL PEAK 27(19Q13.42) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(19Q13.42) MUTATED DEL PEAK 27(19Q13.42) WILD-TYPE 
                            278                             235 
  DEL PEAK 27(19Q13.42) MUTATED DEL PEAK 27(19Q13.42) WILD-TYPE 
                            278                             235 
[1] "DEL PEAK 28(22Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE 
                             77                             436 
  DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE 
                             77                             436 
[1] "DEL PEAK 29(XQ21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE 
                           78                           435 
  DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE 
                           78                           435 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 513 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 513 columns, 0 survival variables, and 12 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
MRNA_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1Q22) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q22) MUTATED        1      1      0
  AMP PEAK  1(1Q22) WILD-TYPE      8      9      8
D1V1, multiclass
[1] "Remove cluster labels:"    "AMP PEAK  1(1Q22) MUTATED"
clus
  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                          2                          25 
                 TCGA-CS-4942                  TCGA-CS-4943 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-CS-4944                  TCGA-CS-5390 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-CS-5394                  TCGA-CS-5395 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-CS-5396                  TCGA-DB-5270 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DB-5273                  TCGA-DB-5274 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DB-5275                  TCGA-DB-5276 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DB-5277                  TCGA-DB-5278 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DB-5280                  TCGA-DB-5281 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DH-5140                  TCGA-DH-5141 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DH-5142                  TCGA-DH-5143 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DH-5144                  TCGA-E1-5303 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-E1-5311                  TCGA-E1-5318 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-E1-5322 
"AMP PEAK  1(1Q22) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED        1      1      0      0
  AMP PEAK  1(1Q22) WILD-TYPE      6      6      7      6
D1V2, multiclass
[1] "Remove cluster labels:"    "AMP PEAK  1(1Q22) MUTATED"
clus
  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                          2                          25 
                 TCGA-CS-4942                  TCGA-CS-4943 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-CS-4944                  TCGA-CS-5390 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-CS-5394                  TCGA-CS-5395 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-CS-5396                  TCGA-DB-5270 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DB-5273                  TCGA-DB-5274 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DB-5275                  TCGA-DB-5276 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DB-5277                  TCGA-DB-5278 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DB-5280                  TCGA-DB-5281 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DH-5140                  TCGA-DH-5141 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DH-5142                  TCGA-DH-5143 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DH-5144                  TCGA-E1-5303 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-E1-5311                  TCGA-E1-5318 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-E1-5322 
"AMP PEAK  1(1Q22) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q22) MUTATED       15     20      7
  AMP PEAK  1(1Q22) WILD-TYPE    212     91    168
D1V3, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                        15                         212
  CLUS_2                        20                          91
  CLUS_3                         7                         168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED       16     16      8      2
  AMP PEAK  1(1Q22) WILD-TYPE    193    118    149     11
D1V4, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                        16                         193
  CLUS_2                        16                         118
  CLUS_3                         8                         149
  CLUS_4                         2                          11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED        8     11      4      7
  AMP PEAK  1(1Q22) WILD-TYPE     83     84    121    108
D1V5, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         8                          83
  CLUS_2                        11                          84
  CLUS_3                         4                         121
  CLUS_4                         7                         108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q22) MUTATED        6      9     15
  AMP PEAK  1(1Q22) WILD-TYPE     77    149    170
D1V6, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         6                          77
  CLUS_2                         9                         149
  CLUS_3                        15                         170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1Q22) MUTATED        8     20      3      9      2
  AMP PEAK  1(1Q22) WILD-TYPE    122     95    102    124     28
D1V7, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         8                         122
  CLUS_2                        20                          95
  CLUS_3                         3                         102
  CLUS_4                         9                         124
  CLUS_5                         2                          28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  1(1Q22) MUTATED       10     11      3      3      4      7      4
  AMP PEAK  1(1Q22) WILD-TYPE    125     60     33     65     86     34     68
D1V8, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                        10                         125
  CLUS_2                        11                          60
  CLUS_3                         3                          33
  CLUS_4                         3                          65
  CLUS_5                         4                          86
  CLUS_6                         7                          34
  CLUS_7                         4                          68
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED       16      9      4     13
  AMP PEAK  1(1Q22) WILD-TYPE    124     98     78    167
D1V9, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                        16                         124
  CLUS_2                         9                          98
  CLUS_3                         4                          78
  CLUS_4                        13                         167
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q22) MUTATED       14     14     14
  AMP PEAK  1(1Q22) WILD-TYPE    208    170     89
D1V10, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                        14                         208
  CLUS_2                        14                         170
  CLUS_3                        14                          89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED       11     16      1     14
  AMP PEAK  1(1Q22) WILD-TYPE    116    103    104    140
D1V11, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                        11                         116
  CLUS_2                        16                         103
  CLUS_3                         1                         104
  CLUS_4                        14                         140
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q22) MUTATED        9      7      8      3      8      7
  AMP PEAK  1(1Q22) WILD-TYPE     90     70    110     53     55     85
D1V12, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         9                          90
  CLUS_2                         7                          70
  CLUS_3                         8                         110
  CLUS_4                         3                          53
  CLUS_5                         8                          55
  CLUS_6                         7                          85
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q32.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED        0      0      2
  AMP PEAK  2(1Q32.1) WILD-TYPE      9     10      6
D2V1, multiclass
[1] "Remove cluster labels:"      "AMP PEAK  2(1Q32.1) MUTATED"
clus
  AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE 
                            2                            25 
                   TCGA-CS-4942                    TCGA-CS-4943 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-CS-4944                    TCGA-CS-5390 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-CS-5394                    TCGA-CS-5396 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DB-5270                    TCGA-DB-5273 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DB-5274                    TCGA-DB-5275 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DB-5276                    TCGA-DB-5278 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DB-5280                    TCGA-DB-5281 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DH-5140                    TCGA-DH-5141 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DH-5142                    TCGA-DH-5143 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DH-5144                    TCGA-E1-5302 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-E1-5303                    TCGA-E1-5304 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-E1-5311                    TCGA-E1-5318 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-E1-5322 
"AMP PEAK  2(1Q32.1) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q32.1) MUTATED        1      1      0      0
  AMP PEAK  2(1Q32.1) WILD-TYPE      6      6      7      6
D2V2, multiclass
[1] "Remove cluster labels:"      "AMP PEAK  2(1Q32.1) MUTATED"
clus
  AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE 
                            2                            25 
                   TCGA-CS-4942                    TCGA-CS-4943 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-CS-4944                    TCGA-CS-5390 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-CS-5394                    TCGA-CS-5396 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DB-5270                    TCGA-DB-5273 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DB-5274                    TCGA-DB-5275 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DB-5276                    TCGA-DB-5278 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DB-5280                    TCGA-DB-5281 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DH-5140                    TCGA-DH-5141 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DH-5142                    TCGA-DH-5143 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DH-5144                    TCGA-E1-5302 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-E1-5303                    TCGA-E1-5304 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-E1-5311                    TCGA-E1-5318 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-E1-5322 
"AMP PEAK  2(1Q32.1) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED       12     26      5
  AMP PEAK  2(1Q32.1) WILD-TYPE    215     85    170
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          12                           215
  CLUS_2                          26                            85
  CLUS_3                           5                           170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q32.1) MUTATED        8     27      6      2
  AMP PEAK  2(1Q32.1) WILD-TYPE    201    107    151     11
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           8                           201
  CLUS_2                          27                           107
  CLUS_3                           6                           151
  CLUS_4                           2                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q32.1) MUTATED        7     10      5      9
  AMP PEAK  2(1Q32.1) WILD-TYPE     84     85    120    106
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           7                            84
  CLUS_2                          10                            85
  CLUS_3                           5                           120
  CLUS_4                           9                           106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED        4     10     17
  AMP PEAK  2(1Q32.1) WILD-TYPE     79    148    168
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           4                            79
  CLUS_2                          10                           148
  CLUS_3                          17                           168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q32.1) MUTATED        2     26      1     12      2
  AMP PEAK  2(1Q32.1) WILD-TYPE    128     89    104    121     28
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           2                           128
  CLUS_2                          26                            89
  CLUS_3                           1                           104
  CLUS_4                          12                           121
  CLUS_5                           2                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q32.1) MUTATED        3     20      3      6      2      4
  AMP PEAK  2(1Q32.1) WILD-TYPE    132     51     33     62     88     37
                               vv
clus                            CLUS_7
  AMP PEAK  2(1Q32.1) MUTATED        5
  AMP PEAK  2(1Q32.1) WILD-TYPE     67
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           3                           132
  CLUS_2                          20                            51
  CLUS_3                           3                            33
  CLUS_4                           6                            62
  CLUS_5                           2                            88
  CLUS_6                           4                            37
  CLUS_7                           5                            67
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q32.1) MUTATED       18      6      4     15
  AMP PEAK  2(1Q32.1) WILD-TYPE    122    101     78    165
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          18                           122
  CLUS_2                           6                           101
  CLUS_3                           4                            78
  CLUS_4                          15                           165
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED        8     13     22
  AMP PEAK  2(1Q32.1) WILD-TYPE    214    171     81
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           8                           214
  CLUS_2                          13                           171
  CLUS_3                          22                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q32.1) MUTATED        9     18      2     14
  AMP PEAK  2(1Q32.1) WILD-TYPE    118    101    103    140
D2V11, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           9                           118
  CLUS_2                          18                           101
  CLUS_3                           2                           103
  CLUS_4                          14                           140
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q32.1) MUTATED        5      3     10      1     18      6
  AMP PEAK  2(1Q32.1) WILD-TYPE     94     74    108     55     45     86
D2V12, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           5                            94
  CLUS_2                           3                            74
  CLUS_3                          10                           108
  CLUS_4                           1                            55
  CLUS_5                          18                            45
  CLUS_6                           6                            86
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(2P24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(2P24.3) MUTATED        0      2      1
  AMP PEAK  3(2P24.3) WILD-TYPE      9      8      7
D3V1, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           0                             9
  CLUS_2                           2                             8
  CLUS_3                           1                             7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(2P24.3) MUTATED        0      2      1      0
  AMP PEAK  3(2P24.3) WILD-TYPE      7      5      6      6
D3V2, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           0                             7
  CLUS_2                           2                             5
  CLUS_3                           1                             6
  CLUS_4                           0                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(2P24.3) MUTATED        9     12      3
  AMP PEAK  3(2P24.3) WILD-TYPE    218     99    172
D3V3, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           9                           218
  CLUS_2                          12                            99
  CLUS_3                           3                           172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(2P24.3) MUTATED       10      9      4      1
  AMP PEAK  3(2P24.3) WILD-TYPE    199    125    153     12
D3V4, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                          10                           199
  CLUS_2                           9                           125
  CLUS_3                           4                           153
  CLUS_4                           1                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(2P24.3) MUTATED        3      8      3      2
  AMP PEAK  3(2P24.3) WILD-TYPE     88     87    122    113
D3V5, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           3                            88
  CLUS_2                           8                            87
  CLUS_3                           3                           122
  CLUS_4                           2                           113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(2P24.3) MUTATED        4      2     10
  AMP PEAK  3(2P24.3) WILD-TYPE     79    156    175
D3V6, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           4                            79
  CLUS_2                           2                           156
  CLUS_3                          10                           175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(2P24.3) MUTATED        4     12      2      6      0
  AMP PEAK  3(2P24.3) WILD-TYPE    126    103    103    127     30
D3V7, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           4                           126
  CLUS_2                          12                           103
  CLUS_3                           2                           103
  CLUS_4                           6                           127
  CLUS_5                           0                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(2P24.3) MUTATED        3      7      1      6      2      5
  AMP PEAK  3(2P24.3) WILD-TYPE    132     64     35     62     88     36
                               vv
clus                            CLUS_7
  AMP PEAK  3(2P24.3) MUTATED        0
  AMP PEAK  3(2P24.3) WILD-TYPE     72
D3V8, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           3                           132
  CLUS_2                           7                            64
  CLUS_3                           1                            35
  CLUS_4                           6                            62
  CLUS_5                           2                            88
  CLUS_6                           5                            36
  CLUS_7                           0                            72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(2P24.3) MUTATED        7      7      3      7
  AMP PEAK  3(2P24.3) WILD-TYPE    133    100     79    173
D3V9, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           7                           133
  CLUS_2                           7                           100
  CLUS_3                           3                            79
  CLUS_4                           7                           173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(2P24.3) MUTATED        9      5     10
  AMP PEAK  3(2P24.3) WILD-TYPE    213    179     93
D3V10, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           9                           213
  CLUS_2                           5                           179
  CLUS_3                          10                            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(2P24.3) MUTATED        3     15      1      5
  AMP PEAK  3(2P24.3) WILD-TYPE    124    104    104    149
D3V11, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           3                           124
  CLUS_2                          15                           104
  CLUS_3                           1                           104
  CLUS_4                           5                           149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(2P24.3) MUTATED        4      7      2      1      7      3
  AMP PEAK  3(2P24.3) WILD-TYPE     95     70    116     55     56     89
D3V12, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           4                            95
  CLUS_2                           7                            70
  CLUS_3                           2                           116
  CLUS_4                           1                            55
  CLUS_5                           7                            56
  CLUS_6                           3                            89
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(3Q26.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.33) MUTATED        1      1      1
  AMP PEAK  4(3Q26.33) WILD-TYPE      8      9      7
D4V1, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            1                              9
  CLUS_3                            1                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.33) MUTATED        2      1      0      0
  AMP PEAK  4(3Q26.33) WILD-TYPE      5      6      7      6
D4V2, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                            2                              5
  CLUS_2                            1                              6
  CLUS_3                            0                              7
  CLUS_4                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.33) MUTATED        2     19      0
  AMP PEAK  4(3Q26.33) WILD-TYPE    225     92    175
D4V3, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                            2                            225
  CLUS_2                           19                             92
  CLUS_3                            0                            175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.33) MUTATED        7     10      2      2
  AMP PEAK  4(3Q26.33) WILD-TYPE    202    124    155     11
D4V4, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                            7                            202
  CLUS_2                           10                            124
  CLUS_3                            2                            155
  CLUS_4                            2                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.33) MUTATED        2      8      3      1
  AMP PEAK  4(3Q26.33) WILD-TYPE     89     87    122    114
D4V5, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                            2                             89
  CLUS_2                            8                             87
  CLUS_3                            3                            122
  CLUS_4                            1                            114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.33) MUTATED        1      4      9
  AMP PEAK  4(3Q26.33) WILD-TYPE     82    154    176
D4V6, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                            1                             82
  CLUS_2                            4                            154
  CLUS_3                            9                            176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(3Q26.33) MUTATED        5     13      2      1      0
  AMP PEAK  4(3Q26.33) WILD-TYPE    125    102    103    132     30
D4V7, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                            5                            125
  CLUS_2                           13                            102
  CLUS_3                            2                            103
  CLUS_4                            1                            132
  CLUS_5                            0                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3Q26.33) MUTATED        4      9      1      2      0      4
  AMP PEAK  4(3Q26.33) WILD-TYPE    131     62     35     66     90     37
                                vv
clus                             CLUS_7
  AMP PEAK  4(3Q26.33) MUTATED        1
  AMP PEAK  4(3Q26.33) WILD-TYPE     71
D4V8, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                            4                            131
  CLUS_2                            9                             62
  CLUS_3                            1                             35
  CLUS_4                            2                             66
  CLUS_5                            0                             90
  CLUS_6                            4                             37
  CLUS_7                            1                             71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.33) MUTATED       11      8      1      1
  AMP PEAK  4(3Q26.33) WILD-TYPE    129     99     81    179
D4V9, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                           11                            129
  CLUS_2                            8                             99
  CLUS_3                            1                             81
  CLUS_4                            1                            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.33) MUTATED        9      3      9
  AMP PEAK  4(3Q26.33) WILD-TYPE    213    181     94
D4V10, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                            9                            213
  CLUS_2                            3                            181
  CLUS_3                            9                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.33) MUTATED        4     13      1      3
  AMP PEAK  4(3Q26.33) WILD-TYPE    123    106    104    151
D4V11, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                            4                            123
  CLUS_2                           13                            106
  CLUS_3                            1                            104
  CLUS_4                            3                            151
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3Q26.33) MUTATED        6      3      1      0      8      3
  AMP PEAK  4(3Q26.33) WILD-TYPE     93     74    117     56     55     89
D4V12, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                            6                             93
  CLUS_2                            3                             74
  CLUS_3                            1                            117
  CLUS_4                            0                             56
  CLUS_5                            8                             55
  CLUS_6                            3                             89
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(4Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED        1      1      1
  AMP PEAK  5(4Q12) WILD-TYPE      8      9      7
D5V1, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         1                           8
  CLUS_2                         1                           9
  CLUS_3                         1                           7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED        0      3      0      0
  AMP PEAK  5(4Q12) WILD-TYPE      7      4      7      6
D5V2, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         0                           7
  CLUS_2                         3                           4
  CLUS_3                         0                           7
  CLUS_4                         0                           6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED       13     15      2
  AMP PEAK  5(4Q12) WILD-TYPE    214     96    173
D5V3, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        13                         214
  CLUS_2                        15                          96
  CLUS_3                         2                         173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED       13     10      1      6
  AMP PEAK  5(4Q12) WILD-TYPE    196    124    156      7
D5V4, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        13                         196
  CLUS_2                        10                         124
  CLUS_3                         1                         156
  CLUS_4                         6                           7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED        3     14      1      7
  AMP PEAK  5(4Q12) WILD-TYPE     88     81    124    108
D5V5, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         3                          88
  CLUS_2                        14                          81
  CLUS_3                         1                         124
  CLUS_4                         7                         108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED        2     10     13
  AMP PEAK  5(4Q12) WILD-TYPE     81    148    172
D5V6, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         2                          81
  CLUS_2                        10                         148
  CLUS_3                        13                         172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(4Q12) MUTATED        5     18      0      6      1
  AMP PEAK  5(4Q12) WILD-TYPE    125     97    105    127     29
D5V7, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         5                         125
  CLUS_2                        18                          97
  CLUS_3                         0                         105
  CLUS_4                         6                         127
  CLUS_5                         1                          29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  5(4Q12) MUTATED        5      8      0      2      0     11      4
  AMP PEAK  5(4Q12) WILD-TYPE    130     63     36     66     90     30     68
D5V8, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         5                         130
  CLUS_2                         8                          63
  CLUS_3                         0                          36
  CLUS_4                         2                          66
  CLUS_5                         0                          90
  CLUS_6                        11                          30
  CLUS_7                         4                          68
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED        6     15      2      7
  AMP PEAK  5(4Q12) WILD-TYPE    134     92     80    173
D5V9, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         6                         134
  CLUS_2                        15                          92
  CLUS_3                         2                          80
  CLUS_4                         7                         173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED        7      7     16
  AMP PEAK  5(4Q12) WILD-TYPE    215    177     87
D5V10, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         7                         215
  CLUS_2                         7                         177
  CLUS_3                        16                          87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED        5     16      2      7
  AMP PEAK  5(4Q12) WILD-TYPE    122    103    103    147
D5V11, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         5                         122
  CLUS_2                        16                         103
  CLUS_3                         2                         103
  CLUS_4                         7                         147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(4Q12) MUTATED        3     12      5      0      7      3
  AMP PEAK  5(4Q12) WILD-TYPE     96     65    113     56     56     89
D5V12, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         3                          96
  CLUS_2                        12                          65
  CLUS_3                         5                         113
  CLUS_4                         0                          56
  CLUS_5                         7                          56
  CLUS_6                         3                          89
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(7P11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P11.2) MUTATED        3      2      2
  AMP PEAK  6(7P11.2) WILD-TYPE      6      8      6
D6V1, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                           2                             8
  CLUS_3                           2                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7P11.2) MUTATED        2      3      1      1
  AMP PEAK  6(7P11.2) WILD-TYPE      5      4      6      5
D6V2, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                           2                             5
  CLUS_2                           3                             4
  CLUS_3                           1                             6
  CLUS_4                           1                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P11.2) MUTATED       46     72      9
  AMP PEAK  6(7P11.2) WILD-TYPE    181     39    166
D6V3, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          46                           181
  CLUS_2                          72                            39
  CLUS_3                           9                           166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7P11.2) MUTATED       39     72     14      2
  AMP PEAK  6(7P11.2) WILD-TYPE    170     62    143     11
D6V4, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          39                           170
  CLUS_2                          72                            62
  CLUS_3                          14                           143
  CLUS_4                           2                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7P11.2) MUTATED       23     36     20     22
  AMP PEAK  6(7P11.2) WILD-TYPE     68     59    105     93
D6V5, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          23                            68
  CLUS_2                          36                            59
  CLUS_3                          20                           105
  CLUS_4                          22                            93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P11.2) MUTATED       12     31     58
  AMP PEAK  6(7P11.2) WILD-TYPE     71    127    127
D6V6, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          12                            71
  CLUS_2                          31                           127
  CLUS_3                          58                           127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(7P11.2) MUTATED       22     66      9     25      5
  AMP PEAK  6(7P11.2) WILD-TYPE    108     49     96    108     25
D6V7, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          22                           108
  CLUS_2                          66                            49
  CLUS_3                           9                            96
  CLUS_4                          25                           108
  CLUS_5                           5                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(7P11.2) MUTATED       19     57      3     26      7      9
  AMP PEAK  6(7P11.2) WILD-TYPE    116     14     33     42     83     32
                               vv
clus                            CLUS_7
  AMP PEAK  6(7P11.2) MUTATED        6
  AMP PEAK  6(7P11.2) WILD-TYPE     66
D6V8, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          19                           116
  CLUS_2                          57                            14
  CLUS_3                           3                            33
  CLUS_4                          26                            42
  CLUS_5                           7                            83
  CLUS_6                           9                            32
  CLUS_7                           6                            66
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7P11.2) MUTATED       45     37     11     32
  AMP PEAK  6(7P11.2) WILD-TYPE     95     70     71    148
D6V9, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          45                            95
  CLUS_2                          37                            70
  CLUS_3                          11                            71
  CLUS_4                          32                           148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P11.2) MUTATED       36     28     61
  AMP PEAK  6(7P11.2) WILD-TYPE    186    156     42
D6V10, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          36                           186
  CLUS_2                          28                           156
  CLUS_3                          61                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7P11.2) MUTATED       33     50      9     32
  AMP PEAK  6(7P11.2) WILD-TYPE     94     69     96    122
D6V11, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          33                            94
  CLUS_2                          50                            69
  CLUS_3                           9                            96
  CLUS_4                          32                           122
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(7P11.2) MUTATED       15     12     20      7     53     17
  AMP PEAK  6(7P11.2) WILD-TYPE     84     65     98     49     10     75
D6V12, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          15                            84
  CLUS_2                          12                            65
  CLUS_3                          20                            98
  CLUS_4                           7                            49
  CLUS_5                          53                            10
  CLUS_6                          17                            75
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(7Q31.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7Q31.2) MUTATED        3      3      2
  AMP PEAK  7(7Q31.2) WILD-TYPE      6      7      6
D7V1, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                           3                             7
  CLUS_3                           2                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7Q31.2) MUTATED        3      2      2      1
  AMP PEAK  7(7Q31.2) WILD-TYPE      4      5      5      5
D7V2, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                           3                             4
  CLUS_2                           2                             5
  CLUS_3                           2                             5
  CLUS_4                           1                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7Q31.2) MUTATED       69     79     25
  AMP PEAK  7(7Q31.2) WILD-TYPE    158     32    150
D7V3, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          69                           158
  CLUS_2                          79                            32
  CLUS_3                          25                           150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7Q31.2) MUTATED       74     68     28      3
  AMP PEAK  7(7Q31.2) WILD-TYPE    135     66    129     10
D7V4, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          74                           135
  CLUS_2                          68                            66
  CLUS_3                          28                           129
  CLUS_4                           3                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7Q31.2) MUTATED       31     39     32     35
  AMP PEAK  7(7Q31.2) WILD-TYPE     60     56     93     80
D7V5, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          31                            60
  CLUS_2                          39                            56
  CLUS_3                          32                            93
  CLUS_4                          35                            80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7Q31.2) MUTATED       21     48     68
  AMP PEAK  7(7Q31.2) WILD-TYPE     62    110    117
D7V6, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          21                            62
  CLUS_2                          48                           110
  CLUS_3                          68                           117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(7Q31.2) MUTATED       47     64     15     39      8
  AMP PEAK  7(7Q31.2) WILD-TYPE     83     51     90     94     22
D7V7, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          47                            83
  CLUS_2                          64                            51
  CLUS_3                          15                            90
  CLUS_4                          39                            94
  CLUS_5                           8                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(7Q31.2) MUTATED       44     53      6     32     14      9
  AMP PEAK  7(7Q31.2) WILD-TYPE     91     18     30     36     76     32
                               vv
clus                            CLUS_7
  AMP PEAK  7(7Q31.2) MUTATED       15
  AMP PEAK  7(7Q31.2) WILD-TYPE     57
D7V8, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          44                            91
  CLUS_2                          53                            18
  CLUS_3                           6                            30
  CLUS_4                          32                            36
  CLUS_5                          14                            76
  CLUS_6                           9                            32
  CLUS_7                          15                            57
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7Q31.2) MUTATED       56     44     19     52
  AMP PEAK  7(7Q31.2) WILD-TYPE     84     63     63    128
D7V9, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          56                            84
  CLUS_2                          44                            63
  CLUS_3                          19                            63
  CLUS_4                          52                           128
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7Q31.2) MUTATED       64     48     59
  AMP PEAK  7(7Q31.2) WILD-TYPE    158    136     44
D7V10, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          64                           158
  CLUS_2                          48                           136
  CLUS_3                          59                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7Q31.2) MUTATED       43     55     21     51
  AMP PEAK  7(7Q31.2) WILD-TYPE     84     64     84    103
D7V11, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          43                            84
  CLUS_2                          55                            64
  CLUS_3                          21                            84
  CLUS_4                          51                           103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(7Q31.2) MUTATED       27     18     32      9     49     35
  AMP PEAK  7(7Q31.2) WILD-TYPE     72     59     86     47     14     57
D7V12, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          27                            72
  CLUS_2                          18                            59
  CLUS_3                          32                            86
  CLUS_4                           9                            47
  CLUS_5                          49                            14
  CLUS_6                          35                            57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(7Q32.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7Q32.3) MUTATED        3      3      3
  AMP PEAK  8(7Q32.3) WILD-TYPE      6      7      5
D8V1, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                           3                             7
  CLUS_3                           3                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7Q32.3) MUTATED        3      2      2      2
  AMP PEAK  8(7Q32.3) WILD-TYPE      4      5      5      4
D8V2, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                           3                             4
  CLUS_2                           2                             5
  CLUS_3                           2                             5
  CLUS_4                           2                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7Q32.3) MUTATED       75     80     26
  AMP PEAK  8(7Q32.3) WILD-TYPE    152     31    149
D8V3, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                          75                           152
  CLUS_2                          80                            31
  CLUS_3                          26                           149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7Q32.3) MUTATED       80     69     29      3
  AMP PEAK  8(7Q32.3) WILD-TYPE    129     65    128     10
D8V4, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                          80                           129
  CLUS_2                          69                            65
  CLUS_3                          29                           128
  CLUS_4                           3                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7Q32.3) MUTATED       34     40     35     37
  AMP PEAK  8(7Q32.3) WILD-TYPE     57     55     90     78
D8V5, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                          34                            57
  CLUS_2                          40                            55
  CLUS_3                          35                            90
  CLUS_4                          37                            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7Q32.3) MUTATED       24     49     73
  AMP PEAK  8(7Q32.3) WILD-TYPE     59    109    112
D8V6, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                          24                            59
  CLUS_2                          49                           109
  CLUS_3                          73                           112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(7Q32.3) MUTATED       51     64     16     42      8
  AMP PEAK  8(7Q32.3) WILD-TYPE     79     51     89     91     22
D8V7, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                          51                            79
  CLUS_2                          64                            51
  CLUS_3                          16                            89
  CLUS_4                          42                            91
  CLUS_5                           8                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(7Q32.3) MUTATED       47     53      6     36     15      9
  AMP PEAK  8(7Q32.3) WILD-TYPE     88     18     30     32     75     32
                               vv
clus                            CLUS_7
  AMP PEAK  8(7Q32.3) MUTATED       15
  AMP PEAK  8(7Q32.3) WILD-TYPE     57
D8V8, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                          47                            88
  CLUS_2                          53                            18
  CLUS_3                           6                            30
  CLUS_4                          36                            32
  CLUS_5                          15                            75
  CLUS_6                           9                            32
  CLUS_7                          15                            57
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7Q32.3) MUTATED       58     44     21     56
  AMP PEAK  8(7Q32.3) WILD-TYPE     82     63     61    124
D8V9, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                          58                            82
  CLUS_2                          44                            63
  CLUS_3                          21                            61
  CLUS_4                          56                           124
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7Q32.3) MUTATED       67     52     60
  AMP PEAK  8(7Q32.3) WILD-TYPE    155    132     43
D8V10, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                          67                           155
  CLUS_2                          52                           132
  CLUS_3                          60                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7Q32.3) MUTATED       45     57     23     53
  AMP PEAK  8(7Q32.3) WILD-TYPE     82     62     82    101
D8V11, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                          45                            82
  CLUS_2                          57                            62
  CLUS_3                          23                            82
  CLUS_4                          53                           101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(7Q32.3) MUTATED       31     19     34     10     49     35
  AMP PEAK  8(7Q32.3) WILD-TYPE     68     58     84     46     14     57
D8V12, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                          31                            68
  CLUS_2                          19                            58
  CLUS_3                          34                            84
  CLUS_4                          10                            46
  CLUS_5                          49                            14
  CLUS_6                          35                            57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(8Q24.13) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q24.13) MUTATED        2      1      3
  AMP PEAK  9(8Q24.13) WILD-TYPE      7      9      5
D9V1, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            1                              9
  CLUS_3                            3                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q24.13) MUTATED        1      3      0      2
  AMP PEAK  9(8Q24.13) WILD-TYPE      6      4      7      4
D9V2, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                            1                              6
  CLUS_2                            3                              4
  CLUS_3                            0                              7
  CLUS_4                            2                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q24.13) MUTATED       65     26      8
  AMP PEAK  9(8Q24.13) WILD-TYPE    162     85    167
D9V3, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                           65                            162
  CLUS_2                           26                             85
  CLUS_3                            8                            167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q24.13) MUTATED       79      8     10      2
  AMP PEAK  9(8Q24.13) WILD-TYPE    130    126    147     11
D9V4, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                           79                            130
  CLUS_2                            8                            126
  CLUS_3                           10                            147
  CLUS_4                            2                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q24.13) MUTATED       20     23     25     16
  AMP PEAK  9(8Q24.13) WILD-TYPE     71     72    100     99
D9V5, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                           20                             71
  CLUS_2                           23                             72
  CLUS_3                           25                            100
  CLUS_4                           16                             99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q24.13) MUTATED       20     26     38
  AMP PEAK  9(8Q24.13) WILD-TYPE     63    132    147
D9V6, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                           20                             63
  CLUS_2                           26                            132
  CLUS_3                           38                            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(8Q24.13) MUTATED       46     14      5     26      8
  AMP PEAK  9(8Q24.13) WILD-TYPE     84    101    100    107     22
D9V7, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                           46                             84
  CLUS_2                           14                            101
  CLUS_3                            5                            100
  CLUS_4                           26                            107
  CLUS_5                            8                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(8Q24.13) MUTATED       52      3      2     20      5      8
  AMP PEAK  9(8Q24.13) WILD-TYPE     83     68     34     48     85     33
                                vv
clus                             CLUS_7
  AMP PEAK  9(8Q24.13) MUTATED        9
  AMP PEAK  9(8Q24.13) WILD-TYPE     63
D9V8, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                           52                             83
  CLUS_2                            3                             68
  CLUS_3                            2                             34
  CLUS_4                           20                             48
  CLUS_5                            5                             85
  CLUS_6                            8                             33
  CLUS_7                            9                             63
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q24.13) MUTATED       35     20      6     36
  AMP PEAK  9(8Q24.13) WILD-TYPE    105     87     76    144
D9V9, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                           35                            105
  CLUS_2                           20                             87
  CLUS_3                            6                             76
  CLUS_4                           36                            144
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q24.13) MUTATED       58     30      9
  AMP PEAK  9(8Q24.13) WILD-TYPE    164    154     94
D9V10, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                           58                            164
  CLUS_2                           30                            154
  CLUS_3                            9                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q24.13) MUTATED       37     21     15     24
  AMP PEAK  9(8Q24.13) WILD-TYPE     90     98     90    130
D9V11, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                           37                             90
  CLUS_2                           21                             98
  CLUS_3                           15                             90
  CLUS_4                           24                            130
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(8Q24.13) MUTATED       34     15     14      2      3     29
  AMP PEAK  9(8Q24.13) WILD-TYPE     65     62    104     54     60     63
D9V12, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                           34                             65
  CLUS_2                           15                             62
  CLUS_3                           14                            104
  CLUS_4                            2                             54
  CLUS_5                            3                             60
  CLUS_6                           29                             63
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(9Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(9Q34.3) MUTATED        2      2      0
  AMP PEAK 10(9Q34.3) WILD-TYPE      7      8      8
D10V1, multiclass
        clus
vv       AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE
  CLUS_1                           2                             7
  CLUS_2                           2                             8
  CLUS_3                           0                             8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(9Q34.3) MUTATED        1      2      1      0
  AMP PEAK 10(9Q34.3) WILD-TYPE      6      5      6      6
D10V2, multiclass
        clus
vv       AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE
  CLUS_1                           1                             6
  CLUS_2                           2                             5
  CLUS_3                           1                             6
  CLUS_4                           0                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(9Q34.3) MUTATED       23     15      8
  AMP PEAK 10(9Q34.3) WILD-TYPE    204     96    167
D10V3, multiclass
        clus
vv       AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE
  CLUS_1                          23                           204
  CLUS_2                          15                            96
  CLUS_3                           8                           167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(9Q34.3) MUTATED       24     10      8      4
  AMP PEAK 10(9Q34.3) WILD-TYPE    185    124    149      9
D10V4, multiclass
        clus
vv       AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE
  CLUS_1                          24                           185
  CLUS_2                          10                           124
  CLUS_3                           8                           149
  CLUS_4                           4                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(9Q34.3) MUTATED        9     15      6      6
  AMP PEAK 10(9Q34.3) WILD-TYPE     82     80    119    109
D10V5, multiclass
        clus
vv       AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE
  CLUS_1                           9                            82
  CLUS_2                          15                            80
  CLUS_3                           6                           119
  CLUS_4                           6                           109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(9Q34.3) MUTATED        7     13     16
  AMP PEAK 10(9Q34.3) WILD-TYPE     76    145    169
D10V6, multiclass
        clus
vv       AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE
  CLUS_1                           7                            76
  CLUS_2                          13                           145
  CLUS_3                          16                           169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(9Q34.3) MUTATED       10     18      8      8      2
  AMP PEAK 10(9Q34.3) WILD-TYPE    120     97     97    125     28
D10V7, multiclass
        clus
vv       AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE
  CLUS_1                          10                           120
  CLUS_2                          18                            97
  CLUS_3                           8                            97
  CLUS_4                           8                           125
  CLUS_5                           2                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(9Q34.3) MUTATED        8      6      3      9      4     13
  AMP PEAK 10(9Q34.3) WILD-TYPE    127     65     33     59     86     28
                               vv
clus                            CLUS_7
  AMP PEAK 10(9Q34.3) MUTATED        3
  AMP PEAK 10(9Q34.3) WILD-TYPE     69
D10V8, multiclass
        clus
vv       AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE
  CLUS_1                           8                           127
  CLUS_2                           6                            65
  CLUS_3                           3                            33
  CLUS_4                           9                            59
  CLUS_5                           4                            86
  CLUS_6                          13                            28
  CLUS_7                           3                            69
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(9Q34.3) MUTATED       11     15      7     12
  AMP PEAK 10(9Q34.3) WILD-TYPE    129     92     75    168
D10V9, multiclass
        clus
vv       AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE
  CLUS_1                          11                           129
  CLUS_2                          15                            92
  CLUS_3                           7                            75
  CLUS_4                          12                           168
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(9Q34.3) MUTATED       16     14     15
  AMP PEAK 10(9Q34.3) WILD-TYPE    206    170     88
D10V10, multiclass
        clus
vv       AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE
  CLUS_1                          16                           206
  CLUS_2                          14                           170
  CLUS_3                          15                            88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(9Q34.3) MUTATED       10     12     10     13
  AMP PEAK 10(9Q34.3) WILD-TYPE    117    107     95    141
D10V11, multiclass
        clus
vv       AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE
  CLUS_1                          10                           117
  CLUS_2                          12                           107
  CLUS_3                          10                            95
  CLUS_4                          13                           141
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(9Q34.3) MUTATED        6     12      7      3      6     11
  AMP PEAK 10(9Q34.3) WILD-TYPE     93     65    111     53     57     81
D10V12, multiclass
        clus
vv       AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE
  CLUS_1                           6                            93
  CLUS_2                          12                            65
  CLUS_3                           7                           111
  CLUS_4                           3                            53
  CLUS_5                           6                            57
  CLUS_6                          11                            81
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(10P15.3) MUTATED        3      1      2
  AMP PEAK 11(10P15.3) WILD-TYPE      6      9      6
D11V1, multiclass
        clus
vv       AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE
  CLUS_1                            3                              6
  CLUS_2                            1                              9
  CLUS_3                            2                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(10P15.3) MUTATED        1      4      0      1
  AMP PEAK 11(10P15.3) WILD-TYPE      6      3      7      5
D11V2, multiclass
        clus
vv       AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE
  CLUS_1                            1                              6
  CLUS_2                            4                              3
  CLUS_3                            0                              7
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(10P15.3) MUTATED       60     11      0
  AMP PEAK 11(10P15.3) WILD-TYPE    167    100    175
D11V3, multiclass
        clus
vv       AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE
  CLUS_1                           60                            167
  CLUS_2                           11                            100
  CLUS_3                            0                            175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(10P15.3) MUTATED       59      6      0      6
  AMP PEAK 11(10P15.3) WILD-TYPE    150    128    157      7
D11V4, multiclass
        clus
vv       AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE
  CLUS_1                           59                            150
  CLUS_2                            6                            128
  CLUS_3                            0                            157
  CLUS_4                            6                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(10P15.3) MUTATED       18     15     19      6
  AMP PEAK 11(10P15.3) WILD-TYPE     73     80    106    109
D11V5, multiclass
        clus
vv       AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE
  CLUS_1                           18                             73
  CLUS_2                           15                             80
  CLUS_3                           19                            106
  CLUS_4                            6                            109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(10P15.3) MUTATED       17     10     31
  AMP PEAK 11(10P15.3) WILD-TYPE     66    148    154
D11V6, multiclass
        clus
vv       AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE
  CLUS_1                           17                             66
  CLUS_2                           10                            148
  CLUS_3                           31                            154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(10P15.3) MUTATED       37     15      0     16      3
  AMP PEAK 11(10P15.3) WILD-TYPE     93    100    105    117     27
D11V7, multiclass
        clus
vv       AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE
  CLUS_1                           37                             93
  CLUS_2                           15                            100
  CLUS_3                            0                            105
  CLUS_4                           16                            117
  CLUS_5                            3                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(10P15.3) MUTATED       40      1      0     14      0     12
  AMP PEAK 11(10P15.3) WILD-TYPE     95     70     36     54     90     29
                                vv
clus                             CLUS_7
  AMP PEAK 11(10P15.3) MUTATED        4
  AMP PEAK 11(10P15.3) WILD-TYPE     68
D11V8, multiclass
        clus
vv       AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE
  CLUS_1                           40                             95
  CLUS_2                            1                             70
  CLUS_3                            0                             36
  CLUS_4                           14                             54
  CLUS_5                            0                             90
  CLUS_6                           12                             29
  CLUS_7                            4                             68
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(10P15.3) MUTATED       20     27      4     19
  AMP PEAK 11(10P15.3) WILD-TYPE    120     80     78    161
D11V9, multiclass
        clus
vv       AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE
  CLUS_1                           20                            120
  CLUS_2                           27                             80
  CLUS_3                            4                             78
  CLUS_4                           19                            161
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(10P15.3) MUTATED       39     18     13
  AMP PEAK 11(10P15.3) WILD-TYPE    183    166     90
D11V10, multiclass
        clus
vv       AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE
  CLUS_1                           39                            183
  CLUS_2                           18                            166
  CLUS_3                           13                             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(10P15.3) MUTATED       24     24      6     16
  AMP PEAK 11(10P15.3) WILD-TYPE    103     95     99    138
D11V11, multiclass
        clus
vv       AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE
  CLUS_1                           24                            103
  CLUS_2                           24                             95
  CLUS_3                            6                             99
  CLUS_4                           16                            138
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(10P15.3) MUTATED       28     16      9      0      1     16
  AMP PEAK 11(10P15.3) WILD-TYPE     71     61    109     56     62     76
D11V12, multiclass
        clus
vv       AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE
  CLUS_1                           28                             71
  CLUS_2                           16                             61
  CLUS_3                            9                            109
  CLUS_4                            0                             56
  CLUS_5                            1                             62
  CLUS_6                           16                             76
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(11Q24.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(11Q24.1) MUTATED        0      4      1
  AMP PEAK 12(11Q24.1) WILD-TYPE      9      6      7
D12V1, multiclass
        clus
vv       AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE
  CLUS_1                            0                              9
  CLUS_2                            4                              6
  CLUS_3                            1                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(11Q24.1) MUTATED        0      2      3      0
  AMP PEAK 12(11Q24.1) WILD-TYPE      7      5      4      6
D12V2, multiclass
        clus
vv       AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE
  CLUS_1                            0                              7
  CLUS_2                            2                              5
  CLUS_3                            3                              4
  CLUS_4                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(11Q24.1) MUTATED       39     24     24
  AMP PEAK 12(11Q24.1) WILD-TYPE    188     87    151
D12V3, multiclass
        clus
vv       AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE
  CLUS_1                           39                            188
  CLUS_2                           24                             87
  CLUS_3                           24                            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(11Q24.1) MUTATED       47     12     26      2
  AMP PEAK 12(11Q24.1) WILD-TYPE    162    122    131     11
D12V4, multiclass
        clus
vv       AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE
  CLUS_1                           47                            162
  CLUS_2                           12                            122
  CLUS_3                           26                            131
  CLUS_4                            2                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(11Q24.1) MUTATED       17     14     28     15
  AMP PEAK 12(11Q24.1) WILD-TYPE     74     81     97    100
D12V5, multiclass
        clus
vv       AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE
  CLUS_1                           17                             74
  CLUS_2                           14                             81
  CLUS_3                           28                             97
  CLUS_4                           15                            100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(11Q24.1) MUTATED       14     19     41
  AMP PEAK 12(11Q24.1) WILD-TYPE     69    139    144
D12V6, multiclass
        clus
vv       AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE
  CLUS_1                           14                             69
  CLUS_2                           19                            139
  CLUS_3                           41                            144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(11Q24.1) MUTATED       28     10     19     23      7
  AMP PEAK 12(11Q24.1) WILD-TYPE    102    105     86    110     23
D12V7, multiclass
        clus
vv       AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE
  CLUS_1                           28                            102
  CLUS_2                           10                            105
  CLUS_3                           19                             86
  CLUS_4                           23                            110
  CLUS_5                            7                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(11Q24.1) MUTATED       30      5      5     14     16      6
  AMP PEAK 12(11Q24.1) WILD-TYPE    105     66     31     54     74     35
                                vv
clus                             CLUS_7
  AMP PEAK 12(11Q24.1) MUTATED       11
  AMP PEAK 12(11Q24.1) WILD-TYPE     61
D12V8, multiclass
        clus
vv       AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE
  CLUS_1                           30                            105
  CLUS_2                            5                             66
  CLUS_3                            5                             31
  CLUS_4                           14                             54
  CLUS_5                           16                             74
  CLUS_6                            6                             35
  CLUS_7                           11                             61
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(11Q24.1) MUTATED       28     15     14     30
  AMP PEAK 12(11Q24.1) WILD-TYPE    112     92     68    150
D12V9, multiclass
        clus
vv       AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE
  CLUS_1                           28                            112
  CLUS_2                           15                             92
  CLUS_3                           14                             68
  CLUS_4                           30                            150
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(11Q24.1) MUTATED       46     29     12
  AMP PEAK 12(11Q24.1) WILD-TYPE    176    155     91
D12V10, multiclass
        clus
vv       AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE
  CLUS_1                           46                            176
  CLUS_2                           29                            155
  CLUS_3                           12                             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(11Q24.1) MUTATED       27     17     16     27
  AMP PEAK 12(11Q24.1) WILD-TYPE    100    102     89    127
D12V11, multiclass
        clus
vv       AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE
  CLUS_1                           27                            100
  CLUS_2                           17                            102
  CLUS_3                           16                             89
  CLUS_4                           27                            127
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(11Q24.1) MUTATED       22     14     18     10      2     21
  AMP PEAK 12(11Q24.1) WILD-TYPE     77     63    100     46     61     71
D12V12, multiclass
        clus
vv       AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE
  CLUS_1                           22                             77
  CLUS_2                           14                             63
  CLUS_3                           18                            100
  CLUS_4                           10                             46
  CLUS_5                            2                             61
  CLUS_6                           21                             71
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(12P13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(12P13.32) MUTATED        3      2      2
  AMP PEAK 13(12P13.32) WILD-TYPE      6      8      6
D13V1, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                             3                               6
  CLUS_2                             2                               8
  CLUS_3                             2                               6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(12P13.32) MUTATED        2      4      0      1
  AMP PEAK 13(12P13.32) WILD-TYPE      5      3      7      5
D13V2, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                             2                               5
  CLUS_2                             4                               3
  CLUS_3                             0                               7
  CLUS_4                             1                               5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(12P13.32) MUTATED       45     24      3
  AMP PEAK 13(12P13.32) WILD-TYPE    182     87    172
D13V3, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            45                             182
  CLUS_2                            24                              87
  CLUS_3                             3                             172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(12P13.32) MUTATED       55     10      5      2
  AMP PEAK 13(12P13.32) WILD-TYPE    154    124    152     11
D13V4, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            55                             154
  CLUS_2                            10                             124
  CLUS_3                             5                             152
  CLUS_4                             2                              11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(12P13.32) MUTATED       13     24     12     11
  AMP PEAK 13(12P13.32) WILD-TYPE     78     71    113    104
D13V5, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            13                              78
  CLUS_2                            24                              71
  CLUS_3                            12                             113
  CLUS_4                            11                             104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(12P13.32) MUTATED        8     19     33
  AMP PEAK 13(12P13.32) WILD-TYPE     75    139    152
D13V6, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                             8                              75
  CLUS_2                            19                             139
  CLUS_3                            33                             152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(12P13.32) MUTATED       29     22      4     13      4
  AMP PEAK 13(12P13.32) WILD-TYPE    101     93    101    120     26
D13V7, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            29                             101
  CLUS_2                            22                              93
  CLUS_3                             4                             101
  CLUS_4                            13                             120
  CLUS_5                             4                              26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(12P13.32) MUTATED       32      8      1     14      4     12
  AMP PEAK 13(12P13.32) WILD-TYPE    103     63     35     54     86     29
                                 vv
clus                              CLUS_7
  AMP PEAK 13(12P13.32) MUTATED        1
  AMP PEAK 13(12P13.32) WILD-TYPE     71
D13V8, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            32                             103
  CLUS_2                             8                              63
  CLUS_3                             1                              35
  CLUS_4                            14                              54
  CLUS_5                             4                              86
  CLUS_6                            12                              29
  CLUS_7                             1                              71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(12P13.32) MUTATED       17     26     11     18
  AMP PEAK 13(12P13.32) WILD-TYPE    123     81     71    162
D13V9, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            17                             123
  CLUS_2                            26                              81
  CLUS_3                            11                              71
  CLUS_4                            18                             162
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(12P13.32) MUTATED       36     15     21
  AMP PEAK 13(12P13.32) WILD-TYPE    186    169     82
D13V10, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            36                             186
  CLUS_2                            15                             169
  CLUS_3                            21                              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(12P13.32) MUTATED       23     27      9     13
  AMP PEAK 13(12P13.32) WILD-TYPE    104     92     96    141
D13V11, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            23                             104
  CLUS_2                            27                              92
  CLUS_3                             9                              96
  CLUS_4                            13                             141
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(12P13.32) MUTATED       19     22      4      4      7     16
  AMP PEAK 13(12P13.32) WILD-TYPE     80     55    114     52     56     76
D13V12, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            19                              80
  CLUS_2                            22                              55
  CLUS_3                             4                             114
  CLUS_4                             4                              52
  CLUS_5                             7                              56
  CLUS_6                            16                              76
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(12Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12Q14.1) MUTATED        0      1      0
  AMP PEAK 14(12Q14.1) WILD-TYPE      9      9      8
D14V1, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 14(12Q14.1) MUTATED"
clus
  AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE 
                             1                             26 
                    TCGA-CS-4942                     TCGA-CS-4943 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-CS-4944                     TCGA-CS-5390 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-CS-5394                     TCGA-CS-5395 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-CS-5396                     TCGA-DB-5270 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DB-5273                     TCGA-DB-5274 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DB-5275                     TCGA-DB-5276 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DB-5277                     TCGA-DB-5278 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DB-5280                     TCGA-DB-5281 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DH-5140                     TCGA-DH-5141 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DH-5142                     TCGA-DH-5143 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DH-5144                     TCGA-E1-5302 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-E1-5303                     TCGA-E1-5304 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-E1-5311                     TCGA-E1-5322 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q14.1) MUTATED        0      0      1      0
  AMP PEAK 14(12Q14.1) WILD-TYPE      7      7      6      6
D14V2, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 14(12Q14.1) MUTATED"
clus
  AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE 
                             1                             26 
                    TCGA-CS-4942                     TCGA-CS-4943 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-CS-4944                     TCGA-CS-5390 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-CS-5394                     TCGA-CS-5395 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-CS-5396                     TCGA-DB-5270 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DB-5273                     TCGA-DB-5274 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DB-5275                     TCGA-DB-5276 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DB-5277                     TCGA-DB-5278 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DB-5280                     TCGA-DB-5281 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DH-5140                     TCGA-DH-5141 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DH-5142                     TCGA-DH-5143 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DH-5144                     TCGA-E1-5302 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-E1-5303                     TCGA-E1-5304 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-E1-5311                     TCGA-E1-5322 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12Q14.1) MUTATED        8     28      1
  AMP PEAK 14(12Q14.1) WILD-TYPE    219     83    174
D14V3, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                            8                            219
  CLUS_2                           28                             83
  CLUS_3                            1                            174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q14.1) MUTATED        8     20      4      5
  AMP PEAK 14(12Q14.1) WILD-TYPE    201    114    153      8
D14V4, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                            8                            201
  CLUS_2                           20                            114
  CLUS_3                            4                            153
  CLUS_4                            5                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q14.1) MUTATED        3     13      6      4
  AMP PEAK 14(12Q14.1) WILD-TYPE     88     82    119    111
D14V5, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                            3                             88
  CLUS_2                           13                             82
  CLUS_3                            6                            119
  CLUS_4                            4                            111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12Q14.1) MUTATED        3      8     15
  AMP PEAK 14(12Q14.1) WILD-TYPE     80    150    170
D14V6, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                            3                             80
  CLUS_2                            8                            150
  CLUS_3                           15                            170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(12Q14.1) MUTATED        3     27      3      3      1
  AMP PEAK 14(12Q14.1) WILD-TYPE    127     88    102    130     29
D14V7, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                            3                            127
  CLUS_2                           27                             88
  CLUS_3                            3                            102
  CLUS_4                            3                            130
  CLUS_5                            1                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(12Q14.1) MUTATED        3     18      1      4      3      8
  AMP PEAK 14(12Q14.1) WILD-TYPE    132     53     35     64     87     33
                                vv
clus                             CLUS_7
  AMP PEAK 14(12Q14.1) MUTATED        0
  AMP PEAK 14(12Q14.1) WILD-TYPE     72
D14V8, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                            3                            132
  CLUS_2                           18                             53
  CLUS_3                            1                             35
  CLUS_4                            4                             64
  CLUS_5                            3                             87
  CLUS_6                            8                             33
  CLUS_7                            0                             72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q14.1) MUTATED       13     15      3      6
  AMP PEAK 14(12Q14.1) WILD-TYPE    127     92     79    174
D14V9, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                           13                            127
  CLUS_2                           15                             92
  CLUS_3                            3                             79
  CLUS_4                            6                            174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12Q14.1) MUTATED       10      5     22
  AMP PEAK 14(12Q14.1) WILD-TYPE    212    179     81
D14V10, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                           10                            212
  CLUS_2                            5                            179
  CLUS_3                           22                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q14.1) MUTATED        9     21      1      6
  AMP PEAK 14(12Q14.1) WILD-TYPE    118     98    104    148
D14V11, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                            9                            118
  CLUS_2                           21                             98
  CLUS_3                            1                            104
  CLUS_4                            6                            148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(12Q14.1) MUTATED        6      6      2      2     15      6
  AMP PEAK 14(12Q14.1) WILD-TYPE     93     71    116     54     48     86
D14V12, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                            6                             93
  CLUS_2                            6                             71
  CLUS_3                            2                            116
  CLUS_4                            2                             54
  CLUS_5                           15                             48
  CLUS_6                            6                             86
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q34) MUTATED        0      0      1
  AMP PEAK 15(13Q34) WILD-TYPE      9     10      7
D15V1, multiclass
[1] "Remove cluster labels:"     "AMP PEAK 15(13Q34) MUTATED"
clus
  AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE 
                           1                           26 
                  TCGA-CS-4942                   TCGA-CS-4943 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-CS-4944                   TCGA-CS-5390 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-CS-5394                   TCGA-CS-5395 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-CS-5396                   TCGA-DB-5270 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-DB-5273                   TCGA-DB-5274 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-DB-5275                   TCGA-DB-5276 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-DB-5278                   TCGA-DB-5280 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-DB-5281                   TCGA-DH-5140 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-DH-5141                   TCGA-DH-5142 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-DH-5143                   TCGA-DH-5144 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-E1-5302                   TCGA-E1-5303 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-E1-5304                   TCGA-E1-5311 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-E1-5318                   TCGA-E1-5322 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q34) MUTATED        0      1      0      0
  AMP PEAK 15(13Q34) WILD-TYPE      7      6      7      6
D15V2, multiclass
[1] "Remove cluster labels:"     "AMP PEAK 15(13Q34) MUTATED"
clus
  AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE 
                           1                           26 
                  TCGA-CS-4942                   TCGA-CS-4943 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-CS-4944                   TCGA-CS-5390 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-CS-5394                   TCGA-CS-5395 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-CS-5396                   TCGA-DB-5270 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-DB-5273                   TCGA-DB-5274 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-DB-5275                   TCGA-DB-5276 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-DB-5278                   TCGA-DB-5280 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-DB-5281                   TCGA-DH-5140 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-DH-5141                   TCGA-DH-5142 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-DH-5143                   TCGA-DH-5144 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-E1-5302                   TCGA-E1-5303 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-E1-5304                   TCGA-E1-5311 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-E1-5318                   TCGA-E1-5322 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q34) MUTATED       15      6      1
  AMP PEAK 15(13Q34) WILD-TYPE    212    105    174
D15V3, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         15                          212
  CLUS_2                          6                          105
  CLUS_3                          1                          174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q34) MUTATED       14      5      1      2
  AMP PEAK 15(13Q34) WILD-TYPE    195    129    156     11
D15V4, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         14                          195
  CLUS_2                          5                          129
  CLUS_3                          1                          156
  CLUS_4                          2                           11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q34) MUTATED        6      6      2      3
  AMP PEAK 15(13Q34) WILD-TYPE     85     89    123    112
D15V5, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                          6                           85
  CLUS_2                          6                           89
  CLUS_3                          2                          123
  CLUS_4                          3                          112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q34) MUTATED        3      5      9
  AMP PEAK 15(13Q34) WILD-TYPE     80    153    176
D15V6, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                          3                           80
  CLUS_2                          5                          153
  CLUS_3                          9                          176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(13Q34) MUTATED        7      8      0      6      1
  AMP PEAK 15(13Q34) WILD-TYPE    123    107    105    127     29
D15V7, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                          7                          123
  CLUS_2                          8                          107
  CLUS_3                          0                          105
  CLUS_4                          6                          127
  CLUS_5                          1                           29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 15(13Q34) MUTATED        8      3      0      4      0      5      2
  AMP PEAK 15(13Q34) WILD-TYPE    127     68     36     64     90     36     70
D15V8, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                          8                          127
  CLUS_2                          3                           68
  CLUS_3                          0                           36
  CLUS_4                          4                           64
  CLUS_5                          0                           90
  CLUS_6                          5                           36
  CLUS_7                          2                           70
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q34) MUTATED       11      4      1      6
  AMP PEAK 15(13Q34) WILD-TYPE    129    103     81    174
D15V9, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         11                          129
  CLUS_2                          4                          103
  CLUS_3                          1                           81
  CLUS_4                          6                          174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q34) MUTATED       11      6      5
  AMP PEAK 15(13Q34) WILD-TYPE    211    178     98
D15V10, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         11                          211
  CLUS_2                          6                          178
  CLUS_3                          5                           98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q34) MUTATED        8      7      2      5
  AMP PEAK 15(13Q34) WILD-TYPE    119    112    103    149
D15V11, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                          8                          119
  CLUS_2                          7                          112
  CLUS_3                          2                          103
  CLUS_4                          5                          149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(13Q34) MUTATED        9      4      4      0      3      2
  AMP PEAK 15(13Q34) WILD-TYPE     90     73    114     56     60     90
D15V12, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                          9                           90
  CLUS_2                          4                           73
  CLUS_3                          4                          114
  CLUS_4                          0                           56
  CLUS_5                          3                           60
  CLUS_6                          2                           90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(15Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(15Q26.3) MUTATED        1      1      1
  AMP PEAK 16(15Q26.3) WILD-TYPE      8      9      7
D16V1, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            1                              9
  CLUS_3                            1                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(15Q26.3) MUTATED        0      3      0      0
  AMP PEAK 16(15Q26.3) WILD-TYPE      7      4      7      6
D16V2, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                            0                              7
  CLUS_2                            3                              4
  CLUS_3                            0                              7
  CLUS_4                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(15Q26.3) MUTATED       12      7      0
  AMP PEAK 16(15Q26.3) WILD-TYPE    215    104    175
D16V3, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                           12                            215
  CLUS_2                            7                            104
  CLUS_3                            0                            175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(15Q26.3) MUTATED       11      5      0      3
  AMP PEAK 16(15Q26.3) WILD-TYPE    198    129    157     10
D16V4, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                           11                            198
  CLUS_2                            5                            129
  CLUS_3                            0                            157
  CLUS_4                            3                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(15Q26.3) MUTATED        1      6      6      2
  AMP PEAK 16(15Q26.3) WILD-TYPE     90     89    119    113
D16V5, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                            1                             90
  CLUS_2                            6                             89
  CLUS_3                            6                            119
  CLUS_4                            2                            113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(15Q26.3) MUTATED        1      4     10
  AMP PEAK 16(15Q26.3) WILD-TYPE     82    154    175
D16V6, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                            1                             82
  CLUS_2                            4                            154
  CLUS_3                           10                            175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(15Q26.3) MUTATED        5      8      0      4      2
  AMP PEAK 16(15Q26.3) WILD-TYPE    125    107    105    129     28
D16V7, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                            5                            125
  CLUS_2                            8                            107
  CLUS_3                            0                            105
  CLUS_4                            4                            129
  CLUS_5                            2                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(15Q26.3) MUTATED        7      4      0      2      0      4
  AMP PEAK 16(15Q26.3) WILD-TYPE    128     67     36     66     90     37
                                vv
clus                             CLUS_7
  AMP PEAK 16(15Q26.3) MUTATED        2
  AMP PEAK 16(15Q26.3) WILD-TYPE     70
D16V8, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                            7                            128
  CLUS_2                            4                             67
  CLUS_3                            0                             36
  CLUS_4                            2                             66
  CLUS_5                            0                             90
  CLUS_6                            4                             37
  CLUS_7                            2                             70
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(15Q26.3) MUTATED        5      6      1      7
  AMP PEAK 16(15Q26.3) WILD-TYPE    135    101     81    173
D16V9, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                            5                            135
  CLUS_2                            6                            101
  CLUS_3                            1                             81
  CLUS_4                            7                            173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(15Q26.3) MUTATED        9      4      6
  AMP PEAK 16(15Q26.3) WILD-TYPE    213    180     97
D16V10, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                            9                            213
  CLUS_2                            4                            180
  CLUS_3                            6                             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(15Q26.3) MUTATED        4      9      1      5
  AMP PEAK 16(15Q26.3) WILD-TYPE    123    110    104    149
D16V11, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                            4                            123
  CLUS_2                            9                            110
  CLUS_3                            1                            104
  CLUS_4                            5                            149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(15Q26.3) MUTATED        3      8      2      0      3      3
  AMP PEAK 16(15Q26.3) WILD-TYPE     96     69    116     56     60     89
D16V12, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                            3                             96
  CLUS_2                            8                             69
  CLUS_3                            2                            116
  CLUS_4                            0                             56
  CLUS_5                            3                             60
  CLUS_6                            3                             89
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(17Q25.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(17Q25.1) MUTATED        0      2      0
  AMP PEAK 17(17Q25.1) WILD-TYPE      9      8      8
D17V1, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 17(17Q25.1) MUTATED"
clus
  AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE 
                             2                             25 
                    TCGA-CS-4942                     TCGA-CS-4943 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-CS-4944                     TCGA-CS-5390 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-CS-5394                     TCGA-CS-5395 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-CS-5396                     TCGA-DB-5270 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-DB-5273                     TCGA-DB-5274 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-DB-5275                     TCGA-DB-5276 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-DB-5277                     TCGA-DB-5278 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-DB-5280                     TCGA-DB-5281 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-DH-5141                     TCGA-DH-5142 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-DH-5143                     TCGA-DH-5144 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-E1-5302                     TCGA-E1-5303 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-E1-5311                     TCGA-E1-5318 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-E1-5322 
"AMP PEAK 17(17Q25.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17Q25.1) MUTATED        0      2      0      0
  AMP PEAK 17(17Q25.1) WILD-TYPE      7      5      7      6
D17V2, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 17(17Q25.1) MUTATED"
clus
  AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE 
                             2                             25 
                    TCGA-CS-4942                     TCGA-CS-4943 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-CS-4944                     TCGA-CS-5390 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-CS-5394                     TCGA-CS-5395 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-CS-5396                     TCGA-DB-5270 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-DB-5273                     TCGA-DB-5274 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-DB-5275                     TCGA-DB-5276 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-DB-5277                     TCGA-DB-5278 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-DB-5280                     TCGA-DB-5281 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-DH-5141                     TCGA-DH-5142 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-DH-5143                     TCGA-DH-5144 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-E1-5302                     TCGA-E1-5303 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-E1-5311                     TCGA-E1-5318 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-E1-5322 
"AMP PEAK 17(17Q25.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(17Q25.1) MUTATED       18     16     10
  AMP PEAK 17(17Q25.1) WILD-TYPE    209     95    165
D17V3, multiclass
        clus
vv       AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE
  CLUS_1                           18                            209
  CLUS_2                           16                             95
  CLUS_3                           10                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17Q25.1) MUTATED       19     12     11      2
  AMP PEAK 17(17Q25.1) WILD-TYPE    190    122    146     11
D17V4, multiclass
        clus
vv       AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE
  CLUS_1                           19                            190
  CLUS_2                           12                            122
  CLUS_3                           11                            146
  CLUS_4                            2                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17Q25.1) MUTATED        9     11      6      4
  AMP PEAK 17(17Q25.1) WILD-TYPE     82     84    119    111
D17V5, multiclass
        clus
vv       AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE
  CLUS_1                            9                             82
  CLUS_2                           11                             84
  CLUS_3                            6                            119
  CLUS_4                            4                            111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(17Q25.1) MUTATED       11      7     12
  AMP PEAK 17(17Q25.1) WILD-TYPE     72    151    173
D17V6, multiclass
        clus
vv       AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE
  CLUS_1                           11                             72
  CLUS_2                            7                            151
  CLUS_3                           12                            173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(17Q25.1) MUTATED       10     18      7      9      0
  AMP PEAK 17(17Q25.1) WILD-TYPE    120     97     98    124     30
D17V7, multiclass
        clus
vv       AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE
  CLUS_1                           10                            120
  CLUS_2                           18                             97
  CLUS_3                            7                             98
  CLUS_4                            9                            124
  CLUS_5                            0                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(17Q25.1) MUTATED       10      8      2      6      7      9
  AMP PEAK 17(17Q25.1) WILD-TYPE    125     63     34     62     83     32
                                vv
clus                             CLUS_7
  AMP PEAK 17(17Q25.1) MUTATED        2
  AMP PEAK 17(17Q25.1) WILD-TYPE     70
D17V8, multiclass
        clus
vv       AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE
  CLUS_1                           10                            125
  CLUS_2                            8                             63
  CLUS_3                            2                             34
  CLUS_4                            6                             62
  CLUS_5                            7                             83
  CLUS_6                            9                             32
  CLUS_7                            2                             70
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17Q25.1) MUTATED       12     14      8     10
  AMP PEAK 17(17Q25.1) WILD-TYPE    128     93     74    170
D17V9, multiclass
        clus
vv       AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE
  CLUS_1                           12                            128
  CLUS_2                           14                             93
  CLUS_3                            8                             74
  CLUS_4                           10                            170
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(17Q25.1) MUTATED       20     13     11
  AMP PEAK 17(17Q25.1) WILD-TYPE    202    171     92
D17V10, multiclass
        clus
vv       AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE
  CLUS_1                           20                            202
  CLUS_2                           13                            171
  CLUS_3                           11                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17Q25.1) MUTATED        8     17      9      9
  AMP PEAK 17(17Q25.1) WILD-TYPE    119    102     96    145
D17V11, multiclass
        clus
vv       AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE
  CLUS_1                            8                            119
  CLUS_2                           17                            102
  CLUS_3                            9                             96
  CLUS_4                            9                            145
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(17Q25.1) MUTATED       10      5      5      6      7     10
  AMP PEAK 17(17Q25.1) WILD-TYPE     89     72    113     50     56     82
D17V12, multiclass
        clus
vv       AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE
  CLUS_1                           10                             89
  CLUS_2                            5                             72
  CLUS_3                            5                            113
  CLUS_4                            6                             50
  CLUS_5                            7                             56
  CLUS_6                           10                             82
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19P13.3) MUTATED        1      6      2
  AMP PEAK 18(19P13.3) WILD-TYPE      8      4      6
D18V1, multiclass
        clus
vv       AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            6                              4
  CLUS_3                            2                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(19P13.3) MUTATED        1      2      5      1
  AMP PEAK 18(19P13.3) WILD-TYPE      6      5      2      5
D18V2, multiclass
        clus
vv       AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE
  CLUS_1                            1                              6
  CLUS_2                            2                              5
  CLUS_3                            5                              2
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19P13.3) MUTATED       24     29     76
  AMP PEAK 18(19P13.3) WILD-TYPE    203     82     99
D18V3, multiclass
        clus
vv       AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE
  CLUS_1                           24                            203
  CLUS_2                           29                             82
  CLUS_3                           76                             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(19P13.3) MUTATED       19     30     80      0
  AMP PEAK 18(19P13.3) WILD-TYPE    190    104     77     13
D18V4, multiclass
        clus
vv       AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE
  CLUS_1                           19                            190
  CLUS_2                           30                            104
  CLUS_3                           80                             77
  CLUS_4                            0                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(19P13.3) MUTATED       20     27     36     22
  AMP PEAK 18(19P13.3) WILD-TYPE     71     68     89     93
D18V5, multiclass
        clus
vv       AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE
  CLUS_1                           20                             71
  CLUS_2                           27                             68
  CLUS_3                           36                             89
  CLUS_4                           22                             93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19P13.3) MUTATED       12     34     59
  AMP PEAK 18(19P13.3) WILD-TYPE     71    124    126
D18V6, multiclass
        clus
vv       AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE
  CLUS_1                           12                             71
  CLUS_2                           34                            124
  CLUS_3                           59                            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(19P13.3) MUTATED       10     30     53     34      2
  AMP PEAK 18(19P13.3) WILD-TYPE    120     85     52     99     28
D18V7, multiclass
        clus
vv       AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE
  CLUS_1                           10                            120
  CLUS_2                           30                             85
  CLUS_3                           53                             52
  CLUS_4                           34                             99
  CLUS_5                            2                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(19P13.3) MUTATED        8     25     18     10     40      6
  AMP PEAK 18(19P13.3) WILD-TYPE    127     46     18     58     50     35
                                vv
clus                             CLUS_7
  AMP PEAK 18(19P13.3) MUTATED       22
  AMP PEAK 18(19P13.3) WILD-TYPE     50
D18V8, multiclass
        clus
vv       AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE
  CLUS_1                            8                            127
  CLUS_2                           25                             46
  CLUS_3                           18                             18
  CLUS_4                           10                             58
  CLUS_5                           40                             50
  CLUS_6                            6                             35
  CLUS_7                           22                             50
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(19P13.3) MUTATED       26     23     36     44
  AMP PEAK 18(19P13.3) WILD-TYPE    114     84     46    136
D18V9, multiclass
        clus
vv       AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE
  CLUS_1                           26                            114
  CLUS_2                           23                             84
  CLUS_3                           36                             46
  CLUS_4                           44                            136
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19P13.3) MUTATED       47     52     30
  AMP PEAK 18(19P13.3) WILD-TYPE    175    132     73
D18V10, multiclass
        clus
vv       AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE
  CLUS_1                           47                            175
  CLUS_2                           52                            132
  CLUS_3                           30                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(19P13.3) MUTATED       19     27     46     37
  AMP PEAK 18(19P13.3) WILD-TYPE    108     92     59    117
D18V11, multiclass
        clus
vv       AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE
  CLUS_1                           19                            108
  CLUS_2                           27                             92
  CLUS_3                           46                             59
  CLUS_4                           37                            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(19P13.3) MUTATED       12     15     30     27     23     22
  AMP PEAK 18(19P13.3) WILD-TYPE     87     62     88     29     40     70
D18V12, multiclass
        clus
vv       AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE
  CLUS_1                           12                             87
  CLUS_2                           15                             62
  CLUS_3                           30                             88
  CLUS_4                           27                             29
  CLUS_5                           23                             40
  CLUS_6                           22                             70
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(XP11.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(XP11.22) MUTATED        1      1      2
  AMP PEAK 19(XP11.22) WILD-TYPE      8      9      6
D19V1, multiclass
        clus
vv       AMP PEAK 19(XP11.22) MUTATED AMP PEAK 19(XP11.22) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            1                              9
  CLUS_3                            2                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(XP11.22) MUTATED        1      1      1      1
  AMP PEAK 19(XP11.22) WILD-TYPE      6      6      6      5
D19V2, multiclass
        clus
vv       AMP PEAK 19(XP11.22) MUTATED AMP PEAK 19(XP11.22) WILD-TYPE
  CLUS_1                            1                              6
  CLUS_2                            1                              6
  CLUS_3                            1                              6
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(XP11.22) MUTATED       33     13      2
  AMP PEAK 19(XP11.22) WILD-TYPE    194     98    173
D19V3, multiclass
        clus
vv       AMP PEAK 19(XP11.22) MUTATED AMP PEAK 19(XP11.22) WILD-TYPE
  CLUS_1                           33                            194
  CLUS_2                           13                             98
  CLUS_3                            2                            173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(XP11.22) MUTATED       38      6      1      3
  AMP PEAK 19(XP11.22) WILD-TYPE    171    128    156     10
D19V4, multiclass
        clus
vv       AMP PEAK 19(XP11.22) MUTATED AMP PEAK 19(XP11.22) WILD-TYPE
  CLUS_1                           38                            171
  CLUS_2                            6                            128
  CLUS_3                            1                            156
  CLUS_4                            3                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(XP11.22) MUTATED        9     10     15      7
  AMP PEAK 19(XP11.22) WILD-TYPE     82     85    110    108
D19V5, multiclass
        clus
vv       AMP PEAK 19(XP11.22) MUTATED AMP PEAK 19(XP11.22) WILD-TYPE
  CLUS_1                            9                             82
  CLUS_2                           10                             85
  CLUS_3                           15                            110
  CLUS_4                            7                            108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(XP11.22) MUTATED        8     10     23
  AMP PEAK 19(XP11.22) WILD-TYPE     75    148    162
D19V6, multiclass
        clus
vv       AMP PEAK 19(XP11.22) MUTATED AMP PEAK 19(XP11.22) WILD-TYPE
  CLUS_1                            8                             75
  CLUS_2                           10                            148
  CLUS_3                           23                            162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(XP11.22) MUTATED       18     13      1     13      3
  AMP PEAK 19(XP11.22) WILD-TYPE    112    102    104    120     27
D19V7, multiclass
        clus
vv       AMP PEAK 19(XP11.22) MUTATED AMP PEAK 19(XP11.22) WILD-TYPE
  CLUS_1                           18                            112
  CLUS_2                           13                            102
  CLUS_3                            1                            104
  CLUS_4                           13                            120
  CLUS_5                            3                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(XP11.22) MUTATED       22      3      0      9      1      8
  AMP PEAK 19(XP11.22) WILD-TYPE    113     68     36     59     89     33
                                vv
clus                             CLUS_7
  AMP PEAK 19(XP11.22) MUTATED        5
  AMP PEAK 19(XP11.22) WILD-TYPE     67
D19V8, multiclass
        clus
vv       AMP PEAK 19(XP11.22) MUTATED AMP PEAK 19(XP11.22) WILD-TYPE
  CLUS_1                           22                            113
  CLUS_2                            3                             68
  CLUS_3                            0                             36
  CLUS_4                            9                             59
  CLUS_5                            1                             89
  CLUS_6                            8                             33
  CLUS_7                            5                             67
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(XP11.22) MUTATED       16     13      2     16
  AMP PEAK 19(XP11.22) WILD-TYPE    124     94     80    164
D19V9, multiclass
        clus
vv       AMP PEAK 19(XP11.22) MUTATED AMP PEAK 19(XP11.22) WILD-TYPE
  CLUS_1                           16                            124
  CLUS_2                           13                             94
  CLUS_3                            2                             80
  CLUS_4                           16                            164
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(XP11.22) MUTATED       22     14     11
  AMP PEAK 19(XP11.22) WILD-TYPE    200    170     92
D19V10, multiclass
        clus
vv       AMP PEAK 19(XP11.22) MUTATED AMP PEAK 19(XP11.22) WILD-TYPE
  CLUS_1                           22                            200
  CLUS_2                           14                            170
  CLUS_3                           11                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(XP11.22) MUTATED       17     15      3     12
  AMP PEAK 19(XP11.22) WILD-TYPE    110    104    102    142
D19V11, multiclass
        clus
vv       AMP PEAK 19(XP11.22) MUTATED AMP PEAK 19(XP11.22) WILD-TYPE
  CLUS_1                           17                            110
  CLUS_2                           15                            104
  CLUS_3                            3                            102
  CLUS_4                           12                            142
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(XP11.22) MUTATED       16     12      8      0      3      8
  AMP PEAK 19(XP11.22) WILD-TYPE     83     65    110     56     60     84
D19V12, multiclass
        clus
vv       AMP PEAK 19(XP11.22) MUTATED AMP PEAK 19(XP11.22) WILD-TYPE
  CLUS_1                           16                             83
  CLUS_2                           12                             65
  CLUS_3                            8                            110
  CLUS_4                            0                             56
  CLUS_5                            3                             60
  CLUS_6                            8                             84
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(XP11.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(XP11.22) MUTATED        1      1      2
  AMP PEAK 20(XP11.22) WILD-TYPE      8      9      6
D20V1, multiclass
        clus
vv       AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            1                              9
  CLUS_3                            2                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(XP11.22) MUTATED        1      1      1      1
  AMP PEAK 20(XP11.22) WILD-TYPE      6      6      6      5
D20V2, multiclass
        clus
vv       AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE
  CLUS_1                            1                              6
  CLUS_2                            1                              6
  CLUS_3                            1                              6
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(XP11.22) MUTATED       47     14      2
  AMP PEAK 20(XP11.22) WILD-TYPE    180     97    173
D20V3, multiclass
        clus
vv       AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE
  CLUS_1                           47                            180
  CLUS_2                           14                             97
  CLUS_3                            2                            173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(XP11.22) MUTATED       49      9      1      4
  AMP PEAK 20(XP11.22) WILD-TYPE    160    125    156      9
D20V4, multiclass
        clus
vv       AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE
  CLUS_1                           49                            160
  CLUS_2                            9                            125
  CLUS_3                            1                            156
  CLUS_4                            4                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(XP11.22) MUTATED       11     14     20      8
  AMP PEAK 20(XP11.22) WILD-TYPE     80     81    105    107
D20V5, multiclass
        clus
vv       AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE
  CLUS_1                           11                             80
  CLUS_2                           14                             81
  CLUS_3                           20                            105
  CLUS_4                            8                            107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(XP11.22) MUTATED       11     13     29
  AMP PEAK 20(XP11.22) WILD-TYPE     72    145    156
D20V6, multiclass
        clus
vv       AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE
  CLUS_1                           11                             72
  CLUS_2                           13                            145
  CLUS_3                           29                            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(XP11.22) MUTATED       24     19      1     15      4
  AMP PEAK 20(XP11.22) WILD-TYPE    106     96    104    118     26
D20V7, multiclass
        clus
vv       AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE
  CLUS_1                           24                            106
  CLUS_2                           19                             96
  CLUS_3                            1                            104
  CLUS_4                           15                            118
  CLUS_5                            4                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(XP11.22) MUTATED       30      5      0     12      1     11
  AMP PEAK 20(XP11.22) WILD-TYPE    105     66     36     56     89     30
                                vv
clus                             CLUS_7
  AMP PEAK 20(XP11.22) MUTATED        4
  AMP PEAK 20(XP11.22) WILD-TYPE     68
D20V8, multiclass
        clus
vv       AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE
  CLUS_1                           30                            105
  CLUS_2                            5                             66
  CLUS_3                            0                             36
  CLUS_4                           12                             56
  CLUS_5                            1                             89
  CLUS_6                           11                             30
  CLUS_7                            4                             68
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(XP11.22) MUTATED       22     19      1     20
  AMP PEAK 20(XP11.22) WILD-TYPE    118     88     81    160
D20V9, multiclass
        clus
vv       AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE
  CLUS_1                           22                            118
  CLUS_2                           19                             88
  CLUS_3                            1                             81
  CLUS_4                           20                            160
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(XP11.22) MUTATED       28     18     16
  AMP PEAK 20(XP11.22) WILD-TYPE    194    166     87
D20V10, multiclass
        clus
vv       AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE
  CLUS_1                           28                            194
  CLUS_2                           18                            166
  CLUS_3                           16                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(XP11.22) MUTATED       26     18      3     15
  AMP PEAK 20(XP11.22) WILD-TYPE    101    101    102    139
D20V11, multiclass
        clus
vv       AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE
  CLUS_1                           26                            101
  CLUS_2                           18                            101
  CLUS_3                            3                            102
  CLUS_4                           15                            139
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(XP11.22) MUTATED       22     13     11      0      4     12
  AMP PEAK 20(XP11.22) WILD-TYPE     77     64    107     56     59     80
D20V12, multiclass
        clus
vv       AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE
  CLUS_1                           22                             77
  CLUS_2                           13                             64
  CLUS_3                           11                            107
  CLUS_4                            0                             56
  CLUS_5                            4                             59
  CLUS_6                           12                             80
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = DEL PEAK  1(1P36.32) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED        0      8      2
  DEL PEAK  1(1P36.32) WILD-TYPE      9      2      6
D21V1, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            0                              9
  CLUS_2                            8                              2
  CLUS_3                            2                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED        0      1      7      2
  DEL PEAK  1(1P36.32) WILD-TYPE      7      6      0      4
D21V2, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            0                              7
  CLUS_2                            1                              6
  CLUS_3                            7                              0
  CLUS_4                            2                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       13     24    169
  DEL PEAK  1(1P36.32) WILD-TYPE    214     87      6
D21V3, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           13                            214
  CLUS_2                           24                             87
  CLUS_3                          169                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED       11     38    157      0
  DEL PEAK  1(1P36.32) WILD-TYPE    198     96      0     13
D21V4, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           11                            198
  CLUS_2                           38                             96
  CLUS_3                          157                              0
  CLUS_4                            0                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED       25     37     52     64
  DEL PEAK  1(1P36.32) WILD-TYPE     66     58     73     51
D21V5, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           25                             66
  CLUS_2                           37                             58
  CLUS_3                           52                             73
  CLUS_4                           64                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       26     85     67
  DEL PEAK  1(1P36.32) WILD-TYPE     57     73    118
D21V6, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           26                             57
  CLUS_2                           85                             73
  CLUS_3                           67                            118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.32) MUTATED        5     22    104     62     13
  DEL PEAK  1(1P36.32) WILD-TYPE    125     93      1     71     17
D21V7, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            5                            125
  CLUS_2                           22                             93
  CLUS_3                          104                              1
  CLUS_4                           62                             71
  CLUS_5                           13                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.32) MUTATED        7     19     36      5     88      1
  DEL PEAK  1(1P36.32) WILD-TYPE    128     52      0     63      2     40
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.32) MUTATED       50
  DEL PEAK  1(1P36.32) WILD-TYPE     22
D21V8, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            7                            128
  CLUS_2                           19                             52
  CLUS_3                           36                              0
  CLUS_4                            5                             63
  CLUS_5                           88                              2
  CLUS_6                            1                             40
  CLUS_7                           50                             22
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED       35     12     69     90
  DEL PEAK  1(1P36.32) WILD-TYPE    105     95     13     90
D21V9, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           35                            105
  CLUS_2                           12                             95
  CLUS_3                           69                             13
  CLUS_4                           90                             90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       84    101     21
  DEL PEAK  1(1P36.32) WILD-TYPE    138     83     82
D21V10, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           84                            138
  CLUS_2                          101                             83
  CLUS_3                           21                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED       23     23     84     76
  DEL PEAK  1(1P36.32) WILD-TYPE    104     96     21     78
D21V11, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           23                            104
  CLUS_2                           23                             96
  CLUS_3                           84                             21
  CLUS_4                           76                             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.32) MUTATED        7     26     63     55     16     39
  DEL PEAK  1(1P36.32) WILD-TYPE     92     51     55      1     47     53
D21V12, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            7                             92
  CLUS_2                           26                             51
  CLUS_3                           63                             55
  CLUS_4                           55                              1
  CLUS_5                           16                             47
  CLUS_6                           39                             53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = DEL PEAK  2(1P32.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P32.3) MUTATED        1      7      2
  DEL PEAK  2(1P32.3) WILD-TYPE      8      3      6
D22V1, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           7                             3
  CLUS_3                           2                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P32.3) MUTATED        0      1      7      2
  DEL PEAK  2(1P32.3) WILD-TYPE      7      6      0      4
D22V2, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           0                             7
  CLUS_2                           1                             6
  CLUS_3                           7                             0
  CLUS_4                           2                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P32.3) MUTATED       10     20    166
  DEL PEAK  2(1P32.3) WILD-TYPE    217     91      9
D22V3, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                          10                           217
  CLUS_2                          20                            91
  CLUS_3                         166                             9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P32.3) MUTATED        5     34    157      0
  DEL PEAK  2(1P32.3) WILD-TYPE    204    100      0     13
D22V4, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           5                           204
  CLUS_2                          34                           100
  CLUS_3                         157                             0
  CLUS_4                           0                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P32.3) MUTATED       26     31     51     61
  DEL PEAK  2(1P32.3) WILD-TYPE     65     64     74     54
D22V5, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                          26                            65
  CLUS_2                          31                            64
  CLUS_3                          51                            74
  CLUS_4                          61                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P32.3) MUTATED       24     81     64
  DEL PEAK  2(1P32.3) WILD-TYPE     59     77    121
D22V6, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                          24                            59
  CLUS_2                          81                            77
  CLUS_3                          64                           121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P32.3) MUTATED        4     17    104     59     12
  DEL PEAK  2(1P32.3) WILD-TYPE    126     98      1     74     18
D22V7, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           4                           126
  CLUS_2                          17                            98
  CLUS_3                         104                             1
  CLUS_4                          59                            74
  CLUS_5                          12                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P32.3) MUTATED        5     16     36      2     88      0
  DEL PEAK  2(1P32.3) WILD-TYPE    130     55      0     66      2     41
                               vv
clus                            CLUS_7
  DEL PEAK  2(1P32.3) MUTATED       49
  DEL PEAK  2(1P32.3) WILD-TYPE     23
D22V8, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           5                           130
  CLUS_2                          16                            55
  CLUS_3                          36                             0
  CLUS_4                           2                            66
  CLUS_5                          88                             2
  CLUS_6                           0                            41
  CLUS_7                          49                            23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P32.3) MUTATED       35      9     68     84
  DEL PEAK  2(1P32.3) WILD-TYPE    105     98     14     96
D22V9, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                          35                           105
  CLUS_2                           9                            98
  CLUS_3                          68                            14
  CLUS_4                          84                            96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P32.3) MUTATED       82     96     18
  DEL PEAK  2(1P32.3) WILD-TYPE    140     88     85
D22V10, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                          82                           140
  CLUS_2                          96                            88
  CLUS_3                          18                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P32.3) MUTATED       20     22     83     71
  DEL PEAK  2(1P32.3) WILD-TYPE    107     97     22     83
D22V11, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                          20                           107
  CLUS_2                          22                            97
  CLUS_3                          83                            22
  CLUS_4                          71                            83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P32.3) MUTATED        7     25     61     55     12     36
  DEL PEAK  2(1P32.3) WILD-TYPE     92     52     57      1     51     56
D22V12, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           7                            92
  CLUS_2                          25                            52
  CLUS_3                          61                            57
  CLUS_4                          55                             1
  CLUS_5                          12                            51
  CLUS_6                          36                            56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = DEL PEAK  3(1Q43) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED        2      0      0
  DEL PEAK  3(1Q43) WILD-TYPE      7     10      8
D23V1, multiclass
[1] "Remove cluster labels:"    "DEL PEAK  3(1Q43) MUTATED"
clus
  DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE 
                          2                          25 
                 TCGA-CS-4942                  TCGA-CS-4943 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-CS-4944                  TCGA-CS-5390 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-CS-5394                  TCGA-CS-5395 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-CS-5396                  TCGA-DB-5270 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DB-5273                  TCGA-DB-5274 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DB-5275                  TCGA-DB-5276 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DB-5277                  TCGA-DB-5278 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DB-5280                  TCGA-DB-5281 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DH-5140                  TCGA-DH-5141 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DH-5142                  TCGA-DH-5143 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DH-5144                  TCGA-E1-5303 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-E1-5304                  TCGA-E1-5311 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-E1-5318 
"DEL PEAK  3(1Q43) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q43) MUTATED        1      1      0      0
  DEL PEAK  3(1Q43) WILD-TYPE      6      6      7      6
D23V2, multiclass
[1] "Remove cluster labels:"    "DEL PEAK  3(1Q43) MUTATED"
clus
  DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE 
                          2                          25 
                 TCGA-CS-4942                  TCGA-CS-4943 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-CS-4944                  TCGA-CS-5390 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-CS-5394                  TCGA-CS-5395 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-CS-5396                  TCGA-DB-5270 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DB-5273                  TCGA-DB-5274 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DB-5275                  TCGA-DB-5276 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DB-5277                  TCGA-DB-5278 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DB-5280                  TCGA-DB-5281 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DH-5140                  TCGA-DH-5141 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DH-5142                  TCGA-DH-5143 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DH-5144                  TCGA-E1-5303 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-E1-5304                  TCGA-E1-5311 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-E1-5318 
"DEL PEAK  3(1Q43) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED       20     11      5
  DEL PEAK  3(1Q43) WILD-TYPE    207    100    170
D23V3, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        20                         207
  CLUS_2                        11                         100
  CLUS_3                         5                         170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q43) MUTATED       20     10      3      3
  DEL PEAK  3(1Q43) WILD-TYPE    189    124    154     10
D23V4, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        20                         189
  CLUS_2                        10                         124
  CLUS_3                         3                         154
  CLUS_4                         3                          10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q43) MUTATED        7     12      8      5
  DEL PEAK  3(1Q43) WILD-TYPE     84     83    117    110
D23V5, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         7                          84
  CLUS_2                        12                          83
  CLUS_3                         8                         117
  CLUS_4                         5                         110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED        4      9     19
  DEL PEAK  3(1Q43) WILD-TYPE     79    149    166
D23V6, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         4                          79
  CLUS_2                         9                         149
  CLUS_3                        19                         166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1Q43) MUTATED       14     11      1      9      1
  DEL PEAK  3(1Q43) WILD-TYPE    116    104    104    124     29
D23V7, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        14                         116
  CLUS_2                        11                         104
  CLUS_3                         1                         104
  CLUS_4                         9                         124
  CLUS_5                         1                          29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  3(1Q43) MUTATED       16      5      1      2      1      5      6
  DEL PEAK  3(1Q43) WILD-TYPE    119     66     35     66     89     36     66
D23V8, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        16                         119
  CLUS_2                         5                          66
  CLUS_3                         1                          35
  CLUS_4                         2                          66
  CLUS_5                         1                          89
  CLUS_6                         5                          36
  CLUS_7                         6                          66
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q43) MUTATED       10     12      2     11
  DEL PEAK  3(1Q43) WILD-TYPE    130     95     80    169
D23V9, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        10                         130
  CLUS_2                        12                          95
  CLUS_3                         2                          80
  CLUS_4                        11                         169
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED       15      9     11
  DEL PEAK  3(1Q43) WILD-TYPE    207    175     92
D23V10, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        15                         207
  CLUS_2                         9                         175
  CLUS_3                        11                          92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q43) MUTATED       16      9      3      7
  DEL PEAK  3(1Q43) WILD-TYPE    111    110    102    147
D23V11, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        16                         111
  CLUS_2                         9                         110
  CLUS_3                         3                         102
  CLUS_4                         7                         147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1Q43) MUTATED        9     10      8      1      5      2
  DEL PEAK  3(1Q43) WILD-TYPE     90     67    110     55     58     90
D23V12, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         9                          90
  CLUS_2                        10                          67
  CLUS_3                         8                         110
  CLUS_4                         1                          55
  CLUS_5                         5                          58
  CLUS_6                         2                          90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = DEL PEAK  4(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        2      1      3
  DEL PEAK  4(2Q37.3) WILD-TYPE      7      9      5
D24V1, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           2                             7
  CLUS_2                           1                             9
  CLUS_3                           3                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED        0      4      0      2
  DEL PEAK  4(2Q37.3) WILD-TYPE      7      3      7      4
D24V2, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           0                             7
  CLUS_2                           4                             3
  CLUS_3                           0                             7
  CLUS_4                           2                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       48     24      5
  DEL PEAK  4(2Q37.3) WILD-TYPE    179     87    170
D24V3, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          48                           179
  CLUS_2                          24                            87
  CLUS_3                           5                           170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED       59      7      6      5
  DEL PEAK  4(2Q37.3) WILD-TYPE    150    127    151      8
D24V4, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          59                           150
  CLUS_2                           7                           127
  CLUS_3                           6                           151
  CLUS_4                           5                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED       10     26     19      9
  DEL PEAK  4(2Q37.3) WILD-TYPE     81     69    106    106
D24V5, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          10                            81
  CLUS_2                          26                            69
  CLUS_3                          19                           106
  CLUS_4                           9                           106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       11     15     38
  DEL PEAK  4(2Q37.3) WILD-TYPE     72    143    147
D24V6, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          11                            72
  CLUS_2                          15                           143
  CLUS_3                          38                           147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q37.3) MUTATED       32     23      6     13      3
  DEL PEAK  4(2Q37.3) WILD-TYPE     98     92     99    120     27
D24V7, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          32                            98
  CLUS_2                          23                            92
  CLUS_3                           6                            99
  CLUS_4                          13                           120
  CLUS_5                           3                            27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED       31      2      1     16      5     21
  DEL PEAK  4(2Q37.3) WILD-TYPE    104     69     35     52     85     20
                               vv
clus                            CLUS_7
  DEL PEAK  4(2Q37.3) MUTATED        1
  DEL PEAK  4(2Q37.3) WILD-TYPE     71
D24V8, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          31                           104
  CLUS_2                           2                            69
  CLUS_3                           1                            35
  CLUS_4                          16                            52
  CLUS_5                           5                            85
  CLUS_6                          21                            20
  CLUS_7                           1                            71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED       27     22      8     19
  DEL PEAK  4(2Q37.3) WILD-TYPE    113     85     74    161
D24V9, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          27                           113
  CLUS_2                          22                            85
  CLUS_3                           8                            74
  CLUS_4                          19                           161
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       41     21     14
  DEL PEAK  4(2Q37.3) WILD-TYPE    181    163     89
D24V10, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          41                           181
  CLUS_2                          21                           163
  CLUS_3                          14                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED       27     22      9     17
  DEL PEAK  4(2Q37.3) WILD-TYPE    100     97     96    137
D24V11, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          27                           100
  CLUS_2                          22                            97
  CLUS_3                           9                            96
  CLUS_4                          17                           137
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED       22     23     10      4      1     15
  DEL PEAK  4(2Q37.3) WILD-TYPE     77     54    108     52     62     77
D24V12, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          22                            77
  CLUS_2                          23                            54
  CLUS_3                          10                           108
  CLUS_4                           4                            52
  CLUS_5                           1                            62
  CLUS_6                          15                            77
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = DEL PEAK  5(3P21.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED        1      2      1
  DEL PEAK  5(3P21.31) WILD-TYPE      8      8      7
D25V1, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            2                              8
  CLUS_3                            1                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P21.31) MUTATED        0      4      0      0
  DEL PEAK  5(3P21.31) WILD-TYPE      7      3      7      6
D25V2, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                            0                              7
  CLUS_2                            4                              3
  CLUS_3                            0                              7
  CLUS_4                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED       23     19      7
  DEL PEAK  5(3P21.31) WILD-TYPE    204     92    168
D25V3, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           23                            204
  CLUS_2                           19                             92
  CLUS_3                            7                            168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P21.31) MUTATED       28     12      6      3
  DEL PEAK  5(3P21.31) WILD-TYPE    181    122    151     10
D25V4, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           28                            181
  CLUS_2                           12                            122
  CLUS_3                            6                            151
  CLUS_4                            3                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P21.31) MUTATED        5     22     10      5
  DEL PEAK  5(3P21.31) WILD-TYPE     86     73    115    110
D25V5, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                            5                             86
  CLUS_2                           22                             73
  CLUS_3                           10                            115
  CLUS_4                            5                            110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED        5     11     26
  DEL PEAK  5(3P21.31) WILD-TYPE     78    147    159
D25V6, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                            5                             78
  CLUS_2                           11                            147
  CLUS_3                           26                            159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P21.31) MUTATED       14     18      5     11      1
  DEL PEAK  5(3P21.31) WILD-TYPE    116     97    100    122     29
D25V7, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           14                            116
  CLUS_2                           18                             97
  CLUS_3                            5                            100
  CLUS_4                           11                            122
  CLUS_5                            1                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P21.31) MUTATED       15      7      2      7      3     12
  DEL PEAK  5(3P21.31) WILD-TYPE    120     64     34     61     87     29
                                vv
clus                             CLUS_7
  DEL PEAK  5(3P21.31) MUTATED        3
  DEL PEAK  5(3P21.31) WILD-TYPE     69
D25V8, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           15                            120
  CLUS_2                            7                             64
  CLUS_3                            2                             34
  CLUS_4                            7                             61
  CLUS_5                            3                             87
  CLUS_6                           12                             29
  CLUS_7                            3                             69
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P21.31) MUTATED       13     20      8      8
  DEL PEAK  5(3P21.31) WILD-TYPE    127     87     74    172
D25V9, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           13                            127
  CLUS_2                           20                             87
  CLUS_3                            8                             74
  CLUS_4                            8                            172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED       24      8     17
  DEL PEAK  5(3P21.31) WILD-TYPE    198    176     86
D25V10, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           24                            198
  CLUS_2                            8                            176
  CLUS_3                           17                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P21.31) MUTATED       12     14     12     10
  DEL PEAK  5(3P21.31) WILD-TYPE    115    105     93    144
D25V11, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           12                            115
  CLUS_2                           14                            105
  CLUS_3                           12                             93
  CLUS_4                           10                            144
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P21.31) MUTATED       12     15      5      2      5      9
  DEL PEAK  5(3P21.31) WILD-TYPE     87     62    113     54     58     83
D25V12, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           12                             87
  CLUS_2                           15                             62
  CLUS_3                            5                            113
  CLUS_4                            2                             54
  CLUS_5                            5                             58
  CLUS_6                            9                             83
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK  6(3Q13.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q13.31) MUTATED        1      0      2
  DEL PEAK  6(3Q13.31) WILD-TYPE      8     10      6
D26V1, multiclass
        clus
vv       DEL PEAK  6(3Q13.31) MUTATED DEL PEAK  6(3Q13.31) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            0                             10
  CLUS_3                            2                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3Q13.31) MUTATED        1      1      0      1
  DEL PEAK  6(3Q13.31) WILD-TYPE      6      6      7      5
D26V2, multiclass
        clus
vv       DEL PEAK  6(3Q13.31) MUTATED DEL PEAK  6(3Q13.31) WILD-TYPE
  CLUS_1                            1                              6
  CLUS_2                            1                              6
  CLUS_3                            0                              7
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q13.31) MUTATED       25     10      4
  DEL PEAK  6(3Q13.31) WILD-TYPE    202    101    171
D26V3, multiclass
        clus
vv       DEL PEAK  6(3Q13.31) MUTATED DEL PEAK  6(3Q13.31) WILD-TYPE
  CLUS_1                           25                            202
  CLUS_2                           10                            101
  CLUS_3                            4                            171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3Q13.31) MUTATED       24     10      4      1
  DEL PEAK  6(3Q13.31) WILD-TYPE    185    124    153     12
D26V4, multiclass
        clus
vv       DEL PEAK  6(3Q13.31) MUTATED DEL PEAK  6(3Q13.31) WILD-TYPE
  CLUS_1                           24                            185
  CLUS_2                           10                            124
  CLUS_3                            4                            153
  CLUS_4                            1                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3Q13.31) MUTATED        2     11     17      7
  DEL PEAK  6(3Q13.31) WILD-TYPE     89     84    108    108
D26V5, multiclass
        clus
vv       DEL PEAK  6(3Q13.31) MUTATED DEL PEAK  6(3Q13.31) WILD-TYPE
  CLUS_1                            2                             89
  CLUS_2                           11                             84
  CLUS_3                           17                            108
  CLUS_4                            7                            108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q13.31) MUTATED        3     10     24
  DEL PEAK  6(3Q13.31) WILD-TYPE     80    148    161
D26V6, multiclass
        clus
vv       DEL PEAK  6(3Q13.31) MUTATED DEL PEAK  6(3Q13.31) WILD-TYPE
  CLUS_1                            3                             80
  CLUS_2                           10                            148
  CLUS_3                           24                            161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3Q13.31) MUTATED       13     10      3     11      2
  DEL PEAK  6(3Q13.31) WILD-TYPE    117    105    102    122     28
D26V7, multiclass
        clus
vv       DEL PEAK  6(3Q13.31) MUTATED DEL PEAK  6(3Q13.31) WILD-TYPE
  CLUS_1                           13                            117
  CLUS_2                           10                            105
  CLUS_3                            3                            102
  CLUS_4                           11                            122
  CLUS_5                            2                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3Q13.31) MUTATED       14      4      1      7      2      8
  DEL PEAK  6(3Q13.31) WILD-TYPE    121     67     35     61     88     33
                                vv
clus                             CLUS_7
  DEL PEAK  6(3Q13.31) MUTATED        3
  DEL PEAK  6(3Q13.31) WILD-TYPE     69
D26V8, multiclass
        clus
vv       DEL PEAK  6(3Q13.31) MUTATED DEL PEAK  6(3Q13.31) WILD-TYPE
  CLUS_1                           14                            121
  CLUS_2                            4                             67
  CLUS_3                            1                             35
  CLUS_4                            7                             61
  CLUS_5                            2                             88
  CLUS_6                            8                             33
  CLUS_7                            3                             69
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3Q13.31) MUTATED        9     14      4     12
  DEL PEAK  6(3Q13.31) WILD-TYPE    131     93     78    168
D26V9, multiclass
        clus
vv       DEL PEAK  6(3Q13.31) MUTATED DEL PEAK  6(3Q13.31) WILD-TYPE
  CLUS_1                            9                            131
  CLUS_2                           14                             93
  CLUS_3                            4                             78
  CLUS_4                           12                            168
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q13.31) MUTATED       16      6     17
  DEL PEAK  6(3Q13.31) WILD-TYPE    206    178     86
D26V10, multiclass
        clus
vv       DEL PEAK  6(3Q13.31) MUTATED DEL PEAK  6(3Q13.31) WILD-TYPE
  CLUS_1                           16                            206
  CLUS_2                            6                            178
  CLUS_3                           17                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3Q13.31) MUTATED       15      9      5      9
  DEL PEAK  6(3Q13.31) WILD-TYPE    112    110    100    145
D26V11, multiclass
        clus
vv       DEL PEAK  6(3Q13.31) MUTATED DEL PEAK  6(3Q13.31) WILD-TYPE
  CLUS_1                           15                            112
  CLUS_2                            9                            110
  CLUS_3                            5                            100
  CLUS_4                            9                            145
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3Q13.31) MUTATED       10     11      5      2      4      6
  DEL PEAK  6(3Q13.31) WILD-TYPE     89     66    113     54     59     86
D26V12, multiclass
        clus
vv       DEL PEAK  6(3Q13.31) MUTATED DEL PEAK  6(3Q13.31) WILD-TYPE
  CLUS_1                           10                             89
  CLUS_2                           11                             66
  CLUS_3                            5                            113
  CLUS_4                            2                             54
  CLUS_5                            4                             59
  CLUS_6                            6                             86
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK  7(3Q29) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q29) MUTATED        1      0      2
  DEL PEAK  7(3Q29) WILD-TYPE      8     10      6
D27V1, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                         1                           8
  CLUS_2                         0                          10
  CLUS_3                         2                           6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q29) MUTATED        1      1      0      1
  DEL PEAK  7(3Q29) WILD-TYPE      6      6      7      5
D27V2, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                         1                           6
  CLUS_2                         1                           6
  CLUS_3                         0                           7
  CLUS_4                         1                           5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q29) MUTATED       27     15      5
  DEL PEAK  7(3Q29) WILD-TYPE    200     96    170
D27V3, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        27                         200
  CLUS_2                        15                          96
  CLUS_3                         5                         170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q29) MUTATED       28      9      4      6
  DEL PEAK  7(3Q29) WILD-TYPE    181    125    153      7
D27V4, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        28                         181
  CLUS_2                         9                         125
  CLUS_3                         4                         153
  CLUS_4                         6                           7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q29) MUTATED        8     13     12      8
  DEL PEAK  7(3Q29) WILD-TYPE     83     82    113    107
D27V5, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                         8                          83
  CLUS_2                        13                          82
  CLUS_3                        12                         113
  CLUS_4                         8                         107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q29) MUTATED        7     13     21
  DEL PEAK  7(3Q29) WILD-TYPE     76    145    164
D27V6, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                         7                          76
  CLUS_2                        13                         145
  CLUS_3                        21                         164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3Q29) MUTATED       16     16      2     11      2
  DEL PEAK  7(3Q29) WILD-TYPE    114     99    103    122     28
D27V7, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        16                         114
  CLUS_2                        16                          99
  CLUS_3                         2                         103
  CLUS_4                        11                         122
  CLUS_5                         2                          28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  7(3Q29) MUTATED       16      5      1      6      2     13      4
  DEL PEAK  7(3Q29) WILD-TYPE    119     66     35     62     88     28     68
D27V8, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        16                         119
  CLUS_2                         5                          66
  CLUS_3                         1                          35
  CLUS_4                         6                          62
  CLUS_5                         2                          88
  CLUS_6                        13                          28
  CLUS_7                         4                          68
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q29) MUTATED       13     16      5     13
  DEL PEAK  7(3Q29) WILD-TYPE    127     91     77    167
D27V9, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        13                         127
  CLUS_2                        16                          91
  CLUS_3                         5                          77
  CLUS_4                        13                         167
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q29) MUTATED       19     10     18
  DEL PEAK  7(3Q29) WILD-TYPE    203    174     85
D27V10, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        19                         203
  CLUS_2                        10                         174
  CLUS_3                        18                          85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q29) MUTATED       16     14      6     10
  DEL PEAK  7(3Q29) WILD-TYPE    111    105     99    144
D27V11, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        16                         111
  CLUS_2                        14                         105
  CLUS_3                         6                          99
  CLUS_4                        10                         144
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3Q29) MUTATED       11     13      6      2      5      9
  DEL PEAK  7(3Q29) WILD-TYPE     88     64    112     54     58     83
D27V12, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        11                          88
  CLUS_2                        13                          64
  CLUS_3                         6                         112
  CLUS_4                         2                          54
  CLUS_5                         5                          58
  CLUS_6                         9                          83
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK  8(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q34.3) MUTATED        4      4      3
  DEL PEAK  8(4Q34.3) WILD-TYPE      5      6      5
D28V1, multiclass
        clus
vv       DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE
  CLUS_1                           4                             5
  CLUS_2                           4                             6
  CLUS_3                           3                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q34.3) MUTATED        2      5      2      2
  DEL PEAK  8(4Q34.3) WILD-TYPE      5      2      5      4
D28V2, multiclass
        clus
vv       DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE
  CLUS_1                           2                             5
  CLUS_2                           5                             2
  CLUS_3                           2                             5
  CLUS_4                           2                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q34.3) MUTATED       50     34     53
  DEL PEAK  8(4Q34.3) WILD-TYPE    177     77    122
D28V3, multiclass
        clus
vv       DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE
  CLUS_1                          50                           177
  CLUS_2                          34                            77
  CLUS_3                          53                           122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q34.3) MUTATED       68     14     50      5
  DEL PEAK  8(4Q34.3) WILD-TYPE    141    120    107      8
D28V4, multiclass
        clus
vv       DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE
  CLUS_1                          68                           141
  CLUS_2                          14                           120
  CLUS_3                          50                           107
  CLUS_4                           5                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q34.3) MUTATED       16     34     34     28
  DEL PEAK  8(4Q34.3) WILD-TYPE     75     61     91     87
D28V5, multiclass
        clus
vv       DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE
  CLUS_1                          16                            75
  CLUS_2                          34                            61
  CLUS_3                          34                            91
  CLUS_4                          28                            87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q34.3) MUTATED       17     42     53
  DEL PEAK  8(4Q34.3) WILD-TYPE     66    116    132
D28V6, multiclass
        clus
vv       DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE
  CLUS_1                          17                            66
  CLUS_2                          42                           116
  CLUS_3                          53                           132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4Q34.3) MUTATED       38     22     33     40      4
  DEL PEAK  8(4Q34.3) WILD-TYPE     92     93     72     93     26
D28V7, multiclass
        clus
vv       DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE
  CLUS_1                          38                            92
  CLUS_2                          22                            93
  CLUS_3                          33                            72
  CLUS_4                          40                            93
  CLUS_5                           4                            26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(4Q34.3) MUTATED       36      5     17     18     25     16
  DEL PEAK  8(4Q34.3) WILD-TYPE     99     66     19     50     65     25
                               vv
clus                            CLUS_7
  DEL PEAK  8(4Q34.3) MUTATED       20
  DEL PEAK  8(4Q34.3) WILD-TYPE     52
D28V8, multiclass
        clus
vv       DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE
  CLUS_1                          36                            99
  CLUS_2                           5                            66
  CLUS_3                          17                            19
  CLUS_4                          18                            50
  CLUS_5                          25                            65
  CLUS_6                          16                            25
  CLUS_7                          20                            52
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q34.3) MUTATED       26     30     30     50
  DEL PEAK  8(4Q34.3) WILD-TYPE    114     77     52    130
D28V9, multiclass
        clus
vv       DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE
  CLUS_1                          26                           114
  CLUS_2                          30                            77
  CLUS_3                          30                            52
  CLUS_4                          50                           130
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q34.3) MUTATED       62     56     18
  DEL PEAK  8(4Q34.3) WILD-TYPE    160    128     85
D28V10, multiclass
        clus
vv       DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE
  CLUS_1                          62                           160
  CLUS_2                          56                           128
  CLUS_3                          18                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q34.3) MUTATED       30     31     32     43
  DEL PEAK  8(4Q34.3) WILD-TYPE     97     88     73    111
D28V11, multiclass
        clus
vv       DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE
  CLUS_1                          30                            97
  CLUS_2                          31                            88
  CLUS_3                          32                            73
  CLUS_4                          43                           111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(4Q34.3) MUTATED       22     30     31     18      4     31
  DEL PEAK  8(4Q34.3) WILD-TYPE     77     47     87     38     59     61
D28V12, multiclass
        clus
vv       DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE
  CLUS_1                          22                            77
  CLUS_2                          30                            47
  CLUS_3                          31                            87
  CLUS_4                          18                            38
  CLUS_5                           4                            59
  CLUS_6                          31                            61
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK  9(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5P15.33) MUTATED        2      3      2
  DEL PEAK  9(5P15.33) WILD-TYPE      7      7      6
D29V1, multiclass
        clus
vv       DEL PEAK  9(5P15.33) MUTATED DEL PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            3                              7
  CLUS_3                            2                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5P15.33) MUTATED        1      4      0      2
  DEL PEAK  9(5P15.33) WILD-TYPE      6      3      7      4
D29V2, multiclass
        clus
vv       DEL PEAK  9(5P15.33) MUTATED DEL PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                            1                              6
  CLUS_2                            4                              3
  CLUS_3                            0                              7
  CLUS_4                            2                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5P15.33) MUTATED       27     20      3
  DEL PEAK  9(5P15.33) WILD-TYPE    200     91    172
D29V3, multiclass
        clus
vv       DEL PEAK  9(5P15.33) MUTATED DEL PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           27                            200
  CLUS_2                           20                             91
  CLUS_3                            3                            172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5P15.33) MUTATED       34     10      3      3
  DEL PEAK  9(5P15.33) WILD-TYPE    175    124    154     10
D29V4, multiclass
        clus
vv       DEL PEAK  9(5P15.33) MUTATED DEL PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           34                            175
  CLUS_2                           10                            124
  CLUS_3                            3                            154
  CLUS_4                            3                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5P15.33) MUTATED        8     12     14     10
  DEL PEAK  9(5P15.33) WILD-TYPE     83     83    111    105
D29V5, multiclass
        clus
vv       DEL PEAK  9(5P15.33) MUTATED DEL PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                            8                             83
  CLUS_2                           12                             83
  CLUS_3                           14                            111
  CLUS_4                           10                            105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5P15.33) MUTATED        8     14     22
  DEL PEAK  9(5P15.33) WILD-TYPE     75    144    163
D29V6, multiclass
        clus
vv       DEL PEAK  9(5P15.33) MUTATED DEL PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                            8                             75
  CLUS_2                           14                            144
  CLUS_3                           22                            163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(5P15.33) MUTATED       14     18      1     13      4
  DEL PEAK  9(5P15.33) WILD-TYPE    116     97    104    120     26
D29V7, multiclass
        clus
vv       DEL PEAK  9(5P15.33) MUTATED DEL PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           14                            116
  CLUS_2                           18                             97
  CLUS_3                            1                            104
  CLUS_4                           13                            120
  CLUS_5                            4                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(5P15.33) MUTATED       17      4      0      9      2     12
  DEL PEAK  9(5P15.33) WILD-TYPE    118     67     36     59     88     29
                                vv
clus                             CLUS_7
  DEL PEAK  9(5P15.33) MUTATED        6
  DEL PEAK  9(5P15.33) WILD-TYPE     66
D29V8, multiclass
        clus
vv       DEL PEAK  9(5P15.33) MUTATED DEL PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           17                            118
  CLUS_2                            4                             67
  CLUS_3                            0                             36
  CLUS_4                            9                             59
  CLUS_5                            2                             88
  CLUS_6                           12                             29
  CLUS_7                            6                             66
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5P15.33) MUTATED       10     20      3     17
  DEL PEAK  9(5P15.33) WILD-TYPE    130     87     79    163
D29V9, multiclass
        clus
vv       DEL PEAK  9(5P15.33) MUTATED DEL PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           10                            130
  CLUS_2                           20                             87
  CLUS_3                            3                             79
  CLUS_4                           17                            163
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5P15.33) MUTATED       20     15     15
  DEL PEAK  9(5P15.33) WILD-TYPE    202    169     88
D29V10, multiclass
        clus
vv       DEL PEAK  9(5P15.33) MUTATED DEL PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           20                            202
  CLUS_2                           15                            169
  CLUS_3                           15                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5P15.33) MUTATED       14     20      3     13
  DEL PEAK  9(5P15.33) WILD-TYPE    113     99    102    141
D29V11, multiclass
        clus
vv       DEL PEAK  9(5P15.33) MUTATED DEL PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           14                            113
  CLUS_2                           20                             99
  CLUS_3                            3                            102
  CLUS_4                           13                            141
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(5P15.33) MUTATED        7     20      9      0      4     10
  DEL PEAK  9(5P15.33) WILD-TYPE     92     57    109     56     59     82
D29V12, multiclass
        clus
vv       DEL PEAK  9(5P15.33) MUTATED DEL PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                            7                             92
  CLUS_2                           20                             57
  CLUS_3                            9                            109
  CLUS_4                            0                             56
  CLUS_5                            4                             59
  CLUS_6                           10                             82
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK 10(5Q34) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q34) MUTATED        1      2      3
  DEL PEAK 10(5Q34) WILD-TYPE      8      8      5
D30V1, multiclass
        clus
vv       DEL PEAK 10(5Q34) MUTATED DEL PEAK 10(5Q34) WILD-TYPE
  CLUS_1                         1                           8
  CLUS_2                         2                           8
  CLUS_3                         3                           5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q34) MUTATED        1      3      0      2
  DEL PEAK 10(5Q34) WILD-TYPE      6      4      7      4
D30V2, multiclass
        clus
vv       DEL PEAK 10(5Q34) MUTATED DEL PEAK 10(5Q34) WILD-TYPE
  CLUS_1                         1                           6
  CLUS_2                         3                           4
  CLUS_3                         0                           7
  CLUS_4                         2                           4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q34) MUTATED       41     19      4
  DEL PEAK 10(5Q34) WILD-TYPE    186     92    171
D30V3, multiclass
        clus
vv       DEL PEAK 10(5Q34) MUTATED DEL PEAK 10(5Q34) WILD-TYPE
  CLUS_1                        41                         186
  CLUS_2                        19                          92
  CLUS_3                         4                         171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q34) MUTATED       41     11      3      9
  DEL PEAK 10(5Q34) WILD-TYPE    168    123    154      4
D30V4, multiclass
        clus
vv       DEL PEAK 10(5Q34) MUTATED DEL PEAK 10(5Q34) WILD-TYPE
  CLUS_1                        41                         168
  CLUS_2                        11                         123
  CLUS_3                         3                         154
  CLUS_4                         9                           4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q34) MUTATED       10     19     13      9
  DEL PEAK 10(5Q34) WILD-TYPE     81     76    112    106
D30V5, multiclass
        clus
vv       DEL PEAK 10(5Q34) MUTATED DEL PEAK 10(5Q34) WILD-TYPE
  CLUS_1                        10                          81
  CLUS_2                        19                          76
  CLUS_3                        13                         112
  CLUS_4                         9                         106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q34) MUTATED       15     13     23
  DEL PEAK 10(5Q34) WILD-TYPE     68    145    162
D30V6, multiclass
        clus
vv       DEL PEAK 10(5Q34) MUTATED DEL PEAK 10(5Q34) WILD-TYPE
  CLUS_1                        15                          68
  CLUS_2                        13                         145
  CLUS_3                        23                         162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(5Q34) MUTATED       19     24      2     14      5
  DEL PEAK 10(5Q34) WILD-TYPE    111     91    103    119     25
D30V7, multiclass
        clus
vv       DEL PEAK 10(5Q34) MUTATED DEL PEAK 10(5Q34) WILD-TYPE
  CLUS_1                        19                         111
  CLUS_2                        24                          91
  CLUS_3                         2                         103
  CLUS_4                        14                         119
  CLUS_5                         5                          25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 10(5Q34) MUTATED       20      3      0     11      3     22      5
  DEL PEAK 10(5Q34) WILD-TYPE    115     68     36     57     87     19     67
D30V8, multiclass
        clus
vv       DEL PEAK 10(5Q34) MUTATED DEL PEAK 10(5Q34) WILD-TYPE
  CLUS_1                        20                         115
  CLUS_2                         3                          68
  CLUS_3                         0                          36
  CLUS_4                        11                          57
  CLUS_5                         3                          87
  CLUS_6                        22                          19
  CLUS_7                         5                          67
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q34) MUTATED       14     29      4     17
  DEL PEAK 10(5Q34) WILD-TYPE    126     78     78    163
D30V9, multiclass
        clus
vv       DEL PEAK 10(5Q34) MUTATED DEL PEAK 10(5Q34) WILD-TYPE
  CLUS_1                        14                         126
  CLUS_2                        29                          78
  CLUS_3                         4                          78
  CLUS_4                        17                         163
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q34) MUTATED       26     19     19
  DEL PEAK 10(5Q34) WILD-TYPE    196    165     84
D30V10, multiclass
        clus
vv       DEL PEAK 10(5Q34) MUTATED DEL PEAK 10(5Q34) WILD-TYPE
  CLUS_1                        26                         196
  CLUS_2                        19                         165
  CLUS_3                        19                          84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q34) MUTATED       20     23      6     15
  DEL PEAK 10(5Q34) WILD-TYPE    107     96     99    139
D30V11, multiclass
        clus
vv       DEL PEAK 10(5Q34) MUTATED DEL PEAK 10(5Q34) WILD-TYPE
  CLUS_1                        20                         107
  CLUS_2                        23                          96
  CLUS_3                         6                          99
  CLUS_4                        15                         139
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(5Q34) MUTATED       14     23     10      0      3     14
  DEL PEAK 10(5Q34) WILD-TYPE     85     54    108     56     60     78
D30V12, multiclass
        clus
vv       DEL PEAK 10(5Q34) MUTATED DEL PEAK 10(5Q34) WILD-TYPE
  CLUS_1                        14                          85
  CLUS_2                        23                          54
  CLUS_3                        10                         108
  CLUS_4                         0                          56
  CLUS_5                         3                          60
  CLUS_6                        14                          78
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK 11(6P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6P25.3) MUTATED        0      0      1
  DEL PEAK 11(6P25.3) WILD-TYPE      9     10      7
D31V1, multiclass
[1] "Remove cluster labels:"      "DEL PEAK 11(6P25.3) MUTATED"
clus
  DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE 
                            1                            26 
                   TCGA-CS-4942                    TCGA-CS-4943 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-CS-4944                    TCGA-CS-5390 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-CS-5394                    TCGA-CS-5395 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-CS-5396                    TCGA-DB-5270 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-DB-5273                    TCGA-DB-5274 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-DB-5275                    TCGA-DB-5276 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-DB-5278                    TCGA-DB-5280 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-DB-5281                    TCGA-DH-5140 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-DH-5141                    TCGA-DH-5142 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-DH-5143                    TCGA-DH-5144 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-E1-5302                    TCGA-E1-5303 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-E1-5304                    TCGA-E1-5311 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-E1-5318                    TCGA-E1-5322 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6P25.3) MUTATED        0      1      0      0
  DEL PEAK 11(6P25.3) WILD-TYPE      7      6      7      6
D31V2, multiclass
[1] "Remove cluster labels:"      "DEL PEAK 11(6P25.3) MUTATED"
clus
  DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE 
                            1                            26 
                   TCGA-CS-4942                    TCGA-CS-4943 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-CS-4944                    TCGA-CS-5390 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-CS-5394                    TCGA-CS-5395 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-CS-5396                    TCGA-DB-5270 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-DB-5273                    TCGA-DB-5274 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-DB-5275                    TCGA-DB-5276 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-DB-5278                    TCGA-DB-5280 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-DB-5281                    TCGA-DH-5140 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-DH-5141                    TCGA-DH-5142 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-DH-5143                    TCGA-DH-5144 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-E1-5302                    TCGA-E1-5303 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-E1-5304                    TCGA-E1-5311 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-E1-5318                    TCGA-E1-5322 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6P25.3) MUTATED       21     23      6
  DEL PEAK 11(6P25.3) WILD-TYPE    206     88    169
D31V3, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                          21                           206
  CLUS_2                          23                            88
  CLUS_3                           6                           169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6P25.3) MUTATED       24     14      8      4
  DEL PEAK 11(6P25.3) WILD-TYPE    185    120    149      9
D31V4, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                          24                           185
  CLUS_2                          14                           120
  CLUS_3                           8                           149
  CLUS_4                           4                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6P25.3) MUTATED        6     14     11     14
  DEL PEAK 11(6P25.3) WILD-TYPE     85     81    114    101
D31V5, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                           6                            85
  CLUS_2                          14                            81
  CLUS_3                          11                           114
  CLUS_4                          14                           101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6P25.3) MUTATED        5     18     22
  DEL PEAK 11(6P25.3) WILD-TYPE     78    140    163
D31V6, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                           5                            78
  CLUS_2                          18                           140
  CLUS_3                          22                           163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(6P25.3) MUTATED       13     17      6     10      4
  DEL PEAK 11(6P25.3) WILD-TYPE    117     98     99    123     26
D31V7, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                          13                           117
  CLUS_2                          17                            98
  CLUS_3                           6                            99
  CLUS_4                          10                           123
  CLUS_5                           4                            26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6P25.3) MUTATED       15     11      1      8      7      6
  DEL PEAK 11(6P25.3) WILD-TYPE    120     60     35     60     83     35
                               vv
clus                            CLUS_7
  DEL PEAK 11(6P25.3) MUTATED        2
  DEL PEAK 11(6P25.3) WILD-TYPE     70
D31V8, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                          15                           120
  CLUS_2                          11                            60
  CLUS_3                           1                            35
  CLUS_4                           8                            60
  CLUS_5                           7                            83
  CLUS_6                           6                            35
  CLUS_7                           2                            70
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6P25.3) MUTATED       17     12      8     13
  DEL PEAK 11(6P25.3) WILD-TYPE    123     95     74    167
D31V9, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                          17                           123
  CLUS_2                          12                            95
  CLUS_3                           8                            74
  CLUS_4                          13                           167
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6P25.3) MUTATED       22     14     14
  DEL PEAK 11(6P25.3) WILD-TYPE    200    170     89
D31V10, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                          22                           200
  CLUS_2                          14                           170
  CLUS_3                          14                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6P25.3) MUTATED       14     16      7     12
  DEL PEAK 11(6P25.3) WILD-TYPE    113    103     98    142
D31V11, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                          14                           113
  CLUS_2                          16                           103
  CLUS_3                           7                            98
  CLUS_4                          12                           142
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6P25.3) MUTATED       10      9      5      4     11     10
  DEL PEAK 11(6P25.3) WILD-TYPE     89     68    113     52     52     82
D31V12, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                          10                            89
  CLUS_2                           9                            68
  CLUS_3                           5                           113
  CLUS_4                           4                            52
  CLUS_5                          11                            52
  CLUS_6                          10                            82
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK 12(6Q22.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q22.31) MUTATED        2      1      0
  DEL PEAK 12(6Q22.31) WILD-TYPE      7      9      8
D32V1, multiclass
        clus
vv       DEL PEAK 12(6Q22.31) MUTATED DEL PEAK 12(6Q22.31) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            1                              9
  CLUS_3                            0                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q22.31) MUTATED        2      1      0      0
  DEL PEAK 12(6Q22.31) WILD-TYPE      5      6      7      6
D32V2, multiclass
        clus
vv       DEL PEAK 12(6Q22.31) MUTATED DEL PEAK 12(6Q22.31) WILD-TYPE
  CLUS_1                            2                              5
  CLUS_2                            1                              6
  CLUS_3                            0                              7
  CLUS_4                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q22.31) MUTATED       31     41      6
  DEL PEAK 12(6Q22.31) WILD-TYPE    196     70    169
D32V3, multiclass
        clus
vv       DEL PEAK 12(6Q22.31) MUTATED DEL PEAK 12(6Q22.31) WILD-TYPE
  CLUS_1                           31                            196
  CLUS_2                           41                             70
  CLUS_3                            6                            169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q22.31) MUTATED       44     23      7      4
  DEL PEAK 12(6Q22.31) WILD-TYPE    165    111    150      9
D32V4, multiclass
        clus
vv       DEL PEAK 12(6Q22.31) MUTATED DEL PEAK 12(6Q22.31) WILD-TYPE
  CLUS_1                           44                            165
  CLUS_2                           23                            111
  CLUS_3                            7                            150
  CLUS_4                            4                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q22.31) MUTATED       10     23     20     14
  DEL PEAK 12(6Q22.31) WILD-TYPE     81     72    105    101
D32V5, multiclass
        clus
vv       DEL PEAK 12(6Q22.31) MUTATED DEL PEAK 12(6Q22.31) WILD-TYPE
  CLUS_1                           10                             81
  CLUS_2                           23                             72
  CLUS_3                           20                            105
  CLUS_4                           14                            101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q22.31) MUTATED       10     17     40
  DEL PEAK 12(6Q22.31) WILD-TYPE     73    141    145
D32V6, multiclass
        clus
vv       DEL PEAK 12(6Q22.31) MUTATED DEL PEAK 12(6Q22.31) WILD-TYPE
  CLUS_1                           10                             73
  CLUS_2                           17                            141
  CLUS_3                           40                            145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6Q22.31) MUTATED       25     26      6     17      4
  DEL PEAK 12(6Q22.31) WILD-TYPE    105     89     99    116     26
D32V7, multiclass
        clus
vv       DEL PEAK 12(6Q22.31) MUTATED DEL PEAK 12(6Q22.31) WILD-TYPE
  CLUS_1                           25                            105
  CLUS_2                           26                             89
  CLUS_3                            6                             99
  CLUS_4                           17                            116
  CLUS_5                            4                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6Q22.31) MUTATED       27     16      1     12      6     10
  DEL PEAK 12(6Q22.31) WILD-TYPE    108     55     35     56     84     31
                                vv
clus                             CLUS_7
  DEL PEAK 12(6Q22.31) MUTATED        6
  DEL PEAK 12(6Q22.31) WILD-TYPE     66
D32V8, multiclass
        clus
vv       DEL PEAK 12(6Q22.31) MUTATED DEL PEAK 12(6Q22.31) WILD-TYPE
  CLUS_1                           27                            108
  CLUS_2                           16                             55
  CLUS_3                            1                             35
  CLUS_4                           12                             56
  CLUS_5                            6                             84
  CLUS_6                           10                             31
  CLUS_7                            6                             66
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q22.31) MUTATED       35     17      6     19
  DEL PEAK 12(6Q22.31) WILD-TYPE    105     90     76    161
D32V9, multiclass
        clus
vv       DEL PEAK 12(6Q22.31) MUTATED DEL PEAK 12(6Q22.31) WILD-TYPE
  CLUS_1                           35                            105
  CLUS_2                           17                             90
  CLUS_3                            6                             76
  CLUS_4                           19                            161
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q22.31) MUTATED       35     21     21
  DEL PEAK 12(6Q22.31) WILD-TYPE    187    163     82
D32V10, multiclass
        clus
vv       DEL PEAK 12(6Q22.31) MUTATED DEL PEAK 12(6Q22.31) WILD-TYPE
  CLUS_1                           35                            187
  CLUS_2                           21                            163
  CLUS_3                           21                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q22.31) MUTATED       29     21      7     18
  DEL PEAK 12(6Q22.31) WILD-TYPE     98     98     98    136
D32V11, multiclass
        clus
vv       DEL PEAK 12(6Q22.31) MUTATED DEL PEAK 12(6Q22.31) WILD-TYPE
  CLUS_1                           29                             98
  CLUS_2                           21                             98
  CLUS_3                            7                             98
  CLUS_4                           18                            136
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6Q22.31) MUTATED       24      9     13      5     16      8
  DEL PEAK 12(6Q22.31) WILD-TYPE     75     68    105     51     47     84
D32V12, multiclass
        clus
vv       DEL PEAK 12(6Q22.31) MUTATED DEL PEAK 12(6Q22.31) WILD-TYPE
  CLUS_1                           24                             75
  CLUS_2                            9                             68
  CLUS_3                           13                            105
  CLUS_4                            5                             51
  CLUS_5                           16                             47
  CLUS_6                            8                             84
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK 13(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED        3      0      0
  DEL PEAK 13(6Q26) WILD-TYPE      6     10      8
D33V1, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         3                           6
  CLUS_2                         0                          10
  CLUS_3                         0                           8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q26) MUTATED        2      1      0      0
  DEL PEAK 13(6Q26) WILD-TYPE      5      6      7      6
D33V2, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         2                           5
  CLUS_2                         1                           6
  CLUS_3                         0                           7
  CLUS_4                         0                           6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED       33     42      7
  DEL PEAK 13(6Q26) WILD-TYPE    194     69    168
D33V3, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        33                         194
  CLUS_2                        42                          69
  CLUS_3                         7                         168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q26) MUTATED       47     25      7      3
  DEL PEAK 13(6Q26) WILD-TYPE    162    109    150     10
D33V4, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        47                         162
  CLUS_2                        25                         109
  CLUS_3                         7                         150
  CLUS_4                         3                          10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q26) MUTATED       12     22     22     13
  DEL PEAK 13(6Q26) WILD-TYPE     79     73    103    102
D33V5, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        12                          79
  CLUS_2                        22                          73
  CLUS_3                        22                         103
  CLUS_4                        13                         102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED       12     16     41
  DEL PEAK 13(6Q26) WILD-TYPE     71    142    144
D33V6, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        12                          71
  CLUS_2                        16                         142
  CLUS_3                        41                         144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6Q26) MUTATED       31     25      6     16      4
  DEL PEAK 13(6Q26) WILD-TYPE     99     90     99    117     26
D33V7, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        31                          99
  CLUS_2                        25                          90
  CLUS_3                         6                          99
  CLUS_4                        16                         117
  CLUS_5                         4                          26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 13(6Q26) MUTATED       33     17      1     12      6      7      6
  DEL PEAK 13(6Q26) WILD-TYPE    102     54     35     56     84     34     66
D33V8, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        33                         102
  CLUS_2                        17                          54
  CLUS_3                         1                          35
  CLUS_4                        12                          56
  CLUS_5                         6                          84
  CLUS_6                         7                          34
  CLUS_7                         6                          66
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q26) MUTATED       40     16      5     20
  DEL PEAK 13(6Q26) WILD-TYPE    100     91     77    160
D33V9, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        40                         100
  CLUS_2                        16                          91
  CLUS_3                         5                          77
  CLUS_4                        20                         160
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED       39     22     20
  DEL PEAK 13(6Q26) WILD-TYPE    183    162     83
D33V10, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        39                         183
  CLUS_2                        22                         162
  CLUS_3                        20                          83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q26) MUTATED       29     22      7     20
  DEL PEAK 13(6Q26) WILD-TYPE     98     97     98    134
D33V11, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        29                          98
  CLUS_2                        22                          97
  CLUS_3                         7                          98
  CLUS_4                        20                         134
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(6Q26) MUTATED       27      7     13      5     17      9
  DEL PEAK 13(6Q26) WILD-TYPE     72     70    105     51     46     83
D33V12, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        27                          72
  CLUS_2                         7                          70
  CLUS_3                        13                         105
  CLUS_4                         5                          51
  CLUS_5                        17                          46
  CLUS_6                         9                          83
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK 14(7P22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED        0      0      0
  DEL PEAK 14(7P22.3) WILD-TYPE      9     10      8
D34V1, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(7P22.3) MUTATED        0      0      0      0
  DEL PEAK 14(7P22.3) WILD-TYPE      7      7      7      6
D34V2, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED       17      2      4
  DEL PEAK 14(7P22.3) WILD-TYPE    210    109    171
D34V3, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                          17                           210
  CLUS_2                           2                           109
  CLUS_3                           4                           171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(7P22.3) MUTATED       15      3      4      1
  DEL PEAK 14(7P22.3) WILD-TYPE    194    131    153     12
D34V4, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                          15                           194
  CLUS_2                           3                           131
  CLUS_3                           4                           153
  CLUS_4                           1                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(7P22.3) MUTATED        3      3      8      2
  DEL PEAK 14(7P22.3) WILD-TYPE     88     92    117    113
D34V5, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           3                            88
  CLUS_2                           3                            92
  CLUS_3                           8                           117
  CLUS_4                           2                           113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED        2      3     11
  DEL PEAK 14(7P22.3) WILD-TYPE     81    155    174
D34V6, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           2                            81
  CLUS_2                           3                           155
  CLUS_3                          11                           174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(7P22.3) MUTATED        9      5      3      6      0
  DEL PEAK 14(7P22.3) WILD-TYPE    121    110    102    127     30
D34V7, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           9                           121
  CLUS_2                           5                           110
  CLUS_3                           3                           102
  CLUS_4                           6                           127
  CLUS_5                           0                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(7P22.3) MUTATED        9      3      1      4      3      2
  DEL PEAK 14(7P22.3) WILD-TYPE    126     68     35     64     87     39
                               vv
clus                            CLUS_7
  DEL PEAK 14(7P22.3) MUTATED        1
  DEL PEAK 14(7P22.3) WILD-TYPE     71
D34V8, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           9                           126
  CLUS_2                           3                            68
  CLUS_3                           1                            35
  CLUS_4                           4                            64
  CLUS_5                           3                            87
  CLUS_6                           2                            39
  CLUS_7                           1                            71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(7P22.3) MUTATED        7      4      6      6
  DEL PEAK 14(7P22.3) WILD-TYPE    133    103     76    174
D34V9, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           7                           133
  CLUS_2                           4                           103
  CLUS_3                           6                            76
  CLUS_4                           6                           174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED       15      6      2
  DEL PEAK 14(7P22.3) WILD-TYPE    207    178    101
D34V10, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                          15                           207
  CLUS_2                           6                           178
  CLUS_3                           2                           101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(7P22.3) MUTATED        7      5      6      4
  DEL PEAK 14(7P22.3) WILD-TYPE    120    114     99    150
D34V11, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           7                           120
  CLUS_2                           5                           114
  CLUS_3                           6                            99
  CLUS_4                           4                           150
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(7P22.3) MUTATED        7      3      2      2      2      6
  DEL PEAK 14(7P22.3) WILD-TYPE     92     74    116     54     61     86
D34V12, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           7                            92
  CLUS_2                           3                            74
  CLUS_3                           2                           116
  CLUS_4                           2                            54
  CLUS_5                           2                            61
  CLUS_6                           6                            86
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK 15(8Q24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8Q24.3) MUTATED        0      1      1
  DEL PEAK 15(8Q24.3) WILD-TYPE      9      9      7
D35V1, multiclass
[1] "Remove cluster labels:"      "DEL PEAK 15(8Q24.3) MUTATED"
clus
  DEL PEAK 15(8Q24.3) MUTATED DEL PEAK 15(8Q24.3) WILD-TYPE 
                            2                            25 
                   TCGA-CS-4942                    TCGA-CS-4943 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-CS-4944                    TCGA-CS-5390 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-CS-5394                    TCGA-CS-5395 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-CS-5396                    TCGA-DB-5270 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-DB-5273                    TCGA-DB-5274 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-DB-5275                    TCGA-DB-5276 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-DB-5277                    TCGA-DB-5278 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-DB-5280                    TCGA-DH-5141 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-DH-5142                    TCGA-DH-5143 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-DH-5144                    TCGA-E1-5302 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-E1-5303                    TCGA-E1-5304 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-E1-5311                    TCGA-E1-5318 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-E1-5322 
"DEL PEAK 15(8Q24.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8Q24.3) MUTATED        0      1      0      1
  DEL PEAK 15(8Q24.3) WILD-TYPE      7      6      7      5
D35V2, multiclass
[1] "Remove cluster labels:"      "DEL PEAK 15(8Q24.3) MUTATED"
clus
  DEL PEAK 15(8Q24.3) MUTATED DEL PEAK 15(8Q24.3) WILD-TYPE 
                            2                            25 
                   TCGA-CS-4942                    TCGA-CS-4943 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-CS-4944                    TCGA-CS-5390 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-CS-5394                    TCGA-CS-5395 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-CS-5396                    TCGA-DB-5270 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-DB-5273                    TCGA-DB-5274 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-DB-5275                    TCGA-DB-5276 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-DB-5277                    TCGA-DB-5278 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-DB-5280                    TCGA-DH-5141 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-DH-5142                    TCGA-DH-5143 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-DH-5144                    TCGA-E1-5302 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-E1-5303                    TCGA-E1-5304 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-E1-5311                    TCGA-E1-5318 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-E1-5322 
"DEL PEAK 15(8Q24.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8Q24.3) MUTATED       16     13      0
  DEL PEAK 15(8Q24.3) WILD-TYPE    211     98    175
D35V3, multiclass
        clus
vv       DEL PEAK 15(8Q24.3) MUTATED DEL PEAK 15(8Q24.3) WILD-TYPE
  CLUS_1                          16                           211
  CLUS_2                          13                            98
  CLUS_3                           0                           175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8Q24.3) MUTATED       17     11      0      1
  DEL PEAK 15(8Q24.3) WILD-TYPE    192    123    157     12
D35V4, multiclass
        clus
vv       DEL PEAK 15(8Q24.3) MUTATED DEL PEAK 15(8Q24.3) WILD-TYPE
  CLUS_1                          17                           192
  CLUS_2                          11                           123
  CLUS_3                           0                           157
  CLUS_4                           1                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8Q24.3) MUTATED        3      8      8      4
  DEL PEAK 15(8Q24.3) WILD-TYPE     88     87    117    111
D35V5, multiclass
        clus
vv       DEL PEAK 15(8Q24.3) MUTATED DEL PEAK 15(8Q24.3) WILD-TYPE
  CLUS_1                           3                            88
  CLUS_2                           8                            87
  CLUS_3                           8                           117
  CLUS_4                           4                           111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8Q24.3) MUTATED        3      5     15
  DEL PEAK 15(8Q24.3) WILD-TYPE     80    153    170
D35V6, multiclass
        clus
vv       DEL PEAK 15(8Q24.3) MUTATED DEL PEAK 15(8Q24.3) WILD-TYPE
  CLUS_1                           3                            80
  CLUS_2                           5                           153
  CLUS_3                          15                           170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8Q24.3) MUTATED       10     11      0      6      2
  DEL PEAK 15(8Q24.3) WILD-TYPE    120    104    105    127     28
D35V7, multiclass
        clus
vv       DEL PEAK 15(8Q24.3) MUTATED DEL PEAK 15(8Q24.3) WILD-TYPE
  CLUS_1                          10                           120
  CLUS_2                          11                           104
  CLUS_3                           0                           105
  CLUS_4                           6                           127
  CLUS_5                           2                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8Q24.3) MUTATED       10      9      0      4      0      3
  DEL PEAK 15(8Q24.3) WILD-TYPE    125     62     36     64     90     38
                               vv
clus                            CLUS_7
  DEL PEAK 15(8Q24.3) MUTATED        3
  DEL PEAK 15(8Q24.3) WILD-TYPE     69
D35V8, multiclass
        clus
vv       DEL PEAK 15(8Q24.3) MUTATED DEL PEAK 15(8Q24.3) WILD-TYPE
  CLUS_1                          10                           125
  CLUS_2                           9                            62
  CLUS_3                           0                            36
  CLUS_4                           4                            64
  CLUS_5                           0                            90
  CLUS_6                           3                            38
  CLUS_7                           3                            69
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8Q24.3) MUTATED       12      9      1      7
  DEL PEAK 15(8Q24.3) WILD-TYPE    128     98     81    173
D35V9, multiclass
        clus
vv       DEL PEAK 15(8Q24.3) MUTATED DEL PEAK 15(8Q24.3) WILD-TYPE
  CLUS_1                          12                           128
  CLUS_2                           9                            98
  CLUS_3                           1                            81
  CLUS_4                           7                           173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8Q24.3) MUTATED       11      5     13
  DEL PEAK 15(8Q24.3) WILD-TYPE    211    179     90
D35V10, multiclass
        clus
vv       DEL PEAK 15(8Q24.3) MUTATED DEL PEAK 15(8Q24.3) WILD-TYPE
  CLUS_1                          11                           211
  CLUS_2                           5                           179
  CLUS_3                          13                            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8Q24.3) MUTATED       10     11      2      5
  DEL PEAK 15(8Q24.3) WILD-TYPE    117    108    103    149
D35V11, multiclass
        clus
vv       DEL PEAK 15(8Q24.3) MUTATED DEL PEAK 15(8Q24.3) WILD-TYPE
  CLUS_1                          10                           117
  CLUS_2                          11                           108
  CLUS_3                           2                           103
  CLUS_4                           5                           149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8Q24.3) MUTATED        7      5      3      0      8      5
  DEL PEAK 15(8Q24.3) WILD-TYPE     92     72    115     56     55     87
D35V12, multiclass
        clus
vv       DEL PEAK 15(8Q24.3) MUTATED DEL PEAK 15(8Q24.3) WILD-TYPE
  CLUS_1                           7                            92
  CLUS_2                           5                            72
  CLUS_3                           3                           115
  CLUS_4                           0                            56
  CLUS_5                           8                            55
  CLUS_6                           5                            87
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK 16(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P23) MUTATED        1      2      3
  DEL PEAK 16(9P23) WILD-TYPE      8      8      5
D36V1, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                         1                           8
  CLUS_2                         2                           8
  CLUS_3                         3                           5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P23) MUTATED        1      3      1      1
  DEL PEAK 16(9P23) WILD-TYPE      6      4      6      5
D36V2, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                         1                           6
  CLUS_2                         3                           4
  CLUS_3                         1                           6
  CLUS_4                         1                           5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P23) MUTATED       65     58     27
  DEL PEAK 16(9P23) WILD-TYPE    162     53    148
D36V3, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        65                         162
  CLUS_2                        58                          53
  CLUS_3                        27                         148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P23) MUTATED       72     42     27      9
  DEL PEAK 16(9P23) WILD-TYPE    137     92    130      4
D36V4, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        72                         137
  CLUS_2                        42                          92
  CLUS_3                        27                         130
  CLUS_4                         9                           4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P23) MUTATED       21     42     38     28
  DEL PEAK 16(9P23) WILD-TYPE     70     53     87     87
D36V5, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        21                          70
  CLUS_2                        42                          53
  CLUS_3                        38                          87
  CLUS_4                        28                          87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P23) MUTATED       15     37     77
  DEL PEAK 16(9P23) WILD-TYPE     68    121    108
D36V6, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        15                          68
  CLUS_2                        37                         121
  CLUS_3                        77                         108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(9P23) MUTATED       34     44     20     44      8
  DEL PEAK 16(9P23) WILD-TYPE     96     71     85     89     22
D36V7, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        34                          96
  CLUS_2                        44                          71
  CLUS_3                        20                          85
  CLUS_4                        44                          89
  CLUS_5                         8                          22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 16(9P23) MUTATED       39     27     10     31     15     16     12
  DEL PEAK 16(9P23) WILD-TYPE     96     44     26     37     75     25     60
D36V8, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        39                          96
  CLUS_2                        27                          44
  CLUS_3                        10                          26
  CLUS_4                        31                          37
  CLUS_5                        15                          75
  CLUS_6                        16                          25
  CLUS_7                        12                          60
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P23) MUTATED       39     31     23     56
  DEL PEAK 16(9P23) WILD-TYPE    101     76     59    124
D36V9, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        39                         101
  CLUS_2                        31                          76
  CLUS_3                        23                          59
  CLUS_4                        56                         124
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P23) MUTATED       55     58     36
  DEL PEAK 16(9P23) WILD-TYPE    167    126     67
D36V10, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        55                         167
  CLUS_2                        58                         126
  CLUS_3                        36                          67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P23) MUTATED       39     41     25     43
  DEL PEAK 16(9P23) WILD-TYPE     88     78     80    111
D36V11, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        39                          88
  CLUS_2                        41                          78
  CLUS_3                        25                          80
  CLUS_4                        43                         111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9P23) MUTATED       30     21     34      8     27     28
  DEL PEAK 16(9P23) WILD-TYPE     69     56     84     48     36     64
D36V12, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        30                          69
  CLUS_2                        21                          56
  CLUS_3                        34                          84
  CLUS_4                         8                          48
  CLUS_5                        27                          36
  CLUS_6                        28                          64
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK 17(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P21.3) MUTATED        1      4      3
  DEL PEAK 17(9P21.3) WILD-TYPE      8      6      5
D37V1, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           4                             6
  CLUS_3                           3                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9P21.3) MUTATED        1      5      1      1
  DEL PEAK 17(9P21.3) WILD-TYPE      6      2      6      5
D37V2, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                           1                             6
  CLUS_2                           5                             2
  CLUS_3                           1                             6
  CLUS_4                           1                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P21.3) MUTATED       75     74     27
  DEL PEAK 17(9P21.3) WILD-TYPE    152     37    148
D37V3, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          75                           152
  CLUS_2                          74                            37
  CLUS_3                          27                           148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9P21.3) MUTATED       75     65     26     10
  DEL PEAK 17(9P21.3) WILD-TYPE    134     69    131      3
D37V4, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          75                           134
  CLUS_2                          65                            69
  CLUS_3                          26                           131
  CLUS_4                          10                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9P21.3) MUTATED       22     52     46     29
  DEL PEAK 17(9P21.3) WILD-TYPE     69     43     79     86
D37V5, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          22                            69
  CLUS_2                          52                            43
  CLUS_3                          46                            79
  CLUS_4                          29                            86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P21.3) MUTATED       14     38     97
  DEL PEAK 17(9P21.3) WILD-TYPE     69    120     88
D37V6, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          14                            69
  CLUS_2                          38                           120
  CLUS_3                          97                            88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(9P21.3) MUTATED       38     67     18     45      8
  DEL PEAK 17(9P21.3) WILD-TYPE     92     48     87     88     22
D37V7, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          38                            92
  CLUS_2                          67                            48
  CLUS_3                          18                            87
  CLUS_4                          45                            88
  CLUS_5                           8                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9P21.3) MUTATED       44     47     10     31     13     18
  DEL PEAK 17(9P21.3) WILD-TYPE     91     24     26     37     77     23
                               vv
clus                            CLUS_7
  DEL PEAK 17(9P21.3) MUTATED       13
  DEL PEAK 17(9P21.3) WILD-TYPE     59
D37V8, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          44                            91
  CLUS_2                          47                            24
  CLUS_3                          10                            26
  CLUS_4                          31                            37
  CLUS_5                          13                            77
  CLUS_6                          18                            23
  CLUS_7                          13                            59
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9P21.3) MUTATED       51     43     25     56
  DEL PEAK 17(9P21.3) WILD-TYPE     89     64     57    124
D37V9, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          51                            89
  CLUS_2                          43                            64
  CLUS_3                          25                            57
  CLUS_4                          56                           124
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P21.3) MUTATED       59     56     60
  DEL PEAK 17(9P21.3) WILD-TYPE    163    128     43
D37V10, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          59                           163
  CLUS_2                          56                           128
  CLUS_3                          60                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9P21.3) MUTATED       49     55     23     47
  DEL PEAK 17(9P21.3) WILD-TYPE     78     64     82    107
D37V11, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          49                            78
  CLUS_2                          55                            64
  CLUS_3                          23                            82
  CLUS_4                          47                           107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9P21.3) MUTATED       32     26     36      8     45     27
  DEL PEAK 17(9P21.3) WILD-TYPE     67     51     82     48     18     65
D37V12, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          32                            67
  CLUS_2                          26                            51
  CLUS_3                          36                            82
  CLUS_4                           8                            48
  CLUS_5                          45                            18
  CLUS_6                          27                            65
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 18(10Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q26.3) MUTATED        0      1      3
  DEL PEAK 18(10Q26.3) WILD-TYPE      9      9      5
D38V1, multiclass
        clus
vv       DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE
  CLUS_1                            0                              9
  CLUS_2                            1                              9
  CLUS_3                            3                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10Q26.3) MUTATED        1      2      0      1
  DEL PEAK 18(10Q26.3) WILD-TYPE      6      5      7      5
D38V2, multiclass
        clus
vv       DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE
  CLUS_1                            1                              6
  CLUS_2                            2                              5
  CLUS_3                            0                              7
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q26.3) MUTATED       68     73     10
  DEL PEAK 18(10Q26.3) WILD-TYPE    159     38    165
D38V3, multiclass
        clus
vv       DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE
  CLUS_1                           68                            159
  CLUS_2                           73                             38
  CLUS_3                           10                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10Q26.3) MUTATED       55     77      8     11
  DEL PEAK 18(10Q26.3) WILD-TYPE    154     57    149      2
D38V4, multiclass
        clus
vv       DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE
  CLUS_1                           55                            154
  CLUS_2                           77                             57
  CLUS_3                            8                            149
  CLUS_4                           11                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10Q26.3) MUTATED       20     41     33     23
  DEL PEAK 18(10Q26.3) WILD-TYPE     71     54     92     92
D38V5, multiclass
        clus
vv       DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE
  CLUS_1                           20                             71
  CLUS_2                           41                             54
  CLUS_3                           33                             92
  CLUS_4                           23                             92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q26.3) MUTATED       10     31     76
  DEL PEAK 18(10Q26.3) WILD-TYPE     73    127    109
D38V6, multiclass
        clus
vv       DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE
  CLUS_1                           10                             73
  CLUS_2                           31                            127
  CLUS_3                           76                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(10Q26.3) MUTATED       32     81      4     27      7
  DEL PEAK 18(10Q26.3) WILD-TYPE     98     34    101    106     23
D38V7, multiclass
        clus
vv       DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE
  CLUS_1                           32                             98
  CLUS_2                           81                             34
  CLUS_3                            4                            101
  CLUS_4                           27                            106
  CLUS_5                            7                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(10Q26.3) MUTATED       34     60      3     24      5     22
  DEL PEAK 18(10Q26.3) WILD-TYPE    101     11     33     44     85     19
                                vv
clus                             CLUS_7
  DEL PEAK 18(10Q26.3) MUTATED        3
  DEL PEAK 18(10Q26.3) WILD-TYPE     69
D38V8, multiclass
        clus
vv       DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE
  CLUS_1                           34                            101
  CLUS_2                           60                             11
  CLUS_3                            3                             33
  CLUS_4                           24                             44
  CLUS_5                            5                             85
  CLUS_6                           22                             19
  CLUS_7                            3                             69
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10Q26.3) MUTATED       55     46     11     39
  DEL PEAK 18(10Q26.3) WILD-TYPE     85     61     71    141
D38V9, multiclass
        clus
vv       DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE
  CLUS_1                           55                             85
  CLUS_2                           46                             61
  CLUS_3                           11                             71
  CLUS_4                           39                            141
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q26.3) MUTATED       49     28     74
  DEL PEAK 18(10Q26.3) WILD-TYPE    173    156     29
D38V10, multiclass
        clus
vv       DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE
  CLUS_1                           49                            173
  CLUS_2                           28                            156
  CLUS_3                           74                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10Q26.3) MUTATED       57     51     12     31
  DEL PEAK 18(10Q26.3) WILD-TYPE     70     68     93    123
D38V11, multiclass
        clus
vv       DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE
  CLUS_1                           57                             70
  CLUS_2                           51                             68
  CLUS_3                           12                             93
  CLUS_4                           31                            123
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(10Q26.3) MUTATED       28     23     20      3     55     22
  DEL PEAK 18(10Q26.3) WILD-TYPE     71     54     98     53      8     70
D38V12, multiclass
        clus
vv       DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE
  CLUS_1                           28                             71
  CLUS_2                           23                             54
  CLUS_3                           20                             98
  CLUS_4                            3                             53
  CLUS_5                           55                              8
  CLUS_6                           22                             70
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 19(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11P15.5) MUTATED        3      3      1
  DEL PEAK 19(11P15.5) WILD-TYPE      6      7      7
D39V1, multiclass
        clus
vv       DEL PEAK 19(11P15.5) MUTATED DEL PEAK 19(11P15.5) WILD-TYPE
  CLUS_1                            3                              6
  CLUS_2                            3                              7
  CLUS_3                            1                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(11P15.5) MUTATED        1      6      0      0
  DEL PEAK 19(11P15.5) WILD-TYPE      6      1      7      6
D39V2, multiclass
        clus
vv       DEL PEAK 19(11P15.5) MUTATED DEL PEAK 19(11P15.5) WILD-TYPE
  CLUS_1                            1                              6
  CLUS_2                            6                              1
  CLUS_3                            0                              7
  CLUS_4                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11P15.5) MUTATED       75     27      2
  DEL PEAK 19(11P15.5) WILD-TYPE    152     84    173
D39V3, multiclass
        clus
vv       DEL PEAK 19(11P15.5) MUTATED DEL PEAK 19(11P15.5) WILD-TYPE
  CLUS_1                           75                            152
  CLUS_2                           27                             84
  CLUS_3                            2                            173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(11P15.5) MUTATED       73     22      0      9
  DEL PEAK 19(11P15.5) WILD-TYPE    136    112    157      4
D39V4, multiclass
        clus
vv       DEL PEAK 19(11P15.5) MUTATED DEL PEAK 19(11P15.5) WILD-TYPE
  CLUS_1                           73                            136
  CLUS_2                           22                            112
  CLUS_3                            0                            157
  CLUS_4                            9                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(11P15.5) MUTATED       21     26     18     18
  DEL PEAK 19(11P15.5) WILD-TYPE     70     69    107     97
D39V5, multiclass
        clus
vv       DEL PEAK 19(11P15.5) MUTATED DEL PEAK 19(11P15.5) WILD-TYPE
  CLUS_1                           21                             70
  CLUS_2                           26                             69
  CLUS_3                           18                            107
  CLUS_4                           18                             97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11P15.5) MUTATED       15     30     38
  DEL PEAK 19(11P15.5) WILD-TYPE     68    128    147
D39V6, multiclass
        clus
vv       DEL PEAK 19(11P15.5) MUTATED DEL PEAK 19(11P15.5) WILD-TYPE
  CLUS_1                           15                             68
  CLUS_2                           30                            128
  CLUS_3                           38                            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(11P15.5) MUTATED       36     36      0     24      8
  DEL PEAK 19(11P15.5) WILD-TYPE     94     79    105    109     22
D39V7, multiclass
        clus
vv       DEL PEAK 19(11P15.5) MUTATED DEL PEAK 19(11P15.5) WILD-TYPE
  CLUS_1                           36                             94
  CLUS_2                           36                             79
  CLUS_3                            0                            105
  CLUS_4                           24                            109
  CLUS_5                            8                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(11P15.5) MUTATED       38      9      0     18      0     29
  DEL PEAK 19(11P15.5) WILD-TYPE     97     62     36     50     90     12
                                vv
clus                             CLUS_7
  DEL PEAK 19(11P15.5) MUTATED       10
  DEL PEAK 19(11P15.5) WILD-TYPE     62
D39V8, multiclass
        clus
vv       DEL PEAK 19(11P15.5) MUTATED DEL PEAK 19(11P15.5) WILD-TYPE
  CLUS_1                           38                             97
  CLUS_2                            9                             62
  CLUS_3                            0                             36
  CLUS_4                           18                             50
  CLUS_5                            0                             90
  CLUS_6                           29                             12
  CLUS_7                           10                             62
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(11P15.5) MUTATED       23     41      7     33
  DEL PEAK 19(11P15.5) WILD-TYPE    117     66     75    147
D39V9, multiclass
        clus
vv       DEL PEAK 19(11P15.5) MUTATED DEL PEAK 19(11P15.5) WILD-TYPE
  CLUS_1                           23                            117
  CLUS_2                           41                             66
  CLUS_3                            7                             75
  CLUS_4                           33                            147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11P15.5) MUTATED       42     29     33
  DEL PEAK 19(11P15.5) WILD-TYPE    180    155     70
D39V10, multiclass
        clus
vv       DEL PEAK 19(11P15.5) MUTATED DEL PEAK 19(11P15.5) WILD-TYPE
  CLUS_1                           42                            180
  CLUS_2                           29                            155
  CLUS_3                           33                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(11P15.5) MUTATED       33     31     11     28
  DEL PEAK 19(11P15.5) WILD-TYPE     94     88     94    126
D39V11, multiclass
        clus
vv       DEL PEAK 19(11P15.5) MUTATED DEL PEAK 19(11P15.5) WILD-TYPE
  CLUS_1                           33                             94
  CLUS_2                           31                             88
  CLUS_3                           11                             94
  CLUS_4                           28                            126
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(11P15.5) MUTATED       21     33     19      0      8     22
  DEL PEAK 19(11P15.5) WILD-TYPE     78     44     99     56     55     70
D39V12, multiclass
        clus
vv       DEL PEAK 19(11P15.5) MUTATED DEL PEAK 19(11P15.5) WILD-TYPE
  CLUS_1                           21                             78
  CLUS_2                           33                             44
  CLUS_3                           19                             99
  CLUS_4                            0                             56
  CLUS_5                            8                             55
  CLUS_6                           22                             70
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 20(11P15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11P15.1) MUTATED        2      2      1
  DEL PEAK 20(11P15.1) WILD-TYPE      7      8      7
D40V1, multiclass
        clus
vv       DEL PEAK 20(11P15.1) MUTATED DEL PEAK 20(11P15.1) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            2                              8
  CLUS_3                            1                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(11P15.1) MUTATED        1      4      0      0
  DEL PEAK 20(11P15.1) WILD-TYPE      6      3      7      6
D40V2, multiclass
        clus
vv       DEL PEAK 20(11P15.1) MUTATED DEL PEAK 20(11P15.1) WILD-TYPE
  CLUS_1                            1                              6
  CLUS_2                            4                              3
  CLUS_3                            0                              7
  CLUS_4                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11P15.1) MUTATED       47     23      2
  DEL PEAK 20(11P15.1) WILD-TYPE    180     88    173
D40V3, multiclass
        clus
vv       DEL PEAK 20(11P15.1) MUTATED DEL PEAK 20(11P15.1) WILD-TYPE
  CLUS_1                           47                            180
  CLUS_2                           23                             88
  CLUS_3                            2                            173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(11P15.1) MUTATED       42     20      1      9
  DEL PEAK 20(11P15.1) WILD-TYPE    167    114    156      4
D40V4, multiclass
        clus
vv       DEL PEAK 20(11P15.1) MUTATED DEL PEAK 20(11P15.1) WILD-TYPE
  CLUS_1                           42                            167
  CLUS_2                           20                            114
  CLUS_3                            1                            156
  CLUS_4                            9                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(11P15.1) MUTATED       16     21      7     13
  DEL PEAK 20(11P15.1) WILD-TYPE     75     74    118    102
D40V5, multiclass
        clus
vv       DEL PEAK 20(11P15.1) MUTATED DEL PEAK 20(11P15.1) WILD-TYPE
  CLUS_1                           16                             75
  CLUS_2                           21                             74
  CLUS_3                            7                            118
  CLUS_4                           13                            102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11P15.1) MUTATED       11     18     28
  DEL PEAK 20(11P15.1) WILD-TYPE     72    140    157
D40V6, multiclass
        clus
vv       DEL PEAK 20(11P15.1) MUTATED DEL PEAK 20(11P15.1) WILD-TYPE
  CLUS_1                           11                             72
  CLUS_2                           18                            140
  CLUS_3                           28                            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(11P15.1) MUTATED       16     35      1     13      7
  DEL PEAK 20(11P15.1) WILD-TYPE    114     80    104    120     23
D40V7, multiclass
        clus
vv       DEL PEAK 20(11P15.1) MUTATED DEL PEAK 20(11P15.1) WILD-TYPE
  CLUS_1                           16                            114
  CLUS_2                           35                             80
  CLUS_3                            1                            104
  CLUS_4                           13                            120
  CLUS_5                            7                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(11P15.1) MUTATED       20      9      0      6      1     29
  DEL PEAK 20(11P15.1) WILD-TYPE    115     62     36     62     89     12
                                vv
clus                             CLUS_7
  DEL PEAK 20(11P15.1) MUTATED        7
  DEL PEAK 20(11P15.1) WILD-TYPE     65
D40V8, multiclass
        clus
vv       DEL PEAK 20(11P15.1) MUTATED DEL PEAK 20(11P15.1) WILD-TYPE
  CLUS_1                           20                            115
  CLUS_2                            9                             62
  CLUS_3                            0                             36
  CLUS_4                            6                             62
  CLUS_5                            1                             89
  CLUS_6                           29                             12
  CLUS_7                            7                             65
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(11P15.1) MUTATED       16     32      5     19
  DEL PEAK 20(11P15.1) WILD-TYPE    124     75     77    161
D40V9, multiclass
        clus
vv       DEL PEAK 20(11P15.1) MUTATED DEL PEAK 20(11P15.1) WILD-TYPE
  CLUS_1                           16                            124
  CLUS_2                           32                             75
  CLUS_3                            5                             77
  CLUS_4                           19                            161
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11P15.1) MUTATED       27     16     29
  DEL PEAK 20(11P15.1) WILD-TYPE    195    168     74
D40V10, multiclass
        clus
vv       DEL PEAK 20(11P15.1) MUTATED DEL PEAK 20(11P15.1) WILD-TYPE
  CLUS_1                           27                            195
  CLUS_2                           16                            168
  CLUS_3                           29                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(11P15.1) MUTATED       22     27      6     16
  DEL PEAK 20(11P15.1) WILD-TYPE    105     92     99    138
D40V11, multiclass
        clus
vv       DEL PEAK 20(11P15.1) MUTATED DEL PEAK 20(11P15.1) WILD-TYPE
  CLUS_1                           22                            105
  CLUS_2                           27                             92
  CLUS_3                            6                             99
  CLUS_4                           16                            138
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(11P15.1) MUTATED       13     29     11      0      9      9
  DEL PEAK 20(11P15.1) WILD-TYPE     86     48    107     56     54     83
D40V12, multiclass
        clus
vv       DEL PEAK 20(11P15.1) MUTATED DEL PEAK 20(11P15.1) WILD-TYPE
  CLUS_1                           13                             86
  CLUS_2                           29                             48
  CLUS_3                           11                            107
  CLUS_4                            0                             56
  CLUS_5                            9                             54
  CLUS_6                            9                             83
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 21(12P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(12P13.1) MUTATED        2      0      0
  DEL PEAK 21(12P13.1) WILD-TYPE      7     10      8
D41V1, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 21(12P13.1) MUTATED"
clus
  DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE 
                             2                             25 
                    TCGA-CS-4942                     TCGA-CS-4944 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-CS-5390                     TCGA-CS-5394 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-CS-5395                     TCGA-CS-5396 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DB-5270                     TCGA-DB-5273 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DB-5274                     TCGA-DB-5275 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DB-5276                     TCGA-DB-5277 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DB-5278                     TCGA-DB-5280 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DB-5281                     TCGA-DH-5140 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DH-5141                     TCGA-DH-5142 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DH-5143                     TCGA-DH-5144 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-E1-5303                     TCGA-E1-5304 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-E1-5311                     TCGA-E1-5318 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-E1-5322 
"DEL PEAK 21(12P13.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(12P13.1) MUTATED        1      1      0      0
  DEL PEAK 21(12P13.1) WILD-TYPE      6      6      7      6
D41V2, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 21(12P13.1) MUTATED"
clus
  DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE 
                             2                             25 
                    TCGA-CS-4942                     TCGA-CS-4944 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-CS-5390                     TCGA-CS-5394 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-CS-5395                     TCGA-CS-5396 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DB-5270                     TCGA-DB-5273 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DB-5274                     TCGA-DB-5275 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DB-5276                     TCGA-DB-5277 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DB-5278                     TCGA-DB-5280 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DB-5281                     TCGA-DH-5140 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DH-5141                     TCGA-DH-5142 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DH-5143                     TCGA-DH-5144 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-E1-5303                     TCGA-E1-5304 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-E1-5311                     TCGA-E1-5318 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-E1-5322 
"DEL PEAK 21(12P13.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(12P13.1) MUTATED       23     10      5
  DEL PEAK 21(12P13.1) WILD-TYPE    204    101    170
D41V3, multiclass
        clus
vv       DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE
  CLUS_1                           23                            204
  CLUS_2                           10                            101
  CLUS_3                            5                            170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(12P13.1) MUTATED       21      6      5      6
  DEL PEAK 21(12P13.1) WILD-TYPE    188    128    152      7
D41V4, multiclass
        clus
vv       DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE
  CLUS_1                           21                            188
  CLUS_2                            6                            128
  CLUS_3                            5                            152
  CLUS_4                            6                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(12P13.1) MUTATED        5     11      9      5
  DEL PEAK 21(12P13.1) WILD-TYPE     86     84    116    110
D41V5, multiclass
        clus
vv       DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE
  CLUS_1                            5                             86
  CLUS_2                           11                             84
  CLUS_3                            9                            116
  CLUS_4                            5                            110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(12P13.1) MUTATED        5      9     16
  DEL PEAK 21(12P13.1) WILD-TYPE     78    149    169
D41V6, multiclass
        clus
vv       DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE
  CLUS_1                            5                             78
  CLUS_2                            9                            149
  CLUS_3                           16                            169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(12P13.1) MUTATED       15     13      1      9      0
  DEL PEAK 21(12P13.1) WILD-TYPE    115    102    104    124     30
D41V7, multiclass
        clus
vv       DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE
  CLUS_1                           15                            115
  CLUS_2                           13                            102
  CLUS_3                            1                            104
  CLUS_4                            9                            124
  CLUS_5                            0                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(12P13.1) MUTATED       15      4      1      3      3      9
  DEL PEAK 21(12P13.1) WILD-TYPE    120     67     35     65     87     32
                                vv
clus                             CLUS_7
  DEL PEAK 21(12P13.1) MUTATED        3
  DEL PEAK 21(12P13.1) WILD-TYPE     69
D41V8, multiclass
        clus
vv       DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE
  CLUS_1                           15                            120
  CLUS_2                            4                             67
  CLUS_3                            1                             35
  CLUS_4                            3                             65
  CLUS_5                            3                             87
  CLUS_6                            9                             32
  CLUS_7                            3                             69
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(12P13.1) MUTATED        7     16      5     10
  DEL PEAK 21(12P13.1) WILD-TYPE    133     91     77    170
D41V9, multiclass
        clus
vv       DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE
  CLUS_1                            7                            133
  CLUS_2                           16                             91
  CLUS_3                            5                             77
  CLUS_4                           10                            170
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(12P13.1) MUTATED       13     11     14
  DEL PEAK 21(12P13.1) WILD-TYPE    209    173     89
D41V10, multiclass
        clus
vv       DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE
  CLUS_1                           13                            209
  CLUS_2                           11                            173
  CLUS_3                           14                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(12P13.1) MUTATED       13     13      5      7
  DEL PEAK 21(12P13.1) WILD-TYPE    114    106    100    147
D41V11, multiclass
        clus
vv       DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE
  CLUS_1                           13                            114
  CLUS_2                           13                            106
  CLUS_3                            5                            100
  CLUS_4                            7                            147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(12P13.1) MUTATED       11     10      6      1      3      7
  DEL PEAK 21(12P13.1) WILD-TYPE     88     67    112     55     60     85
D41V12, multiclass
        clus
vv       DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE
  CLUS_1                           11                             88
  CLUS_2                           10                             67
  CLUS_3                            6                            112
  CLUS_4                            1                             55
  CLUS_5                            3                             60
  CLUS_6                            7                             85
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 22(12Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12Q12) MUTATED        1      2      1
  DEL PEAK 22(12Q12) WILD-TYPE      8      8      7
D42V1, multiclass
        clus
vv       DEL PEAK 22(12Q12) MUTATED DEL PEAK 22(12Q12) WILD-TYPE
  CLUS_1                          1                            8
  CLUS_2                          2                            8
  CLUS_3                          1                            7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(12Q12) MUTATED        1      3      0      0
  DEL PEAK 22(12Q12) WILD-TYPE      6      4      7      6
D42V2, multiclass
        clus
vv       DEL PEAK 22(12Q12) MUTATED DEL PEAK 22(12Q12) WILD-TYPE
  CLUS_1                          1                            6
  CLUS_2                          3                            4
  CLUS_3                          0                            7
  CLUS_4                          0                            6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12Q12) MUTATED       50     12     10
  DEL PEAK 22(12Q12) WILD-TYPE    177     99    165
D42V3, multiclass
        clus
vv       DEL PEAK 22(12Q12) MUTATED DEL PEAK 22(12Q12) WILD-TYPE
  CLUS_1                         50                          177
  CLUS_2                         12                           99
  CLUS_3                         10                          165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(12Q12) MUTATED       45     12      8      7
  DEL PEAK 22(12Q12) WILD-TYPE    164    122    149      6
D42V4, multiclass
        clus
vv       DEL PEAK 22(12Q12) MUTATED DEL PEAK 22(12Q12) WILD-TYPE
  CLUS_1                         45                          164
  CLUS_2                         12                          122
  CLUS_3                          8                          149
  CLUS_4                          7                            6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(12Q12) MUTATED        8     16     18     16
  DEL PEAK 22(12Q12) WILD-TYPE     83     79    107     99
D42V5, multiclass
        clus
vv       DEL PEAK 22(12Q12) MUTATED DEL PEAK 22(12Q12) WILD-TYPE
  CLUS_1                          8                           83
  CLUS_2                         16                           79
  CLUS_3                         18                          107
  CLUS_4                         16                           99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12Q12) MUTATED       11     21     26
  DEL PEAK 22(12Q12) WILD-TYPE     72    137    159
D42V6, multiclass
        clus
vv       DEL PEAK 22(12Q12) MUTATED DEL PEAK 22(12Q12) WILD-TYPE
  CLUS_1                         11                           72
  CLUS_2                         21                          137
  CLUS_3                         26                          159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(12Q12) MUTATED       23     22      4     18      5
  DEL PEAK 22(12Q12) WILD-TYPE    107     93    101    115     25
D42V7, multiclass
        clus
vv       DEL PEAK 22(12Q12) MUTATED DEL PEAK 22(12Q12) WILD-TYPE
  CLUS_1                         23                          107
  CLUS_2                         22                           93
  CLUS_3                          4                          101
  CLUS_4                         18                          115
  CLUS_5                          5                           25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 22(12Q12) MUTATED       25      4      3     11      4     18      7
  DEL PEAK 22(12Q12) WILD-TYPE    110     67     33     57     86     23     65
D42V8, multiclass
        clus
vv       DEL PEAK 22(12Q12) MUTATED DEL PEAK 22(12Q12) WILD-TYPE
  CLUS_1                         25                          110
  CLUS_2                          4                           67
  CLUS_3                          3                           33
  CLUS_4                         11                           57
  CLUS_5                          4                           86
  CLUS_6                         18                           23
  CLUS_7                          7                           65
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(12Q12) MUTATED       14     27      9     22
  DEL PEAK 22(12Q12) WILD-TYPE    126     80     73    158
D42V9, multiclass
        clus
vv       DEL PEAK 22(12Q12) MUTATED DEL PEAK 22(12Q12) WILD-TYPE
  CLUS_1                         14                          126
  CLUS_2                         27                           80
  CLUS_3                          9                           73
  CLUS_4                         22                          158
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12Q12) MUTATED       31     23     18
  DEL PEAK 22(12Q12) WILD-TYPE    191    161     85
D42V10, multiclass
        clus
vv       DEL PEAK 22(12Q12) MUTATED DEL PEAK 22(12Q12) WILD-TYPE
  CLUS_1                         31                          191
  CLUS_2                         23                          161
  CLUS_3                         18                           85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(12Q12) MUTATED       18     22     11     21
  DEL PEAK 22(12Q12) WILD-TYPE    109     97     94    133
D42V11, multiclass
        clus
vv       DEL PEAK 22(12Q12) MUTATED DEL PEAK 22(12Q12) WILD-TYPE
  CLUS_1                         18                          109
  CLUS_2                         22                           97
  CLUS_3                         11                           94
  CLUS_4                         21                          133
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(12Q12) MUTATED       16     22     13      4      2     15
  DEL PEAK 22(12Q12) WILD-TYPE     83     55    105     52     61     77
D42V12, multiclass
        clus
vv       DEL PEAK 22(12Q12) MUTATED DEL PEAK 22(12Q12) WILD-TYPE
  CLUS_1                         16                           83
  CLUS_2                         22                           55
  CLUS_3                         13                          105
  CLUS_4                          4                           52
  CLUS_5                          2                           61
  CLUS_6                         15                           77
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 23(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q14.2) MUTATED        5      3      1
  DEL PEAK 23(13Q14.2) WILD-TYPE      4      7      7
D43V1, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                            5                              4
  CLUS_2                            3                              7
  CLUS_3                            1                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(13Q14.2) MUTATED        2      7      0      0
  DEL PEAK 23(13Q14.2) WILD-TYPE      5      0      7      6
D43V2, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                            2                              5
  CLUS_2                            7                              0
  CLUS_3                            0                              7
  CLUS_4                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q14.2) MUTATED       59     57     28
  DEL PEAK 23(13Q14.2) WILD-TYPE    168     54    147
D43V3, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                           59                            168
  CLUS_2                           57                             54
  CLUS_3                           28                            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(13Q14.2) MUTATED       70     39     27      8
  DEL PEAK 23(13Q14.2) WILD-TYPE    139     95    130      5
D43V4, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                           70                            139
  CLUS_2                           39                             95
  CLUS_3                           27                            130
  CLUS_4                            8                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(13Q14.2) MUTATED       20     38     30     32
  DEL PEAK 23(13Q14.2) WILD-TYPE     71     57     95     83
D43V5, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                           20                             71
  CLUS_2                           38                             57
  CLUS_3                           30                             95
  CLUS_4                           32                             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q14.2) MUTATED       21     47     52
  DEL PEAK 23(13Q14.2) WILD-TYPE     62    111    133
D43V6, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                           21                             62
  CLUS_2                           47                            111
  CLUS_3                           52                            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(13Q14.2) MUTATED       39     49     16     32      8
  DEL PEAK 23(13Q14.2) WILD-TYPE     91     66     89    101     22
D43V7, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                           39                             91
  CLUS_2                           49                             66
  CLUS_3                           16                             89
  CLUS_4                           32                            101
  CLUS_5                            8                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(13Q14.2) MUTATED       44     22      2     17     18     25
  DEL PEAK 23(13Q14.2) WILD-TYPE     91     49     34     51     72     16
                                vv
clus                             CLUS_7
  DEL PEAK 23(13Q14.2) MUTATED       16
  DEL PEAK 23(13Q14.2) WILD-TYPE     56
D43V8, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                           44                             91
  CLUS_2                           22                             49
  CLUS_3                            2                             34
  CLUS_4                           17                             51
  CLUS_5                           18                             72
  CLUS_6                           25                             16
  CLUS_7                           16                             56
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(13Q14.2) MUTATED       40     41     22     40
  DEL PEAK 23(13Q14.2) WILD-TYPE    100     66     60    140
D43V9, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                           40                            100
  CLUS_2                           41                             66
  CLUS_3                           22                             60
  CLUS_4                           40                            140
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q14.2) MUTATED       67     37     39
  DEL PEAK 23(13Q14.2) WILD-TYPE    155    147     64
D43V10, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                           67                            155
  CLUS_2                           37                            147
  CLUS_3                           39                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(13Q14.2) MUTATED       37     42     26     38
  DEL PEAK 23(13Q14.2) WILD-TYPE     90     77     79    116
D43V11, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                           37                             90
  CLUS_2                           42                             77
  CLUS_3                           26                             79
  CLUS_4                           38                            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(13Q14.2) MUTATED       24     31     25     10     21     32
  DEL PEAK 23(13Q14.2) WILD-TYPE     75     46     93     46     42     60
D43V12, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                           24                             75
  CLUS_2                           31                             46
  CLUS_3                           25                             93
  CLUS_4                           10                             46
  CLUS_5                           21                             42
  CLUS_6                           32                             60
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 24(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(13Q34) MUTATED        2      2      0
  DEL PEAK 24(13Q34) WILD-TYPE      7      8      8
D44V1, multiclass
        clus
vv       DEL PEAK 24(13Q34) MUTATED DEL PEAK 24(13Q34) WILD-TYPE
  CLUS_1                          2                            7
  CLUS_2                          2                            8
  CLUS_3                          0                            8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(13Q34) MUTATED        1      3      0      0
  DEL PEAK 24(13Q34) WILD-TYPE      6      4      7      6
D44V2, multiclass
        clus
vv       DEL PEAK 24(13Q34) MUTATED DEL PEAK 24(13Q34) WILD-TYPE
  CLUS_1                          1                            6
  CLUS_2                          3                            4
  CLUS_3                          0                            7
  CLUS_4                          0                            6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(13Q34) MUTATED       34     50     26
  DEL PEAK 24(13Q34) WILD-TYPE    193     61    149
D44V3, multiclass
        clus
vv       DEL PEAK 24(13Q34) MUTATED DEL PEAK 24(13Q34) WILD-TYPE
  CLUS_1                         34                          193
  CLUS_2                         50                           61
  CLUS_3                         26                          149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(13Q34) MUTATED       44     35     25      6
  DEL PEAK 24(13Q34) WILD-TYPE    165     99    132      7
D44V4, multiclass
        clus
vv       DEL PEAK 24(13Q34) MUTATED DEL PEAK 24(13Q34) WILD-TYPE
  CLUS_1                         44                          165
  CLUS_2                         35                           99
  CLUS_3                         25                          132
  CLUS_4                          6                            7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(13Q34) MUTATED       14     30     20     25
  DEL PEAK 24(13Q34) WILD-TYPE     77     65    105     90
D44V5, multiclass
        clus
vv       DEL PEAK 24(13Q34) MUTATED DEL PEAK 24(13Q34) WILD-TYPE
  CLUS_1                         14                           77
  CLUS_2                         30                           65
  CLUS_3                         20                          105
  CLUS_4                         25                           90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(13Q34) MUTATED       13     37     39
  DEL PEAK 24(13Q34) WILD-TYPE     70    121    146
D44V6, multiclass
        clus
vv       DEL PEAK 24(13Q34) MUTATED DEL PEAK 24(13Q34) WILD-TYPE
  CLUS_1                         13                           70
  CLUS_2                         37                          121
  CLUS_3                         39                          146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(13Q34) MUTATED       28     38     16     23      5
  DEL PEAK 24(13Q34) WILD-TYPE    102     77     89    110     25
D44V7, multiclass
        clus
vv       DEL PEAK 24(13Q34) MUTATED DEL PEAK 24(13Q34) WILD-TYPE
  CLUS_1                         28                          102
  CLUS_2                         38                           77
  CLUS_3                         16                           89
  CLUS_4                         23                          110
  CLUS_5                          5                           25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 24(13Q34) MUTATED       31     20      2      9     17     18     13
  DEL PEAK 24(13Q34) WILD-TYPE    104     51     34     59     73     23     59
D44V8, multiclass
        clus
vv       DEL PEAK 24(13Q34) MUTATED DEL PEAK 24(13Q34) WILD-TYPE
  CLUS_1                         31                          104
  CLUS_2                         20                           51
  CLUS_3                          2                           34
  CLUS_4                          9                           59
  CLUS_5                         17                           73
  CLUS_6                         18                           23
  CLUS_7                         13                           59
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(13Q34) MUTATED       28     33     18     30
  DEL PEAK 24(13Q34) WILD-TYPE    112     74     64    150
D44V9, multiclass
        clus
vv       DEL PEAK 24(13Q34) MUTATED DEL PEAK 24(13Q34) WILD-TYPE
  CLUS_1                         28                          112
  CLUS_2                         33                           74
  CLUS_3                         18                           64
  CLUS_4                         30                          150
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(13Q34) MUTATED       49     27     33
  DEL PEAK 24(13Q34) WILD-TYPE    173    157     70
D44V10, multiclass
        clus
vv       DEL PEAK 24(13Q34) MUTATED DEL PEAK 24(13Q34) WILD-TYPE
  CLUS_1                         49                          173
  CLUS_2                         27                          157
  CLUS_3                         33                           70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(13Q34) MUTATED       29     29     22     29
  DEL PEAK 24(13Q34) WILD-TYPE     98     90     83    125
D44V11, multiclass
        clus
vv       DEL PEAK 24(13Q34) MUTATED DEL PEAK 24(13Q34) WILD-TYPE
  CLUS_1                         29                           98
  CLUS_2                         29                           90
  CLUS_3                         22                           83
  CLUS_4                         29                          125
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(13Q34) MUTATED       15     20     19      9     19     27
  DEL PEAK 24(13Q34) WILD-TYPE     84     57     99     47     44     65
D44V12, multiclass
        clus
vv       DEL PEAK 24(13Q34) MUTATED DEL PEAK 24(13Q34) WILD-TYPE
  CLUS_1                         15                           84
  CLUS_2                         20                           57
  CLUS_3                         19                           99
  CLUS_4                          9                           47
  CLUS_5                         19                           44
  CLUS_6                         27                           65
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 25(14Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(14Q24.3) MUTATED        4      2      1
  DEL PEAK 25(14Q24.3) WILD-TYPE      5      8      7
D45V1, multiclass
        clus
vv       DEL PEAK 25(14Q24.3) MUTATED DEL PEAK 25(14Q24.3) WILD-TYPE
  CLUS_1                            4                              5
  CLUS_2                            2                              8
  CLUS_3                            1                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(14Q24.3) MUTATED        2      4      0      1
  DEL PEAK 25(14Q24.3) WILD-TYPE      5      3      7      5
D45V2, multiclass
        clus
vv       DEL PEAK 25(14Q24.3) MUTATED DEL PEAK 25(14Q24.3) WILD-TYPE
  CLUS_1                            2                              5
  CLUS_2                            4                              3
  CLUS_3                            0                              7
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(14Q24.3) MUTATED       36     53     33
  DEL PEAK 25(14Q24.3) WILD-TYPE    191     58    142
D45V3, multiclass
        clus
vv       DEL PEAK 25(14Q24.3) MUTATED DEL PEAK 25(14Q24.3) WILD-TYPE
  CLUS_1                           36                            191
  CLUS_2                           53                             58
  CLUS_3                           33                            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(14Q24.3) MUTATED       46     39     31      6
  DEL PEAK 25(14Q24.3) WILD-TYPE    163     95    126      7
D45V4, multiclass
        clus
vv       DEL PEAK 25(14Q24.3) MUTATED DEL PEAK 25(14Q24.3) WILD-TYPE
  CLUS_1                           46                            163
  CLUS_2                           39                             95
  CLUS_3                           31                            126
  CLUS_4                            6                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(14Q24.3) MUTATED       11     36     31     26
  DEL PEAK 25(14Q24.3) WILD-TYPE     80     59     94     89
D45V5, multiclass
        clus
vv       DEL PEAK 25(14Q24.3) MUTATED DEL PEAK 25(14Q24.3) WILD-TYPE
  CLUS_1                           11                             80
  CLUS_2                           36                             59
  CLUS_3                           31                             94
  CLUS_4                           26                             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(14Q24.3) MUTATED       14     33     57
  DEL PEAK 25(14Q24.3) WILD-TYPE     69    125    128
D45V6, multiclass
        clus
vv       DEL PEAK 25(14Q24.3) MUTATED DEL PEAK 25(14Q24.3) WILD-TYPE
  CLUS_1                           14                             69
  CLUS_2                           33                            125
  CLUS_3                           57                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(14Q24.3) MUTATED       24     45     23     22      8
  DEL PEAK 25(14Q24.3) WILD-TYPE    106     70     82    111     22
D45V7, multiclass
        clus
vv       DEL PEAK 25(14Q24.3) MUTATED DEL PEAK 25(14Q24.3) WILD-TYPE
  CLUS_1                           24                            106
  CLUS_2                           45                             70
  CLUS_3                           23                             82
  CLUS_4                           22                            111
  CLUS_5                            8                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(14Q24.3) MUTATED       33     27      8     12     17     17
  DEL PEAK 25(14Q24.3) WILD-TYPE    102     44     28     56     73     24
                                vv
clus                             CLUS_7
  DEL PEAK 25(14Q24.3) MUTATED        8
  DEL PEAK 25(14Q24.3) WILD-TYPE     64
D45V8, multiclass
        clus
vv       DEL PEAK 25(14Q24.3) MUTATED DEL PEAK 25(14Q24.3) WILD-TYPE
  CLUS_1                           33                            102
  CLUS_2                           27                             44
  CLUS_3                            8                             28
  CLUS_4                           12                             56
  CLUS_5                           17                             73
  CLUS_6                           17                             24
  CLUS_7                            8                             64
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(14Q24.3) MUTATED       52     20     17     32
  DEL PEAK 25(14Q24.3) WILD-TYPE     88     87     65    148
D45V9, multiclass
        clus
vv       DEL PEAK 25(14Q24.3) MUTATED DEL PEAK 25(14Q24.3) WILD-TYPE
  CLUS_1                           52                             88
  CLUS_2                           20                             87
  CLUS_3                           17                             65
  CLUS_4                           32                            148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(14Q24.3) MUTATED       55     31     35
  DEL PEAK 25(14Q24.3) WILD-TYPE    167    153     68
D45V10, multiclass
        clus
vv       DEL PEAK 25(14Q24.3) MUTATED DEL PEAK 25(14Q24.3) WILD-TYPE
  CLUS_1                           55                            167
  CLUS_2                           31                            153
  CLUS_3                           35                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(14Q24.3) MUTATED       37     37     24     23
  DEL PEAK 25(14Q24.3) WILD-TYPE     90     82     81    131
D45V11, multiclass
        clus
vv       DEL PEAK 25(14Q24.3) MUTATED DEL PEAK 25(14Q24.3) WILD-TYPE
  CLUS_1                           37                             90
  CLUS_2                           37                             82
  CLUS_3                           24                             81
  CLUS_4                           23                            131
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(14Q24.3) MUTATED       27     25     18     13     24     14
  DEL PEAK 25(14Q24.3) WILD-TYPE     72     52    100     43     39     78
D45V12, multiclass
        clus
vv       DEL PEAK 25(14Q24.3) MUTATED DEL PEAK 25(14Q24.3) WILD-TYPE
  CLUS_1                           27                             72
  CLUS_2                           25                             52
  CLUS_3                           18                            100
  CLUS_4                           13                             43
  CLUS_5                           24                             39
  CLUS_6                           14                             78
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 26(18Q23) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(18Q23) MUTATED        2      3      0
  DEL PEAK 26(18Q23) WILD-TYPE      7      7      8
D46V1, multiclass
        clus
vv       DEL PEAK 26(18Q23) MUTATED DEL PEAK 26(18Q23) WILD-TYPE
  CLUS_1                          2                            7
  CLUS_2                          3                            7
  CLUS_3                          0                            8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(18Q23) MUTATED        1      3      1      0
  DEL PEAK 26(18Q23) WILD-TYPE      6      4      6      6
D46V2, multiclass
        clus
vv       DEL PEAK 26(18Q23) MUTATED DEL PEAK 26(18Q23) WILD-TYPE
  CLUS_1                          1                            6
  CLUS_2                          3                            4
  CLUS_3                          1                            6
  CLUS_4                          0                            6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(18Q23) MUTATED       27     17     34
  DEL PEAK 26(18Q23) WILD-TYPE    200     94    141
D46V3, multiclass
        clus
vv       DEL PEAK 26(18Q23) MUTATED DEL PEAK 26(18Q23) WILD-TYPE
  CLUS_1                         27                          200
  CLUS_2                         17                           94
  CLUS_3                         34                          141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(18Q23) MUTATED       28     15     34      1
  DEL PEAK 26(18Q23) WILD-TYPE    181    119    123     12
D46V4, multiclass
        clus
vv       DEL PEAK 26(18Q23) MUTATED DEL PEAK 26(18Q23) WILD-TYPE
  CLUS_1                         28                          181
  CLUS_2                         15                          119
  CLUS_3                         34                          123
  CLUS_4                          1                           12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(18Q23) MUTATED       13     15     18     16
  DEL PEAK 26(18Q23) WILD-TYPE     78     80    107     99
D46V5, multiclass
        clus
vv       DEL PEAK 26(18Q23) MUTATED DEL PEAK 26(18Q23) WILD-TYPE
  CLUS_1                         13                           78
  CLUS_2                         15                           80
  CLUS_3                         18                          107
  CLUS_4                         16                           99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(18Q23) MUTATED        9     20     33
  DEL PEAK 26(18Q23) WILD-TYPE     74    138    152
D46V6, multiclass
        clus
vv       DEL PEAK 26(18Q23) MUTATED DEL PEAK 26(18Q23) WILD-TYPE
  CLUS_1                          9                           74
  CLUS_2                         20                          138
  CLUS_3                         33                          152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(18Q23) MUTATED       19     17     22     17      3
  DEL PEAK 26(18Q23) WILD-TYPE    111     98     83    116     27
D46V7, multiclass
        clus
vv       DEL PEAK 26(18Q23) MUTATED DEL PEAK 26(18Q23) WILD-TYPE
  CLUS_1                         19                          111
  CLUS_2                         17                           98
  CLUS_3                         22                           83
  CLUS_4                         17                          116
  CLUS_5                          3                           27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 26(18Q23) MUTATED       19     10      8      6     20      7      8
  DEL PEAK 26(18Q23) WILD-TYPE    116     61     28     62     70     34     64
D46V8, multiclass
        clus
vv       DEL PEAK 26(18Q23) MUTATED DEL PEAK 26(18Q23) WILD-TYPE
  CLUS_1                         19                          116
  CLUS_2                         10                           61
  CLUS_3                          8                           28
  CLUS_4                          6                           62
  CLUS_5                         20                           70
  CLUS_6                          7                           34
  CLUS_7                          8                           64
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(18Q23) MUTATED       23     14     19     22
  DEL PEAK 26(18Q23) WILD-TYPE    117     93     63    158
D46V9, multiclass
        clus
vv       DEL PEAK 26(18Q23) MUTATED DEL PEAK 26(18Q23) WILD-TYPE
  CLUS_1                         23                          117
  CLUS_2                         14                           93
  CLUS_3                         19                           63
  CLUS_4                         22                          158
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(18Q23) MUTATED       38     25     15
  DEL PEAK 26(18Q23) WILD-TYPE    184    159     88
D46V10, multiclass
        clus
vv       DEL PEAK 26(18Q23) MUTATED DEL PEAK 26(18Q23) WILD-TYPE
  CLUS_1                         38                          184
  CLUS_2                         25                          159
  CLUS_3                         15                           88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(18Q23) MUTATED       21     14     20     22
  DEL PEAK 26(18Q23) WILD-TYPE    106    105     85    132
D46V11, multiclass
        clus
vv       DEL PEAK 26(18Q23) MUTATED DEL PEAK 26(18Q23) WILD-TYPE
  CLUS_1                         21                          106
  CLUS_2                         14                          105
  CLUS_3                         20                           85
  CLUS_4                         22                          132
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(18Q23) MUTATED       15     11     15     12      9     15
  DEL PEAK 26(18Q23) WILD-TYPE     84     66    103     44     54     77
D46V12, multiclass
        clus
vv       DEL PEAK 26(18Q23) MUTATED DEL PEAK 26(18Q23) WILD-TYPE
  CLUS_1                         15                           84
  CLUS_2                         11                           66
  CLUS_3                         15                          103
  CLUS_4                         12                           44
  CLUS_5                          9                           54
  CLUS_6                         15                           77
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 27(19Q13.42) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(19Q13.42) MUTATED        7     10      4
  DEL PEAK 27(19Q13.42) WILD-TYPE      2      0      4
D47V1, multiclass
        clus
vv       DEL PEAK 27(19Q13.42) MUTATED DEL PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                             7                               2
  CLUS_2                            10                               0
  CLUS_3                             4                               4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(19Q13.42) MUTATED        4      7      7      3
  DEL PEAK 27(19Q13.42) WILD-TYPE      3      0      0      3
D47V2, multiclass
        clus
vv       DEL PEAK 27(19Q13.42) MUTATED DEL PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                             4                               3
  CLUS_2                             7                               0
  CLUS_3                             7                               0
  CLUS_4                             3                               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(19Q13.42) MUTATED       63     44    171
  DEL PEAK 27(19Q13.42) WILD-TYPE    164     67      4
D47V3, multiclass
        clus
vv       DEL PEAK 27(19Q13.42) MUTATED DEL PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            63                             164
  CLUS_2                            44                              67
  CLUS_3                           171                               4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(19Q13.42) MUTATED       78     35    157      8
  DEL PEAK 27(19Q13.42) WILD-TYPE    131     99      0      5
D47V4, multiclass
        clus
vv       DEL PEAK 27(19Q13.42) MUTATED DEL PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            78                             131
  CLUS_2                            35                              99
  CLUS_3                           157                               0
  CLUS_4                             8                               5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(19Q13.42) MUTATED       36     56     72     72
  DEL PEAK 27(19Q13.42) WILD-TYPE     55     39     53     43
D47V5, multiclass
        clus
vv       DEL PEAK 27(19Q13.42) MUTATED DEL PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            36                              55
  CLUS_2                            56                              39
  CLUS_3                            72                              53
  CLUS_4                            72                              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(19Q13.42) MUTATED       36     98    102
  DEL PEAK 27(19Q13.42) WILD-TYPE     47     60     83
D47V6, multiclass
        clus
vv       DEL PEAK 27(19Q13.42) MUTATED DEL PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            36                              47
  CLUS_2                            98                              60
  CLUS_3                           102                              83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(19Q13.42) MUTATED       46     37    105     77     13
  DEL PEAK 27(19Q13.42) WILD-TYPE     84     78      0     56     17
D47V7, multiclass
        clus
vv       DEL PEAK 27(19Q13.42) MUTATED DEL PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            46                              84
  CLUS_2                            37                              78
  CLUS_3                           105                               0
  CLUS_4                            77                              56
  CLUS_5                            13                              17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(19Q13.42) MUTATED       46      9     36     21     89     23
  DEL PEAK 27(19Q13.42) WILD-TYPE     89     62      0     47      1     18
                                 vv
clus                              CLUS_7
  DEL PEAK 27(19Q13.42) MUTATED       54
  DEL PEAK 27(19Q13.42) WILD-TYPE     18
D47V8, multiclass
        clus
vv       DEL PEAK 27(19Q13.42) MUTATED DEL PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            46                              89
  CLUS_2                             9                              62
  CLUS_3                            36                               0
  CLUS_4                            21                              47
  CLUS_5                            89                               1
  CLUS_6                            23                              18
  CLUS_7                            54                              18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(19Q13.42) MUTATED       59     38     77    104
  DEL PEAK 27(19Q13.42) WILD-TYPE     81     69      5     76
D47V9, multiclass
        clus
vv       DEL PEAK 27(19Q13.42) MUTATED DEL PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            59                              81
  CLUS_2                            38                              69
  CLUS_3                            77                               5
  CLUS_4                           104                              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(19Q13.42) MUTATED      137    119     22
  DEL PEAK 27(19Q13.42) WILD-TYPE     85     65     81
D47V10, multiclass
        clus
vv       DEL PEAK 27(19Q13.42) MUTATED DEL PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                           137                              85
  CLUS_2                           119                              65
  CLUS_3                            22                              81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(19Q13.42) MUTATED       49     45     95     88
  DEL PEAK 27(19Q13.42) WILD-TYPE     78     74     10     66
D47V11, multiclass
        clus
vv       DEL PEAK 27(19Q13.42) MUTATED DEL PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            49                              78
  CLUS_2                            45                              74
  CLUS_3                            95                              10
  CLUS_4                            88                              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(19Q13.42) MUTATED       39     51     74     56      4     53
  DEL PEAK 27(19Q13.42) WILD-TYPE     60     26     44      0     59     39
D47V12, multiclass
        clus
vv       DEL PEAK 27(19Q13.42) MUTATED DEL PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            39                              60
  CLUS_2                            51                              26
  CLUS_3                            74                              44
  CLUS_4                            56                               0
  CLUS_5                             4                              59
  CLUS_6                            53                              39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 28(22Q13.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(22Q13.31) MUTATED        4      1      1
  DEL PEAK 28(22Q13.31) WILD-TYPE      5      9      7
D48V1, multiclass
        clus
vv       DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE
  CLUS_1                             4                               5
  CLUS_2                             1                               9
  CLUS_3                             1                               7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(22Q13.31) MUTATED        2      4      0      0
  DEL PEAK 28(22Q13.31) WILD-TYPE      5      3      7      6
D48V2, multiclass
        clus
vv       DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE
  CLUS_1                             2                               5
  CLUS_2                             4                               3
  CLUS_3                             0                               7
  CLUS_4                             0                               6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(22Q13.31) MUTATED       36     37      4
  DEL PEAK 28(22Q13.31) WILD-TYPE    191     74    171
D48V3, multiclass
        clus
vv       DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE
  CLUS_1                            36                             191
  CLUS_2                            37                              74
  CLUS_3                             4                             171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(22Q13.31) MUTATED       36     34      4      3
  DEL PEAK 28(22Q13.31) WILD-TYPE    173    100    153     10
D48V4, multiclass
        clus
vv       DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE
  CLUS_1                            36                             173
  CLUS_2                            34                             100
  CLUS_3                             4                             153
  CLUS_4                             3                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(22Q13.31) MUTATED       10     27     13     12
  DEL PEAK 28(22Q13.31) WILD-TYPE     81     68    112    103
D48V5, multiclass
        clus
vv       DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE
  CLUS_1                            10                              81
  CLUS_2                            27                              68
  CLUS_3                            13                             112
  CLUS_4                            12                             103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(22Q13.31) MUTATED       10     16     36
  DEL PEAK 28(22Q13.31) WILD-TYPE     73    142    149
D48V6, multiclass
        clus
vv       DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE
  CLUS_1                            10                              73
  CLUS_2                            16                             142
  CLUS_3                            36                             149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(22Q13.31) MUTATED       14     40      2     15      6
  DEL PEAK 28(22Q13.31) WILD-TYPE    116     75    103    118     24
D48V7, multiclass
        clus
vv       DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE
  CLUS_1                            14                             116
  CLUS_2                            40                              75
  CLUS_3                             2                             103
  CLUS_4                            15                             118
  CLUS_5                             6                              24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(22Q13.31) MUTATED       17     26      2     14      2     14
  DEL PEAK 28(22Q13.31) WILD-TYPE    118     45     34     54     88     27
                                 vv
clus                              CLUS_7
  DEL PEAK 28(22Q13.31) MUTATED        2
  DEL PEAK 28(22Q13.31) WILD-TYPE     70
D48V8, multiclass
        clus
vv       DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE
  CLUS_1                            17                             118
  CLUS_2                            26                              45
  CLUS_3                             2                              34
  CLUS_4                            14                              54
  CLUS_5                             2                              88
  CLUS_6                            14                              27
  CLUS_7                             2                              70
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(22Q13.31) MUTATED       26     22      7     22
  DEL PEAK 28(22Q13.31) WILD-TYPE    114     85     75    158
D48V9, multiclass
        clus
vv       DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE
  CLUS_1                            26                             114
  CLUS_2                            22                              85
  CLUS_3                             7                              75
  CLUS_4                            22                             158
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(22Q13.31) MUTATED       27     18     32
  DEL PEAK 28(22Q13.31) WILD-TYPE    195    166     71
D48V10, multiclass
        clus
vv       DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE
  CLUS_1                            27                             195
  CLUS_2                            18                             166
  CLUS_3                            32                              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(22Q13.31) MUTATED       23     32      6     15
  DEL PEAK 28(22Q13.31) WILD-TYPE    104     87     99    139
D48V11, multiclass
        clus
vv       DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE
  CLUS_1                            23                             104
  CLUS_2                            32                              87
  CLUS_3                             6                              99
  CLUS_4                            15                             139
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(22Q13.31) MUTATED       10     20     14      3     20      9
  DEL PEAK 28(22Q13.31) WILD-TYPE     89     57    104     53     43     83
D48V12, multiclass
        clus
vv       DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE
  CLUS_1                            10                              89
  CLUS_2                            20                              57
  CLUS_3                            14                             104
  CLUS_4                             3                              53
  CLUS_5                            20                              43
  CLUS_6                             9                              83
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 29(XQ21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(XQ21.1) MUTATED        1      2      2
  DEL PEAK 29(XQ21.1) WILD-TYPE      8      8      6
D49V1, multiclass
        clus
vv       DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           2                             8
  CLUS_3                           2                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(XQ21.1) MUTATED        1      3      0      1
  DEL PEAK 29(XQ21.1) WILD-TYPE      6      4      7      5
D49V2, multiclass
        clus
vv       DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE
  CLUS_1                           1                             6
  CLUS_2                           3                             4
  CLUS_3                           0                             7
  CLUS_4                           1                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(XQ21.1) MUTATED       23     23     32
  DEL PEAK 29(XQ21.1) WILD-TYPE    204     88    143
D49V3, multiclass
        clus
vv       DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE
  CLUS_1                          23                           204
  CLUS_2                          23                            88
  CLUS_3                          32                           143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(XQ21.1) MUTATED       30     10     30      8
  DEL PEAK 29(XQ21.1) WILD-TYPE    179    124    127      5
D49V4, multiclass
        clus
vv       DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE
  CLUS_1                          30                           179
  CLUS_2                          10                           124
  CLUS_3                          30                           127
  CLUS_4                           8                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(XQ21.1) MUTATED        6     26     20     14
  DEL PEAK 29(XQ21.1) WILD-TYPE     85     69    105    101
D49V5, multiclass
        clus
vv       DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE
  CLUS_1                           6                            85
  CLUS_2                          26                            69
  CLUS_3                          20                           105
  CLUS_4                          14                           101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(XQ21.1) MUTATED        6     22     38
  DEL PEAK 29(XQ21.1) WILD-TYPE     77    136    147
D49V6, multiclass
        clus
vv       DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE
  CLUS_1                           6                            77
  CLUS_2                          22                           136
  CLUS_3                          38                           147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(XQ21.1) MUTATED       14     24     23     16      1
  DEL PEAK 29(XQ21.1) WILD-TYPE    116     91     82    117     29
D49V7, multiclass
        clus
vv       DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE
  CLUS_1                          14                           116
  CLUS_2                          24                            91
  CLUS_3                          23                            82
  CLUS_4                          16                           117
  CLUS_5                           1                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(XQ21.1) MUTATED       13      8      9      8     20     16
  DEL PEAK 29(XQ21.1) WILD-TYPE    122     63     27     60     70     25
                               vv
clus                            CLUS_7
  DEL PEAK 29(XQ21.1) MUTATED        4
  DEL PEAK 29(XQ21.1) WILD-TYPE     68
D49V8, multiclass
        clus
vv       DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE
  CLUS_1                          13                           122
  CLUS_2                           8                            63
  CLUS_3                           9                            27
  CLUS_4                           8                            60
  CLUS_5                          20                            70
  CLUS_6                          16                            25
  CLUS_7                           4                            68
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(XQ21.1) MUTATED       14     18     25     21
  DEL PEAK 29(XQ21.1) WILD-TYPE    126     89     57    159
D49V9, multiclass
        clus
vv       DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE
  CLUS_1                          14                           126
  CLUS_2                          18                            89
  CLUS_3                          25                            57
  CLUS_4                          21                           159
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(XQ21.1) MUTATED       36     23     19
  DEL PEAK 29(XQ21.1) WILD-TYPE    186    161     84
D49V10, multiclass
        clus
vv       DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE
  CLUS_1                          36                           186
  CLUS_2                          23                           161
  CLUS_3                          19                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(XQ21.1) MUTATED       20     15     30     12
  DEL PEAK 29(XQ21.1) WILD-TYPE    107    104     75    142
D49V11, multiclass
        clus
vv       DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE
  CLUS_1                          20                           107
  CLUS_2                          15                           104
  CLUS_3                          30                            75
  CLUS_4                          12                           142
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(XQ21.1) MUTATED       12     18      6     13      6     22
  DEL PEAK 29(XQ21.1) WILD-TYPE     87     59    112     43     57     70
D49V12, multiclass
        clus
vv       DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE
  CLUS_1                          12                            87
  CLUS_2                          18                            59
  CLUS_3                           6                           112
  CLUS_4                          13                            43
  CLUS_5                           6                            57
  CLUS_6                          22                            70
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
