Classifier directory BuiltClassifiers created under CHASM/BuiltClassifiers
/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_CHASM/broadinstitute.org/cancer.genome.analysis/10194/33/CHASM/snvGetTranscriptList
Generating set of 5000 Passenger Mutations
Passenger generation complete
Generating set of 5000 Null Mutations
Null generation complete
Retrieving features for training set from SNVBox
Data retrieval took 667.348300934s

Training set features stored in Train.arff
Retrieving features for null set from SNVBox
Data retrieval took 340.977579832s

Null set features stored in Null.arff
Training Random Forest Classifier
Trainset classification error is  12.73% of    9948 (kappa: 0.7442 )



Classisfier training time: 687.251713037

Classifier training complete
/xchip/cga/gdac-prod/tcga-gdac/jobResults/PREPROCESSCHASM/LIHC-TP/22623048/mutationslist.arff
Data retrieval took 1930.39045715s

Features retrieved for input mutations as .arff file
Output file generated
/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CHASM/LIHC-TP/22623075
/xchip/cga/gdac-prod/tcga-gdac/jobResults/PREPROCESSCHASM/LIHC-TP/22623048
