
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_TopgenesforCluster/broadinstitute.org/cancer.genome.analysis/00205/45/Topgenes_v1.R")
> result <- main("-s/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_TopgenesforCluster/broadinstitute.org/cancer.genome.analysis/00205/45/", "-m/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MethylationPreprocess/LIHC-TP/22315375/LIHC-TP.meth.by_max_stddev.data.txt", "-u10503", "-oLIHC-TP")
Cluster size 10503 broken into 5470 5033 
Cluster size 5470 broken into 3868 1602 
Cluster size 3868 broken into 1503 2365 
Cluster size 1503 broken into 594 909 
Done cluster 594 
Done cluster 909 
Done cluster 1503 
Cluster size 2365 broken into 1222 1143 
Done cluster 1222 
Done cluster 1143 
Done cluster 2365 
Done cluster 3868 
Cluster size 1602 broken into 793 809 
Done cluster 793 
Done cluster 809 
Done cluster 1602 
Done cluster 5470 
Cluster size 5033 broken into 2778 2255 
Cluster size 2778 broken into 809 1969 
Done cluster 809 
Cluster size 1969 broken into 1464 505 
Done cluster 1464 
Done cluster 505 
Done cluster 1969 
Done cluster 2778 
Cluster size 2255 broken into 1273 982 
Done cluster 1273 
Done cluster 982 
Done cluster 2255 
Done cluster 5033 
> q(save="no")
