name	nmut	n_coding	n_flank	n_coding_nonsilent	fracflank	callscheme_name	cov_idx	N_tot	N_c	nsil_tot	nnon_tot	n_tot	rate_sil	rate_non	rate_tot	log_rate_tot	n_c	n_ind	N_ind	rate_c	rate_ind
TCGA-05-4244-01A-01D-1105-08	240	238	2	191	8.333333e-03	coding only	1	28835288	...	47	181	240	1.629947e-06	6.277031e-06	8.323135e-06	-5.079713e+00	...	10	28779098	...	3.474744e-07
TCGA-05-4249-01A-01D-1105-08	365	360	5	293	1.369863e-02	coding only	1	28835288	...	67	281	365	2.323542e-06	9.745004e-06	1.265810e-05	-4.897631e+00	...	12	28779098	...	4.169693e-07
TCGA-05-4250-01A-01D-1105-08	403	393	10	302	2.481390e-02	coding only	1	28835288	...	91	285	403	3.155855e-06	9.883723e-06	1.397593e-05	-4.854619e+00	...	17	28779098	...	5.907065e-07
TCGA-05-4382-01A-01D-1931-08	2134	2103	31	1665	1.452671e-02	coding only	1	28835288	...	438	1614	2134	1.518972e-05	5.597308e-05	7.400654e-05	-4.130730e+00	...	50	28779098	...	1.737372e-06
TCGA-05-4384-01A-01D-1753-08	167	162	5	124	2.994012e-02	coding only	1	28835288	...	38	119	167	1.317830e-06	4.126888e-06	5.791515e-06	-5.237208e+00	...	5	28779098	...	1.737372e-07
TCGA-05-4389-01A-01D-1265-08	318	315	3	235	9.433962e-03	coding only	1	28835288	...	80	225	318	2.774378e-06	7.802939e-06	1.102815e-05	-4.957497e+00	...	10	28779098	...	3.474744e-07
TCGA-05-4390-01A-02D-1753-08	651	645	6	508	9.216590e-03	coding only	1	28835288	...	137	477	650	4.751123e-06	1.654223e-05	2.254182e-05	-4.647011e+00	...	30	28779098	...	1.042423e-06
TCGA-05-4395-01A-01D-1265-08	302	299	3	219	9.933775e-03	coding only	1	28835288	...	80	215	302	2.774378e-06	7.456142e-06	1.047328e-05	-4.979917e+00	...	4	28779098	...	1.389898e-07
TCGA-05-4396-01A-21D-1855-08	563	554	9	410	1.598579e-02	coding only	1	28835288	...	144	401	563	4.993881e-06	1.390657e-05	1.952469e-05	-4.709416e+00	...	9	28779098	...	3.127270e-07
TCGA-05-4397-01A-01D-1265-08	935	914	21	722	2.245989e-02	coding only	1	28835288	...	191	688	932	6.623828e-06	2.385965e-05	3.232151e-05	-4.490508e+00	...	33	28779098	...	1.146666e-06
TCGA-05-4398-01A-01D-1265-08	922	908	14	686	1.518438e-02	coding only	1	28835288	...	222	649	922	7.698900e-06	2.250714e-05	3.197471e-05	-4.495193e+00	...	37	28779098	...	1.285655e-06
TCGA-05-4402-01A-01D-1265-08	197	196	1	152	5.076142e-03	coding only	1	28835288	...	44	146	197	1.525908e-06	5.063241e-06	6.831907e-06	-5.165458e+00	...	6	28779098	...	2.084846e-07
TCGA-05-4403-01A-01D-1265-08	161	160	1	123	6.211180e-03	coding only	1	28835288	...	37	116	161	1.283150e-06	4.022849e-06	5.583437e-06	-5.253098e+00	...	7	28779098	...	2.432321e-07
TCGA-05-4405-01A-21D-1855-08	501	494	7	372	1.397206e-02	coding only	1	28835288	...	122	359	501	4.230927e-06	1.245002e-05	1.737454e-05	-4.760087e+00	...	13	28779098	...	4.517167e-07
TCGA-05-4410-01A-21D-1855-08	1318	1299	19	993	1.441578e-02	coding only	1	28835288	...	306	966	1318	1.061200e-05	3.350062e-05	4.570788e-05	-4.340009e+00	...	26	28779098	...	9.034335e-07
TCGA-05-4415-01A-22D-1855-08	233	231	2	179	8.583691e-03	coding only	1	28835288	...	52	172	233	1.803346e-06	5.964914e-06	8.080377e-06	-5.092568e+00	...	7	28779098	...	2.432321e-07
TCGA-05-4417-01A-22D-1855-08	336	331	5	258	1.488095e-02	coding only	1	28835288	...	73	248	336	2.531620e-06	8.600573e-06	1.165239e-05	-4.933585e+00	...	10	28779098	...	3.474744e-07
TCGA-05-4418-01A-01D-1265-08	315	309	6	244	1.904762e-02	coding only	1	28835288	...	65	233	315	2.254182e-06	8.080377e-06	1.092411e-05	-4.961614e+00	...	10	28779098	...	3.474744e-07
TCGA-05-4420-01A-01D-1265-08	351	346	5	262	1.424501e-02	coding only	1	28835288	...	84	250	351	2.913097e-06	8.669932e-06	1.217259e-05	-4.914617e+00	...	12	28779098	...	4.169693e-07
TCGA-05-4422-01A-01D-1265-08	60	58	2	44	3.333333e-02	coding only	1	28835288	...	14	40	60	4.855162e-07	1.387189e-06	2.080784e-06	-5.681773e+00	...	4	28779098	...	1.389898e-07
TCGA-05-4424-01A-22D-1855-08	880	866	14	679	1.590909e-02	coding only	1	28835288	...	187	653	880	6.485109e-06	2.264586e-05	3.051816e-05	-4.515442e+00	...	25	28779098	...	8.686860e-07
TCGA-05-4425-01A-01D-1753-08	48	47	1	34	2.083333e-02	coding only	1	28835288	...	13	29	48	4.508365e-07	1.005712e-06	1.664627e-06	-5.778683e+00	...	5	28779098	...	1.737372e-07
TCGA-05-4426-01A-01D-1265-08	57	56	1	45	1.754386e-02	coding only	1	28835288	...	11	41	57	3.814770e-07	1.421869e-06	1.976745e-06	-5.704049e+00	...	4	28779098	...	1.389898e-07
TCGA-05-4427-01A-21D-1855-08	1191	1181	10	939	8.396306e-03	coding only	1	28835288	...	242	906	1190	8.392495e-06	3.141984e-05	4.126888e-05	-4.384377e+00	...	31	28779098	...	1.077171e-06
TCGA-05-4430-01A-02D-1265-08	348	345	3	272	8.620690e-03	coding only	1	28835288	...	73	261	348	2.531620e-06	9.051410e-06	1.206855e-05	-4.918345e+00	...	11	28779098	...	3.822218e-07
TCGA-05-4432-01A-01D-1265-08	800	788	12	599	1.500000e-02	coding only	1	28835288	...	189	575	800	6.554469e-06	1.994084e-05	2.774378e-05	-4.556834e+00	...	24	28779098	...	8.339386e-07
TCGA-05-4433-01A-22D-1855-08	51	49	2	37	3.921569e-02	coding only	1	28835288	...	12	35	51	4.161568e-07	1.213791e-06	1.768666e-06	-5.752354e+00	...	2	28779098	...	6.949488e-08
TCGA-05-4434-01A-01D-1265-08	65	64	1	48	1.538462e-02	coding only	1	28835288	...	16	40	65	5.548757e-07	1.387189e-06	2.254182e-06	-5.647011e+00	...	8	28779098	...	2.779795e-07
TCGA-05-5420-01A-01D-1625-08	121	120	1	90	8.264463e-03	coding only	1	28835288	...	30	85	121	1.040392e-06	2.947777e-06	4.196247e-06	-5.377139e+00	...	5	28779098	...	1.737372e-07
TCGA-05-5423-01A-01D-1625-08	173	172	1	135	5.780347e-03	coding only	1	28835288	...	37	132	173	1.283150e-06	4.577724e-06	5.999593e-06	-5.221878e+00	...	3	28779098	...	1.042423e-07
TCGA-05-5425-01A-02D-1625-08	719	713	6	551	8.344924e-03	coding only	1	28835288	...	162	534	719	5.618116e-06	1.851898e-05	2.493473e-05	-4.603195e+00	...	17	28779098	...	5.907065e-07
TCGA-05-5428-01A-01D-1625-08	443	437	6	332	1.354402e-02	coding only	1	28835288	...	105	321	442	3.641372e-06	1.113219e-05	1.532844e-05	-4.814502e+00	...	10	28779098	...	3.474744e-07
TCGA-05-5429-01A-01D-1625-08	45	44	1	34	2.222222e-02	coding only	1	28835288	...	10	30	45	3.467973e-07	1.040392e-06	1.560588e-06	-5.806712e+00	...	4	28779098	...	1.389898e-07
TCGA-05-5715-01A-01D-1625-08	139	138	1	104	7.194245e-03	coding only	1	28835288	...	34	97	139	1.179111e-06	3.363934e-06	4.820482e-06	-5.316909e+00	...	7	28779098	...	2.432321e-07
TCGA-17-Z000-01A-01W-0746-08	161	159	2	127	1.242236e-02	coding only	1	28835288	...	32	122	161	1.109751e-06	4.230927e-06	5.583437e-06	-5.253098e+00	...	5	28779098	...	1.737372e-07
TCGA-17-Z001-01A-01W-0746-08	236	234	2	178	8.474576e-03	coding only	1	28835288	...	56	161	233	1.942065e-06	5.583437e-06	8.080377e-06	-5.092568e+00	...	14	28779098	...	4.864642e-07
TCGA-17-Z002-01A-01W-0746-08	38	38	0	35	0	coding only	1	28835288	...	3	28	38	1.040392e-07	9.710324e-07	1.317830e-06	-5.880141e+00	...	7	28779098	...	2.432321e-07
TCGA-17-Z003-01A-01W-0746-08	340	332	8	253	2.352941e-02	coding only	1	28835288	...	79	248	339	2.739699e-06	8.600573e-06	1.175643e-05	-4.929725e+00	...	4	28779098	...	1.389898e-07
TCGA-17-Z004-01A-01W-0746-08	38	36	2	25	5.263158e-02	coding only	1	28835288	...	11	24	38	3.814770e-07	8.323135e-07	1.317830e-06	-5.880141e+00	...	1	28779098	...	3.474744e-08
TCGA-17-Z005-01A-01W-0746-08	119	118	1	82	8.403361e-03	coding only	1	28835288	...	36	78	119	1.248470e-06	2.705019e-06	4.126888e-06	-5.384377e+00	...	4	28779098	...	1.389898e-07
TCGA-17-Z007-01A-01W-0746-08	88	86	2	62	2.272727e-02	coding only	1	28835288	...	24	61	88	8.323135e-07	2.115464e-06	3.051816e-06	-5.515442e+00	...	1	28779098	...	3.474744e-08
TCGA-17-Z009-01A-01W-0746-08	91	87	4	72	4.395604e-02	coding only	1	28835288	...	15	67	91	5.201959e-07	2.323542e-06	3.155855e-06	-5.500883e+00	...	5	28779098	...	1.737372e-07
TCGA-17-Z010-01A-01W-0746-08	346	337	9	244	2.601156e-02	coding only	1	28835288	...	92	233	344	3.190535e-06	8.080377e-06	1.192983e-05	-4.923366e+00	...	10	28779098	...	3.474744e-07
TCGA-17-Z011-01A-01W-0746-08	143	141	2	108	1.398601e-02	coding only	1	28835288	...	32	96	138	1.109751e-06	3.329254e-06	4.785803e-06	-5.320045e+00	...	8	28779098	...	2.779795e-07
TCGA-17-Z013-01A-01W-0746-08	75	73	2	59	2.666667e-02	coding only	1	28835288	...	14	51	75	4.855162e-07	1.768666e-06	2.600980e-06	-5.584863e+00	...	8	28779098	...	2.779795e-07
TCGA-17-Z014-01A-01W-0746-08	427	422	5	316	1.170960e-02	coding only	1	28835288	...	106	307	426	3.676051e-06	1.064668e-05	1.477356e-05	-4.830515e+00	...	8	28779098	...	2.779795e-07
TCGA-17-Z015-01A-01W-0746-08	602	591	11	480	1.827243e-02	coding only	1	28835288	...	111	457	598	3.849450e-06	1.584864e-05	2.073848e-05	-4.683223e+00	...	19	28779098	...	6.602014e-07
TCGA-17-Z016-01A-01W-0746-08	332	329	3	261	9.036145e-03	coding only	1	28835288	...	68	249	332	2.358222e-06	8.635253e-06	1.151367e-05	-4.938786e+00	...	12	28779098	...	4.169693e-07
TCGA-17-Z017-01A-01W-0746-08	245	243	2	197	8.163265e-03	coding only	1	28835288	...	46	190	242	1.595268e-06	6.589149e-06	8.392495e-06	-5.076109e+00	...	4	28779098	...	1.389898e-07
TCGA-17-Z018-01A-01W-0746-08	281	274	7	213	2.491103e-02	coding only	1	28835288	...	61	204	281	2.115464e-06	7.074665e-06	9.745004e-06	-5.011218e+00	...	8	28779098	...	2.779795e-07
TCGA-17-Z019-01A-01W-0746-08	6	6	0	4	0	coding only	1	28835288	...	2	1	6	6.935946e-08	3.467973e-08	2.080784e-07	-6.681773e+00	...	3	28779098	...	1.042423e-07
TCGA-17-Z020-01A-01W-0746-08	162	161	1	122	6.172840e-03	coding only	1	28835288	...	39	118	162	1.352509e-06	4.092208e-06	5.618116e-06	-5.250409e+00	...	4	28779098	...	1.389898e-07
TCGA-17-Z021-01A-01W-0746-08	228	228	0	167	0	coding only	1	28835288	...	61	162	227	2.115464e-06	5.618116e-06	7.872299e-06	-5.103898e+00	...	4	28779098	...	1.389898e-07
TCGA-17-Z022-01A-01W-0746-08	1390	1369	21	1041	1.510791e-02	coding only	1	28835288	...	326	1003	1380	1.130559e-05	3.478377e-05	4.785803e-05	-4.320045e+00	...	29	28779098	...	1.007676e-06
TCGA-17-Z023-01A-01W-0746-08	475	469	6	376	1.263158e-02	coding only	1	28835288	...	93	350	471	3.225215e-06	1.213791e-05	1.633415e-05	-4.786903e+00	...	22	28779098	...	7.644437e-07
TCGA-17-Z025-01A-01W-0746-08	287	285	2	220	6.968641e-03	coding only	1	28835288	...	65	208	286	2.254182e-06	7.213384e-06	9.918403e-06	-5.003558e+00	...	11	28779098	...	3.822218e-07
TCGA-17-Z026-01A-01W-0746-08	1228	1208	20	907	1.628664e-02	coding only	1	28835288	...	300	891	1225	1.040392e-05	3.089964e-05	4.248267e-05	-4.371788e+00	...	14	28779098	...	4.864642e-07
TCGA-17-Z027-01A-01W-0746-08	121	120	1	94	8.264463e-03	coding only	1	28835288	...	26	90	121	9.016730e-07	3.121176e-06	4.196247e-06	-5.377139e+00	...	4	28779098	...	1.389898e-07
TCGA-17-Z028-01A-01W-0746-08	573	558	15	436	2.617801e-02	coding only	1	28835288	...	121	419	571	4.196247e-06	1.453081e-05	1.980213e-05	-4.703288e+00	...	16	28779098	...	5.559591e-07
TCGA-17-Z030-01A-01W-0746-08	688	676	12	523	1.744186e-02	coding only	1	28835288	...	153	500	687	5.305999e-06	1.733986e-05	2.382497e-05	-4.622968e+00	...	22	28779098	...	7.644437e-07
TCGA-17-Z031-01A-01W-0746-08	2586	2549	37	2004	1.430781e-02	coding only	1	28835288	...	542	1932	2576	1.879641e-05	6.700124e-05	8.933498e-05	-4.048978e+00	...	65	28779098	...	2.258584e-06
TCGA-17-Z032-01A-01W-0746-08	168	168	0	121	0	coding only	1	28835288	...	47	111	167	1.629947e-06	3.849450e-06	5.791515e-06	-5.237208e+00	...	9	28779098	...	3.127270e-07
TCGA-17-Z033-01A-01W-0746-08	233	231	2	172	8.583691e-03	coding only	1	28835288	...	58	162	228	2.011424e-06	5.618116e-06	7.906978e-06	-5.101989e+00	...	6	28779098	...	2.084846e-07
TCGA-17-Z036-01A-01W-0746-08	92	88	4	70	4.347826e-02	coding only	1	28835288	...	18	65	92	6.242351e-07	2.254182e-06	3.190535e-06	-5.496136e+00	...	5	28779098	...	1.737372e-07
TCGA-17-Z037-01A-01W-0746-08	173	171	2	129	1.156069e-02	coding only	1	28835288	...	42	124	173	1.456549e-06	4.300287e-06	5.999593e-06	-5.221878e+00	...	5	28779098	...	1.737372e-07
TCGA-17-Z041-01A-01W-0746-08	95	94	1	74	1.052632e-02	coding only	1	28835288	...	20	58	95	6.935946e-07	2.011424e-06	3.294574e-06	-5.482201e+00	...	16	28779098	...	5.559591e-07
TCGA-17-Z042-01A-01W-0746-08	529	524	5	408	9.451796e-03	coding only	1	28835288	...	116	395	529	4.022849e-06	1.369849e-05	1.834558e-05	-4.736469e+00	...	13	28779098	...	4.517167e-07
TCGA-17-Z043-01A-01W-0746-08	240	236	4	173	1.666667e-02	coding only	1	28835288	...	63	165	239	2.184823e-06	5.722155e-06	8.288455e-06	-5.081526e+00	...	7	28779098	...	2.432321e-07
TCGA-17-Z044-01A-01W-0746-08	140	136	4	97	2.857143e-02	coding only	1	28835288	...	39	91	140	1.352509e-06	3.155855e-06	4.855162e-06	-5.313796e+00	...	6	28779098	...	2.084846e-07
TCGA-17-Z045-01A-01W-0746-08	746	736	10	573	1.340483e-02	coding only	1	28835288	...	163	543	745	5.652796e-06	1.883109e-05	2.583640e-05	-4.587768e+00	...	29	28779098	...	1.007676e-06
TCGA-17-Z047-01A-01W-0747-08	44	43	1	34	2.272727e-02	coding only	1	28835288	...	9	27	44	3.121176e-07	9.363527e-07	1.525908e-06	-5.816472e+00	...	7	28779098	...	2.432321e-07
TCGA-17-Z048-01A-01W-0746-08	67	65	2	51	2.985075e-02	coding only	1	28835288	...	14	33	66	4.855162e-07	1.144431e-06	2.288862e-06	-5.640380e+00	...	17	28779098	...	5.907065e-07
TCGA-17-Z049-01A-01W-0746-08	556	552	4	427	7.194245e-03	coding only	1	28835288	...	125	412	556	4.334966e-06	1.428805e-05	1.928193e-05	-4.714850e+00	...	15	28779098	...	5.212116e-07
TCGA-17-Z050-01A-01W-0747-08	262	258	4	193	1.526718e-02	coding only	1	28835288	...	65	180	262	2.254182e-06	6.242351e-06	9.086089e-06	-5.041623e+00	...	13	28779098	...	4.517167e-07
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TCGA-49-4514-01A-21D-1855-08	382	375	7	282	1.832461e-02	coding only	1	28835288	...	93	271	382	3.225215e-06	9.398207e-06	1.324766e-05	-4.877861e+00	...	11	28779098	...	3.822218e-07
TCGA-49-6742-01A-11D-1855-08	335	330	5	242	1.492537e-02	coding only	1	28835288	...	88	235	335	3.051816e-06	8.149737e-06	1.161771e-05	-4.934879e+00	...	7	28779098	...	2.432321e-07
TCGA-49-6743-01A-11D-1855-08	895	886	9	661	1.005587e-02	coding only	1	28835288	...	225	635	895	7.802939e-06	2.202163e-05	3.103836e-05	-4.508101e+00	...	25	28779098	...	8.686860e-07
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TCGA-49-6761-01A-31D-1945-08	219	212	7	161	3.196347e-02	exome+100bp flanks	2	35742242	...	51	157	219	1.426883e-06	4.392562e-06	6.127204e-06	-5.212738e+00	...	4	32033033	...	1.248711e-07
TCGA-49-6767-01A-11D-1855-08	557	550	7	408	1.256732e-02	coding only	1	28835288	...	142	396	557	4.924522e-06	1.373317e-05	1.931661e-05	-4.714069e+00	...	12	28779098	...	4.169693e-07
TCGA-50-5044-01A-21D-1855-08	175	170	5	121	2.857143e-02	coding only	1	28835288	...	49	117	175	1.699307e-06	4.057528e-06	6.068953e-06	-5.216886e+00	...	4	28779098	...	1.389898e-07
TCGA-50-5045-01A-01D-1625-08	372	371	1	300	2.688172e-03	coding only	1	28835288	...	71	291	372	2.462261e-06	1.009180e-05	1.290086e-05	-4.889381e+00	...	9	28779098	...	3.127270e-07
TCGA-50-5049-01A-01D-1625-08	1038	1024	14	798	1.348748e-02	coding only	1	28835288	...	226	771	1038	7.837619e-06	2.673807e-05	3.599756e-05	-4.443727e+00	...	27	28779098	...	9.381809e-07
TCGA-50-5051-01A-21D-1855-08	146	146	0	104	0	coding only	1	28835288	...	42	97	146	1.456549e-06	3.363934e-06	5.063241e-06	-5.295571e+00	...	7	28779098	...	2.432321e-07
TCGA-50-5055-01A-01D-1625-08	27	27	0	25	0	coding only	1	28835288	...	2	24	27	6.935946e-08	8.323135e-07	9.363527e-07	-6.028561e+00	...	1	28779098	...	3.474744e-08
TCGA-50-5066-01A-01D-1625-08	335	328	7	267	2.089552e-02	coding only	1	28835288	...	61	259	335	2.115464e-06	8.982050e-06	1.161771e-05	-4.934879e+00	...	8	28779098	...	2.779795e-07
TCGA-50-5068-01A-01D-1625-08	119	117	2	91	1.680672e-02	coding only	1	28835288	...	26	85	119	9.016730e-07	2.947777e-06	4.126888e-06	-5.384377e+00	...	6	28779098	...	2.084846e-07
TCGA-50-5072-01A-21D-1855-08	199	198	1	159	5.025126e-03	coding only	1	28835288	...	39	149	199	1.352509e-06	5.167280e-06	6.901266e-06	-5.161071e+00	...	10	28779098	...	3.474744e-07
TCGA-50-5930-01A-11D-1753-08	1252	1226	26	944	2.076677e-02	coding only	1	28835288	...	282	918	1251	9.779684e-06	3.183599e-05	4.338434e-05	-4.362667e+00	...	25	28779098	...	8.686860e-07
TCGA-50-5931-01A-11D-1753-08	356	350	6	277	1.685393e-02	coding only	1	28835288	...	73	266	356	2.531620e-06	9.224808e-06	1.234598e-05	-4.908474e+00	...	11	28779098	...	3.822218e-07
TCGA-50-5932-01A-11D-1753-08	86	86	0	70	0	coding only	1	28835288	...	16	66	86	5.548757e-07	2.288862e-06	2.982457e-06	-5.525426e+00	...	4	28779098	...	1.389898e-07
TCGA-50-5933-01A-11D-1753-08	615	608	7	470	1.138211e-02	coding only	1	28835288	...	138	451	615	4.785803e-06	1.564056e-05	2.132803e-05	-4.671049e+00	...	19	28779098	...	6.602014e-07
TCGA-50-5935-01A-11D-1753-08	132	128	4	103	3.030303e-02	coding only	1	28835288	...	25	102	132	8.669932e-07	3.537332e-06	4.577724e-06	-5.339350e+00	...	1	28779098	...	3.474744e-08
TCGA-50-5936-01A-11D-1625-08	152	151	1	116	6.578947e-03	coding only	1	28835288	...	35	111	152	1.213791e-06	3.849450e-06	5.271319e-06	-5.278081e+00	...	5	28779098	...	1.737372e-07
TCGA-50-5939-01A-11D-1625-08	102	100	2	80	1.960784e-02	coding only	1	28835288	...	20	76	102	6.935946e-07	2.635659e-06	3.537332e-06	-5.451324e+00	...	4	28779098	...	1.389898e-07
TCGA-50-5941-01A-11D-1753-08	468	461	7	352	1.495726e-02	coding only	1	28835288	...	109	329	468	3.780091e-06	1.140963e-05	1.623011e-05	-4.789678e+00	...	23	28779098	...	7.991911e-07
TCGA-50-5942-01A-21D-1753-08	85	84	1	67	1.176471e-02	coding only	1	28835288	...	17	64	85	5.895554e-07	2.219503e-06	2.947777e-06	-5.530505e+00	...	3	28779098	...	1.042423e-07
TCGA-50-5944-01A-11D-1753-08	80	78	2	57	2.500000e-02	coding only	1	28835288	...	21	55	80	7.282743e-07	1.907385e-06	2.774378e-06	-5.556834e+00	...	2	28779098	...	6.949488e-08
TCGA-50-5946-01A-11D-1753-08	769	758	11	572	1.430429e-02	coding only	1	28835288	...	186	549	769	6.450430e-06	1.903917e-05	2.666871e-05	-4.573998e+00	...	23	28779098	...	7.991911e-07
TCGA-50-6590-01A-12D-1855-08	1076	1066	10	836	9.293680e-03	coding only	1	28835288	...	230	811	1076	7.976338e-06	2.812526e-05	3.731539e-05	-4.428112e+00	...	25	28779098	...	8.686860e-07
TCGA-50-6591-01A-11D-1753-08	71	70	1	56	1.408451e-02	coding only	1	28835288	...	14	51	71	4.855162e-07	1.768666e-06	2.462261e-06	-5.608666e+00	...	5	28779098	...	1.737372e-07
TCGA-50-6592-01A-11D-1753-08	332	328	4	258	1.204819e-02	coding only	1	28835288	...	70	250	332	2.427581e-06	8.669932e-06	1.151367e-05	-4.938786e+00	...	8	28779098	...	2.779795e-07
TCGA-50-6593-01A-11D-1753-08	365	364	1	272	2.739726e-03	coding only	1	28835288	...	92	265	365	3.190535e-06	9.190128e-06	1.265810e-05	-4.897631e+00	...	7	28779098	...	2.432321e-07
TCGA-50-6594-01A-11D-1753-08	584	578	6	464	1.027397e-02	coding only	1	28835288	...	114	440	583	3.953489e-06	1.525908e-05	2.021828e-05	-4.694256e+00	...	23	28779098	...	7.991911e-07
TCGA-50-6595-01A-12D-1855-08	124	123	1	99	8.064516e-03	coding only	1	28835288	...	24	96	124	8.323135e-07	3.329254e-06	4.300287e-06	-5.366503e+00	...	2	28779098	...	6.949488e-08
TCGA-50-6597-01A-11D-1855-08	74	71	3	52	4.054054e-02	coding only	1	28835288	...	19	50	74	6.589149e-07	1.733986e-06	2.566300e-06	-5.590693e+00	...	2	28779098	...	6.949488e-08
TCGA-50-6673-01A-11D-1945-08	67	63	4	53	5.970149e-02	coding only	1	28835288	...	10	45	67	3.467973e-07	1.560588e-06	2.323542e-06	-5.633849e+00	...	8	28779098	...	2.779795e-07
TCGA-50-7109-01A-11D-2036-08	285	280	5	221	1.754386e-02	coding only	1	28835288	...	59	211	285	2.046104e-06	7.317423e-06	9.883723e-06	-5.005079e+00	...	10	28779098	...	3.474744e-07
TCGA-50-8457-01A-11D-2323-08	66	64	2	51	3.030303e-02	coding only	1	28835288	...	13	47	66	4.508365e-07	1.629947e-06	2.288862e-06	-5.640380e+00	...	4	28779098	...	1.389898e-07
TCGA-50-8459-01A-11D-2323-08	104	102	2	75	1.923077e-02	coding only	1	28835288	...	27	70	104	9.363527e-07	2.427581e-06	3.606692e-06	-5.442891e+00	...	5	28779098	...	1.737372e-07
TCGA-50-8460-01A-11D-2323-08	33	33	0	29	0	coding only	1	28835288	...	4	26	33	1.387189e-07	9.016730e-07	1.144431e-06	-5.941410e+00	...	3	28779098	...	1.042423e-07
TCGA-53-7624-01A-11D-2063-08	902	892	10	682	1.108647e-02	coding only	1	28835288	...	210	657	902	7.282743e-06	2.278458e-05	3.128112e-05	-4.504718e+00	...	25	28779098	...	8.686860e-07
TCGA-53-7626-01A-12D-2063-08	410	405	5	315	1.219512e-02	coding only	1	28835288	...	90	305	409	3.121176e-06	1.057732e-05	1.418401e-05	-4.848201e+00	...	9	28779098	...	3.127270e-07
TCGA-53-7813-01A-11D-2167-08	180	179	1	146	5.555556e-03	coding only	1	28835288	...	33	135	180	1.144431e-06	4.681764e-06	6.242351e-06	-5.204652e+00	...	11	28779098	...	3.822218e-07
TCGA-53-A4EZ-01A-12D-A24P-08	594	583	11	436	1.851852e-02	coding only	1	28835288	...	147	419	594	5.097920e-06	1.453081e-05	2.059976e-05	-4.686138e+00	...	17	28779098	...	5.907065e-07
TCGA-55-1592-01A-01D-0969-08	663	655	8	510	1.206637e-02	coding only	1	28835288	...	145	490	662	5.028561e-06	1.699307e-05	2.295798e-05	-4.639066e+00	...	19	28779098	...	6.602014e-07
TCGA-55-1595-01A-01D-0969-08	376	371	5	282	1.329787e-02	coding only	1	28835288	...	89	270	375	3.086496e-06	9.363527e-06	1.300490e-05	-4.885893e+00	...	11	28779098	...	3.822218e-07
TCGA-55-5899-01A-11D-1625-08	508	499	9	375	1.771654e-02	coding only	1	28835288	...	124	363	508	4.300287e-06	1.258874e-05	1.761730e-05	-4.754061e+00	...	12	28779098	...	4.169693e-07
TCGA-55-6543-01A-11D-1753-08	25	25	0	20	0	coding only	1	28835288	...	5	18	25	1.733986e-07	6.242351e-07	8.669932e-07	-6.061984e+00	...	2	28779098	...	6.949488e-08
TCGA-55-6642-01A-11D-1855-08	148	145	3	113	2.027027e-02	coding only	1	28835288	...	32	107	148	1.109751e-06	3.710731e-06	5.132600e-06	-5.289663e+00	...	6	28779098	...	2.084846e-07
TCGA-55-6712-01A-11D-1855-08	199	194	5	132	2.512563e-02	coding only	1	28835288	...	62	124	199	2.150143e-06	4.300287e-06	6.901266e-06	-5.161071e+00	...	8	28779098	...	2.779795e-07
TCGA-55-6968-01A-11D-1945-08	640	624	16	472	2.500000e-02	coding only	1	28835288	...	152	457	640	5.271319e-06	1.584864e-05	2.219503e-05	-4.653744e+00	...	15	28779098	...	5.212116e-07
TCGA-55-6969-01A-11D-1945-08	525	521	4	393	7.619048e-03	coding only	1	28835288	...	128	376	525	4.439005e-06	1.303958e-05	1.820686e-05	-4.739765e+00	...	17	28779098	...	5.907065e-07
TCGA-55-6970-01A-11D-1945-08	200	196	4	161	2.000000e-02	coding only	1	28835288	...	35	155	200	1.213791e-06	5.375358e-06	6.935946e-06	-5.158894e+00	...	6	28779098	...	2.084846e-07
TCGA-55-6971-01A-11D-1945-08	102	101	1	78	9.803922e-03	coding only	1	28835288	...	23	73	101	7.976338e-07	2.531620e-06	3.502653e-06	-5.455603e+00	...	4	28779098	...	1.389898e-07
TCGA-55-6972-01A-11D-1945-08	316	314	2	233	6.329114e-03	coding only	1	28835288	...	81	224	316	2.809058e-06	7.768260e-06	1.095879e-05	-4.960237e+00	...	9	28779098	...	3.127270e-07
TCGA-55-6975-01A-11D-1945-08	94	92	2	75	2.127660e-02	coding only	1	28835288	...	17	70	94	5.895554e-07	2.427581e-06	3.259895e-06	-5.486796e+00	...	5	28779098	...	1.737372e-07
TCGA-55-6978-01A-11D-1945-08	41	40	1	32	2.439024e-02	coding only	1	28835288	...	8	30	41	2.774378e-07	1.040392e-06	1.421869e-06	-5.847140e+00	...	2	28779098	...	6.949488e-08
TCGA-55-6979-01A-11D-1945-08	177	173	4	140	2.259887e-02	coding only	1	28835288	...	33	134	177	1.144431e-06	4.647084e-06	6.138312e-06	-5.211951e+00	...	6	28779098	...	2.084846e-07
TCGA-55-6980-01A-11D-1945-08	22	21	1	18	4.545455e-02	coding only	1	28835288	...	3	16	22	1.040392e-07	5.548757e-07	7.629541e-07	-6.117502e+00	...	2	28779098	...	6.949488e-08
TCGA-55-6981-01A-11D-1945-08	70	68	2	58	2.857143e-02	coding only	1	28835288	...	10	55	70	3.467973e-07	1.907385e-06	2.427581e-06	-5.614826e+00	...	3	28779098	...	1.042423e-07
TCGA-55-6982-01A-11D-1945-08	283	283	0	209	0	coding only	1	28835288	...	74	198	283	2.566300e-06	6.866587e-06	9.814364e-06	-5.008138e+00	...	11	28779098	...	3.822218e-07
TCGA-55-6983-01A-11D-1945-08	135	134	1	108	7.407407e-03	coding only	1	28835288	...	26	101	135	9.016730e-07	3.502653e-06	4.681764e-06	-5.329591e+00	...	7	28779098	...	2.432321e-07
TCGA-55-6984-01A-11D-1945-08	25	25	0	19	0	coding only	1	28835288	...	6	15	25	2.080784e-07	5.201959e-07	8.669932e-07	-6.061984e+00	...	4	28779098	...	1.389898e-07
TCGA-55-6985-01A-11D-1945-08	514	503	11	389	2.140078e-02	coding only	1	28835288	...	114	376	514	3.953489e-06	1.303958e-05	1.782538e-05	-4.748961e+00	...	13	28779098	...	4.517167e-07
TCGA-55-6986-01A-11D-1945-08	27	27	0	20	0	coding only	1	28835288	...	7	17	27	2.427581e-07	5.895554e-07	9.363527e-07	-6.028561e+00	...	3	28779098	...	1.042423e-07
TCGA-55-6987-01A-11D-1945-08	253	251	2	193	7.905138e-03	coding only	1	28835288	...	58	191	253	2.011424e-06	6.623828e-06	8.773972e-06	-5.056804e+00	...	2	28779098	...	6.949488e-08
TCGA-55-7227-01A-11D-2036-08	186	184	2	141	1.075269e-02	coding only	1	28835288	...	43	137	186	1.491228e-06	4.751123e-06	6.450430e-06	-5.190411e+00	...	4	28779098	...	1.389898e-07
TCGA-55-7281-01A-11D-2036-08	524	519	5	413	9.541985e-03	coding only	1	28835288	...	106	392	524	3.676051e-06	1.359445e-05	1.817218e-05	-4.740593e+00	...	21	28779098	...	7.296963e-07
TCGA-55-7283-01A-11D-2036-08	265	260	5	201	1.886792e-02	coding only	1	28835288	...	59	194	265	2.046104e-06	6.727868e-06	9.190128e-06	-5.036678e+00	...	6	28779098	...	2.084846e-07
TCGA-55-7284-01B-11D-2238-08	71	71	0	50	0	coding only	1	28835288	...	21	49	71	7.282743e-07	1.699307e-06	2.462261e-06	-5.608666e+00	...	1	28779098	...	3.474744e-08
TCGA-55-7570-01A-11D-2036-08	434	428	6	335	1.382488e-02	coding only	1	28835288	...	93	318	434	3.225215e-06	1.102815e-05	1.505100e-05	-4.822435e+00	...	17	28779098	...	5.907065e-07
TCGA-55-7573-01A-11D-2036-08	62	62	0	51	0	coding only	1	28835288	...	11	46	62	3.814770e-07	1.595268e-06	2.150143e-06	-5.667533e+00	...	5	28779098	...	1.737372e-07
TCGA-55-7574-01A-11D-2036-08	309	305	4	242	1.294498e-02	coding only	1	28835288	...	63	236	309	2.184823e-06	8.184416e-06	1.071604e-05	-4.969966e+00	...	6	28779098	...	2.084846e-07
TCGA-55-7576-01A-11D-2063-08	466	463	3	354	6.437768e-03	coding only	1	28835288	...	109	339	466	3.780091e-06	1.175643e-05	1.616075e-05	-4.791538e+00	...	14	28779098	...	4.864642e-07
TCGA-55-7724-01A-11D-2167-08	295	288	7	228	2.372881e-02	coding only	1	28835288	...	60	219	295	2.080784e-06	7.594861e-06	1.023052e-05	-4.990102e+00	...	9	28779098	...	3.127270e-07
TCGA-55-7725-01A-11D-2167-08	158	154	4	115	2.531646e-02	coding only	1	28835288	...	39	104	158	1.352509e-06	3.606692e-06	5.479397e-06	-5.261267e+00	...	11	28779098	...	3.822218e-07
TCGA-55-7726-01A-11D-2167-08	132	132	0	104	0	coding only	1	28835288	...	28	100	132	9.710324e-07	3.467973e-06	4.577724e-06	-5.339350e+00	...	4	28779098	...	1.389898e-07
TCGA-55-7727-01A-11D-2167-08	304	295	9	215	2.960526e-02	coding only	1	28835288	...	80	212	304	2.774378e-06	7.352103e-06	1.054264e-05	-4.977051e+00	...	3	28779098	...	1.042423e-07
TCGA-55-7728-01A-11D-2184-08	120	118	2	94	1.666667e-02	coding only	1	28835288	...	24	90	120	8.323135e-07	3.121176e-06	4.161568e-06	-5.380743e+00	...	4	28779098	...	1.389898e-07
TCGA-55-7815-01A-11D-2167-08	170	166	4	125	2.352941e-02	coding only	1	28835288	...	41	120	170	1.421869e-06	4.161568e-06	5.895554e-06	-5.229475e+00	...	5	28779098	...	1.737372e-07
TCGA-55-7816-01A-11D-2167-08	12	11	1	10	8.333333e-02	coding only	1	28835288	...	1	5	12	3.467973e-08	1.733986e-07	4.161568e-07	-6.380743e+00	...	5	28779098	...	1.737372e-07
TCGA-55-7903-01A-11D-2167-08	191	187	4	145	2.094241e-02	coding only	1	28835288	...	42	134	191	1.456549e-06	4.647084e-06	6.623828e-06	-5.178891e+00	...	11	28779098	...	3.822218e-07
TCGA-55-7907-01A-11D-2167-08	1309	1291	18	1008	1.375095e-02	coding only	1	28835288	...	283	978	1307	9.814364e-06	3.391678e-05	4.532641e-05	-4.343649e+00	...	27	28779098	...	9.381809e-07
TCGA-55-7910-01A-11D-2167-08	360	357	3	291	8.333333e-03	coding only	1	28835288	...	66	279	359	2.288862e-06	9.675645e-06	1.245002e-05	-4.904830e+00	...	11	28779098	...	3.822218e-07
TCGA-55-7911-01A-11D-2167-08	281	276	5	212	1.779359e-02	coding only	1	28835288	...	64	206	281	2.219503e-06	7.144024e-06	9.745004e-06	-5.011218e+00	...	6	28779098	...	2.084846e-07
TCGA-55-7913-01B-11D-2238-08	401	395	6	307	1.496259e-02	coding only	1	28835288	...	88	297	401	3.051816e-06	1.029988e-05	1.390657e-05	-4.856780e+00	...	9	28779098	...	3.127270e-07
TCGA-55-7914-01A-11D-2167-08	206	202	4	155	1.941748e-02	coding only	1	28835288	...	47	149	206	1.629947e-06	5.167280e-06	7.144024e-06	-5.146057e+00	...	6	28779098	...	2.084846e-07
TCGA-55-7994-01A-11D-2184-08	1762	1731	31	1346	1.759364e-02	coding only	1	28835288	...	384	1286	1761	1.331702e-05	4.459813e-05	6.107100e-05	-4.214165e+00	...	60	28779098	...	2.084846e-06
TCGA-55-7995-01A-11D-2184-08	770	766	4	598	5.194805e-03	coding only	1	28835288	...	168	569	770	5.826195e-06	1.973277e-05	2.670339e-05	-4.573434e+00	...	28	28779098	...	9.729283e-07
TCGA-55-8085-01A-11D-2238-08	303	300	3	220	9.900990e-03	coding only	1	28835288	...	80	213	302	2.774378e-06	7.386782e-06	1.047328e-05	-4.979917e+00	...	6	28779098	...	2.084846e-07
TCGA-55-8087-01A-11D-2238-08	45	44	1	32	2.222222e-02	coding only	1	28835288	...	12	29	45	4.161568e-07	1.005712e-06	1.560588e-06	-5.806712e+00	...	3	28779098	...	1.042423e-07
TCGA-55-8089-01A-11D-2238-08	1479	1458	21	1114	1.419878e-02	coding only	1	28835288	...	344	1084	1479	1.192983e-05	3.759283e-05	5.129132e-05	-4.289956e+00	...	29	28779098	...	1.007676e-06
TCGA-55-8090-01A-11D-2238-08	106	105	1	78	9.433962e-03	coding only	1	28835288	...	27	71	105	9.363527e-07	2.462261e-06	3.641372e-06	-5.438735e+00	...	6	28779098	...	2.084846e-07
TCGA-55-8091-01A-11D-2238-08	39	39	0	34	0	coding only	1	28835288	...	5	29	39	1.733986e-07	1.005712e-06	1.352509e-06	-5.868860e+00	...	5	28779098	...	1.737372e-07
TCGA-55-8092-01A-11D-2238-08	660	644	16	476	2.424242e-02	coding only	1	28835288	...	168	459	660	5.826195e-06	1.591800e-05	2.288862e-05	-4.640380e+00	...	17	28779098	...	5.907065e-07
TCGA-55-8094-01A-11D-2238-08	527	521	6	396	1.138520e-02	coding only	1	28835288	...	125	377	527	4.334966e-06	1.307426e-05	1.827622e-05	-4.738114e+00	...	18	28779098	...	6.254539e-07
TCGA-55-8096-01A-11D-2238-08	179	179	0	139	0	coding only	1	28835288	...	40	132	179	1.387189e-06	4.577724e-06	6.207672e-06	-5.207071e+00	...	7	28779098	...	2.432321e-07
TCGA-55-8097-01A-11D-2238-08	146	142	4	111	2.739726e-02	coding only	1	28835288	...	31	102	146	1.075072e-06	3.537332e-06	5.063241e-06	-5.295571e+00	...	9	28779098	...	3.127270e-07
TCGA-55-8203-01A-11D-2238-08	489	485	4	371	8.179959e-03	coding only	1	28835288	...	114	362	489	3.953489e-06	1.255406e-05	1.695839e-05	-4.770615e+00	...	9	28779098	...	3.127270e-07
TCGA-55-8204-01A-11D-2238-08	260	254	6	195	2.307692e-02	coding only	1	28835288	...	59	186	260	2.046104e-06	6.450430e-06	9.016730e-06	-5.044951e+00	...	9	28779098	...	3.127270e-07
TCGA-55-8205-01A-11D-2238-08	608	601	7	460	1.151316e-02	coding only	1	28835288	...	141	436	608	4.889842e-06	1.512036e-05	2.108528e-05	-4.676021e+00	...	24	28779098	...	8.339386e-07
TCGA-55-8206-01A-11D-2238-08	39	39	0	30	0	coding only	1	28835288	...	9	25	38	3.121176e-07	8.669932e-07	1.317830e-06	-5.880141e+00	...	4	28779098	...	1.389898e-07
TCGA-55-8207-01A-11D-2238-08	369	366	3	280	8.130081e-03	coding only	1	28835288	...	85	265	368	2.947777e-06	9.190128e-06	1.276214e-05	-4.894076e+00	...	15	28779098	...	5.212116e-07
TCGA-55-8208-01A-11D-2238-08	539	529	10	399	1.855288e-02	coding only	1	28835288	...	130	386	539	4.508365e-06	1.338638e-05	1.869237e-05	-4.728336e+00	...	11	28779098	...	3.822218e-07
TCGA-55-8299-01A-11D-2284-08	372	368	4	288	1.075269e-02	coding only	1	28835288	...	80	275	372	2.774378e-06	9.536926e-06	1.290086e-05	-4.889381e+00	...	13	28779098	...	4.517167e-07
TCGA-55-8301-01A-11D-2284-08	403	402	1	300	2.481390e-03	coding only	1	28835288	...	102	268	403	3.537332e-06	9.294168e-06	1.397593e-05	-4.854619e+00	...	32	28779098	...	1.111918e-06
TCGA-55-8302-01A-11D-2323-08	788	779	9	610	1.142132e-02	coding only	1	28835288	...	169	579	788	5.860874e-06	2.007956e-05	2.732763e-05	-4.563398e+00	...	31	28779098	...	1.077171e-06
TCGA-55-8505-01A-11D-2393-08	46	46	0	33	0	coding only	1	28835288	...	13	32	46	4.508365e-07	1.109751e-06	1.595268e-06	-5.797166e+00	...	1	28779098	...	3.474744e-08
TCGA-55-8506-01A-11D-2393-08	2093	2069	24	1587	1.146679e-02	coding only	1	28835288	...	482	1422	2092	1.671563e-05	4.931458e-05	7.254999e-05	-4.139363e+00	...	162	28779098	...	5.629085e-06
TCGA-55-8507-01A-11D-2393-08	1099	1082	17	844	1.546861e-02	coding only	1	28835288	...	238	815	1099	8.253776e-06	2.826398e-05	3.811302e-05	-4.418927e+00	...	29	28779098	...	1.007676e-06
TCGA-55-8508-01A-11D-2393-08	210	210	0	162	0	coding only	1	28835288	...	48	152	210	1.664627e-06	5.271319e-06	7.282743e-06	-5.137705e+00	...	10	28779098	...	3.474744e-07
TCGA-55-8510-01A-11D-2393-08	365	360	5	270	1.369863e-02	coding only	1	28835288	...	90	257	365	3.121176e-06	8.912691e-06	1.265810e-05	-4.897631e+00	...	13	28779098	...	4.517167e-07
TCGA-55-8511-01A-11D-2393-08	679	669	10	509	1.472754e-02	coding only	1	28835288	...	160	488	679	5.548757e-06	1.692371e-05	2.354754e-05	-4.628055e+00	...	21	28779098	...	7.296963e-07
TCGA-55-8512-01A-11D-2393-08	46	46	0	35	0	coding only	1	28835288	...	11	32	46	3.814770e-07	1.109751e-06	1.595268e-06	-5.797166e+00	...	3	28779098	...	1.042423e-07
TCGA-55-8513-01A-11D-2393-08	11	11	0	10	0	coding only	1	28835288	...	1	10	11	3.467973e-08	3.467973e-07	3.814770e-07	-6.418532e+00	...	0	28779098	...	0
TCGA-55-8514-01A-11D-2393-08	329	324	5	251	1.519757e-02	coding only	1	28835288	...	73	235	329	2.531620e-06	8.149737e-06	1.140963e-05	-4.942728e+00	...	16	28779098	...	5.559591e-07
TCGA-55-8614-01A-11D-2393-08	278	274	4	204	1.438849e-02	coding only	1	28835288	...	70	191	278	2.427581e-06	6.623828e-06	9.640965e-06	-5.015879e+00	...	13	28779098	...	4.517167e-07
TCGA-55-8615-01A-11D-2393-08	150	149	1	102	6.666667e-03	coding only	1	28835288	...	47	98	150	1.629947e-06	3.398614e-06	5.201959e-06	-5.283833e+00	...	4	28779098	...	1.389898e-07
TCGA-55-8616-01A-11D-2393-08	564	554	10	430	1.773050e-02	coding only	1	28835288	...	124	411	562	4.300287e-06	1.425337e-05	1.949001e-05	-4.710188e+00	...	17	28779098	...	5.907065e-07
TCGA-55-8619-01A-11D-2393-08	31	31	0	25	0	coding only	1	28835288	...	6	22	31	2.080784e-07	7.629541e-07	1.075072e-06	-5.968563e+00	...	3	28779098	...	1.042423e-07
TCGA-55-8620-01A-11D-2393-08	570	557	13	425	2.280702e-02	coding only	1	28835288	...	132	402	570	4.577724e-06	1.394125e-05	1.976745e-05	-4.704049e+00	...	23	28779098	...	7.991911e-07
TCGA-55-8621-01A-11D-2393-08	138	136	2	106	1.449275e-02	coding only	1	28835288	...	30	102	138	1.040392e-06	3.537332e-06	4.785803e-06	-5.320045e+00	...	4	28779098	...	1.389898e-07
TCGA-55-A48X-01A-11D-A24D-08	457	452	5	367	1.094092e-02	coding only	1	28835288	...	85	360	457	2.947777e-06	1.248470e-05	1.584864e-05	-4.800008e+00	...	7	28779098	...	2.432321e-07
TCGA-55-A48Y-01A-11D-A24D-08	397	389	8	294	2.015113e-02	coding only	1	28835288	...	95	289	397	3.294574e-06	1.002244e-05	1.376785e-05	-4.861134e+00	...	5	28779098	...	1.737372e-07
TCGA-55-A48Z-01A-12D-A24P-08	62	59	3	43	4.838710e-02	coding only	1	28835288	...	16	42	62	5.548757e-07	1.456549e-06	2.150143e-06	-5.667533e+00	...	1	28779098	...	3.474744e-08
TCGA-55-A490-01A-11D-A24D-08	1507	1488	19	1158	1.260783e-02	coding only	1	28835288	...	330	1116	1506	1.144431e-05	3.870258e-05	5.222767e-05	-4.282099e+00	...	41	28779098	...	1.424645e-06
TCGA-55-A491-01A-11D-A24D-08	434	429	5	330	1.152074e-02	coding only	1	28835288	...	99	319	434	3.433293e-06	1.106283e-05	1.505100e-05	-4.822435e+00	...	11	28779098	...	3.822218e-07
TCGA-55-A492-01A-11D-A24D-08	350	345	5	260	1.428571e-02	coding only	1	28835288	...	85	242	349	2.947777e-06	8.392495e-06	1.210323e-05	-4.917099e+00	...	16	28779098	...	5.559591e-07
TCGA-55-A493-01A-11D-A24D-08	322	320	2	236	6.211180e-03	coding only	1	28835288	...	84	230	322	2.913097e-06	7.976338e-06	1.116687e-05	-4.952068e+00	...	6	28779098	...	2.084846e-07
TCGA-55-A494-01A-11D-A24P-08	268	263	5	205	1.865672e-02	coding only	1	28835288	...	58	198	268	2.011424e-06	6.866587e-06	9.294168e-06	-5.031789e+00	...	7	28779098	...	2.432321e-07
TCGA-55-A4DF-01A-11D-A24D-08	878	858	20	639	2.277904e-02	coding only	1	28835288	...	219	630	877	7.594861e-06	2.184823e-05	3.041412e-05	-4.516925e+00	...	8	28779098	...	2.779795e-07
TCGA-55-A4DG-01A-11D-A24D-08	785	769	16	616	2.038217e-02	coding only	1	28835288	...	153	587	784	5.305999e-06	2.035700e-05	2.718891e-05	-4.565608e+00	...	28	28779098	...	9.729283e-07
TCGA-62-8394-01A-11D-2323-08	174	171	3	127	1.724138e-02	coding only	1	28835288	...	44	121	174	1.525908e-06	4.196247e-06	6.034273e-06	-5.219375e+00	...	6	28779098	...	2.084846e-07
TCGA-62-8395-01A-11D-2323-08	89	88	1	70	1.123596e-02	coding only	1	28835288	...	18	64	89	6.242351e-07	2.219503e-06	3.086496e-06	-5.510534e+00	...	6	28779098	...	2.084846e-07
TCGA-62-8397-01A-11D-2323-08	38	38	0	30	0	coding only	1	28835288	...	8	23	37	2.774378e-07	7.976338e-07	1.283150e-06	-5.891723e+00	...	6	28779098	...	2.084846e-07
TCGA-62-8398-01A-11D-2323-08	104	101	3	80	2.884615e-02	coding only	1	28835288	...	21	75	104	7.282743e-07	2.600980e-06	3.606692e-06	-5.442891e+00	...	5	28779098	...	1.737372e-07
TCGA-62-8399-01A-21D-2323-08	601	591	10	453	1.663894e-02	coding only	1	28835288	...	138	436	601	4.785803e-06	1.512036e-05	2.084252e-05	-4.681050e+00	...	16	28779098	...	5.559591e-07
TCGA-62-8402-01A-11D-2323-08	73	71	2	43	2.739726e-02	coding only	1	28835288	...	27	41	72	9.363527e-07	1.421869e-06	2.496941e-06	-5.602592e+00	...	2	28779098	...	6.949488e-08
TCGA-62-A46O-01A-11D-A24D-08	1015	1002	13	773	1.280788e-02	coding only	1	28835288	...	229	733	1015	7.941658e-06	2.542024e-05	3.519993e-05	-4.453458e+00	...	40	28779098	...	1.389898e-06
TCGA-62-A46P-01A-11D-A24D-08	322	316	6	249	1.863354e-02	coding only	1	28835288	...	67	240	322	2.323542e-06	8.323135e-06	1.116687e-05	-4.952068e+00	...	9	28779098	...	3.127270e-07
TCGA-62-A46R-01A-11D-A24D-08	204	201	3	165	1.470588e-02	coding only	1	28835288	...	36	154	204	1.248470e-06	5.340678e-06	7.074665e-06	-5.150294e+00	...	11	28779098	...	3.822218e-07
TCGA-62-A46S-01A-11D-A24D-08	145	141	4	108	2.758621e-02	coding only	1	28835288	...	33	106	145	1.144431e-06	3.676051e-06	5.028561e-06	-5.298556e+00	...	2	28779098	...	6.949488e-08
TCGA-62-A46U-01A-11D-A24D-08	52	52	0	42	0	coding only	1	28835288	...	10	40	52	3.467973e-07	1.387189e-06	1.803346e-06	-5.743921e+00	...	2	28779098	...	6.949488e-08
TCGA-62-A46V-01A-11D-A24D-08	65	65	0	52	0	coding only	1	28835288	...	13	49	65	4.508365e-07	1.699307e-06	2.254182e-06	-5.647011e+00	...	3	28779098	...	1.042423e-07
TCGA-62-A46Y-01A-11D-A24D-08	45	45	0	37	0	coding only	1	28835288	...	8	29	45	2.774378e-07	1.005712e-06	1.560588e-06	-5.806712e+00	...	8	28779098	...	2.779795e-07
TCGA-62-A470-01A-11D-A24D-08	136	132	4	101	2.941176e-02	coding only	1	28835288	...	31	94	136	1.075072e-06	3.259895e-06	4.716443e-06	-5.326385e+00	...	7	28779098	...	2.432321e-07
TCGA-62-A471-01A-12D-A24D-08	127	124	3	89	2.362205e-02	coding only	1	28835288	...	35	86	127	1.213791e-06	2.982457e-06	4.404326e-06	-5.356121e+00	...	3	28779098	...	1.042423e-07
TCGA-62-A472-01A-11D-A24D-08	71	71	0	52	0	coding only	1	28835288	...	19	46	71	6.589149e-07	1.595268e-06	2.462261e-06	-5.608666e+00	...	6	28779098	...	2.084846e-07
TCGA-64-1676-01A-01D-0969-08	678	666	12	514	1.769912e-02	coding only	1	28835288	...	152	498	678	5.271319e-06	1.727051e-05	2.351286e-05	-4.628695e+00	...	16	28779098	...	5.559591e-07
TCGA-64-1677-01A-01W-0928-08	280	273	7	204	2.500000e-02	coding only	1	28835288	...	69	188	280	2.392901e-06	6.519789e-06	9.710324e-06	-5.012766e+00	...	16	28779098	...	5.559591e-07
TCGA-64-1679-01A-21D-2063-08	591	588	3	461	5.076142e-03	coding only	1	28835288	...	127	446	591	4.404326e-06	1.546716e-05	2.049572e-05	-4.688337e+00	...	15	28779098	...	5.212116e-07
TCGA-64-1681-01A-11D-2063-08	99	97	2	74	2.020202e-02	coding only	1	28835288	...	23	70	99	7.976338e-07	2.427581e-06	3.433293e-06	-5.464289e+00	...	4	28779098	...	1.389898e-07
TCGA-64-5774-01A-01D-1625-08	168	163	5	126	2.976190e-02	coding only	1	28835288	...	37	118	168	1.283150e-06	4.092208e-06	5.826195e-06	-5.234615e+00	...	8	28779098	...	2.779795e-07
TCGA-64-5775-01A-01D-1625-08	548	542	6	417	1.094891e-02	coding only	1	28835288	...	125	389	548	4.334966e-06	1.349041e-05	1.900449e-05	-4.721144e+00	...	28	28779098	...	9.729283e-07
TCGA-64-5778-01A-01D-1625-08	548	537	11	424	2.007299e-02	coding only	1	28835288	...	113	406	548	3.918809e-06	1.407997e-05	1.900449e-05	-4.721144e+00	...	18	28779098	...	6.254539e-07
TCGA-64-5779-01A-01D-1625-08	414	409	5	321	1.207729e-02	coding only	1	28835288	...	88	308	414	3.051816e-06	1.068136e-05	1.435741e-05	-4.842924e+00	...	13	28779098	...	4.517167e-07
TCGA-64-5781-01A-01D-1625-08	1311	1287	24	993	1.830664e-02	coding only	1	28835288	...	294	950	1311	1.019584e-05	3.294574e-05	4.546513e-05	-4.342322e+00	...	43	28779098	...	1.494140e-06
TCGA-64-5815-01A-01D-1625-08	204	201	3	148	1.470588e-02	coding only	1	28835288	...	53	143	204	1.838026e-06	4.959201e-06	7.074665e-06	-5.150294e+00	...	5	28779098	...	1.737372e-07
TCGA-67-3771-01A-01D-1040-01	1239	1227	12	935	9.685230e-03	coding only	1	28835288	...	292	893	1239	1.012648e-05	3.096900e-05	4.296819e-05	-4.366853e+00	...	42	28779098	...	1.459393e-06
TCGA-67-3772-01A-01W-0928-08	87	86	1	65	1.149425e-02	coding only	1	28835288	...	21	52	87	7.282743e-07	1.803346e-06	3.017137e-06	-5.520405e+00	...	13	28779098	...	4.517167e-07
TCGA-67-3773-01A-01D-1040-01	119	117	2	96	1.680672e-02	coding only	1	28835288	...	21	86	119	7.282743e-07	2.982457e-06	4.126888e-06	-5.384377e+00	...	10	28779098	...	3.474744e-07
TCGA-67-4679-01B-01D-1753-08	329	325	4	250	1.215805e-02	coding only	1	28835288	...	75	237	329	2.600980e-06	8.219096e-06	1.140963e-05	-4.942728e+00	...	13	28779098	...	4.517167e-07
TCGA-67-6215-01A-11D-1753-08	137	135	2	107	1.459854e-02	coding only	1	28835288	...	28	105	137	9.710324e-07	3.641372e-06	4.751123e-06	-5.323204e+00	...	2	28779098	...	6.949488e-08
TCGA-67-6216-01A-11D-1753-08	54	53	1	44	1.851852e-02	coding only	1	28835288	...	9	38	53	3.121176e-07	1.317830e-06	1.838026e-06	-5.735648e+00	...	6	28779098	...	2.084846e-07
TCGA-67-6217-01A-11D-1753-08	217	214	3	171	1.382488e-02	coding only	1	28835288	...	43	165	217	1.491228e-06	5.722155e-06	7.525501e-06	-5.123465e+00	...	6	28779098	...	2.084846e-07
TCGA-69-7760-01A-11D-2167-08	94	92	2	67	2.127660e-02	coding only	1	28835288	...	25	60	94	8.669932e-07	2.080784e-06	3.259895e-06	-5.486796e+00	...	7	28779098	...	2.432321e-07
TCGA-69-7761-01A-11D-2167-08	41	40	1	32	2.439024e-02	coding only	1	28835288	...	8	27	41	2.774378e-07	9.363527e-07	1.421869e-06	-5.847140e+00	...	5	28779098	...	1.737372e-07
TCGA-69-7763-01A-11D-2167-08	100	97	3	69	3.000000e-02	coding only	1	28835288	...	28	62	100	9.710324e-07	2.150143e-06	3.467973e-06	-5.459924e+00	...	7	28779098	...	2.432321e-07
TCGA-69-7764-01A-11D-2167-08	120	120	0	87	0	coding only	1	28835288	...	33	82	120	1.144431e-06	2.843738e-06	4.161568e-06	-5.380743e+00	...	5	28779098	...	1.737372e-07
TCGA-69-7765-01A-11D-2167-08	757	749	8	568	1.056803e-02	coding only	1	28835288	...	181	545	756	6.277031e-06	1.890045e-05	2.621788e-05	-4.581402e+00	...	23	28779098	...	7.991911e-07
TCGA-69-7973-01A-11D-2184-08	293	284	9	224	3.071672e-02	exome+100bp flanks	2	35742242	...	60	212	293	1.678686e-06	5.931357e-06	8.197583e-06	-5.086314e+00	...	12	32033033	...	3.746133e-07
TCGA-69-7974-01A-11D-2184-08	601	591	10	467	1.663894e-02	coding only	1	28835288	...	124	449	601	4.300287e-06	1.557120e-05	2.084252e-05	-4.681050e+00	...	18	28779098	...	6.254539e-07
TCGA-69-7978-01A-11D-2184-08	764	752	12	563	1.570681e-02	coding only	1	28835288	...	189	548	763	6.554469e-06	1.900449e-05	2.646063e-05	-4.577400e+00	...	15	28779098	...	5.212116e-07
TCGA-69-7979-01A-11D-2184-08	1652	1625	27	1281	1.634383e-02	coding only	1	28835288	...	344	1246	1651	1.192983e-05	4.321094e-05	5.725623e-05	-4.242177e+00	...	34	28779098	...	1.181413e-06
TCGA-69-7980-01A-11D-2184-08	940	931	9	725	9.574468e-03	coding only	1	28835288	...	204	692	937	7.074665e-06	2.399837e-05	3.249491e-05	-4.488185e+00	...	32	28779098	...	1.111918e-06
TCGA-69-8253-01A-11D-2284-08	184	180	4	131	2.173913e-02	coding only	1	28835288	...	49	126	184	1.699307e-06	4.369646e-06	6.381070e-06	-5.195106e+00	...	5	28779098	...	1.737372e-07
TCGA-69-8254-01A-11D-2284-08	92	86	6	75	6.521739e-02	coding only	1	28835288	...	11	71	92	3.814770e-07	2.462261e-06	3.190535e-06	-5.496136e+00	...	4	28779098	...	1.389898e-07
TCGA-69-8255-01A-11D-2284-08	333	326	7	256	2.102102e-02	coding only	1	28835288	...	70	241	333	2.427581e-06	8.357815e-06	1.154835e-05	-4.937480e+00	...	15	28779098	...	5.212116e-07
TCGA-69-A59K-01A-11D-A25L-08	559	554	5	421	8.944544e-03	coding only	1	28835288	...	133	406	559	4.612404e-06	1.407997e-05	1.938597e-05	-4.712512e+00	...	15	28779098	...	5.212116e-07
TCGA-71-6725-01A-11D-1855-08	72	70	2	49	2.777778e-02	coding only	1	28835288	...	21	48	72	7.282743e-07	1.664627e-06	2.496941e-06	-5.602592e+00	...	1	28779098	...	3.474744e-08
TCGA-71-8520-01A-11D-2393-08	110	108	2	84	1.818182e-02	coding only	1	28835288	...	24	79	110	8.323135e-07	2.739699e-06	3.814770e-06	-5.418532e+00	...	5	28779098	...	1.737372e-07
TCGA-73-4658-01A-01D-1753-08	357	350	7	272	1.960784e-02	coding only	1	28835288	...	78	265	357	2.705019e-06	9.190128e-06	1.238066e-05	-4.907256e+00	...	7	28779098	...	2.432321e-07
TCGA-73-4659-01A-01D-1265-08	244	243	1	184	4.098361e-03	coding only	1	28835288	...	59	174	244	2.046104e-06	6.034273e-06	8.461854e-06	-5.072534e+00	...	10	28779098	...	3.474744e-07
TCGA-73-4662-01A-01D-1265-08	266	261	5	205	1.879699e-02	coding only	1	28835288	...	56	195	266	1.942065e-06	6.762547e-06	9.224808e-06	-5.035043e+00	...	10	28779098	...	3.474744e-07
TCGA-73-4666-01A-01D-1265-08	423	415	8	314	1.891253e-02	coding only	1	28835288	...	101	301	423	3.502653e-06	1.043860e-05	1.466953e-05	-4.833584e+00	...	13	28779098	...	4.517167e-07
TCGA-73-4668-01A-01D-1265-08	501	497	4	412	7.984032e-03	coding only	1	28835288	...	85	399	500	2.947777e-06	1.383721e-05	1.733986e-05	-4.760954e+00	...	12	28779098	...	4.169693e-07
TCGA-73-4670-01A-01D-1265-08	400	391	9	308	2.250000e-02	coding only	1	28835288	...	83	284	398	2.878418e-06	9.849043e-06	1.380253e-05	-4.860041e+00	...	22	28779098	...	7.644437e-07
TCGA-73-4675-01A-01D-1265-08	84	82	2	63	2.380952e-02	coding only	1	28835288	...	19	55	84	6.589149e-07	1.907385e-06	2.913097e-06	-5.535645e+00	...	8	28779098	...	2.779795e-07
TCGA-73-4676-01A-01D-1753-08	111	111	0	84	0	coding only	1	28835288	...	27	77	111	9.363527e-07	2.670339e-06	3.849450e-06	-5.414601e+00	...	7	28779098	...	2.432321e-07
TCGA-73-4677-01A-01D-1265-08	285	280	5	220	1.754386e-02	coding only	1	28835288	...	60	214	285	2.080784e-06	7.421462e-06	9.883723e-06	-5.005079e+00	...	6	28779098	...	2.084846e-07
TCGA-73-7498-01A-12D-2184-08	139	137	2	100	1.438849e-02	coding only	1	28835288	...	37	91	139	1.283150e-06	3.155855e-06	4.820482e-06	-5.316909e+00	...	9	28779098	...	3.127270e-07
TCGA-73-7499-01A-11D-2184-08	92	92	0	74	0	coding only	1	28835288	...	18	71	92	6.242351e-07	2.462261e-06	3.190535e-06	-5.496136e+00	...	3	28779098	...	1.042423e-07
TCGA-75-5122-01A-01D-1753-08	183	179	4	130	2.185792e-02	coding only	1	28835288	...	49	124	183	1.699307e-06	4.300287e-06	6.346391e-06	-5.197473e+00	...	6	28779098	...	2.084846e-07
TCGA-75-5125-01A-01D-1753-08	208	203	5	155	2.403846e-02	coding only	1	28835288	...	48	140	208	1.664627e-06	4.855162e-06	7.213384e-06	-5.141861e+00	...	15	28779098	...	5.212116e-07
TCGA-75-5126-01A-01D-1753-08	756	746	10	568	1.322751e-02	coding only	1	28835288	...	178	552	756	6.172992e-06	1.914321e-05	2.621788e-05	-4.581402e+00	...	15	28779098	...	5.212116e-07
TCGA-75-5146-01A-01D-1625-08	225	223	2	172	8.888889e-03	coding only	1	28835288	...	51	162	225	1.768666e-06	5.618116e-06	7.802939e-06	-5.107742e+00	...	10	28779098	...	3.474744e-07
TCGA-75-5147-01A-01D-1625-08	57	57	0	47	0	coding only	1	28835288	...	10	43	57	3.467973e-07	1.491228e-06	1.976745e-06	-5.704049e+00	...	4	28779098	...	1.389898e-07
TCGA-75-6203-01A-11D-1753-08	23	23	0	15	0	coding only	1	28835288	...	8	12	23	2.774378e-07	4.161568e-07	7.976338e-07	-6.098196e+00	...	3	28779098	...	1.042423e-07
TCGA-75-6205-01A-11D-1753-08	57	57	0	48	0	coding only	1	28835288	...	9	47	57	3.121176e-07	1.629947e-06	1.976745e-06	-5.704049e+00	...	1	28779098	...	3.474744e-08
TCGA-75-6206-01A-11D-1753-08	105	104	1	85	9.523810e-03	coding only	1	28835288	...	19	82	105	6.589149e-07	2.843738e-06	3.641372e-06	-5.438735e+00	...	3	28779098	...	1.042423e-07
TCGA-75-6207-01A-11D-1753-08	87	87	0	62	0	coding only	1	28835288	...	25	59	87	8.669932e-07	2.046104e-06	3.017137e-06	-5.520405e+00	...	3	28779098	...	1.042423e-07
TCGA-75-6211-01A-11D-1753-08	406	397	9	318	2.216749e-02	coding only	1	28835288	...	79	311	406	2.739699e-06	1.078540e-05	1.407997e-05	-4.851398e+00	...	7	28779098	...	2.432321e-07
TCGA-75-6212-01A-11D-1753-08	28	27	1	20	3.571429e-02	coding only	1	28835288	...	7	17	28	2.427581e-07	5.895554e-07	9.710324e-07	-6.012766e+00	...	3	28779098	...	1.042423e-07
TCGA-75-6214-01A-41D-1945-08	851	836	15	649	1.762632e-02	coding only	1	28835288	...	187	629	851	6.485109e-06	2.181355e-05	2.951245e-05	-4.529995e+00	...	20	28779098	...	6.949488e-07
TCGA-75-7025-01A-12D-1945-08	49	49	0	34	0	coding only	1	28835288	...	15	31	49	5.201959e-07	1.075072e-06	1.699307e-06	-5.769728e+00	...	3	28779098	...	1.042423e-07
TCGA-75-7027-01A-11D-1945-08	267	263	4	195	1.498127e-02	coding only	1	28835288	...	68	186	267	2.358222e-06	6.450430e-06	9.259488e-06	-5.033413e+00	...	9	28779098	...	3.127270e-07
TCGA-75-7030-01A-11D-1945-08	23	23	0	20	0	coding only	1	28835288	...	3	20	23	1.040392e-07	6.935946e-07	7.976338e-07	-6.098196e+00	...	0	28779098	...	0
TCGA-75-7031-01A-11D-1945-08	247	238	9	181	3.643725e-02	exome+100bp flanks	2	35742242	...	57	168	247	1.594752e-06	4.700321e-06	6.910591e-06	-5.160485e+00	...	13	32033033	...	4.058311e-07
TCGA-78-7143-01A-11D-2036-08	48	47	1	40	2.083333e-02	coding only	1	28835288	...	7	36	48	2.427581e-07	1.248470e-06	1.664627e-06	-5.778683e+00	...	4	28779098	...	1.389898e-07
TCGA-78-7145-01A-11D-2036-08	219	217	2	169	9.132420e-03	coding only	1	28835288	...	48	162	219	1.664627e-06	5.618116e-06	7.594861e-06	-5.119480e+00	...	7	28779098	...	2.432321e-07
TCGA-78-7146-01A-11D-2036-08	409	403	6	304	1.466993e-02	coding only	1	28835288	...	99	296	409	3.433293e-06	1.026520e-05	1.418401e-05	-4.848201e+00	...	8	28779098	...	2.779795e-07
TCGA-78-7147-01A-11D-2036-08	393	388	5	284	1.272265e-02	coding only	1	28835288	...	104	270	393	3.606692e-06	9.363527e-06	1.362913e-05	-4.865532e+00	...	14	28779098	...	4.864642e-07
TCGA-78-7148-01A-11D-2036-08	266	263	3	205	1.127820e-02	coding only	1	28835288	...	58	195	265	2.011424e-06	6.762547e-06	9.190128e-06	-5.036678e+00	...	10	28779098	...	3.474744e-07
TCGA-78-7149-01A-11D-2036-08	187	181	6	135	3.208556e-02	exome+100bp flanks	2	35742242	...	46	132	187	1.286993e-06	3.693109e-06	5.231905e-06	-5.281340e+00	...	3	32033033	...	9.365332e-08
TCGA-78-7150-01A-21D-2036-08	473	468	5	350	1.057082e-02	coding only	1	28835288	...	118	336	473	4.092208e-06	1.165239e-05	1.640351e-05	-4.785063e+00	...	14	28779098	...	4.864642e-07
TCGA-78-7152-01A-11D-2036-08	236	233	3	175	1.271186e-02	coding only	1	28835288	...	57	166	235	1.976745e-06	5.756835e-06	8.149737e-06	-5.088856e+00	...	9	28779098	...	3.127270e-07
TCGA-78-7153-01A-11D-2036-08	147	146	1	108	6.802721e-03	coding only	1	28835288	...	38	103	147	1.317830e-06	3.572012e-06	5.097920e-06	-5.292607e+00	...	5	28779098	...	1.737372e-07
TCGA-78-7154-01A-11D-2036-08	295	289	6	197	2.033898e-02	coding only	1	28835288	...	92	189	295	3.190535e-06	6.554469e-06	1.023052e-05	-4.990102e+00	...	8	28779098	...	2.779795e-07
TCGA-78-7155-01A-11D-2036-08	1703	1673	30	1350	1.761597e-02	coding only	1	28835288	...	323	1280	1702	1.120155e-05	4.439005e-05	5.902490e-05	-4.228965e+00	...	69	28779098	...	2.397573e-06
TCGA-78-7156-01A-11D-2036-08	378	369	9	295	2.380952e-02	coding only	1	28835288	...	74	284	378	2.566300e-06	9.849043e-06	1.310894e-05	-4.882432e+00	...	11	28779098	...	3.822218e-07
TCGA-78-7158-01A-11D-2036-08	273	268	5	218	1.831502e-02	coding only	1	28835288	...	50	209	273	1.733986e-06	7.248064e-06	9.467566e-06	-5.023762e+00	...	9	28779098	...	3.127270e-07
TCGA-78-7159-01A-11D-2036-08	349	345	4	260	1.146132e-02	coding only	1	28835288	...	85	246	349	2.947777e-06	8.531214e-06	1.210323e-05	-4.917099e+00	...	13	28779098	...	4.517167e-07
TCGA-78-7160-01A-11D-2036-08	53	53	0	33	0	coding only	1	28835288	...	20	31	53	6.935946e-07	1.075072e-06	1.838026e-06	-5.735648e+00	...	2	28779098	...	6.949488e-08
TCGA-78-7161-01A-11D-2036-08	217	213	4	156	1.843318e-02	coding only	1	28835288	...	57	148	217	1.976745e-06	5.132600e-06	7.525501e-06	-5.123465e+00	...	8	28779098	...	2.779795e-07
TCGA-78-7162-01A-21D-2063-08	104	104	0	76	0	coding only	1	28835288	...	28	73	104	9.710324e-07	2.531620e-06	3.606692e-06	-5.442891e+00	...	3	28779098	...	1.042423e-07
TCGA-78-7163-01A-12D-2063-08	28	28	0	22	0	coding only	1	28835288	...	6	20	28	2.080784e-07	6.935946e-07	9.710324e-07	-6.012766e+00	...	2	28779098	...	6.949488e-08
TCGA-78-7166-01A-12D-2063-08	254	253	1	187	3.937008e-03	coding only	1	28835288	...	66	179	254	2.288862e-06	6.207672e-06	8.808651e-06	-5.055091e+00	...	8	28779098	...	2.779795e-07
TCGA-78-7167-01A-11D-2063-08	116	112	4	86	3.448276e-02	coding only	1	28835288	...	26	81	116	9.016730e-07	2.809058e-06	4.022849e-06	-5.395466e+00	...	5	28779098	...	1.737372e-07
TCGA-78-7220-01A-11D-2036-08	938	928	10	709	1.066098e-02	coding only	1	28835288	...	219	678	937	7.594861e-06	2.351286e-05	3.249491e-05	-4.488185e+00	...	30	28779098	...	1.042423e-06
TCGA-78-7535-01A-11D-2063-08	201	199	2	141	9.950249e-03	coding only	1	28835288	...	58	136	201	2.011424e-06	4.716443e-06	6.970626e-06	-5.156728e+00	...	5	28779098	...	1.737372e-07
TCGA-78-7536-01A-11D-2063-08	679	666	13	508	1.914580e-02	coding only	1	28835288	...	158	489	679	5.479397e-06	1.695839e-05	2.354754e-05	-4.628055e+00	...	19	28779098	...	6.602014e-07
TCGA-78-7537-01A-11D-2063-08	160	158	2	132	1.250000e-02	coding only	1	28835288	...	26	119	160	9.016730e-07	4.126888e-06	5.548757e-06	-5.255804e+00	...	13	28779098	...	4.517167e-07
TCGA-78-7539-01A-11D-2063-08	562	553	9	414	1.601423e-02	coding only	1	28835288	...	139	401	562	4.820482e-06	1.390657e-05	1.949001e-05	-4.710188e+00	...	13	28779098	...	4.517167e-07
TCGA-78-7540-01A-11D-2063-08	36	36	0	25	0	coding only	1	28835288	...	11	24	36	3.814770e-07	8.323135e-07	1.248470e-06	-5.903622e+00	...	1	28779098	...	3.474744e-08
TCGA-78-7542-01A-21D-2063-08	432	424	8	317	1.851852e-02	coding only	1	28835288	...	107	302	432	3.710731e-06	1.047328e-05	1.498164e-05	-4.824441e+00	...	15	28779098	...	5.212116e-07
TCGA-78-7633-01A-11D-2063-08	120	119	1	94	8.333333e-03	coding only	1	28835288	...	25	87	120	8.669932e-07	3.017137e-06	4.161568e-06	-5.380743e+00	...	7	28779098	...	2.432321e-07
TCGA-78-8640-01A-11D-2393-08	833	824	9	646	1.080432e-02	coding only	1	28835288	...	178	621	831	6.172992e-06	2.153611e-05	2.881886e-05	-4.540323e+00	...	21	28779098	...	7.296963e-07
TCGA-78-8648-01A-11D-2393-08	17	17	0	16	0	coding only	1	28835288	...	1	16	17	3.467973e-08	5.548757e-07	5.895554e-07	-6.229475e+00	...	0	28779098	...	0
TCGA-78-8655-01A-11D-2393-08	126	125	1	98	7.936508e-03	coding only	1	28835288	...	27	90	126	9.363527e-07	3.121176e-06	4.369646e-06	-5.359554e+00	...	8	28779098	...	2.779795e-07
TCGA-78-8660-01A-11D-2393-08	294	292	2	219	6.802721e-03	coding only	1	28835288	...	73	211	294	2.531620e-06	7.317423e-06	1.019584e-05	-4.991577e+00	...	8	28779098	...	2.779795e-07
TCGA-78-8662-01A-11D-2393-08	1303	1288	15	992	1.151190e-02	coding only	1	28835288	...	296	967	1303	1.026520e-05	3.353530e-05	4.518769e-05	-4.344980e+00	...	24	28779098	...	8.339386e-07
TCGA-80-5607-01A-31D-1945-08	152	149	3	116	1.973684e-02	coding only	1	28835288	...	33	112	152	1.144431e-06	3.884130e-06	5.271319e-06	-5.278081e+00	...	4	28779098	...	1.389898e-07
TCGA-80-5608-01A-31D-1945-08	192	189	3	146	1.562500e-02	coding only	1	28835288	...	43	141	192	1.491228e-06	4.889842e-06	6.658508e-06	-5.176623e+00	...	5	28779098	...	1.737372e-07
TCGA-80-5611-01A-01D-1625-08	240	236	4	188	1.666667e-02	coding only	1	28835288	...	48	176	240	1.664627e-06	6.103632e-06	8.323135e-06	-5.079713e+00	...	12	28779098	...	4.169693e-07
TCGA-83-5908-01A-21D-2284-08	286	286	0	220	0	coding only	1	28835288	...	66	212	286	2.288862e-06	7.352103e-06	9.918403e-06	-5.003558e+00	...	8	28779098	...	2.779795e-07
TCGA-86-6562-01A-11D-1753-08	67	67	0	53	0	coding only	1	28835288	...	14	52	67	4.855162e-07	1.803346e-06	2.323542e-06	-5.633849e+00	...	1	28779098	...	3.474744e-08
TCGA-86-6851-01A-11D-1945-08	1065	1044	21	817	1.971831e-02	coding only	1	28835288	...	227	786	1065	7.872299e-06	2.725827e-05	3.693391e-05	-4.432575e+00	...	31	28779098	...	1.077171e-06
TCGA-86-7701-01A-11D-2167-08	238	236	2	181	8.403361e-03	coding only	1	28835288	...	55	169	238	1.907385e-06	5.860874e-06	8.253776e-06	-5.083347e+00	...	10	28779098	...	3.474744e-07
TCGA-86-7711-01A-11D-2063-08	274	272	2	202	7.299270e-03	coding only	1	28835288	...	70	190	274	2.427581e-06	6.589149e-06	9.502246e-06	-5.022174e+00	...	12	28779098	...	4.169693e-07
TCGA-86-7713-01A-11D-2063-08	180	178	2	142	1.111111e-02	coding only	1	28835288	...	36	133	180	1.248470e-06	4.612404e-06	6.242351e-06	-5.204652e+00	...	9	28779098	...	3.127270e-07
TCGA-86-7714-01A-12D-2167-08	98	95	3	70	3.061224e-02	coding only	1	28835288	...	25	63	98	8.669932e-07	2.184823e-06	3.398614e-06	-5.468698e+00	...	7	28779098	...	2.432321e-07
TCGA-86-7953-01A-11D-2184-08	67	67	0	54	0	coding only	1	28835288	...	13	51	67	4.508365e-07	1.768666e-06	2.323542e-06	-5.633849e+00	...	3	28779098	...	1.042423e-07
TCGA-86-7954-01A-11D-2184-08	273	272	1	192	3.663004e-03	coding only	1	28835288	...	80	187	273	2.774378e-06	6.485109e-06	9.467566e-06	-5.023762e+00	...	5	28779098	...	1.737372e-07
TCGA-86-7955-01A-11D-2184-08	352	346	6	263	1.704545e-02	coding only	1	28835288	...	83	247	352	2.878418e-06	8.565893e-06	1.220726e-05	-4.913382e+00	...	16	28779098	...	5.559591e-07
TCGA-86-8054-01A-11D-2238-08	264	259	5	208	1.893939e-02	coding only	1	28835288	...	51	194	263	1.768666e-06	6.727868e-06	9.120769e-06	-5.039969e+00	...	13	28779098	...	4.517167e-07
TCGA-86-8055-01A-11D-2238-08	71	69	2	50	2.816901e-02	coding only	1	28835288	...	19	48	71	6.589149e-07	1.664627e-06	2.462261e-06	-5.608666e+00	...	2	28779098	...	6.949488e-08
TCGA-86-8056-01A-11D-2238-08	350	344	6	271	1.714286e-02	coding only	1	28835288	...	73	264	350	2.531620e-06	9.155449e-06	1.213791e-05	-4.915856e+00	...	7	28779098	...	2.432321e-07
TCGA-86-8073-01A-11D-2238-08	1828	1805	23	1382	1.258206e-02	coding only	1	28835288	...	423	1342	1827	1.466953e-05	4.654020e-05	6.335987e-05	-4.198186e+00	...	37	28779098	...	1.285655e-06
TCGA-86-8074-01A-11D-2238-08	82	80	2	63	2.439024e-02	coding only	1	28835288	...	17	59	82	5.895554e-07	2.046104e-06	2.843738e-06	-5.546110e+00	...	4	28779098	...	1.389898e-07
TCGA-86-8075-01A-11D-2238-08	63	63	0	50	0	coding only	1	28835288	...	13	44	63	4.508365e-07	1.525908e-06	2.184823e-06	-5.660584e+00	...	6	28779098	...	2.084846e-07
TCGA-86-8076-01A-31D-2238-08	89	86	3	68	3.370787e-02	coding only	1	28835288	...	18	65	89	6.242351e-07	2.254182e-06	3.086496e-06	-5.510534e+00	...	3	28779098	...	1.042423e-07
TCGA-86-8278-01A-11D-2284-08	129	128	1	95	7.751938e-03	coding only	1	28835288	...	33	95	129	1.144431e-06	3.294574e-06	4.473685e-06	-5.349335e+00	...	0	28779098	...	0
TCGA-86-8279-01A-11D-2284-08	585	576	9	447	1.538462e-02	coding only	1	28835288	...	129	435	585	4.473685e-06	1.508568e-05	2.028764e-05	-4.692768e+00	...	12	28779098	...	4.169693e-07
TCGA-86-8280-01A-11D-2284-08	65	65	0	52	0	coding only	1	28835288	...	13	48	65	4.508365e-07	1.664627e-06	2.254182e-06	-5.647011e+00	...	4	28779098	...	1.389898e-07
TCGA-86-8281-01A-11D-2284-08	320	313	7	235	2.187500e-02	coding only	1	28835288	...	78	225	320	2.705019e-06	7.802939e-06	1.109751e-05	-4.954774e+00	...	10	28779098	...	3.474744e-07
TCGA-86-8358-01A-11D-2323-08	1235	1215	20	935	1.619433e-02	coding only	1	28835288	...	280	906	1234	9.710324e-06	3.141984e-05	4.279479e-05	-4.368609e+00	...	28	28779098	...	9.729283e-07
TCGA-86-8359-01A-11D-2323-08	194	189	5	144	2.577320e-02	coding only	1	28835288	...	45	132	194	1.560588e-06	4.577724e-06	6.727868e-06	-5.172123e+00	...	12	28779098	...	4.169693e-07
TCGA-86-8585-01A-11D-2393-08	645	636	9	511	1.395349e-02	coding only	1	28835288	...	125	482	645	4.334966e-06	1.671563e-05	2.236843e-05	-4.650365e+00	...	28	28779098	...	9.729283e-07
TCGA-86-8668-01A-11D-2393-08	45	45	0	33	0	coding only	1	28835288	...	11	32	44	3.814770e-07	1.109751e-06	1.525908e-06	-5.816472e+00	...	1	28779098	...	3.474744e-08
TCGA-86-8669-01A-11D-2393-08	158	155	3	113	1.898734e-02	coding only	1	28835288	...	41	102	157	1.421869e-06	3.537332e-06	5.444718e-06	-5.264025e+00	...	10	28779098	...	3.474744e-07
TCGA-86-8671-01A-11D-2393-08	71	70	1	52	1.408451e-02	coding only	1	28835288	...	18	49	71	6.242351e-07	1.699307e-06	2.462261e-06	-5.608666e+00	...	2	28779098	...	6.949488e-08
TCGA-86-8672-01A-21D-2393-08	362	360	2	264	5.524862e-03	coding only	1	28835288	...	96	250	362	3.329254e-06	8.669932e-06	1.255406e-05	-4.901216e+00	...	13	28779098	...	4.517167e-07
TCGA-86-8673-01A-11D-2393-08	573	563	10	437	1.745201e-02	coding only	1	28835288	...	126	412	573	4.369646e-06	1.428805e-05	1.987149e-05	-4.701770e+00	...	25	28779098	...	8.686860e-07
TCGA-86-8674-01A-21D-2393-08	353	352	1	267	2.832861e-03	coding only	1	28835288	...	85	251	353	2.947777e-06	8.704612e-06	1.224194e-05	-4.912150e+00	...	16	28779098	...	5.559591e-07
TCGA-86-A456-01A-11D-A24D-08	432	422	10	327	2.314815e-02	coding only	1	28835288	...	95	319	432	3.294574e-06	1.106283e-05	1.498164e-05	-4.824441e+00	...	8	28779098	...	2.779795e-07
TCGA-86-A4JF-01A-11D-A24P-08	1651	1622	29	1227	1.756511e-02	coding only	1	28835288	...	395	1083	1651	1.369849e-05	3.755815e-05	5.725623e-05	-4.242177e+00	...	143	28779098	...	4.968884e-06
TCGA-86-A4P7-01A-11D-A24P-08	93	88	5	72	5.376344e-02	coding only	1	28835288	...	16	67	93	5.548757e-07	2.323542e-06	3.225215e-06	-5.491441e+00	...	5	28779098	...	1.737372e-07
TCGA-86-A4P8-01A-11D-A24P-08	2	2	0	1	0	coding only	1	28835288	...	1	0	2	3.467973e-08	0	6.935946e-08	-7.158894e+00	...	1	28779098	...	3.474744e-08
TCGA-91-6828-01A-11D-1855-08	361	355	6	296	1.662050e-02	coding only	1	28835288	...	59	279	361	2.046104e-06	9.675645e-06	1.251938e-05	-4.902417e+00	...	17	28779098	...	5.907065e-07
TCGA-91-6829-01A-21D-1855-08	742	736	6	579	8.086253e-03	coding only	1	28835288	...	157	559	742	5.444718e-06	1.938597e-05	2.573236e-05	-4.589520e+00	...	20	28779098	...	6.949488e-07
TCGA-91-6830-01A-11D-1945-08	356	350	6	259	1.685393e-02	coding only	1	28835288	...	91	252	356	3.155855e-06	8.739292e-06	1.234598e-05	-4.908474e+00	...	7	28779098	...	2.432321e-07
TCGA-91-6831-01A-11D-1855-08	340	335	5	259	1.470588e-02	coding only	1	28835288	...	76	245	340	2.635659e-06	8.496534e-06	1.179111e-05	-4.928445e+00	...	14	28779098	...	4.864642e-07
TCGA-91-6835-01A-11D-1855-08	117	115	2	86	1.709402e-02	coding only	1	28835288	...	29	84	117	1.005712e-06	2.913097e-06	4.057528e-06	-5.391738e+00	...	2	28779098	...	6.949488e-08
TCGA-91-6836-01A-21D-1855-08	501	494	7	379	1.397206e-02	coding only	1	28835288	...	115	366	501	3.988169e-06	1.269278e-05	1.737454e-05	-4.760087e+00	...	13	28779098	...	4.517167e-07
TCGA-91-6840-01A-11D-1945-08	134	133	1	105	7.462687e-03	coding only	1	28835288	...	28	99	134	9.710324e-07	3.433293e-06	4.647084e-06	-5.332819e+00	...	6	28779098	...	2.084846e-07
TCGA-91-6847-01A-11D-1945-08	107	105	2	68	1.869159e-02	coding only	1	28835288	...	37	61	107	1.283150e-06	2.115464e-06	3.710731e-06	-5.430541e+00	...	7	28779098	...	2.432321e-07
TCGA-91-6848-01A-11D-1945-08	683	675	8	509	1.171303e-02	coding only	1	28835288	...	166	495	683	5.756835e-06	1.716647e-05	2.368626e-05	-4.625504e+00	...	14	28779098	...	4.864642e-07
TCGA-91-6849-01A-11D-1945-08	133	133	0	103	0	coding only	1	28835288	...	30	94	133	1.040392e-06	3.259895e-06	4.612404e-06	-5.336073e+00	...	8	28779098	...	2.779795e-07
TCGA-91-7771-01A-11D-2167-08	268	263	5	206	1.865672e-02	coding only	1	28835288	...	57	196	268	1.976745e-06	6.797227e-06	9.294168e-06	-5.031789e+00	...	10	28779098	...	3.474744e-07
TCGA-91-8496-01A-11D-2393-08	50	48	2	37	4.000000e-02	coding only	1	28835288	...	11	31	50	3.814770e-07	1.075072e-06	1.733986e-06	-5.760954e+00	...	6	28779098	...	2.084846e-07
TCGA-91-8497-01A-11D-2393-08	63	62	1	48	1.587302e-02	coding only	1	28835288	...	14	43	63	4.855162e-07	1.491228e-06	2.184823e-06	-5.660584e+00	...	5	28779098	...	1.737372e-07
TCGA-91-8499-01A-11D-2393-08	354	348	6	272	1.694915e-02	coding only	1	28835288	...	76	258	354	2.635659e-06	8.947370e-06	1.227662e-05	-4.910921e+00	...	14	28779098	...	4.864642e-07
TCGA-91-A4BC-01A-11D-A24D-08	537	532	5	406	9.310987e-03	coding only	1	28835288	...	126	395	537	4.369646e-06	1.369849e-05	1.862301e-05	-4.729950e+00	...	11	28779098	...	3.822218e-07
TCGA-91-A4BD-01A-11D-A24D-08	25	24	1	17	4.000000e-02	coding only	1	28835288	...	7	15	25	2.427581e-07	5.201959e-07	8.669932e-07	-6.061984e+00	...	2	28779098	...	6.949488e-08
TCGA-93-7347-01A-11D-2184-08	145	143	2	112	1.379310e-02	coding only	1	28835288	...	31	105	144	1.075072e-06	3.641372e-06	4.993881e-06	-5.301562e+00	...	6	28779098	...	2.084846e-07
TCGA-93-7348-01A-21D-2036-08	126	124	2	102	1.587302e-02	coding only	1	28835288	...	22	100	126	7.629541e-07	3.467973e-06	4.369646e-06	-5.359554e+00	...	2	28779098	...	6.949488e-08
TCGA-93-8067-01A-11D-2284-08	612	603	9	444	1.470588e-02	coding only	1	28835288	...	159	435	611	5.514077e-06	1.508568e-05	2.118931e-05	-4.673883e+00	...	8	28779098	...	2.779795e-07
TCGA-93-A4JN-01A-11D-A24P-08	96	94	2	73	2.083333e-02	coding only	1	28835288	...	21	69	96	7.282743e-07	2.392901e-06	3.329254e-06	-5.477653e+00	...	4	28779098	...	1.389898e-07
TCGA-93-A4JO-01A-21D-A24P-08	64	63	1	51	1.562500e-02	coding only	1	28835288	...	12	48	64	4.161568e-07	1.664627e-06	2.219503e-06	-5.653744e+00	...	3	28779098	...	1.042423e-07
TCGA-93-A4JP-01A-11D-A24P-08	79	78	1	56	1.265823e-02	coding only	1	28835288	...	22	53	79	7.629541e-07	1.838026e-06	2.739699e-06	-5.562297e+00	...	3	28779098	...	1.042423e-07
TCGA-93-A4JQ-01A-11D-A24P-08	140	138	2	106	1.428571e-02	coding only	1	28835288	...	32	105	140	1.109751e-06	3.641372e-06	4.855162e-06	-5.313796e+00	...	1	28779098	...	3.474744e-08
TCGA-95-7039-01A-11D-1945-08	1453	1431	22	1115	1.514109e-02	coding only	1	28835288	...	316	1057	1452	1.095879e-05	3.665647e-05	5.035497e-05	-4.297958e+00	...	57	28779098	...	1.980604e-06
TCGA-95-7043-01A-11D-1945-08	1252	1232	20	968	1.597444e-02	coding only	1	28835288	...	264	912	1250	9.155449e-06	3.162791e-05	4.334966e-05	-4.363014e+00	...	54	28779098	...	1.876362e-06
TCGA-95-7562-01A-11D-2238-08	462	453	9	382	1.948052e-02	coding only	1	28835288	...	71	339	462	2.462261e-06	1.175643e-05	1.602204e-05	-4.795282e+00	...	43	28779098	...	1.494140e-06
TCGA-95-7567-01A-11D-2063-08	1089	1076	13	818	1.193756e-02	coding only	1	28835288	...	258	760	1089	8.947370e-06	2.635659e-05	3.776623e-05	-4.422896e+00	...	58	28779098	...	2.015352e-06
TCGA-95-7944-01A-11D-2184-08	302	298	4	217	1.324503e-02	coding only	1	28835288	...	81	207	302	2.809058e-06	7.178704e-06	1.047328e-05	-4.979917e+00	...	10	28779098	...	3.474744e-07
TCGA-95-7947-01A-11D-2184-08	609	599	10	455	1.642036e-02	coding only	1	28835288	...	144	442	609	4.993881e-06	1.532844e-05	2.111996e-05	-4.675307e+00	...	13	28779098	...	4.517167e-07
TCGA-95-7948-01A-11D-2184-08	180	178	2	147	1.111111e-02	coding only	1	28835288	...	31	141	180	1.075072e-06	4.889842e-06	6.242351e-06	-5.204652e+00	...	6	28779098	...	2.084846e-07
TCGA-95-8039-01A-11D-2238-08	125	124	1	97	8.000000e-03	coding only	1	28835288	...	27	88	125	9.363527e-07	3.051816e-06	4.334966e-06	-5.363014e+00	...	9	28779098	...	3.127270e-07
TCGA-95-8494-01A-11D-2323-08	126	124	2	86	1.587302e-02	coding only	1	28835288	...	38	84	126	1.317830e-06	2.913097e-06	4.369646e-06	-5.359554e+00	...	2	28779098	...	6.949488e-08
TCGA-95-A4VK-01A-11D-A25L-08	282	275	7	210	2.482270e-02	coding only	1	28835288	...	65	203	282	2.254182e-06	7.039985e-06	9.779684e-06	-5.009675e+00	...	7	28779098	...	2.432321e-07
TCGA-95-A4VN-01A-11D-A25L-08	554	540	14	418	2.527076e-02	coding only	1	28835288	...	121	403	552	4.196247e-06	1.397593e-05	1.914321e-05	-4.717985e+00	...	15	28779098	...	5.212116e-07
TCGA-95-A4VP-01A-21D-A25L-08	146	146	0	113	0	coding only	1	28835288	...	33	108	146	1.144431e-06	3.745411e-06	5.063241e-06	-5.295571e+00	...	5	28779098	...	1.737372e-07
TCGA-97-7546-01A-11D-2036-08	329	324	5	251	1.519757e-02	coding only	1	28835288	...	73	242	329	2.531620e-06	8.392495e-06	1.140963e-05	-4.942728e+00	...	8	28779098	...	2.779795e-07
TCGA-97-7547-01A-11D-2036-08	212	210	2	153	9.433962e-03	coding only	1	28835288	...	57	147	212	1.976745e-06	5.097920e-06	7.352103e-06	-5.133588e+00	...	6	28779098	...	2.084846e-07
TCGA-97-7552-01A-11D-2036-08	45	43	2	27	4.444444e-02	coding only	1	28835288	...	16	25	45	5.548757e-07	8.669932e-07	1.560588e-06	-5.806712e+00	...	2	28779098	...	6.949488e-08
TCGA-97-7553-01A-21D-2036-08	69	68	1	56	1.449275e-02	coding only	1	28835288	...	12	39	69	4.161568e-07	1.352509e-06	2.392901e-06	-5.621075e+00	...	17	28779098	...	5.907065e-07
TCGA-97-7554-01A-11D-2036-08	523	517	6	394	1.147228e-02	coding only	1	28835288	...	123	372	523	4.265607e-06	1.290086e-05	1.813750e-05	-4.741423e+00	...	22	28779098	...	7.644437e-07
TCGA-97-7937-01A-11D-2167-08	545	537	8	435	1.467890e-02	coding only	1	28835288	...	102	407	544	3.537332e-06	1.411465e-05	1.886577e-05	-4.724325e+00	...	27	28779098	...	9.381809e-07
TCGA-97-7938-01A-11D-2167-08	466	460	6	355	1.287554e-02	coding only	1	28835288	...	104	342	464	3.606692e-06	1.186047e-05	1.609139e-05	-4.793406e+00	...	12	28779098	...	4.169693e-07
TCGA-97-7941-01A-11D-2184-08	120	120	0	88	0	coding only	1	28835288	...	32	82	120	1.109751e-06	2.843738e-06	4.161568e-06	-5.380743e+00	...	6	28779098	...	2.084846e-07
TCGA-97-8171-01A-11D-2284-08	78	77	1	60	1.282051e-02	coding only	1	28835288	...	17	57	78	5.895554e-07	1.976745e-06	2.705019e-06	-5.567830e+00	...	3	28779098	...	1.042423e-07
TCGA-97-8172-01A-11D-2284-08	314	308	6	240	1.910828e-02	coding only	1	28835288	...	68	224	314	2.358222e-06	7.768260e-06	1.088944e-05	-4.962995e+00	...	16	28779098	...	5.559591e-07
TCGA-97-8174-01A-11D-2284-08	209	206	3	160	1.435407e-02	coding only	1	28835288	...	46	153	209	1.595268e-06	5.305999e-06	7.248064e-06	-5.139778e+00	...	7	28779098	...	2.432321e-07
TCGA-97-8175-01A-11D-2284-08	54	54	0	38	0	coding only	1	28835288	...	16	36	54	5.548757e-07	1.248470e-06	1.872705e-06	-5.727531e+00	...	2	28779098	...	6.949488e-08
TCGA-97-8176-01A-11D-2393-08	186	184	2	137	1.075269e-02	coding only	1	28835288	...	46	130	185	1.595268e-06	4.508365e-06	6.415750e-06	-5.192753e+00	...	7	28779098	...	2.432321e-07
TCGA-97-8177-01A-11D-2284-08	81	81	0	57	0	coding only	1	28835288	...	24	52	81	8.323135e-07	1.803346e-06	2.809058e-06	-5.551439e+00	...	5	28779098	...	1.737372e-07
TCGA-97-8179-01A-11D-2284-08	198	195	3	155	1.515152e-02	coding only	1	28835288	...	40	140	198	1.387189e-06	4.855162e-06	6.866587e-06	-5.163259e+00	...	15	28779098	...	5.212116e-07
TCGA-97-8547-01A-11D-2393-08	83	83	0	64	0	coding only	1	28835288	...	19	58	83	6.589149e-07	2.011424e-06	2.878418e-06	-5.540846e+00	...	6	28779098	...	2.084846e-07
TCGA-97-8552-01A-11D-2393-08	33	32	1	27	3.030303e-02	coding only	1	28835288	...	5	23	33	1.733986e-07	7.976338e-07	1.144431e-06	-5.941410e+00	...	4	28779098	...	1.389898e-07
TCGA-97-A4LX-01A-11D-A24P-08	207	206	1	155	4.830918e-03	coding only	1	28835288	...	51	150	207	1.768666e-06	5.201959e-06	7.178704e-06	-5.143954e+00	...	5	28779098	...	1.737372e-07
TCGA-97-A4M0-01A-11D-A24P-08	446	441	5	335	1.121076e-02	coding only	1	28835288	...	106	319	446	3.676051e-06	1.106283e-05	1.546716e-05	-4.810589e+00	...	16	28779098	...	5.559591e-07
TCGA-97-A4M1-01A-11D-A24P-08	55	54	1	43	1.818182e-02	coding only	1	28835288	...	11	39	55	3.814770e-07	1.352509e-06	1.907385e-06	-5.719562e+00	...	4	28779098	...	1.389898e-07
TCGA-97-A4M2-01A-12D-A24P-08	39	38	1	32	2.564103e-02	coding only	1	28835288	...	6	28	39	2.080784e-07	9.710324e-07	1.352509e-06	-5.868860e+00	...	4	28779098	...	1.389898e-07
TCGA-97-A4M3-01A-11D-A24P-08	230	226	4	187	1.739130e-02	coding only	1	28835288	...	39	181	230	1.352509e-06	6.277031e-06	7.976338e-06	-5.098196e+00	...	6	28779098	...	2.084846e-07
TCGA-97-A4M5-01A-11D-A24P-08	181	180	1	143	5.524862e-03	coding only	1	28835288	...	37	140	181	1.283150e-06	4.855162e-06	6.277031e-06	-5.202246e+00	...	3	28779098	...	1.042423e-07
TCGA-97-A4M6-01A-11D-A24P-08	42	42	0	30	0	coding only	1	28835288	...	12	25	42	4.161568e-07	8.669932e-07	1.456549e-06	-5.836675e+00	...	5	28779098	...	1.737372e-07
TCGA-97-A4M7-01A-11D-A24P-08	361	360	1	271	2.770083e-03	coding only	1	28835288	...	89	255	361	3.086496e-06	8.843331e-06	1.251938e-05	-4.902417e+00	...	16	28779098	...	5.559591e-07
TCGA-99-7458-01A-11D-2036-08	552	548	4	423	7.246377e-03	coding only	1	28835288	...	125	397	552	4.334966e-06	1.376785e-05	1.914321e-05	-4.717985e+00	...	26	28779098	...	9.034335e-07
TCGA-99-8025-01A-11D-2238-08	568	561	7	432	1.232394e-02	coding only	1	28835288	...	129	417	568	4.473685e-06	1.446145e-05	1.969809e-05	-4.705576e+00	...	14	28779098	...	4.864642e-07
TCGA-99-8028-01A-11D-2238-08	630	625	5	479	7.936508e-03	coding only	1	28835288	...	146	470	630	5.063241e-06	1.629947e-05	2.184823e-05	-4.660584e+00	...	9	28779098	...	3.127270e-07
TCGA-99-8032-01A-11D-2238-08	507	503	4	392	7.889546e-03	coding only	1	28835288	...	111	370	507	3.849450e-06	1.283150e-05	1.758262e-05	-4.754916e+00	...	22	28779098	...	7.644437e-07
TCGA-99-8033-01A-11D-2238-08	222	220	2	170	9.009009e-03	coding only	1	28835288	...	50	161	222	1.733986e-06	5.583437e-06	7.698900e-06	-5.113571e+00	...	9	28779098	...	3.127270e-07
TCGA-J2-8192-01A-11D-2238-08	96	91	5	73	5.208333e-02	coding only	1	28835288	...	18	66	95	6.242351e-07	2.288862e-06	3.294574e-06	-5.482201e+00	...	6	28779098	...	2.084846e-07
TCGA-J2-8194-01A-11D-2238-08	195	192	3	146	1.538462e-02	coding only	1	28835288	...	46	140	195	1.595268e-06	4.855162e-06	6.762547e-06	-5.169890e+00	...	6	28779098	...	2.084846e-07
TCGA-J2-A4AD-01A-11D-A24D-08	385	378	7	286	1.818182e-02	coding only	1	28835288	...	92	275	385	3.190535e-06	9.536926e-06	1.335170e-05	-4.874464e+00	...	11	28779098	...	3.822218e-07
TCGA-J2-A4AE-01A-21D-A24D-08	63	61	2	43	3.174603e-02	coding only	1	28835288	...	18	41	63	6.242351e-07	1.421869e-06	2.184823e-06	-5.660584e+00	...	2	28779098	...	6.949488e-08
TCGA-J2-A4AG-01A-11D-A24D-08	111	111	0	82	0	coding only	1	28835288	...	29	75	110	1.005712e-06	2.600980e-06	3.814770e-06	-5.418532e+00	...	6	28779098	...	2.084846e-07
TCGA-L4-A4E5-01A-11D-A24P-08	378	375	3	286	7.936508e-03	coding only	1	28835288	...	89	279	378	3.086496e-06	9.675645e-06	1.310894e-05	-4.882432e+00	...	7	28779098	...	2.432321e-07
TCGA-L4-A4E6-01A-11D-A24D-08	21	21	0	11	0	coding only	1	28835288	...	10	9	21	3.467973e-07	3.121176e-07	7.282743e-07	-6.137705e+00	...	2	28779098	...	6.949488e-08
TCGA-L9-A443-01A-12D-A24D-08	282	278	4	230	1.418440e-02	coding only	1	28835288	...	48	221	282	1.664627e-06	7.664220e-06	9.779684e-06	-5.009675e+00	...	9	28779098	...	3.127270e-07
TCGA-L9-A444-01A-21D-A24D-08	650	640	10	483	1.538462e-02	coding only	1	28835288	...	157	461	650	5.444718e-06	1.598736e-05	2.254182e-05	-4.647011e+00	...	22	28779098	...	7.644437e-07
TCGA-MN-A4N1-01A-11D-A24P-08	522	517	5	400	9.578544e-03	coding only	1	28835288	...	117	385	522	4.057528e-06	1.335170e-05	1.810282e-05	-4.742254e+00	...	15	28779098	...	5.212116e-07
TCGA-MN-A4N4-01A-12D-A24P-08	1732	1707	25	1331	1.443418e-02	coding only	1	28835288	...	376	1289	1731	1.303958e-05	4.470217e-05	6.003061e-05	-4.221627e+00	...	41	28779098	...	1.424645e-06
TCGA-MN-A4N5-01A-11D-A24P-08	500	492	8	387	1.600000e-02	coding only	1	28835288	...	105	373	500	3.641372e-06	1.293554e-05	1.733986e-05	-4.760954e+00	...	14	28779098	...	4.864642e-07
TCGA-MP-A4SV-01A-11D-A24P-08	404	393	11	300	2.722772e-02	coding only	1	28835288	...	93	288	404	3.225215e-06	9.987762e-06	1.401061e-05	-4.853543e+00	...	12	28779098	...	4.169693e-07
TCGA-MP-A4SW-01A-21D-A24P-08	86	84	2	59	2.325581e-02	coding only	1	28835288	...	25	54	86	8.669932e-07	1.872705e-06	2.982457e-06	-5.525426e+00	...	5	28779098	...	1.737372e-07
TCGA-MP-A4SY-01A-21D-A24P-08	188	185	3	154	1.595745e-02	coding only	1	28835288	...	31	152	188	1.075072e-06	5.271319e-06	6.519789e-06	-5.185766e+00	...	2	28779098	...	6.949488e-08
TCGA-MP-A4T2-01A-11D-A24P-08	88	87	1	67	1.136364e-02	coding only	1	28835288	...	20	65	88	6.935946e-07	2.254182e-06	3.051816e-06	-5.515442e+00	...	2	28779098	...	6.949488e-08
TCGA-MP-A4T4-01A-11D-A25L-08	462	453	9	355	1.948052e-02	coding only	1	28835288	...	98	340	462	3.398614e-06	1.179111e-05	1.602204e-05	-4.795282e+00	...	14	28779098	...	4.864642e-07
TCGA-MP-A4T6-01A-32D-A25L-08	89	87	2	62	2.247191e-02	coding only	1	28835288	...	25	60	89	8.669932e-07	2.080784e-06	3.086496e-06	-5.510534e+00	...	2	28779098	...	6.949488e-08
TCGA-MP-A4T7-01A-11D-A24P-08	153	151	2	125	1.307190e-02	coding only	1	28835288	...	26	121	153	9.016730e-07	4.196247e-06	5.305999e-06	-5.275233e+00	...	4	28779098	...	1.389898e-07
TCGA-MP-A4T8-01A-11D-A24P-08	133	131	2	105	1.503759e-02	coding only	1	28835288	...	26	97	133	9.016730e-07	3.363934e-06	4.612404e-06	-5.336073e+00	...	8	28779098	...	2.779795e-07
TCGA-MP-A4T9-01A-11D-A24P-08	46	45	1	32	2.173913e-02	coding only	1	28835288	...	13	30	46	4.508365e-07	1.040392e-06	1.595268e-06	-5.797166e+00	...	2	28779098	...	6.949488e-08
TCGA-MP-A4TA-01A-21D-A24P-08	416	411	5	309	1.201923e-02	coding only	1	28835288	...	102	296	416	3.537332e-06	1.026520e-05	1.442677e-05	-4.840831e+00	...	13	28779098	...	4.517167e-07
TCGA-MP-A4TC-01A-11D-A24P-08	292	289	3	220	1.027397e-02	coding only	1	28835288	...	69	210	292	2.392901e-06	7.282743e-06	1.012648e-05	-4.994541e+00	...	10	28779098	...	3.474744e-07
TCGA-MP-A4TD-01A-32D-A25L-08	98	96	2	70	2.040816e-02	coding only	1	28835288	...	26	64	98	9.016730e-07	2.219503e-06	3.398614e-06	-5.468698e+00	...	6	28779098	...	2.084846e-07
TCGA-MP-A4TE-01A-22D-A25L-08	160	157	3	124	1.875000e-02	coding only	1	28835288	...	33	116	160	1.144431e-06	4.022849e-06	5.548757e-06	-5.255804e+00	...	8	28779098	...	2.779795e-07
TCGA-MP-A4TF-01A-11D-A25L-08	491	488	3	371	6.109980e-03	coding only	1	28835288	...	117	357	491	4.057528e-06	1.238066e-05	1.702775e-05	-4.768843e+00	...	14	28779098	...	4.864642e-07
TCGA-MP-A4TH-01A-31D-A25L-08	132	131	1	107	7.575758e-03	coding only	1	28835288	...	24	101	132	8.323135e-07	3.502653e-06	4.577724e-06	-5.339350e+00	...	6	28779098	...	2.084846e-07
TCGA-MP-A4TI-01A-21D-A24P-08	294	286	8	199	2.721088e-02	coding only	1	28835288	...	87	196	294	3.017137e-06	6.797227e-06	1.019584e-05	-4.991577e+00	...	3	28779098	...	1.042423e-07
TCGA-MP-A4TK-01A-11D-A24P-08	406	402	4	311	9.852217e-03	coding only	1	28835288	...	91	299	406	3.155855e-06	1.036924e-05	1.407997e-05	-4.851398e+00	...	12	28779098	...	4.169693e-07
TCGA-MP-A5C7-01A-11D-A25L-08	88	88	0	56	0	coding only	1	28835288	...	32	51	88	1.109751e-06	1.768666e-06	3.051816e-06	-5.515442e+00	...	5	28779098	...	1.737372e-07
TCGA-NJ-A4YF-01A-12D-A25L-08	683	677	6	529	8.784773e-03	coding only	1	28835288	...	148	505	682	5.132600e-06	1.751326e-05	2.365158e-05	-4.626140e+00	...	22	28779098	...	7.644437e-07
TCGA-NJ-A4YG-01A-22D-A25L-08	170	168	2	130	1.176471e-02	coding only	1	28835288	...	38	126	170	1.317830e-06	4.369646e-06	5.895554e-06	-5.229475e+00	...	4	28779098	...	1.389898e-07
TCGA-NJ-A4YI-01A-11D-A25L-08	508	505	3	384	5.905512e-03	coding only	1	28835288	...	121	363	508	4.196247e-06	1.258874e-05	1.761730e-05	-4.754061e+00	...	21	28779098	...	7.296963e-07
TCGA-NJ-A4YP-01A-11D-A25L-08	633	625	8	463	1.263823e-02	coding only	1	28835288	...	162	452	633	5.618116e-06	1.567524e-05	2.195227e-05	-4.658521e+00	...	9	28779098	...	3.127270e-07
TCGA-NJ-A4YQ-01A-11D-A25L-08	1295	1272	23	985	1.776062e-02	coding only	1	28835288	...	287	944	1295	9.953082e-06	3.273767e-05	4.491025e-05	-4.347655e+00	...	41	28779098	...	1.424645e-06
TCGA-NJ-A55A-01A-11D-A25L-08	144	139	5	104	3.472222e-02	exome+100bp flanks	2	35742242	...	35	101	144	9.792335e-07	2.825788e-06	4.028846e-06	-5.394819e+00	...	3	32033033	...	9.365332e-08
TCGA-NJ-A55O-01A-11D-A25L-08	165	164	1	129	6.060606e-03	coding only	1	28835288	...	35	123	165	1.213791e-06	4.265607e-06	5.722155e-06	-5.242440e+00	...	6	28779098	...	2.084846e-07
TCGA-NJ-A55R-01A-11D-A25L-08	305	303	2	224	6.557377e-03	coding only	1	28835288	...	79	214	305	2.739699e-06	7.421462e-06	1.057732e-05	-4.975624e+00	...	10	28779098	...	3.474744e-07
TCGA-O1-A52J-01A-11D-A25L-08	202	200	2	151	9.900990e-03	coding only	1	28835288	...	49	143	202	1.699307e-06	4.959201e-06	7.005305e-06	-5.154573e+00	...	8	28779098	...	2.779795e-07
