[1] "ofn"        "-oTLUSC-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/LUSC-TP/22552638/LUSC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LUSC-TP/22533935/transformed.cor.cli.txt"

nPatients in clinical file=504, in cluster file=501, common to both=501
[1]  83 501
[1] "AMP PEAK  1(1Q21.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE 
                          258                           243 
  AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE 
                          258                           243 
[1] "AMP PEAK  2(2P16.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(2P16.1) MUTATED AMP PEAK  2(2P16.1) WILD-TYPE 
                          275                           226 
  AMP PEAK  2(2P16.1) MUTATED AMP PEAK  2(2P16.1) WILD-TYPE 
                          275                           226 
[1] "AMP PEAK  3(2Q31.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(2Q31.2) MUTATED AMP PEAK  3(2Q31.2) WILD-TYPE 
                          172                           329 
  AMP PEAK  3(2Q31.2) MUTATED AMP PEAK  3(2Q31.2) WILD-TYPE 
                          172                           329 
[1] "AMP PEAK  4(3Q26.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE 
                           452                             49 
  AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE 
                           452                             49 
[1] "AMP PEAK  5(4Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                        119                         382 
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                        119                         382 
[1] "AMP PEAK  6(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE 
                           387                            114 
  AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE 
                           387                            114 
[1] "AMP PEAK  7(5P12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(5P12) MUTATED AMP PEAK  7(5P12) WILD-TYPE 
                        354                         147 
  AMP PEAK  7(5P12) MUTATED AMP PEAK  7(5P12) WILD-TYPE 
                        354                         147 
[1] "AMP PEAK  8(6P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(6P12.1) MUTATED AMP PEAK  8(6P12.1) WILD-TYPE 
                          166                           335 
  AMP PEAK  8(6P12.1) MUTATED AMP PEAK  8(6P12.1) WILD-TYPE 
                          166                           335 
[1] "AMP PEAK  9(6Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE 
                        152                         349 
  AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE 
                        152                         349 
[1] "AMP PEAK 10(7P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE 
                          256                           245 
  AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE 
                          256                           245 
[1] "AMP PEAK 11(7Q21.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(7Q21.2) MUTATED AMP PEAK 11(7Q21.2) WILD-TYPE 
                          264                           237 
  AMP PEAK 11(7Q21.2) MUTATED AMP PEAK 11(7Q21.2) WILD-TYPE 
                          264                           237 
[1] "AMP PEAK 12(8P11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(8P11.23) MUTATED AMP PEAK 12(8P11.23) WILD-TYPE 
                           238                            263 
  AMP PEAK 12(8P11.23) MUTATED AMP PEAK 12(8P11.23) WILD-TYPE 
                           238                            263 
[1] "AMP PEAK 13(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE 
                           352                            149 
  AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE 
                           352                            149 
[1] "AMP PEAK 14(9P13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(9P13.3) MUTATED AMP PEAK 14(9P13.3) WILD-TYPE 
                          136                           365 
  AMP PEAK 14(9P13.3) MUTATED AMP PEAK 14(9P13.3) WILD-TYPE 
                          136                           365 
[1] "AMP PEAK 15(11Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE 
                           185                            316 
  AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE 
                           185                            316 
[1] "AMP PEAK 16(12P13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(12P13.33) MUTATED AMP PEAK 16(12P13.33) WILD-TYPE 
                            255                             246 
  AMP PEAK 16(12P13.33) MUTATED AMP PEAK 16(12P13.33) WILD-TYPE 
                            255                             246 
[1] "AMP PEAK 17(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE 
                         178                          323 
  AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE 
                         178                          323 
[1] "AMP PEAK 18(13Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE 
                          91                          410 
  AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE 
                          91                          410 
[1] "AMP PEAK 19(14Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(14Q13.3) MUTATED AMP PEAK 19(14Q13.3) WILD-TYPE 
                           159                            342 
  AMP PEAK 19(14Q13.3) MUTATED AMP PEAK 19(14Q13.3) WILD-TYPE 
                           159                            342 
[1] "AMP PEAK 20(14Q32.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(14Q32.33) MUTATED AMP PEAK 20(14Q32.33) WILD-TYPE 
                            158                             343 
  AMP PEAK 20(14Q32.33) MUTATED AMP PEAK 20(14Q32.33) WILD-TYPE 
                            158                             343 
[1] "AMP PEAK 21(15Q26.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE 
                           179                            322 
  AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE 
                           179                            322 
[1] "AMP PEAK 22(17Q25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(17Q25.1) MUTATED AMP PEAK 22(17Q25.1) WILD-TYPE 
                           236                            265 
  AMP PEAK 22(17Q25.1) MUTATED AMP PEAK 22(17Q25.1) WILD-TYPE 
                           236                            265 
[1] "AMP PEAK 23(18P11.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(18P11.32) MUTATED AMP PEAK 23(18P11.32) WILD-TYPE 
                            179                             322 
  AMP PEAK 23(18P11.32) MUTATED AMP PEAK 23(18P11.32) WILD-TYPE 
                            179                             322 
[1] "AMP PEAK 24(18Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE 
                           151                            350 
  AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE 
                           151                            350 
[1] "AMP PEAK 25(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE 
                         225                          276 
  AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE 
                         225                          276 
[1] "AMP PEAK 26(19Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(19Q13.2) MUTATED AMP PEAK 26(19Q13.2) WILD-TYPE 
                           234                            267 
  AMP PEAK 26(19Q13.2) MUTATED AMP PEAK 26(19Q13.2) WILD-TYPE 
                           234                            267 
[1] "AMP PEAK 27(20P12.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(20P12.2) MUTATED AMP PEAK 27(20P12.2) WILD-TYPE 
                           280                            221 
  AMP PEAK 27(20P12.2) MUTATED AMP PEAK 27(20P12.2) WILD-TYPE 
                           280                            221 
[1] "AMP PEAK 28(20Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 28(20Q11.21) MUTATED AMP PEAK 28(20Q11.21) WILD-TYPE 
                            306                             195 
  AMP PEAK 28(20Q11.21) MUTATED AMP PEAK 28(20Q11.21) WILD-TYPE 
                            306                             195 
[1] "AMP PEAK 29(22Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 29(22Q11.21) MUTATED AMP PEAK 29(22Q11.21) WILD-TYPE 
                            256                             245 
  AMP PEAK 29(22Q11.21) MUTATED AMP PEAK 29(22Q11.21) WILD-TYPE 
                            256                             245 
[1] "AMP PEAK 30(XQ28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 30(XQ28) MUTATED AMP PEAK 30(XQ28) WILD-TYPE 
                        124                         377 
  AMP PEAK 30(XQ28) MUTATED AMP PEAK 30(XQ28) WILD-TYPE 
                        124                         377 
[1] "DEL PEAK  1(1P36.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                           228                            273 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                           228                            273 
[1] "DEL PEAK  2(1P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE 
                          221                           280 
  DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE 
                          221                           280 
[1] "DEL PEAK  3(2P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                           50                           451 
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                           50                           451 
[1] "DEL PEAK  4(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE 
                          131                           370 
  DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE 
                          131                           370 
[1] "DEL PEAK  5(2Q37.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(2Q37.1) MUTATED DEL PEAK  5(2Q37.1) WILD-TYPE 
                          159                           342 
  DEL PEAK  5(2Q37.1) MUTATED DEL PEAK  5(2Q37.1) WILD-TYPE 
                          159                           342 
[1] "DEL PEAK  6(3P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3P25.3) MUTATED DEL PEAK  6(3P25.3) WILD-TYPE 
                          398                           103 
  DEL PEAK  6(3P25.3) MUTATED DEL PEAK  6(3P25.3) WILD-TYPE 
                          398                           103 
[1] "DEL PEAK  7(3P13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE 
                        434                          67 
  DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE 
                        434                          67 
[1] "DEL PEAK  8(3P12.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(3P12.3) MUTATED DEL PEAK  8(3P12.3) WILD-TYPE 
                          427                            74 
  DEL PEAK  8(3P12.3) MUTATED DEL PEAK  8(3P12.3) WILD-TYPE 
                          427                            74 
[1] "DEL PEAK  9(3P12.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(3P12.3) MUTATED DEL PEAK  9(3P12.3) WILD-TYPE 
                          421                            80 
  DEL PEAK  9(3P12.3) MUTATED DEL PEAK  9(3P12.3) WILD-TYPE 
                          421                            80 
[1] "DEL PEAK 10(3Q11.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(3Q11.1) MUTATED DEL PEAK 10(3Q11.1) WILD-TYPE 
                           79                           422 
  DEL PEAK 10(3Q11.1) MUTATED DEL PEAK 10(3Q11.1) WILD-TYPE 
                           79                           422 
[1] "DEL PEAK 11(4P15.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE 
                          316                           185 
  DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE 
                          316                           185 
[1] "DEL PEAK 12(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE 
                          285                           216 
  DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE 
                          285                           216 
[1] "DEL PEAK 13(4Q32.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(4Q32.3) MUTATED DEL PEAK 13(4Q32.3) WILD-TYPE 
                          329                           172 
  DEL PEAK 13(4Q32.3) MUTATED DEL PEAK 13(4Q32.3) WILD-TYPE 
                          329                           172 
[1] "DEL PEAK 14(4Q35.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(4Q35.2) MUTATED DEL PEAK 14(4Q35.2) WILD-TYPE 
                          331                           170 
  DEL PEAK 14(4Q35.2) MUTATED DEL PEAK 14(4Q35.2) WILD-TYPE 
                          331                           170 
[1] "DEL PEAK 15(5Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(5Q12.1) MUTATED DEL PEAK 15(5Q12.1) WILD-TYPE 
                          369                           132 
  DEL PEAK 15(5Q12.1) MUTATED DEL PEAK 15(5Q12.1) WILD-TYPE 
                          369                           132 
[1] "DEL PEAK 16(5Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(5Q31.1) MUTATED DEL PEAK 16(5Q31.1) WILD-TYPE 
                          386                           115 
  DEL PEAK 16(5Q31.1) MUTATED DEL PEAK 16(5Q31.1) WILD-TYPE 
                          386                           115 
[1] "DEL PEAK 17(6P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(6P25.3) MUTATED DEL PEAK 17(6P25.3) WILD-TYPE 
                          134                           367 
  DEL PEAK 17(6P25.3) MUTATED DEL PEAK 17(6P25.3) WILD-TYPE 
                          134                           367 
[1] "DEL PEAK 18(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(6Q26) MUTATED DEL PEAK 18(6Q26) WILD-TYPE 
                        135                         366 
  DEL PEAK 18(6Q26) MUTATED DEL PEAK 18(6Q26) WILD-TYPE 
                        135                         366 
[1] "DEL PEAK 19(7Q11.22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(7Q11.22) MUTATED DEL PEAK 19(7Q11.22) WILD-TYPE 
                            48                            453 
  DEL PEAK 19(7Q11.22) MUTATED DEL PEAK 19(7Q11.22) WILD-TYPE 
                            48                            453 
[1] "DEL PEAK 20(7Q36.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(7Q36.3) MUTATED DEL PEAK 20(7Q36.3) WILD-TYPE 
                          104                           397 
  DEL PEAK 20(7Q36.3) MUTATED DEL PEAK 20(7Q36.3) WILD-TYPE 
                          104                           397 
[1] "DEL PEAK 21(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(8P23.2) MUTATED DEL PEAK 21(8P23.2) WILD-TYPE 
                          341                           160 
  DEL PEAK 21(8P23.2) MUTATED DEL PEAK 21(8P23.2) WILD-TYPE 
                          341                           160 
[1] "DEL PEAK 22(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE 
                        332                         169 
  DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE 
                        332                         169 
[1] "DEL PEAK 23(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE 
                          388                           113 
  DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE 
                          388                           113 
[1] "DEL PEAK 24(9P21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(9P21.1) MUTATED DEL PEAK 24(9P21.1) WILD-TYPE 
                          326                           175 
  DEL PEAK 24(9P21.1) MUTATED DEL PEAK 24(9P21.1) WILD-TYPE 
                          326                           175 
[1] "DEL PEAK 25(9Q21.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE 
                           251                            250 
  DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE 
                           251                            250 
[1] "DEL PEAK 26(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE 
                           228                            273 
  DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE 
                           228                            273 
[1] "DEL PEAK 27(10P15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(10P15.1) MUTATED DEL PEAK 27(10P15.1) WILD-TYPE 
                           211                            290 
  DEL PEAK 27(10P15.1) MUTATED DEL PEAK 27(10P15.1) WILD-TYPE 
                           211                            290 
[1] "DEL PEAK 28(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE 
                            268                             233 
  DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE 
                            268                             233 
[1] "DEL PEAK 29(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE 
                           245                            256 
  DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE 
                           245                            256 
[1] "DEL PEAK 30(11Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(11Q22.1) MUTATED DEL PEAK 30(11Q22.1) WILD-TYPE 
                           163                            338 
  DEL PEAK 30(11Q22.1) MUTATED DEL PEAK 30(11Q22.1) WILD-TYPE 
                           163                            338 
[1] "DEL PEAK 31(11Q25) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(11Q25) MUTATED DEL PEAK 31(11Q25) WILD-TYPE 
                         184                          317 
  DEL PEAK 31(11Q25) MUTATED DEL PEAK 31(11Q25) WILD-TYPE 
                         184                          317 
[1] "DEL PEAK 32(12Q24.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(12Q24.31) MUTATED DEL PEAK 32(12Q24.31) WILD-TYPE 
                             86                             415 
  DEL PEAK 32(12Q24.31) MUTATED DEL PEAK 32(12Q24.31) WILD-TYPE 
                             86                             415 
[1] "DEL PEAK 33(13Q12.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE 
                            331                             170 
  DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE 
                            331                             170 
[1] "DEL PEAK 34(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(13Q14.2) MUTATED DEL PEAK 34(13Q14.2) WILD-TYPE 
                           344                            157 
  DEL PEAK 34(13Q14.2) MUTATED DEL PEAK 34(13Q14.2) WILD-TYPE 
                           344                            157 
[1] "DEL PEAK 35(14Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(14Q11.2) MUTATED DEL PEAK 35(14Q11.2) WILD-TYPE 
                           175                            326 
  DEL PEAK 35(14Q11.2) MUTATED DEL PEAK 35(14Q11.2) WILD-TYPE 
                           175                            326 
[1] "DEL PEAK 36(15Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE 
                           167                            334 
  DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE 
                           167                            334 
[1] "DEL PEAK 37(15Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(15Q21.1) MUTATED DEL PEAK 37(15Q21.1) WILD-TYPE 
                           169                            332 
  DEL PEAK 37(15Q21.1) MUTATED DEL PEAK 37(15Q21.1) WILD-TYPE 
                           169                            332 
[1] "DEL PEAK 38(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE 
                           187                            314 
  DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE 
                           187                            314 
[1] "DEL PEAK 39(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE 
                           210                            291 
  DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE 
                           210                            291 
[1] "DEL PEAK 40(17P11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE 
                           272                            229 
  DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE 
                           272                            229 
[1] "DEL PEAK 41(17Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE 
                           132                            369 
  DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE 
                           132                            369 
[1] "DEL PEAK 42(17Q25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 42(17Q25.3) MUTATED DEL PEAK 42(17Q25.3) WILD-TYPE 
                           102                            399 
  DEL PEAK 42(17Q25.3) MUTATED DEL PEAK 42(17Q25.3) WILD-TYPE 
                           102                            399 
[1] "DEL PEAK 43(18Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE 
                         234                          267 
  DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE 
                         234                          267 
[1] "DEL PEAK 44(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE 
                           236                            265 
  DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE 
                           236                            265 
[1] "DEL PEAK 45(19Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 45(19Q13.32) MUTATED DEL PEAK 45(19Q13.32) WILD-TYPE 
                            149                             352 
  DEL PEAK 45(19Q13.32) MUTATED DEL PEAK 45(19Q13.32) WILD-TYPE 
                            149                             352 
[1] "DEL PEAK 46(21Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE 
                           244                            257 
  DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE 
                           244                            257 
[1] "DEL PEAK 47(21Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 47(21Q22.3) MUTATED DEL PEAK 47(21Q22.3) WILD-TYPE 
                           281                            220 
  DEL PEAK 47(21Q22.3) MUTATED DEL PEAK 47(21Q22.3) WILD-TYPE 
                           281                            220 
[1] "DEL PEAK 48(22Q11.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 48(22Q11.21) MUTATED DEL PEAK 48(22Q11.21) WILD-TYPE 
                             95                             406 
  DEL PEAK 48(22Q11.21) MUTATED DEL PEAK 48(22Q11.21) WILD-TYPE 
                             95                             406 
[1] "DEL PEAK 49(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 49(22Q13.32) MUTATED DEL PEAK 49(22Q13.32) WILD-TYPE 
                            127                             374 
  DEL PEAK 49(22Q13.32) MUTATED DEL PEAK 49(22Q13.32) WILD-TYPE 
                            127                             374 
[1] "DEL PEAK 50(XP22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 50(XP22.2) MUTATED DEL PEAK 50(XP22.2) WILD-TYPE 
                          155                           346 
  DEL PEAK 50(XP22.2) MUTATED DEL PEAK 50(XP22.2) WILD-TYPE 
                          155                           346 
[1] "DEL PEAK 51(XP21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE 
                          151                           350 
  DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE 
                          151                           350 
[1] "DEL PEAK 52(XP11.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 52(XP11.3) MUTATED DEL PEAK 52(XP11.3) WILD-TYPE 
                          149                           352 
  DEL PEAK 52(XP11.3) MUTATED DEL PEAK 52(XP11.3) WILD-TYPE 
                          149                           352 
[1] "DEL PEAK 53(XQ22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 53(XQ22.3) MUTATED DEL PEAK 53(XQ22.3) WILD-TYPE 
                          114                           387 
  DEL PEAK 53(XQ22.3) MUTATED DEL PEAK 53(XQ22.3) WILD-TYPE 
                          114                           387 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 501 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 501 columns, 0 survival variables, and 12 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=6, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1Q21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q21.2) MUTATED       18     36     17     16
  AMP PEAK  1(1Q21.2) WILD-TYPE     23     14     17     13
D1V1, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          18                            23
  CLUS_2                          36                            14
  CLUS_3                          17                            17
  CLUS_4                          16                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.2) MUTATED       23     38     26
  AMP PEAK  1(1Q21.2) WILD-TYPE     24     18     25
D1V2, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          23                            24
  CLUS_2                          38                            18
  CLUS_3                          26                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q21.2) MUTATED       21     43     11     29    120     34
  AMP PEAK  1(1Q21.2) WILD-TYPE     22     72     18     58     49     24
D1V3, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          21                            22
  CLUS_2                          43                            72
  CLUS_3                          11                            18
  CLUS_4                          29                            58
  CLUS_5                         120                            49
  CLUS_6                          34                            24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q21.2) MUTATED       40     55     43     46
  AMP PEAK  1(1Q21.2) WILD-TYPE     50     40     14     79
D1V4, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          40                            50
  CLUS_2                          55                            40
  CLUS_3                          43                            14
  CLUS_4                          46                            79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q21.2) MUTATED       51     55     56      9
  AMP PEAK  1(1Q21.2) WILD-TYPE     54     54     30     17
D1V5, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          51                            54
  CLUS_2                          55                            54
  CLUS_3                          56                            30
  CLUS_4                           9                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q21.2) MUTATED       48     39     31     28     13     12
  AMP PEAK  1(1Q21.2) WILD-TYPE     31     28     31     32     17     16
D1V6, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          48                            31
  CLUS_2                          39                            28
  CLUS_3                          31                            31
  CLUS_4                          28                            32
  CLUS_5                          13                            17
  CLUS_6                          12                            16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q21.2) MUTATED       41    104     83     29
  AMP PEAK  1(1Q21.2) WILD-TYPE     65     46     76     54
D1V7, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          41                            65
  CLUS_2                         104                            46
  CLUS_3                          83                            76
  CLUS_4                          29                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.2) MUTATED       63    123     71
  AMP PEAK  1(1Q21.2) WILD-TYPE    115     66     60
D1V8, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          63                           115
  CLUS_2                         123                            66
  CLUS_3                          71                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q21.2) MUTATED      109     38     43     54
  AMP PEAK  1(1Q21.2) WILD-TYPE     75     49     81     26
D1V9, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                         109                            75
  CLUS_2                          38                            49
  CLUS_3                          43                            81
  CLUS_4                          54                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q21.2) MUTATED       64     67     89     24
  AMP PEAK  1(1Q21.2) WILD-TYPE     25     51    110     45
D1V10, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          64                            25
  CLUS_2                          67                            51
  CLUS_3                          89                           110
  CLUS_4                          24                            45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q21.2) MUTATED       23     65     22     56
  AMP PEAK  1(1Q21.2) WILD-TYPE     38     50     44     36
D1V11, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          23                            38
  CLUS_2                          65                            50
  CLUS_3                          22                            44
  CLUS_4                          56                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.2) MUTATED       14    107     45
  AMP PEAK  1(1Q21.2) WILD-TYPE     23     81     64
D1V12, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          14                            23
  CLUS_2                         107                            81
  CLUS_3                          45                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(2P16.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2P16.1) MUTATED       17     39     16     13
  AMP PEAK  2(2P16.1) WILD-TYPE     24     11     18     16
D2V1, multiclass
        clus
vv       AMP PEAK  2(2P16.1) MUTATED AMP PEAK  2(2P16.1) WILD-TYPE
  CLUS_1                          17                            24
  CLUS_2                          39                            11
  CLUS_3                          16                            18
  CLUS_4                          13                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2P16.1) MUTATED       24     42     19
  AMP PEAK  2(2P16.1) WILD-TYPE     23     14     32
D2V2, multiclass
        clus
vv       AMP PEAK  2(2P16.1) MUTATED AMP PEAK  2(2P16.1) WILD-TYPE
  CLUS_1                          24                            23
  CLUS_2                          42                            14
  CLUS_3                          19                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(2P16.1) MUTATED       18     38     18     28    126     47
  AMP PEAK  2(2P16.1) WILD-TYPE     25     77     11     59     43     11
D2V3, multiclass
        clus
vv       AMP PEAK  2(2P16.1) MUTATED AMP PEAK  2(2P16.1) WILD-TYPE
  CLUS_1                          18                            25
  CLUS_2                          38                            77
  CLUS_3                          18                            11
  CLUS_4                          28                            59
  CLUS_5                         126                            43
  CLUS_6                          47                            11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2P16.1) MUTATED       40     71     41     52
  AMP PEAK  2(2P16.1) WILD-TYPE     50     24     16     73
D2V4, multiclass
        clus
vv       AMP PEAK  2(2P16.1) MUTATED AMP PEAK  2(2P16.1) WILD-TYPE
  CLUS_1                          40                            50
  CLUS_2                          71                            24
  CLUS_3                          41                            16
  CLUS_4                          52                            73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2P16.1) MUTATED       52     56     61     12
  AMP PEAK  2(2P16.1) WILD-TYPE     53     53     25     14
D2V5, multiclass
        clus
vv       AMP PEAK  2(2P16.1) MUTATED AMP PEAK  2(2P16.1) WILD-TYPE
  CLUS_1                          52                            53
  CLUS_2                          56                            53
  CLUS_3                          61                            25
  CLUS_4                          12                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(2P16.1) MUTATED       40     47     33     33     14     14
  AMP PEAK  2(2P16.1) WILD-TYPE     39     20     29     27     16     14
D2V6, multiclass
        clus
vv       AMP PEAK  2(2P16.1) MUTATED AMP PEAK  2(2P16.1) WILD-TYPE
  CLUS_1                          40                            39
  CLUS_2                          47                            20
  CLUS_3                          33                            29
  CLUS_4                          33                            27
  CLUS_5                          14                            16
  CLUS_6                          14                            14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2P16.1) MUTATED       42    112     92     27
  AMP PEAK  2(2P16.1) WILD-TYPE     64     38     67     56
D2V7, multiclass
        clus
vv       AMP PEAK  2(2P16.1) MUTATED AMP PEAK  2(2P16.1) WILD-TYPE
  CLUS_1                          42                            64
  CLUS_2                         112                            38
  CLUS_3                          92                            67
  CLUS_4                          27                            56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2P16.1) MUTATED       82    131     60
  AMP PEAK  2(2P16.1) WILD-TYPE     96     58     71
D2V8, multiclass
        clus
vv       AMP PEAK  2(2P16.1) MUTATED AMP PEAK  2(2P16.1) WILD-TYPE
  CLUS_1                          82                            96
  CLUS_2                         131                            58
  CLUS_3                          60                            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2P16.1) MUTATED      107     61     47     48
  AMP PEAK  2(2P16.1) WILD-TYPE     77     26     77     32
D2V9, multiclass
        clus
vv       AMP PEAK  2(2P16.1) MUTATED AMP PEAK  2(2P16.1) WILD-TYPE
  CLUS_1                         107                            77
  CLUS_2                          61                            26
  CLUS_3                          47                            77
  CLUS_4                          48                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2P16.1) MUTATED       54     64    122     23
  AMP PEAK  2(2P16.1) WILD-TYPE     35     54     77     46
D2V10, multiclass
        clus
vv       AMP PEAK  2(2P16.1) MUTATED AMP PEAK  2(2P16.1) WILD-TYPE
  CLUS_1                          54                            35
  CLUS_2                          64                            54
  CLUS_3                         122                            77
  CLUS_4                          23                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2P16.1) MUTATED       33     71     22     60
  AMP PEAK  2(2P16.1) WILD-TYPE     28     44     44     32
D2V11, multiclass
        clus
vv       AMP PEAK  2(2P16.1) MUTATED AMP PEAK  2(2P16.1) WILD-TYPE
  CLUS_1                          33                            28
  CLUS_2                          71                            44
  CLUS_3                          22                            44
  CLUS_4                          60                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2P16.1) MUTATED       20    121     45
  AMP PEAK  2(2P16.1) WILD-TYPE     17     67     64
D2V12, multiclass
        clus
vv       AMP PEAK  2(2P16.1) MUTATED AMP PEAK  2(2P16.1) WILD-TYPE
  CLUS_1                          20                            17
  CLUS_2                         121                            67
  CLUS_3                          45                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(2Q31.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(2Q31.2) MUTATED       11     26      9      9
  AMP PEAK  3(2Q31.2) WILD-TYPE     30     24     25     20
D3V1, multiclass
        clus
vv       AMP PEAK  3(2Q31.2) MUTATED AMP PEAK  3(2Q31.2) WILD-TYPE
  CLUS_1                          11                            30
  CLUS_2                          26                            24
  CLUS_3                           9                            25
  CLUS_4                           9                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(2Q31.2) MUTATED       13     28     14
  AMP PEAK  3(2Q31.2) WILD-TYPE     34     28     37
D3V2, multiclass
        clus
vv       AMP PEAK  3(2Q31.2) MUTATED AMP PEAK  3(2Q31.2) WILD-TYPE
  CLUS_1                          13                            34
  CLUS_2                          28                            28
  CLUS_3                          14                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(2Q31.2) MUTATED        9     20      8     22     86     27
  AMP PEAK  3(2Q31.2) WILD-TYPE     34     95     21     65     83     31
D3V3, multiclass
        clus
vv       AMP PEAK  3(2Q31.2) MUTATED AMP PEAK  3(2Q31.2) WILD-TYPE
  CLUS_1                           9                            34
  CLUS_2                          20                            95
  CLUS_3                           8                            21
  CLUS_4                          22                            65
  CLUS_5                          86                            83
  CLUS_6                          27                            31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(2Q31.2) MUTATED       26     47     25     33
  AMP PEAK  3(2Q31.2) WILD-TYPE     64     48     32     92
D3V4, multiclass
        clus
vv       AMP PEAK  3(2Q31.2) MUTATED AMP PEAK  3(2Q31.2) WILD-TYPE
  CLUS_1                          26                            64
  CLUS_2                          47                            48
  CLUS_3                          25                            32
  CLUS_4                          33                            92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(2Q31.2) MUTATED       28     36     43      9
  AMP PEAK  3(2Q31.2) WILD-TYPE     77     73     43     17
D3V5, multiclass
        clus
vv       AMP PEAK  3(2Q31.2) MUTATED AMP PEAK  3(2Q31.2) WILD-TYPE
  CLUS_1                          28                            77
  CLUS_2                          36                            73
  CLUS_3                          43                            43
  CLUS_4                           9                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(2Q31.2) MUTATED       27     33     17     21     12      6
  AMP PEAK  3(2Q31.2) WILD-TYPE     52     34     45     39     18     22
D3V6, multiclass
        clus
vv       AMP PEAK  3(2Q31.2) MUTATED AMP PEAK  3(2Q31.2) WILD-TYPE
  CLUS_1                          27                            52
  CLUS_2                          33                            34
  CLUS_3                          17                            45
  CLUS_4                          21                            39
  CLUS_5                          12                            18
  CLUS_6                           6                            22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(2Q31.2) MUTATED       26     77     50     18
  AMP PEAK  3(2Q31.2) WILD-TYPE     80     73    109     65
D3V7, multiclass
        clus
vv       AMP PEAK  3(2Q31.2) MUTATED AMP PEAK  3(2Q31.2) WILD-TYPE
  CLUS_1                          26                            80
  CLUS_2                          77                            73
  CLUS_3                          50                           109
  CLUS_4                          18                            65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(2Q31.2) MUTATED       42     91     38
  AMP PEAK  3(2Q31.2) WILD-TYPE    136     98     93
D3V8, multiclass
        clus
vv       AMP PEAK  3(2Q31.2) MUTATED AMP PEAK  3(2Q31.2) WILD-TYPE
  CLUS_1                          42                           136
  CLUS_2                          91                            98
  CLUS_3                          38                            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(2Q31.2) MUTATED       77     32     25     30
  AMP PEAK  3(2Q31.2) WILD-TYPE    107     55     99     50
D3V9, multiclass
        clus
vv       AMP PEAK  3(2Q31.2) MUTATED AMP PEAK  3(2Q31.2) WILD-TYPE
  CLUS_1                          77                           107
  CLUS_2                          32                            55
  CLUS_3                          25                            99
  CLUS_4                          30                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(2Q31.2) MUTATED       35     42     70     17
  AMP PEAK  3(2Q31.2) WILD-TYPE     54     76    129     52
D3V10, multiclass
        clus
vv       AMP PEAK  3(2Q31.2) MUTATED AMP PEAK  3(2Q31.2) WILD-TYPE
  CLUS_1                          35                            54
  CLUS_2                          42                            76
  CLUS_3                          70                           129
  CLUS_4                          17                            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(2Q31.2) MUTATED       15     47     13     38
  AMP PEAK  3(2Q31.2) WILD-TYPE     46     68     53     54
D3V11, multiclass
        clus
vv       AMP PEAK  3(2Q31.2) MUTATED AMP PEAK  3(2Q31.2) WILD-TYPE
  CLUS_1                          15                            46
  CLUS_2                          47                            68
  CLUS_3                          13                            53
  CLUS_4                          38                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(2Q31.2) MUTATED        8     73     32
  AMP PEAK  3(2Q31.2) WILD-TYPE     29    115     77
D3V12, multiclass
        clus
vv       AMP PEAK  3(2Q31.2) MUTATED AMP PEAK  3(2Q31.2) WILD-TYPE
  CLUS_1                           8                            29
  CLUS_2                          73                           115
  CLUS_3                          32                            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(3Q26.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.33) MUTATED       39     50     27     24
  AMP PEAK  4(3Q26.33) WILD-TYPE      2      0      7      5
D4V1, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                           39                              2
  CLUS_2                           50                              0
  CLUS_3                           27                              7
  CLUS_4                           24                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.33) MUTATED       43     56     41
  AMP PEAK  4(3Q26.33) WILD-TYPE      4      0     10
D4V2, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                           43                              4
  CLUS_2                           56                              0
  CLUS_3                           41                             10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3Q26.33) MUTATED       42     77     28     81    169     55
  AMP PEAK  4(3Q26.33) WILD-TYPE      1     38      1      6      0      3
D4V3, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                           42                              1
  CLUS_2                           77                             38
  CLUS_3                           28                              1
  CLUS_4                           81                              6
  CLUS_5                          169                              0
  CLUS_6                           55                              3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.33) MUTATED       85     95     55     95
  AMP PEAK  4(3Q26.33) WILD-TYPE      5      0      2     30
D4V4, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                           85                              5
  CLUS_2                           95                              0
  CLUS_3                           55                              2
  CLUS_4                           95                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.33) MUTATED       84     99     84     23
  AMP PEAK  4(3Q26.33) WILD-TYPE     21     10      2      3
D4V5, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                           84                             21
  CLUS_2                           99                             10
  CLUS_3                           84                              2
  CLUS_4                           23                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3Q26.33) MUTATED       68     59     58     59     25     21
  AMP PEAK  4(3Q26.33) WILD-TYPE     11      8      4      1      5      7
D4V6, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                           68                             11
  CLUS_2                           59                              8
  CLUS_3                           58                              4
  CLUS_4                           59                              1
  CLUS_5                           25                              5
  CLUS_6                           21                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.33) MUTATED      101    150    137     61
  AMP PEAK  4(3Q26.33) WILD-TYPE      5      0     22     22
D4V7, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                          101                              5
  CLUS_2                          150                              0
  CLUS_3                          137                             22
  CLUS_4                           61                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.33) MUTATED      163    188     98
  AMP PEAK  4(3Q26.33) WILD-TYPE     15      1     33
D4V8, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                          163                             15
  CLUS_2                          188                              1
  CLUS_3                           98                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.33) MUTATED      172     85     95     77
  AMP PEAK  4(3Q26.33) WILD-TYPE     12      2     29      3
D4V9, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                          172                             12
  CLUS_2                           85                              2
  CLUS_3                           95                             29
  CLUS_4                           77                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.33) MUTATED       89    108    189     43
  AMP PEAK  4(3Q26.33) WILD-TYPE      0     10     10     26
D4V10, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                           89                              0
  CLUS_2                          108                             10
  CLUS_3                          189                             10
  CLUS_4                           43                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.33) MUTATED       56    109     47     88
  AMP PEAK  4(3Q26.33) WILD-TYPE      5      6     19      4
D4V11, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                           56                              5
  CLUS_2                          109                              6
  CLUS_3                           47                             19
  CLUS_4                           88                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.33) MUTATED       34    179     87
  AMP PEAK  4(3Q26.33) WILD-TYPE      3      9     22
D4V12, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                           34                              3
  CLUS_2                          179                              9
  CLUS_3                           87                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(4Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED       11     17      8     10
  AMP PEAK  5(4Q12) WILD-TYPE     30     33     26     19
D5V1, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        11                          30
  CLUS_2                        17                          33
  CLUS_3                         8                          26
  CLUS_4                        10                          19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED       15     17     14
  AMP PEAK  5(4Q12) WILD-TYPE     32     39     37
D5V2, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        15                          32
  CLUS_2                        17                          39
  CLUS_3                        14                          37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(4Q12) MUTATED       12     15     10     16     44     22
  AMP PEAK  5(4Q12) WILD-TYPE     31    100     19     71    125     36
D5V3, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        12                          31
  CLUS_2                        15                         100
  CLUS_3                        10                          19
  CLUS_4                        16                          71
  CLUS_5                        44                         125
  CLUS_6                        22                          36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED       23     25     13     18
  AMP PEAK  5(4Q12) WILD-TYPE     67     70     44    107
D5V4, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        23                          67
  CLUS_2                        25                          70
  CLUS_3                        13                          44
  CLUS_4                        18                         107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED       24     24     19      4
  AMP PEAK  5(4Q12) WILD-TYPE     81     85     67     22
D5V5, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        24                          81
  CLUS_2                        24                          85
  CLUS_3                        19                          67
  CLUS_4                         4                          22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(4Q12) MUTATED       16      8     17     13      6     11
  AMP PEAK  5(4Q12) WILD-TYPE     63     59     45     47     24     17
D5V6, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        16                          63
  CLUS_2                         8                          59
  CLUS_3                        17                          45
  CLUS_4                        13                          47
  CLUS_5                         6                          24
  CLUS_6                        11                          17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED       24     36     46     11
  AMP PEAK  5(4Q12) WILD-TYPE     82    114    113     72
D5V7, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        24                          82
  CLUS_2                        36                         114
  CLUS_3                        46                         113
  CLUS_4                        11                          72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED       38     49     30
  AMP PEAK  5(4Q12) WILD-TYPE    140    140    101
D5V8, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        38                         140
  CLUS_2                        49                         140
  CLUS_3                        30                         101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED       52     23     21     15
  AMP PEAK  5(4Q12) WILD-TYPE    132     64    103     65
D5V9, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        52                         132
  CLUS_2                        23                          64
  CLUS_3                        21                         103
  CLUS_4                        15                          65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED       16     31     51     13
  AMP PEAK  5(4Q12) WILD-TYPE     73     87    148     56
D5V10, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        16                          73
  CLUS_2                        31                          87
  CLUS_3                        51                         148
  CLUS_4                        13                          56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED       16     29      9     17
  AMP PEAK  5(4Q12) WILD-TYPE     45     86     57     75
D5V11, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        16                          45
  CLUS_2                        29                          86
  CLUS_3                         9                          57
  CLUS_4                        17                          75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED       13     41     17
  AMP PEAK  5(4Q12) WILD-TYPE     24    147     92
D5V12, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        13                          24
  CLUS_2                        41                         147
  CLUS_3                        17                          92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5P15.33) MUTATED       34     40     26     22
  AMP PEAK  6(5P15.33) WILD-TYPE      7     10      8      7
D6V1, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           34                              7
  CLUS_2                           40                             10
  CLUS_3                           26                              8
  CLUS_4                           22                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P15.33) MUTATED       36     44     42
  AMP PEAK  6(5P15.33) WILD-TYPE     11     12      9
D6V2, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           36                             11
  CLUS_2                           44                             12
  CLUS_3                           42                              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(5P15.33) MUTATED       37     76     26     67    123     58
  AMP PEAK  6(5P15.33) WILD-TYPE      6     39      3     20     46      0
D6V3, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           37                              6
  CLUS_2                           76                             39
  CLUS_3                           26                              3
  CLUS_4                           67                             20
  CLUS_5                          123                             46
  CLUS_6                           58                              0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5P15.33) MUTATED       84     71     40     88
  AMP PEAK  6(5P15.33) WILD-TYPE      6     24     17     37
D6V4, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           84                              6
  CLUS_2                           71                             24
  CLUS_3                           40                             17
  CLUS_4                           88                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5P15.33) MUTATED       72     84     69     23
  AMP PEAK  6(5P15.33) WILD-TYPE     33     25     17      3
D6V5, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           72                             33
  CLUS_2                           84                             25
  CLUS_3                           69                             17
  CLUS_4                           23                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(5P15.33) MUTATED       59     50     47     51     23     18
  AMP PEAK  6(5P15.33) WILD-TYPE     20     17     15      9      7     10
D6V6, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           59                             20
  CLUS_2                           50                             17
  CLUS_3                           47                             15
  CLUS_4                           51                              9
  CLUS_5                           23                              7
  CLUS_6                           18                             10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5P15.33) MUTATED       81    111    130     62
  AMP PEAK  6(5P15.33) WILD-TYPE     25     39     29     21
D6V7, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           81                             25
  CLUS_2                          111                             39
  CLUS_3                          130                             29
  CLUS_4                           62                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P15.33) MUTATED      144    135    105
  AMP PEAK  6(5P15.33) WILD-TYPE     34     54     26
D6V8, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                          144                             34
  CLUS_2                          135                             54
  CLUS_3                          105                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5P15.33) MUTATED      147     73     92     55
  AMP PEAK  6(5P15.33) WILD-TYPE     37     14     32     25
D6V9, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                          147                             37
  CLUS_2                           73                             14
  CLUS_3                           92                             32
  CLUS_4                           55                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5P15.33) MUTATED       66     88    168     45
  AMP PEAK  6(5P15.33) WILD-TYPE     23     30     31     24
D6V10, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           66                             23
  CLUS_2                           88                             30
  CLUS_3                          168                             31
  CLUS_4                           45                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5P15.33) MUTATED       54     93     41     70
  AMP PEAK  6(5P15.33) WILD-TYPE      7     22     25     22
D6V11, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           54                              7
  CLUS_2                           93                             22
  CLUS_3                           41                             25
  CLUS_4                           70                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P15.33) MUTATED       32    145     81
  AMP PEAK  6(5P15.33) WILD-TYPE      5     43     28
D6V12, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           32                              5
  CLUS_2                          145                             43
  CLUS_3                           81                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(5P12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5P12) MUTATED       31     38     24     21
  AMP PEAK  7(5P12) WILD-TYPE     10     12     10      8
D7V1, multiclass
        clus
vv       AMP PEAK  7(5P12) MUTATED AMP PEAK  7(5P12) WILD-TYPE
  CLUS_1                        31                          10
  CLUS_2                        38                          12
  CLUS_3                        24                          10
  CLUS_4                        21                           8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P12) MUTATED       33     42     39
  AMP PEAK  7(5P12) WILD-TYPE     14     14     12
D7V2, multiclass
        clus
vv       AMP PEAK  7(5P12) MUTATED AMP PEAK  7(5P12) WILD-TYPE
  CLUS_1                        33                          14
  CLUS_2                        42                          14
  CLUS_3                        39                          12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(5P12) MUTATED       32     63     26     56    120     57
  AMP PEAK  7(5P12) WILD-TYPE     11     52      3     31     49      1
D7V3, multiclass
        clus
vv       AMP PEAK  7(5P12) MUTATED AMP PEAK  7(5P12) WILD-TYPE
  CLUS_1                        32                          11
  CLUS_2                        63                          52
  CLUS_3                        26                           3
  CLUS_4                        56                          31
  CLUS_5                       120                          49
  CLUS_6                        57                           1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5P12) MUTATED       78     67     37     75
  AMP PEAK  7(5P12) WILD-TYPE     12     28     20     50
D7V4, multiclass
        clus
vv       AMP PEAK  7(5P12) MUTATED AMP PEAK  7(5P12) WILD-TYPE
  CLUS_1                        78                          12
  CLUS_2                        67                          28
  CLUS_3                        37                          20
  CLUS_4                        75                          50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5P12) MUTATED       66     73     64     21
  AMP PEAK  7(5P12) WILD-TYPE     39     36     22      5
D7V5, multiclass
        clus
vv       AMP PEAK  7(5P12) MUTATED AMP PEAK  7(5P12) WILD-TYPE
  CLUS_1                        66                          39
  CLUS_2                        73                          36
  CLUS_3                        64                          22
  CLUS_4                        21                           5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(5P12) MUTATED       54     44     44     45     19     18
  AMP PEAK  7(5P12) WILD-TYPE     25     23     18     15     11     10
D7V6, multiclass
        clus
vv       AMP PEAK  7(5P12) MUTATED AMP PEAK  7(5P12) WILD-TYPE
  CLUS_1                        54                          25
  CLUS_2                        44                          23
  CLUS_3                        44                          18
  CLUS_4                        45                          15
  CLUS_5                        19                          11
  CLUS_6                        18                          10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5P12) MUTATED       70    107    119     55
  AMP PEAK  7(5P12) WILD-TYPE     36     43     40     28
D7V7, multiclass
        clus
vv       AMP PEAK  7(5P12) MUTATED AMP PEAK  7(5P12) WILD-TYPE
  CLUS_1                        70                          36
  CLUS_2                       107                          43
  CLUS_3                       119                          40
  CLUS_4                        55                          28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P12) MUTATED      126    131     94
  AMP PEAK  7(5P12) WILD-TYPE     52     58     37
D7V8, multiclass
        clus
vv       AMP PEAK  7(5P12) MUTATED AMP PEAK  7(5P12) WILD-TYPE
  CLUS_1                       126                          52
  CLUS_2                       131                          58
  CLUS_3                        94                          37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5P12) MUTATED      135     64     84     54
  AMP PEAK  7(5P12) WILD-TYPE     49     23     40     26
D7V9, multiclass
        clus
vv       AMP PEAK  7(5P12) MUTATED AMP PEAK  7(5P12) WILD-TYPE
  CLUS_1                       135                          49
  CLUS_2                        64                          23
  CLUS_3                        84                          40
  CLUS_4                        54                          26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5P12) MUTATED       65     79    151     42
  AMP PEAK  7(5P12) WILD-TYPE     24     39     48     27
D7V10, multiclass
        clus
vv       AMP PEAK  7(5P12) MUTATED AMP PEAK  7(5P12) WILD-TYPE
  CLUS_1                        65                          24
  CLUS_2                        79                          39
  CLUS_3                       151                          48
  CLUS_4                        42                          27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5P12) MUTATED       46     85     40     61
  AMP PEAK  7(5P12) WILD-TYPE     15     30     26     31
D7V11, multiclass
        clus
vv       AMP PEAK  7(5P12) MUTATED AMP PEAK  7(5P12) WILD-TYPE
  CLUS_1                        46                          15
  CLUS_2                        85                          30
  CLUS_3                        40                          26
  CLUS_4                        61                          31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P12) MUTATED       27    127     78
  AMP PEAK  7(5P12) WILD-TYPE     10     61     31
D7V12, multiclass
        clus
vv       AMP PEAK  7(5P12) MUTATED AMP PEAK  7(5P12) WILD-TYPE
  CLUS_1                        27                          10
  CLUS_2                       127                          61
  CLUS_3                        78                          31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(6P12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P12.1) MUTATED       12     17     13     12
  AMP PEAK  8(6P12.1) WILD-TYPE     29     33     21     17
D8V1, multiclass
        clus
vv       AMP PEAK  8(6P12.1) MUTATED AMP PEAK  8(6P12.1) WILD-TYPE
  CLUS_1                          12                            29
  CLUS_2                          17                            33
  CLUS_3                          13                            21
  CLUS_4                          12                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P12.1) MUTATED       14     19     21
  AMP PEAK  8(6P12.1) WILD-TYPE     33     37     30
D8V2, multiclass
        clus
vv       AMP PEAK  8(6P12.1) MUTATED AMP PEAK  8(6P12.1) WILD-TYPE
  CLUS_1                          14                            33
  CLUS_2                          19                            37
  CLUS_3                          21                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(6P12.1) MUTATED       15     23      8     20     71     29
  AMP PEAK  8(6P12.1) WILD-TYPE     28     92     21     67     98     29
D8V3, multiclass
        clus
vv       AMP PEAK  8(6P12.1) MUTATED AMP PEAK  8(6P12.1) WILD-TYPE
  CLUS_1                          15                            28
  CLUS_2                          23                            92
  CLUS_3                           8                            21
  CLUS_4                          20                            67
  CLUS_5                          71                            98
  CLUS_6                          29                            29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P12.1) MUTATED       30     34     19     32
  AMP PEAK  8(6P12.1) WILD-TYPE     60     61     38     93
D8V4, multiclass
        clus
vv       AMP PEAK  8(6P12.1) MUTATED AMP PEAK  8(6P12.1) WILD-TYPE
  CLUS_1                          30                            60
  CLUS_2                          34                            61
  CLUS_3                          19                            38
  CLUS_4                          32                            93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P12.1) MUTATED       33     35     36      7
  AMP PEAK  8(6P12.1) WILD-TYPE     72     74     50     19
D8V5, multiclass
        clus
vv       AMP PEAK  8(6P12.1) MUTATED AMP PEAK  8(6P12.1) WILD-TYPE
  CLUS_1                          33                            72
  CLUS_2                          35                            74
  CLUS_3                          36                            50
  CLUS_4                           7                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(6P12.1) MUTATED       22     27     24     22      8      8
  AMP PEAK  8(6P12.1) WILD-TYPE     57     40     38     38     22     20
D8V6, multiclass
        clus
vv       AMP PEAK  8(6P12.1) MUTATED AMP PEAK  8(6P12.1) WILD-TYPE
  CLUS_1                          22                            57
  CLUS_2                          27                            40
  CLUS_3                          24                            38
  CLUS_4                          22                            38
  CLUS_5                           8                            22
  CLUS_6                           8                            20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P12.1) MUTATED       19     60     59     26
  AMP PEAK  8(6P12.1) WILD-TYPE     87     90    100     57
D8V7, multiclass
        clus
vv       AMP PEAK  8(6P12.1) MUTATED AMP PEAK  8(6P12.1) WILD-TYPE
  CLUS_1                          19                            87
  CLUS_2                          60                            90
  CLUS_3                          59                           100
  CLUS_4                          26                            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P12.1) MUTATED       47     68     49
  AMP PEAK  8(6P12.1) WILD-TYPE    131    121     82
D8V8, multiclass
        clus
vv       AMP PEAK  8(6P12.1) MUTATED AMP PEAK  8(6P12.1) WILD-TYPE
  CLUS_1                          47                           131
  CLUS_2                          68                           121
  CLUS_3                          49                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P12.1) MUTATED       72     28     27     30
  AMP PEAK  8(6P12.1) WILD-TYPE    112     59     97     50
D8V9, multiclass
        clus
vv       AMP PEAK  8(6P12.1) MUTATED AMP PEAK  8(6P12.1) WILD-TYPE
  CLUS_1                          72                           112
  CLUS_2                          28                            59
  CLUS_3                          27                            97
  CLUS_4                          30                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P12.1) MUTATED       35     35     71     16
  AMP PEAK  8(6P12.1) WILD-TYPE     54     83    128     53
D8V10, multiclass
        clus
vv       AMP PEAK  8(6P12.1) MUTATED AMP PEAK  8(6P12.1) WILD-TYPE
  CLUS_1                          35                            54
  CLUS_2                          35                            83
  CLUS_3                          71                           128
  CLUS_4                          16                            53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P12.1) MUTATED       19     41     17     34
  AMP PEAK  8(6P12.1) WILD-TYPE     42     74     49     58
D8V11, multiclass
        clus
vv       AMP PEAK  8(6P12.1) MUTATED AMP PEAK  8(6P12.1) WILD-TYPE
  CLUS_1                          19                            42
  CLUS_2                          41                            74
  CLUS_3                          17                            49
  CLUS_4                          34                            58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P12.1) MUTATED       12     71     28
  AMP PEAK  8(6P12.1) WILD-TYPE     25    117     81
D8V12, multiclass
        clus
vv       AMP PEAK  8(6P12.1) MUTATED AMP PEAK  8(6P12.1) WILD-TYPE
  CLUS_1                          12                            25
  CLUS_2                          71                           117
  CLUS_3                          28                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(6Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q12) MUTATED       13     15     10     11
  AMP PEAK  9(6Q12) WILD-TYPE     28     35     24     18
D9V1, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        13                          28
  CLUS_2                        15                          35
  CLUS_3                        10                          24
  CLUS_4                        11                          18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q12) MUTATED       13     18     18
  AMP PEAK  9(6Q12) WILD-TYPE     34     38     33
D9V2, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        13                          34
  CLUS_2                        18                          38
  CLUS_3                        18                          33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(6Q12) MUTATED       10     19      7     24     66     26
  AMP PEAK  9(6Q12) WILD-TYPE     33     96     22     63    103     32
D9V3, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        10                          33
  CLUS_2                        19                          96
  CLUS_3                         7                          22
  CLUS_4                        24                          63
  CLUS_5                        66                         103
  CLUS_6                        26                          32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q12) MUTATED       26     32     20     29
  AMP PEAK  9(6Q12) WILD-TYPE     64     63     37     96
D9V4, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        26                          64
  CLUS_2                        32                          63
  CLUS_3                        20                          37
  CLUS_4                        29                          96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q12) MUTATED       33     30     32      8
  AMP PEAK  9(6Q12) WILD-TYPE     72     79     54     18
D9V5, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        33                          72
  CLUS_2                        30                          79
  CLUS_3                        32                          54
  CLUS_4                         8                          18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(6Q12) MUTATED       22     22     19     23     10      7
  AMP PEAK  9(6Q12) WILD-TYPE     57     45     43     37     20     21
D9V6, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        22                          57
  CLUS_2                        22                          45
  CLUS_3                        19                          43
  CLUS_4                        23                          37
  CLUS_5                        10                          20
  CLUS_6                         7                          21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q12) MUTATED       17     56     55     22
  AMP PEAK  9(6Q12) WILD-TYPE     89     94    104     61
D9V7, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        17                          89
  CLUS_2                        56                          94
  CLUS_3                        55                         104
  CLUS_4                        22                          61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q12) MUTATED       38     66     46
  AMP PEAK  9(6Q12) WILD-TYPE    140    123     85
D9V8, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        38                         140
  CLUS_2                        66                         123
  CLUS_3                        46                          85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q12) MUTATED       70     22     25     29
  AMP PEAK  9(6Q12) WILD-TYPE    114     65     99     51
D9V9, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        70                         114
  CLUS_2                        22                          65
  CLUS_3                        25                          99
  CLUS_4                        29                          51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q12) MUTATED       36     30     66     14
  AMP PEAK  9(6Q12) WILD-TYPE     53     88    133     55
D9V10, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        36                          53
  CLUS_2                        30                          88
  CLUS_3                        66                         133
  CLUS_4                        14                          55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q12) MUTATED       14     39     16     32
  AMP PEAK  9(6Q12) WILD-TYPE     47     76     50     60
D9V11, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        14                          47
  CLUS_2                        39                          76
  CLUS_3                        16                          50
  CLUS_4                        32                          60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q12) MUTATED       11     61     29
  AMP PEAK  9(6Q12) WILD-TYPE     26    127     80
D9V12, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        11                          26
  CLUS_2                        61                         127
  CLUS_3                        29                          80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(7P11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P11.2) MUTATED       20     33     17     11
  AMP PEAK 10(7P11.2) WILD-TYPE     21     17     17     18
D10V1, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                          20                            21
  CLUS_2                          33                            17
  CLUS_3                          17                            17
  CLUS_4                          11                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P11.2) MUTATED       23     37     21
  AMP PEAK 10(7P11.2) WILD-TYPE     24     19     30
D10V2, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                          23                            24
  CLUS_2                          37                            19
  CLUS_3                          21                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(7P11.2) MUTATED       33     44     16     22    107     34
  AMP PEAK 10(7P11.2) WILD-TYPE     10     71     13     65     62     24
D10V3, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                          33                            10
  CLUS_2                          44                            71
  CLUS_3                          16                            13
  CLUS_4                          22                            65
  CLUS_5                         107                            62
  CLUS_6                          34                            24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P11.2) MUTATED       43     61     26     56
  AMP PEAK 10(7P11.2) WILD-TYPE     47     34     31     69
D10V4, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                          43                            47
  CLUS_2                          61                            34
  CLUS_3                          26                            31
  CLUS_4                          56                            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P11.2) MUTATED       48     54     48     12
  AMP PEAK 10(7P11.2) WILD-TYPE     57     55     38     14
D10V5, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                          48                            57
  CLUS_2                          54                            55
  CLUS_3                          48                            38
  CLUS_4                          12                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(7P11.2) MUTATED       30     39     33     32     15     13
  AMP PEAK 10(7P11.2) WILD-TYPE     49     28     29     28     15     15
D10V6, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                          30                            49
  CLUS_2                          39                            28
  CLUS_3                          33                            29
  CLUS_4                          32                            28
  CLUS_5                          15                            15
  CLUS_6                          13                            15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P11.2) MUTATED       51     96     76     31
  AMP PEAK 10(7P11.2) WILD-TYPE     55     54     83     52
D10V7, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                          51                            55
  CLUS_2                          96                            54
  CLUS_3                          76                            83
  CLUS_4                          31                            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P11.2) MUTATED       78    122     54
  AMP PEAK 10(7P11.2) WILD-TYPE    100     67     77
D10V8, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                          78                           100
  CLUS_2                         122                            67
  CLUS_3                          54                            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P11.2) MUTATED       99     53     50     45
  AMP PEAK 10(7P11.2) WILD-TYPE     85     34     74     35
D10V9, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                          99                            85
  CLUS_2                          53                            34
  CLUS_3                          50                            74
  CLUS_4                          45                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P11.2) MUTATED       58     56    100     33
  AMP PEAK 10(7P11.2) WILD-TYPE     31     62     99     36
D10V10, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                          58                            31
  CLUS_2                          56                            62
  CLUS_3                         100                            99
  CLUS_4                          33                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P11.2) MUTATED       29     60     25     57
  AMP PEAK 10(7P11.2) WILD-TYPE     32     55     41     35
D10V11, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                          29                            32
  CLUS_2                          60                            55
  CLUS_3                          25                            41
  CLUS_4                          57                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P11.2) MUTATED       18    102     51
  AMP PEAK 10(7P11.2) WILD-TYPE     19     86     58
D10V12, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                          18                            19
  CLUS_2                         102                            86
  CLUS_3                          51                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(7Q21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q21.2) MUTATED       27     34     17     13
  AMP PEAK 11(7Q21.2) WILD-TYPE     14     16     17     16
D11V1, multiclass
        clus
vv       AMP PEAK 11(7Q21.2) MUTATED AMP PEAK 11(7Q21.2) WILD-TYPE
  CLUS_1                          27                            14
  CLUS_2                          34                            16
  CLUS_3                          17                            17
  CLUS_4                          13                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q21.2) MUTATED       30     39     22
  AMP PEAK 11(7Q21.2) WILD-TYPE     17     17     29
D11V2, multiclass
        clus
vv       AMP PEAK 11(7Q21.2) MUTATED AMP PEAK 11(7Q21.2) WILD-TYPE
  CLUS_1                          30                            17
  CLUS_2                          39                            17
  CLUS_3                          22                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(7Q21.2) MUTATED       35     34     17     17    119     42
  AMP PEAK 11(7Q21.2) WILD-TYPE      8     81     12     70     50     16
D11V3, multiclass
        clus
vv       AMP PEAK 11(7Q21.2) MUTATED AMP PEAK 11(7Q21.2) WILD-TYPE
  CLUS_1                          35                             8
  CLUS_2                          34                            81
  CLUS_3                          17                            12
  CLUS_4                          17                            70
  CLUS_5                         119                            50
  CLUS_6                          42                            16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q21.2) MUTATED       43     67     31     45
  AMP PEAK 11(7Q21.2) WILD-TYPE     47     28     26     80
D11V4, multiclass
        clus
vv       AMP PEAK 11(7Q21.2) MUTATED AMP PEAK 11(7Q21.2) WILD-TYPE
  CLUS_1                          43                            47
  CLUS_2                          67                            28
  CLUS_3                          31                            26
  CLUS_4                          45                            80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q21.2) MUTATED       50     55     55     14
  AMP PEAK 11(7Q21.2) WILD-TYPE     55     54     31     12
D11V5, multiclass
        clus
vv       AMP PEAK 11(7Q21.2) MUTATED AMP PEAK 11(7Q21.2) WILD-TYPE
  CLUS_1                          50                            55
  CLUS_2                          55                            54
  CLUS_3                          55                            31
  CLUS_4                          14                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(7Q21.2) MUTATED       42     33     33     34     17     15
  AMP PEAK 11(7Q21.2) WILD-TYPE     37     34     29     26     13     13
D11V6, multiclass
        clus
vv       AMP PEAK 11(7Q21.2) MUTATED AMP PEAK 11(7Q21.2) WILD-TYPE
  CLUS_1                          42                            37
  CLUS_2                          33                            34
  CLUS_3                          33                            29
  CLUS_4                          34                            26
  CLUS_5                          17                            13
  CLUS_6                          15                            13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q21.2) MUTATED       49    107     74     32
  AMP PEAK 11(7Q21.2) WILD-TYPE     57     43     85     51
D11V7, multiclass
        clus
vv       AMP PEAK 11(7Q21.2) MUTATED AMP PEAK 11(7Q21.2) WILD-TYPE
  CLUS_1                          49                            57
  CLUS_2                         107                            43
  CLUS_3                          74                            85
  CLUS_4                          32                            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q21.2) MUTATED       74    130     58
  AMP PEAK 11(7Q21.2) WILD-TYPE    104     59     73
D11V8, multiclass
        clus
vv       AMP PEAK 11(7Q21.2) MUTATED AMP PEAK 11(7Q21.2) WILD-TYPE
  CLUS_1                          74                           104
  CLUS_2                         130                            59
  CLUS_3                          58                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q21.2) MUTATED      111     48     41     54
  AMP PEAK 11(7Q21.2) WILD-TYPE     73     39     83     26
D11V9, multiclass
        clus
vv       AMP PEAK 11(7Q21.2) MUTATED AMP PEAK 11(7Q21.2) WILD-TYPE
  CLUS_1                         111                            73
  CLUS_2                          48                            39
  CLUS_3                          41                            83
  CLUS_4                          54                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q21.2) MUTATED       63     63    100     28
  AMP PEAK 11(7Q21.2) WILD-TYPE     26     55     99     41
D11V10, multiclass
        clus
vv       AMP PEAK 11(7Q21.2) MUTATED AMP PEAK 11(7Q21.2) WILD-TYPE
  CLUS_1                          63                            26
  CLUS_2                          63                            55
  CLUS_3                         100                            99
  CLUS_4                          28                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q21.2) MUTATED       26     61     23     58
  AMP PEAK 11(7Q21.2) WILD-TYPE     35     54     43     34
D11V11, multiclass
        clus
vv       AMP PEAK 11(7Q21.2) MUTATED AMP PEAK 11(7Q21.2) WILD-TYPE
  CLUS_1                          26                            35
  CLUS_2                          61                            54
  CLUS_3                          23                            43
  CLUS_4                          58                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q21.2) MUTATED       15    106     47
  AMP PEAK 11(7Q21.2) WILD-TYPE     22     82     62
D11V12, multiclass
        clus
vv       AMP PEAK 11(7Q21.2) MUTATED AMP PEAK 11(7Q21.2) WILD-TYPE
  CLUS_1                          15                            22
  CLUS_2                         106                            82
  CLUS_3                          47                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(8P11.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8P11.23) MUTATED       29     23     13     13
  AMP PEAK 12(8P11.23) WILD-TYPE     12     27     21     16
D12V1, multiclass
        clus
vv       AMP PEAK 12(8P11.23) MUTATED AMP PEAK 12(8P11.23) WILD-TYPE
  CLUS_1                           29                             12
  CLUS_2                           23                             27
  CLUS_3                           13                             21
  CLUS_4                           13                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8P11.23) MUTATED       30     26     22
  AMP PEAK 12(8P11.23) WILD-TYPE     17     30     29
D12V2, multiclass
        clus
vv       AMP PEAK 12(8P11.23) MUTATED AMP PEAK 12(8P11.23) WILD-TYPE
  CLUS_1                           30                             17
  CLUS_2                           26                             30
  CLUS_3                           22                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8P11.23) MUTATED       24     41     16     48     82     27
  AMP PEAK 12(8P11.23) WILD-TYPE     19     74     13     39     87     31
D12V3, multiclass
        clus
vv       AMP PEAK 12(8P11.23) MUTATED AMP PEAK 12(8P11.23) WILD-TYPE
  CLUS_1                           24                             19
  CLUS_2                           41                             74
  CLUS_3                           16                             13
  CLUS_4                           48                             39
  CLUS_5                           82                             87
  CLUS_6                           27                             31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8P11.23) MUTATED       46     53     21     49
  AMP PEAK 12(8P11.23) WILD-TYPE     44     42     36     76
D12V4, multiclass
        clus
vv       AMP PEAK 12(8P11.23) MUTATED AMP PEAK 12(8P11.23) WILD-TYPE
  CLUS_1                           46                             44
  CLUS_2                           53                             42
  CLUS_3                           21                             36
  CLUS_4                           49                             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8P11.23) MUTATED       45     58     39     15
  AMP PEAK 12(8P11.23) WILD-TYPE     60     51     47     11
D12V5, multiclass
        clus
vv       AMP PEAK 12(8P11.23) MUTATED AMP PEAK 12(8P11.23) WILD-TYPE
  CLUS_1                           45                             60
  CLUS_2                           58                             51
  CLUS_3                           39                             47
  CLUS_4                           15                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8P11.23) MUTATED       36     28     33     29     20     11
  AMP PEAK 12(8P11.23) WILD-TYPE     43     39     29     31     10     17
D12V6, multiclass
        clus
vv       AMP PEAK 12(8P11.23) MUTATED AMP PEAK 12(8P11.23) WILD-TYPE
  CLUS_1                           36                             43
  CLUS_2                           28                             39
  CLUS_3                           33                             29
  CLUS_4                           29                             31
  CLUS_5                           20                             10
  CLUS_6                           11                             17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8P11.23) MUTATED       61     71     71     32
  AMP PEAK 12(8P11.23) WILD-TYPE     45     79     88     51
D12V7, multiclass
        clus
vv       AMP PEAK 12(8P11.23) MUTATED AMP PEAK 12(8P11.23) WILD-TYPE
  CLUS_1                           61                             45
  CLUS_2                           71                             79
  CLUS_3                           71                             88
  CLUS_4                           32                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8P11.23) MUTATED       96     86     53
  AMP PEAK 12(8P11.23) WILD-TYPE     82    103     78
D12V8, multiclass
        clus
vv       AMP PEAK 12(8P11.23) MUTATED AMP PEAK 12(8P11.23) WILD-TYPE
  CLUS_1                           96                             82
  CLUS_2                           86                            103
  CLUS_3                           53                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8P11.23) MUTATED       90     43     56     34
  AMP PEAK 12(8P11.23) WILD-TYPE     94     44     68     46
D12V9, multiclass
        clus
vv       AMP PEAK 12(8P11.23) MUTATED AMP PEAK 12(8P11.23) WILD-TYPE
  CLUS_1                           90                             94
  CLUS_2                           43                             44
  CLUS_3                           56                             68
  CLUS_4                           34                             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8P11.23) MUTATED       35     55    104     29
  AMP PEAK 12(8P11.23) WILD-TYPE     54     63     95     40
D12V10, multiclass
        clus
vv       AMP PEAK 12(8P11.23) MUTATED AMP PEAK 12(8P11.23) WILD-TYPE
  CLUS_1                           35                             54
  CLUS_2                           55                             63
  CLUS_3                          104                             95
  CLUS_4                           29                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8P11.23) MUTATED       28     50     21     52
  AMP PEAK 12(8P11.23) WILD-TYPE     33     65     45     40
D12V11, multiclass
        clus
vv       AMP PEAK 12(8P11.23) MUTATED AMP PEAK 12(8P11.23) WILD-TYPE
  CLUS_1                           28                             33
  CLUS_2                           50                             65
  CLUS_3                           21                             45
  CLUS_4                           52                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8P11.23) MUTATED       15     92     44
  AMP PEAK 12(8P11.23) WILD-TYPE     22     96     65
D12V12, multiclass
        clus
vv       AMP PEAK 12(8P11.23) MUTATED AMP PEAK 12(8P11.23) WILD-TYPE
  CLUS_1                           15                             22
  CLUS_2                           92                             96
  CLUS_3                           44                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(8Q24.21) MUTATED       28     33     25     20
  AMP PEAK 13(8Q24.21) WILD-TYPE     13     17      9      9
D13V1, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           28                             13
  CLUS_2                           33                             17
  CLUS_3                           25                              9
  CLUS_4                           20                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q24.21) MUTATED       32     37     37
  AMP PEAK 13(8Q24.21) WILD-TYPE     15     19     14
D13V2, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           32                             15
  CLUS_2                           37                             19
  CLUS_3                           37                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(8Q24.21) MUTATED       39     69     24     52    115     53
  AMP PEAK 13(8Q24.21) WILD-TYPE      4     46      5     35     54      5
D13V3, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           39                              4
  CLUS_2                           69                             46
  CLUS_3                           24                              5
  CLUS_4                           52                             35
  CLUS_5                          115                             54
  CLUS_6                           53                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(8Q24.21) MUTATED       71     74     36     79
  AMP PEAK 13(8Q24.21) WILD-TYPE     19     21     21     46
D13V4, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           71                             19
  CLUS_2                           74                             21
  CLUS_3                           36                             21
  CLUS_4                           79                             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(8Q24.21) MUTATED       65     80     66     20
  AMP PEAK 13(8Q24.21) WILD-TYPE     40     29     20      6
D13V5, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           65                             40
  CLUS_2                           80                             29
  CLUS_3                           66                             20
  CLUS_4                           20                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(8Q24.21) MUTATED       56     49     48     41     19     18
  AMP PEAK 13(8Q24.21) WILD-TYPE     23     18     14     19     11     10
D13V6, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           56                             23
  CLUS_2                           49                             18
  CLUS_3                           48                             14
  CLUS_4                           41                             19
  CLUS_5                           19                             11
  CLUS_6                           18                             10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(8Q24.21) MUTATED       74    104    116     55
  AMP PEAK 13(8Q24.21) WILD-TYPE     32     46     43     28
D13V7, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           74                             32
  CLUS_2                          104                             46
  CLUS_3                          116                             43
  CLUS_4                           55                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q24.21) MUTATED      127    127     95
  AMP PEAK 13(8Q24.21) WILD-TYPE     51     62     36
D13V8, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                          127                             51
  CLUS_2                          127                             62
  CLUS_3                           95                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(8Q24.21) MUTATED      135     64     85     50
  AMP PEAK 13(8Q24.21) WILD-TYPE     49     23     39     30
D13V9, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                          135                             49
  CLUS_2                           64                             23
  CLUS_3                           85                             39
  CLUS_4                           50                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(8Q24.21) MUTATED       60     81    149     44
  AMP PEAK 13(8Q24.21) WILD-TYPE     29     37     50     25
D13V10, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           60                             29
  CLUS_2                           81                             37
  CLUS_3                          149                             50
  CLUS_4                           44                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(8Q24.21) MUTATED       45     84     39     68
  AMP PEAK 13(8Q24.21) WILD-TYPE     16     31     27     24
D13V11, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           45                             16
  CLUS_2                           84                             31
  CLUS_3                           39                             27
  CLUS_4                           68                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q24.21) MUTATED       26    133     77
  AMP PEAK 13(8Q24.21) WILD-TYPE     11     55     32
D13V12, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           26                             11
  CLUS_2                          133                             55
  CLUS_3                           77                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(9P13.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(9P13.3) MUTATED       10     12      6     12
  AMP PEAK 14(9P13.3) WILD-TYPE     31     38     28     17
D14V1, multiclass
        clus
vv       AMP PEAK 14(9P13.3) MUTATED AMP PEAK 14(9P13.3) WILD-TYPE
  CLUS_1                          10                            31
  CLUS_2                          12                            38
  CLUS_3                           6                            28
  CLUS_4                          12                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(9P13.3) MUTATED       13     16     11
  AMP PEAK 14(9P13.3) WILD-TYPE     34     40     40
D14V2, multiclass
        clus
vv       AMP PEAK 14(9P13.3) MUTATED AMP PEAK 14(9P13.3) WILD-TYPE
  CLUS_1                          13                            34
  CLUS_2                          16                            40
  CLUS_3                          11                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(9P13.3) MUTATED       16     20      8     10     66     16
  AMP PEAK 14(9P13.3) WILD-TYPE     27     95     21     77    103     42
D14V3, multiclass
        clus
vv       AMP PEAK 14(9P13.3) MUTATED AMP PEAK 14(9P13.3) WILD-TYPE
  CLUS_1                          16                            27
  CLUS_2                          20                            95
  CLUS_3                           8                            21
  CLUS_4                          10                            77
  CLUS_5                          66                           103
  CLUS_6                          16                            42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(9P13.3) MUTATED       25     38     18     24
  AMP PEAK 14(9P13.3) WILD-TYPE     65     57     39    101
D14V4, multiclass
        clus
vv       AMP PEAK 14(9P13.3) MUTATED AMP PEAK 14(9P13.3) WILD-TYPE
  CLUS_1                          25                            65
  CLUS_2                          38                            57
  CLUS_3                          18                            39
  CLUS_4                          24                           101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(9P13.3) MUTATED       23     23     35      6
  AMP PEAK 14(9P13.3) WILD-TYPE     82     86     51     20
D14V5, multiclass
        clus
vv       AMP PEAK 14(9P13.3) MUTATED AMP PEAK 14(9P13.3) WILD-TYPE
  CLUS_1                          23                            82
  CLUS_2                          23                            86
  CLUS_3                          35                            51
  CLUS_4                           6                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(9P13.3) MUTATED       29     16     17     22      0      3
  AMP PEAK 14(9P13.3) WILD-TYPE     50     51     45     38     30     25
D14V6, multiclass
        clus
vv       AMP PEAK 14(9P13.3) MUTATED AMP PEAK 14(9P13.3) WILD-TYPE
  CLUS_1                          29                            50
  CLUS_2                          16                            51
  CLUS_3                          17                            45
  CLUS_4                          22                            38
  CLUS_5                           0                            30
  CLUS_6                           3                            25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(9P13.3) MUTATED       21     57     43     15
  AMP PEAK 14(9P13.3) WILD-TYPE     85     93    116     68
D14V7, multiclass
        clus
vv       AMP PEAK 14(9P13.3) MUTATED AMP PEAK 14(9P13.3) WILD-TYPE
  CLUS_1                          21                            85
  CLUS_2                          57                            93
  CLUS_3                          43                           116
  CLUS_4                          15                            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(9P13.3) MUTATED       34     68     34
  AMP PEAK 14(9P13.3) WILD-TYPE    144    121     97
D14V8, multiclass
        clus
vv       AMP PEAK 14(9P13.3) MUTATED AMP PEAK 14(9P13.3) WILD-TYPE
  CLUS_1                          34                           144
  CLUS_2                          68                           121
  CLUS_3                          34                            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(9P13.3) MUTATED       59     23     18     31
  AMP PEAK 14(9P13.3) WILD-TYPE    125     64    106     49
D14V9, multiclass
        clus
vv       AMP PEAK 14(9P13.3) MUTATED AMP PEAK 14(9P13.3) WILD-TYPE
  CLUS_1                          59                           125
  CLUS_2                          23                            64
  CLUS_3                          18                           106
  CLUS_4                          31                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(9P13.3) MUTATED       32     41     48     10
  AMP PEAK 14(9P13.3) WILD-TYPE     57     77    151     59
D14V10, multiclass
        clus
vv       AMP PEAK 14(9P13.3) MUTATED AMP PEAK 14(9P13.3) WILD-TYPE
  CLUS_1                          32                            57
  CLUS_2                          41                            77
  CLUS_3                          48                           151
  CLUS_4                          10                            59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(9P13.3) MUTATED       14     34     14     29
  AMP PEAK 14(9P13.3) WILD-TYPE     47     81     52     63
D14V11, multiclass
        clus
vv       AMP PEAK 14(9P13.3) MUTATED AMP PEAK 14(9P13.3) WILD-TYPE
  CLUS_1                          14                            47
  CLUS_2                          34                            81
  CLUS_3                          14                            52
  CLUS_4                          29                            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(9P13.3) MUTATED        9     54     28
  AMP PEAK 14(9P13.3) WILD-TYPE     28    134     81
D14V12, multiclass
        clus
vv       AMP PEAK 14(9P13.3) MUTATED AMP PEAK 14(9P13.3) WILD-TYPE
  CLUS_1                           9                            28
  CLUS_2                          54                           134
  CLUS_3                          28                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(11Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(11Q13.3) MUTATED       17     10     12     14
  AMP PEAK 15(11Q13.3) WILD-TYPE     24     40     22     15
D15V1, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           17                             24
  CLUS_2                           10                             40
  CLUS_3                           12                             22
  CLUS_4                           14                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11Q13.3) MUTATED       19     12     22
  AMP PEAK 15(11Q13.3) WILD-TYPE     28     44     29
D15V2, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           19                             28
  CLUS_2                           12                             44
  CLUS_3                           22                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(11Q13.3) MUTATED       26     30     14     35     56     24
  AMP PEAK 15(11Q13.3) WILD-TYPE     17     85     15     52    113     34
D15V3, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           26                             17
  CLUS_2                           30                             85
  CLUS_3                           14                             15
  CLUS_4                           35                             52
  CLUS_5                           56                            113
  CLUS_6                           24                             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(11Q13.3) MUTATED       50     37     20     32
  AMP PEAK 15(11Q13.3) WILD-TYPE     40     58     37     93
D15V4, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           50                             40
  CLUS_2                           37                             58
  CLUS_3                           20                             37
  CLUS_4                           32                             93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(11Q13.3) MUTATED       32     41     33     10
  AMP PEAK 15(11Q13.3) WILD-TYPE     73     68     53     16
D15V5, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           32                             73
  CLUS_2                           41                             68
  CLUS_3                           33                             53
  CLUS_4                           10                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(11Q13.3) MUTATED       30     23     27     23      5      8
  AMP PEAK 15(11Q13.3) WILD-TYPE     49     44     35     37     25     20
D15V6, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           30                             49
  CLUS_2                           23                             44
  CLUS_3                           27                             35
  CLUS_4                           23                             37
  CLUS_5                            5                             25
  CLUS_6                            8                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(11Q13.3) MUTATED       44     42     70     29
  AMP PEAK 15(11Q13.3) WILD-TYPE     62    108     89     54
D15V7, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           44                             62
  CLUS_2                           42                            108
  CLUS_3                           70                             89
  CLUS_4                           29                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11Q13.3) MUTATED       74     58     53
  AMP PEAK 15(11Q13.3) WILD-TYPE    104    131     78
D15V8, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           74                            104
  CLUS_2                           58                            131
  CLUS_3                           53                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(11Q13.3) MUTATED       78     39     41     20
  AMP PEAK 15(11Q13.3) WILD-TYPE    106     48     83     60
D15V9, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           78                            106
  CLUS_2                           39                             48
  CLUS_3                           41                             83
  CLUS_4                           20                             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(11Q13.3) MUTATED       24     47     89     18
  AMP PEAK 15(11Q13.3) WILD-TYPE     65     71    110     51
D15V10, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           24                             65
  CLUS_2                           47                             71
  CLUS_3                           89                            110
  CLUS_4                           18                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(11Q13.3) MUTATED       25     57     14     32
  AMP PEAK 15(11Q13.3) WILD-TYPE     36     58     52     60
D15V11, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           25                             36
  CLUS_2                           57                             58
  CLUS_3                           14                             52
  CLUS_4                           32                             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11Q13.3) MUTATED       20     76     32
  AMP PEAK 15(11Q13.3) WILD-TYPE     17    112     77
D15V12, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           20                             17
  CLUS_2                           76                            112
  CLUS_3                           32                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(12P13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(12P13.33) MUTATED       11     33     14     13
  AMP PEAK 16(12P13.33) WILD-TYPE     30     17     20     16
D16V1, multiclass
        clus
vv       AMP PEAK 16(12P13.33) MUTATED AMP PEAK 16(12P13.33) WILD-TYPE
  CLUS_1                            11                              30
  CLUS_2                            33                              17
  CLUS_3                            14                              20
  CLUS_4                            13                              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(12P13.33) MUTATED       17     34     20
  AMP PEAK 16(12P13.33) WILD-TYPE     30     22     31
D16V2, multiclass
        clus
vv       AMP PEAK 16(12P13.33) MUTATED AMP PEAK 16(12P13.33) WILD-TYPE
  CLUS_1                            17                              30
  CLUS_2                            34                              22
  CLUS_3                            20                              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(12P13.33) MUTATED       24     40     12     32    108     39
  AMP PEAK 16(12P13.33) WILD-TYPE     19     75     17     55     61     19
D16V3, multiclass
        clus
vv       AMP PEAK 16(12P13.33) MUTATED AMP PEAK 16(12P13.33) WILD-TYPE
  CLUS_1                            24                              19
  CLUS_2                            40                              75
  CLUS_3                            12                              17
  CLUS_4                            32                              55
  CLUS_5                           108                              61
  CLUS_6                            39                              19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(12P13.33) MUTATED       51     58     38     52
  AMP PEAK 16(12P13.33) WILD-TYPE     39     37     19     73
D16V4, multiclass
        clus
vv       AMP PEAK 16(12P13.33) MUTATED AMP PEAK 16(12P13.33) WILD-TYPE
  CLUS_1                            51                              39
  CLUS_2                            58                              37
  CLUS_3                            38                              19
  CLUS_4                            52                              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(12P13.33) MUTATED       53     53     53     12
  AMP PEAK 16(12P13.33) WILD-TYPE     52     56     33     14
D16V5, multiclass
        clus
vv       AMP PEAK 16(12P13.33) MUTATED AMP PEAK 16(12P13.33) WILD-TYPE
  CLUS_1                            53                              52
  CLUS_2                            53                              56
  CLUS_3                            53                              33
  CLUS_4                            12                              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(12P13.33) MUTATED       44     39     32     29     13     14
  AMP PEAK 16(12P13.33) WILD-TYPE     35     28     30     31     17     14
D16V6, multiclass
        clus
vv       AMP PEAK 16(12P13.33) MUTATED AMP PEAK 16(12P13.33) WILD-TYPE
  CLUS_1                            44                              35
  CLUS_2                            39                              28
  CLUS_3                            32                              30
  CLUS_4                            29                              31
  CLUS_5                            13                              17
  CLUS_6                            14                              14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(12P13.33) MUTATED       35     98     92     28
  AMP PEAK 16(12P13.33) WILD-TYPE     71     52     67     55
D16V7, multiclass
        clus
vv       AMP PEAK 16(12P13.33) MUTATED AMP PEAK 16(12P13.33) WILD-TYPE
  CLUS_1                            35                              71
  CLUS_2                            98                              52
  CLUS_3                            92                              67
  CLUS_4                            28                              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(12P13.33) MUTATED       72    111     70
  AMP PEAK 16(12P13.33) WILD-TYPE    106     78     61
D16V8, multiclass
        clus
vv       AMP PEAK 16(12P13.33) MUTATED AMP PEAK 16(12P13.33) WILD-TYPE
  CLUS_1                            72                             106
  CLUS_2                           111                              78
  CLUS_3                            70                              61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(12P13.33) MUTATED      104     48     49     46
  AMP PEAK 16(12P13.33) WILD-TYPE     80     39     75     34
D16V9, multiclass
        clus
vv       AMP PEAK 16(12P13.33) MUTATED AMP PEAK 16(12P13.33) WILD-TYPE
  CLUS_1                           104                              80
  CLUS_2                            48                              39
  CLUS_3                            49                              75
  CLUS_4                            46                              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(12P13.33) MUTATED       57     58    108     24
  AMP PEAK 16(12P13.33) WILD-TYPE     32     60     91     45
D16V10, multiclass
        clus
vv       AMP PEAK 16(12P13.33) MUTATED AMP PEAK 16(12P13.33) WILD-TYPE
  CLUS_1                            57                              32
  CLUS_2                            58                              60
  CLUS_3                           108                              91
  CLUS_4                            24                              45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(12P13.33) MUTATED       34     69     22     54
  AMP PEAK 16(12P13.33) WILD-TYPE     27     46     44     38
D16V11, multiclass
        clus
vv       AMP PEAK 16(12P13.33) MUTATED AMP PEAK 16(12P13.33) WILD-TYPE
  CLUS_1                            34                              27
  CLUS_2                            69                              46
  CLUS_3                            22                              44
  CLUS_4                            54                              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(12P13.33) MUTATED       19    111     49
  AMP PEAK 16(12P13.33) WILD-TYPE     18     77     60
D16V12, multiclass
        clus
vv       AMP PEAK 16(12P13.33) MUTATED AMP PEAK 16(12P13.33) WILD-TYPE
  CLUS_1                            19                              18
  CLUS_2                           111                              77
  CLUS_3                            49                              60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(12Q15) MUTATED       10     21     11     14
  AMP PEAK 17(12Q15) WILD-TYPE     31     29     23     15
D17V1, multiclass
        clus
vv       AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE
  CLUS_1                         10                           31
  CLUS_2                         21                           29
  CLUS_3                         11                           23
  CLUS_4                         14                           15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12Q15) MUTATED       13     23     20
  AMP PEAK 17(12Q15) WILD-TYPE     34     33     31
D17V2, multiclass
        clus
vv       AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE
  CLUS_1                         13                           34
  CLUS_2                         23                           33
  CLUS_3                         20                           31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(12Q15) MUTATED       16     30      8     20     80     24
  AMP PEAK 17(12Q15) WILD-TYPE     27     85     21     67     89     34
D17V3, multiclass
        clus
vv       AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE
  CLUS_1                         16                           27
  CLUS_2                         30                           85
  CLUS_3                          8                           21
  CLUS_4                         20                           67
  CLUS_5                         80                           89
  CLUS_6                         24                           34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(12Q15) MUTATED       29     45     24     32
  AMP PEAK 17(12Q15) WILD-TYPE     61     50     33     93
D17V4, multiclass
        clus
vv       AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE
  CLUS_1                         29                           61
  CLUS_2                         45                           50
  CLUS_3                         24                           33
  CLUS_4                         32                           93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(12Q15) MUTATED       39     34     40      6
  AMP PEAK 17(12Q15) WILD-TYPE     66     75     46     20
D17V5, multiclass
        clus
vv       AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE
  CLUS_1                         39                           66
  CLUS_2                         34                           75
  CLUS_3                         40                           46
  CLUS_4                          6                           20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(12Q15) MUTATED       31     30     18     18     10     12
  AMP PEAK 17(12Q15) WILD-TYPE     48     37     44     42     20     16
D17V6, multiclass
        clus
vv       AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE
  CLUS_1                         31                           48
  CLUS_2                         30                           37
  CLUS_3                         18                           44
  CLUS_4                         18                           42
  CLUS_5                         10                           20
  CLUS_6                         12                           16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(12Q15) MUTATED       27     69     54     26
  AMP PEAK 17(12Q15) WILD-TYPE     79     81    105     57
D17V7, multiclass
        clus
vv       AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE
  CLUS_1                         27                           79
  CLUS_2                         69                           81
  CLUS_3                         54                          105
  CLUS_4                         26                           57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12Q15) MUTATED       48     73     55
  AMP PEAK 17(12Q15) WILD-TYPE    130    116     76
D17V8, multiclass
        clus
vv       AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE
  CLUS_1                         48                          130
  CLUS_2                         73                          116
  CLUS_3                         55                           76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(12Q15) MUTATED       75     28     35     30
  AMP PEAK 17(12Q15) WILD-TYPE    109     59     89     50
D17V9, multiclass
        clus
vv       AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE
  CLUS_1                         75                          109
  CLUS_2                         28                           59
  CLUS_3                         35                           89
  CLUS_4                         30                           50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(12Q15) MUTATED       36     43     67     22
  AMP PEAK 17(12Q15) WILD-TYPE     53     75    132     47
D17V10, multiclass
        clus
vv       AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE
  CLUS_1                         36                           53
  CLUS_2                         43                           75
  CLUS_3                         67                          132
  CLUS_4                         22                           47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(12Q15) MUTATED       20     42     16     38
  AMP PEAK 17(12Q15) WILD-TYPE     41     73     50     54
D17V11, multiclass
        clus
vv       AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE
  CLUS_1                         20                           41
  CLUS_2                         42                           73
  CLUS_3                         16                           50
  CLUS_4                         38                           54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12Q15) MUTATED        8     72     36
  AMP PEAK 17(12Q15) WILD-TYPE     29    116     73
D17V12, multiclass
        clus
vv       AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE
  CLUS_1                          8                           29
  CLUS_2                         72                          116
  CLUS_3                         36                           73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(13Q34) MUTATED        7     10      5      5
  AMP PEAK 18(13Q34) WILD-TYPE     34     40     29     24
D18V1, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                          7                           34
  CLUS_2                         10                           40
  CLUS_3                          5                           29
  CLUS_4                          5                           24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(13Q34) MUTATED        7     10     10
  AMP PEAK 18(13Q34) WILD-TYPE     40     46     41
D18V2, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                          7                           40
  CLUS_2                         10                           46
  CLUS_3                         10                           41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(13Q34) MUTATED       10     14     11      8     33     15
  AMP PEAK 18(13Q34) WILD-TYPE     33    101     18     79    136     43
D18V3, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                         10                           33
  CLUS_2                         14                          101
  CLUS_3                         11                           18
  CLUS_4                          8                           79
  CLUS_5                         33                          136
  CLUS_6                         15                           43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(13Q34) MUTATED       21     14     12     23
  AMP PEAK 18(13Q34) WILD-TYPE     69     81     45    102
D18V4, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                         21                           69
  CLUS_2                         14                           81
  CLUS_3                         12                           45
  CLUS_4                         23                          102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(13Q34) MUTATED       18     27     14      2
  AMP PEAK 18(13Q34) WILD-TYPE     87     82     72     24
D18V5, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                         18                           87
  CLUS_2                         27                           82
  CLUS_3                         14                           72
  CLUS_4                          2                           24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(13Q34) MUTATED       13      8     19     11      5      5
  AMP PEAK 18(13Q34) WILD-TYPE     66     59     43     49     25     23
D18V6, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                         13                           66
  CLUS_2                          8                           59
  CLUS_3                         19                           43
  CLUS_4                         11                           49
  CLUS_5                          5                           25
  CLUS_6                          5                           23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(13Q34) MUTATED       19     25     34     13
  AMP PEAK 18(13Q34) WILD-TYPE     87    125    125     70
D18V7, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                         19                           87
  CLUS_2                         25                          125
  CLUS_3                         34                          125
  CLUS_4                         13                           70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(13Q34) MUTATED       27     32     32
  AMP PEAK 18(13Q34) WILD-TYPE    151    157     99
D18V8, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                         27                          151
  CLUS_2                         32                          157
  CLUS_3                         32                           99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(13Q34) MUTATED       41     14     21     10
  AMP PEAK 18(13Q34) WILD-TYPE    143     73    103     70
D18V9, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                         41                          143
  CLUS_2                         14                           73
  CLUS_3                         21                          103
  CLUS_4                         10                           70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(13Q34) MUTATED        8     27     41     10
  AMP PEAK 18(13Q34) WILD-TYPE     81     91    158     59
D18V10, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                          8                           81
  CLUS_2                         27                           91
  CLUS_3                         41                          158
  CLUS_4                         10                           59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(13Q34) MUTATED       11     23     12     16
  AMP PEAK 18(13Q34) WILD-TYPE     50     92     54     76
D18V11, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                         11                           50
  CLUS_2                         23                           92
  CLUS_3                         12                           54
  CLUS_4                         16                           76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(13Q34) MUTATED        9     33     20
  AMP PEAK 18(13Q34) WILD-TYPE     28    155     89
D18V12, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                          9                           28
  CLUS_2                         33                          155
  CLUS_3                         20                           89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(14Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(14Q13.3) MUTATED       18     14     10      9
  AMP PEAK 19(14Q13.3) WILD-TYPE     23     36     24     20
D19V1, multiclass
        clus
vv       AMP PEAK 19(14Q13.3) MUTATED AMP PEAK 19(14Q13.3) WILD-TYPE
  CLUS_1                           18                             23
  CLUS_2                           14                             36
  CLUS_3                           10                             24
  CLUS_4                            9                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(14Q13.3) MUTATED       23     15     13
  AMP PEAK 19(14Q13.3) WILD-TYPE     24     41     38
D19V2, multiclass
        clus
vv       AMP PEAK 19(14Q13.3) MUTATED AMP PEAK 19(14Q13.3) WILD-TYPE
  CLUS_1                           23                             24
  CLUS_2                           15                             41
  CLUS_3                           13                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(14Q13.3) MUTATED       35     33     12     14     50     15
  AMP PEAK 19(14Q13.3) WILD-TYPE      8     82     17     73    119     43
D19V3, multiclass
        clus
vv       AMP PEAK 19(14Q13.3) MUTATED AMP PEAK 19(14Q13.3) WILD-TYPE
  CLUS_1                           35                              8
  CLUS_2                           33                             82
  CLUS_3                           12                             17
  CLUS_4                           14                             73
  CLUS_5                           50                            119
  CLUS_6                           15                             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(14Q13.3) MUTATED       28     36     15     36
  AMP PEAK 19(14Q13.3) WILD-TYPE     62     59     42     89
D19V4, multiclass
        clus
vv       AMP PEAK 19(14Q13.3) MUTATED AMP PEAK 19(14Q13.3) WILD-TYPE
  CLUS_1                           28                             62
  CLUS_2                           36                             59
  CLUS_3                           15                             42
  CLUS_4                           36                             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(14Q13.3) MUTATED       31     42     22      8
  AMP PEAK 19(14Q13.3) WILD-TYPE     74     67     64     18
D19V5, multiclass
        clus
vv       AMP PEAK 19(14Q13.3) MUTATED AMP PEAK 19(14Q13.3) WILD-TYPE
  CLUS_1                           31                             74
  CLUS_2                           42                             67
  CLUS_3                           22                             64
  CLUS_4                            8                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(14Q13.3) MUTATED       20     19     24     24      8      8
  AMP PEAK 19(14Q13.3) WILD-TYPE     59     48     38     36     22     20
D19V6, multiclass
        clus
vv       AMP PEAK 19(14Q13.3) MUTATED AMP PEAK 19(14Q13.3) WILD-TYPE
  CLUS_1                           20                             59
  CLUS_2                           19                             48
  CLUS_3                           24                             38
  CLUS_4                           24                             36
  CLUS_5                            8                             22
  CLUS_6                            8                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(14Q13.3) MUTATED       43     48     40     28
  AMP PEAK 19(14Q13.3) WILD-TYPE     63    102    119     55
D19V7, multiclass
        clus
vv       AMP PEAK 19(14Q13.3) MUTATED AMP PEAK 19(14Q13.3) WILD-TYPE
  CLUS_1                           43                             63
  CLUS_2                           48                            102
  CLUS_3                           40                            119
  CLUS_4                           28                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(14Q13.3) MUTATED       73     56     30
  AMP PEAK 19(14Q13.3) WILD-TYPE    105    133    101
D19V8, multiclass
        clus
vv       AMP PEAK 19(14Q13.3) MUTATED AMP PEAK 19(14Q13.3) WILD-TYPE
  CLUS_1                           73                            105
  CLUS_2                           56                            133
  CLUS_3                           30                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(14Q13.3) MUTATED       75     26     38     15
  AMP PEAK 19(14Q13.3) WILD-TYPE    109     61     86     65
D19V9, multiclass
        clus
vv       AMP PEAK 19(14Q13.3) MUTATED AMP PEAK 19(14Q13.3) WILD-TYPE
  CLUS_1                           75                            109
  CLUS_2                           26                             61
  CLUS_3                           38                             86
  CLUS_4                           15                             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(14Q13.3) MUTATED       20     37     71     26
  AMP PEAK 19(14Q13.3) WILD-TYPE     69     81    128     43
D19V10, multiclass
        clus
vv       AMP PEAK 19(14Q13.3) MUTATED AMP PEAK 19(14Q13.3) WILD-TYPE
  CLUS_1                           20                             69
  CLUS_2                           37                             81
  CLUS_3                           71                            128
  CLUS_4                           26                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(14Q13.3) MUTATED       23     35     14     33
  AMP PEAK 19(14Q13.3) WILD-TYPE     38     80     52     59
D19V11, multiclass
        clus
vv       AMP PEAK 19(14Q13.3) MUTATED AMP PEAK 19(14Q13.3) WILD-TYPE
  CLUS_1                           23                             38
  CLUS_2                           35                             80
  CLUS_3                           14                             52
  CLUS_4                           33                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(14Q13.3) MUTATED       12     60     33
  AMP PEAK 19(14Q13.3) WILD-TYPE     25    128     76
D19V12, multiclass
        clus
vv       AMP PEAK 19(14Q13.3) MUTATED AMP PEAK 19(14Q13.3) WILD-TYPE
  CLUS_1                           12                             25
  CLUS_2                           60                            128
  CLUS_3                           33                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(14Q32.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(14Q32.33) MUTATED       19     14      7      9
  AMP PEAK 20(14Q32.33) WILD-TYPE     22     36     27     20
D20V1, multiclass
        clus
vv       AMP PEAK 20(14Q32.33) MUTATED AMP PEAK 20(14Q32.33) WILD-TYPE
  CLUS_1                            19                              22
  CLUS_2                            14                              36
  CLUS_3                             7                              27
  CLUS_4                             9                              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(14Q32.33) MUTATED       22     17     10
  AMP PEAK 20(14Q32.33) WILD-TYPE     25     39     41
D20V2, multiclass
        clus
vv       AMP PEAK 20(14Q32.33) MUTATED AMP PEAK 20(14Q32.33) WILD-TYPE
  CLUS_1                            22                              25
  CLUS_2                            17                              39
  CLUS_3                            10                              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(14Q32.33) MUTATED       33     28     13     11     59     14
  AMP PEAK 20(14Q32.33) WILD-TYPE     10     87     16     76    110     44
D20V3, multiclass
        clus
vv       AMP PEAK 20(14Q32.33) MUTATED AMP PEAK 20(14Q32.33) WILD-TYPE
  CLUS_1                            33                              10
  CLUS_2                            28                              87
  CLUS_3                            13                              16
  CLUS_4                            11                              76
  CLUS_5                            59                             110
  CLUS_6                            14                              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(14Q32.33) MUTATED       32     47     13     27
  AMP PEAK 20(14Q32.33) WILD-TYPE     58     48     44     98
D20V4, multiclass
        clus
vv       AMP PEAK 20(14Q32.33) MUTATED AMP PEAK 20(14Q32.33) WILD-TYPE
  CLUS_1                            32                              58
  CLUS_2                            47                              48
  CLUS_3                            13                              44
  CLUS_4                            27                              98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(14Q32.33) MUTATED       25     44     25     12
  AMP PEAK 20(14Q32.33) WILD-TYPE     80     65     61     14
D20V5, multiclass
        clus
vv       AMP PEAK 20(14Q32.33) MUTATED AMP PEAK 20(14Q32.33) WILD-TYPE
  CLUS_1                            25                              80
  CLUS_2                            44                              65
  CLUS_3                            25                              61
  CLUS_4                            12                              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(14Q32.33) MUTATED       21     17     26     25     10      7
  AMP PEAK 20(14Q32.33) WILD-TYPE     58     50     36     35     20     21
D20V6, multiclass
        clus
vv       AMP PEAK 20(14Q32.33) MUTATED AMP PEAK 20(14Q32.33) WILD-TYPE
  CLUS_1                            21                              58
  CLUS_2                            17                              50
  CLUS_3                            26                              36
  CLUS_4                            25                              35
  CLUS_5                            10                              20
  CLUS_6                             7                              21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(14Q32.33) MUTATED       45     58     38     17
  AMP PEAK 20(14Q32.33) WILD-TYPE     61     92    121     66
D20V7, multiclass
        clus
vv       AMP PEAK 20(14Q32.33) MUTATED AMP PEAK 20(14Q32.33) WILD-TYPE
  CLUS_1                            45                              61
  CLUS_2                            58                              92
  CLUS_3                            38                             121
  CLUS_4                            17                              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(14Q32.33) MUTATED       66     68     24
  AMP PEAK 20(14Q32.33) WILD-TYPE    112    121    107
D20V8, multiclass
        clus
vv       AMP PEAK 20(14Q32.33) MUTATED AMP PEAK 20(14Q32.33) WILD-TYPE
  CLUS_1                            66                             112
  CLUS_2                            68                             121
  CLUS_3                            24                             107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(14Q32.33) MUTATED       66     26     34     25
  AMP PEAK 20(14Q32.33) WILD-TYPE    118     61     90     55
D20V9, multiclass
        clus
vv       AMP PEAK 20(14Q32.33) MUTATED AMP PEAK 20(14Q32.33) WILD-TYPE
  CLUS_1                            66                             118
  CLUS_2                            26                              61
  CLUS_3                            34                              90
  CLUS_4                            25                              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(14Q32.33) MUTATED       30     35     69     17
  AMP PEAK 20(14Q32.33) WILD-TYPE     59     83    130     52
D20V10, multiclass
        clus
vv       AMP PEAK 20(14Q32.33) MUTATED AMP PEAK 20(14Q32.33) WILD-TYPE
  CLUS_1                            30                              59
  CLUS_2                            35                              83
  CLUS_3                            69                             130
  CLUS_4                            17                              52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(14Q32.33) MUTATED       22     35     10     38
  AMP PEAK 20(14Q32.33) WILD-TYPE     39     80     56     54
D20V11, multiclass
        clus
vv       AMP PEAK 20(14Q32.33) MUTATED AMP PEAK 20(14Q32.33) WILD-TYPE
  CLUS_1                            22                              39
  CLUS_2                            35                              80
  CLUS_3                            10                              56
  CLUS_4                            38                              54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(14Q32.33) MUTATED       14     60     31
  AMP PEAK 20(14Q32.33) WILD-TYPE     23    128     78
D20V12, multiclass
        clus
vv       AMP PEAK 20(14Q32.33) MUTATED AMP PEAK 20(14Q32.33) WILD-TYPE
  CLUS_1                            14                              23
  CLUS_2                            60                             128
  CLUS_3                            31                              78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(15Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(15Q26.3) MUTATED       13     25     11     10
  AMP PEAK 21(15Q26.3) WILD-TYPE     28     25     23     19
D21V1, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                           13                             28
  CLUS_2                           25                             25
  CLUS_3                           11                             23
  CLUS_4                           10                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(15Q26.3) MUTATED       17     28     14
  AMP PEAK 21(15Q26.3) WILD-TYPE     30     28     37
D21V2, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                           17                             30
  CLUS_2                           28                             28
  CLUS_3                           14                             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(15Q26.3) MUTATED        8     23     15     32     83     18
  AMP PEAK 21(15Q26.3) WILD-TYPE     35     92     14     55     86     40
D21V3, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                            8                             35
  CLUS_2                           23                             92
  CLUS_3                           15                             14
  CLUS_4                           32                             55
  CLUS_5                           83                             86
  CLUS_6                           18                             40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(15Q26.3) MUTATED       33     43     25     27
  AMP PEAK 21(15Q26.3) WILD-TYPE     57     52     32     98
D21V4, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                           33                             57
  CLUS_2                           43                             52
  CLUS_3                           25                             32
  CLUS_4                           27                             98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(15Q26.3) MUTATED       33     41     38     11
  AMP PEAK 21(15Q26.3) WILD-TYPE     72     68     48     15
D21V5, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                           33                             72
  CLUS_2                           41                             68
  CLUS_3                           38                             48
  CLUS_4                           11                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(15Q26.3) MUTATED       22     27     22     29     12     11
  AMP PEAK 21(15Q26.3) WILD-TYPE     57     40     40     31     18     17
D21V6, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                           22                             57
  CLUS_2                           27                             40
  CLUS_3                           22                             40
  CLUS_4                           29                             31
  CLUS_5                           12                             18
  CLUS_6                           11                             17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(15Q26.3) MUTATED       24     76     52     24
  AMP PEAK 21(15Q26.3) WILD-TYPE     82     74    107     59
D21V7, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                           24                             82
  CLUS_2                           76                             74
  CLUS_3                           52                            107
  CLUS_4                           24                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(15Q26.3) MUTATED       57     84     35
  AMP PEAK 21(15Q26.3) WILD-TYPE    121    105     96
D21V8, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                           57                            121
  CLUS_2                           84                            105
  CLUS_3                           35                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(15Q26.3) MUTATED       65     37     31     40
  AMP PEAK 21(15Q26.3) WILD-TYPE    119     50     93     40
D21V9, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                           65                            119
  CLUS_2                           37                             50
  CLUS_3                           31                             93
  CLUS_4                           40                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(15Q26.3) MUTATED       44     39     74     16
  AMP PEAK 21(15Q26.3) WILD-TYPE     45     79    125     53
D21V10, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                           44                             45
  CLUS_2                           39                             79
  CLUS_3                           74                            125
  CLUS_4                           16                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(15Q26.3) MUTATED       15     47     12     41
  AMP PEAK 21(15Q26.3) WILD-TYPE     46     68     54     51
D21V11, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                           15                             46
  CLUS_2                           47                             68
  CLUS_3                           12                             54
  CLUS_4                           41                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(15Q26.3) MUTATED       12     77     26
  AMP PEAK 21(15Q26.3) WILD-TYPE     25    111     83
D21V12, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                           12                             25
  CLUS_2                           77                            111
  CLUS_3                           26                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(17Q25.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(17Q25.1) MUTATED       18     31     10     20
  AMP PEAK 22(17Q25.1) WILD-TYPE     23     19     24      9
D22V1, multiclass
        clus
vv       AMP PEAK 22(17Q25.1) MUTATED AMP PEAK 22(17Q25.1) WILD-TYPE
  CLUS_1                           18                             23
  CLUS_2                           31                             19
  CLUS_3                           10                             24
  CLUS_4                           20                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(17Q25.1) MUTATED       24     34     21
  AMP PEAK 22(17Q25.1) WILD-TYPE     23     22     30
D22V2, multiclass
        clus
vv       AMP PEAK 22(17Q25.1) MUTATED AMP PEAK 22(17Q25.1) WILD-TYPE
  CLUS_1                           24                             23
  CLUS_2                           34                             22
  CLUS_3                           21                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(17Q25.1) MUTATED       22     27      8     33    113     33
  AMP PEAK 22(17Q25.1) WILD-TYPE     21     88     21     54     56     25
D22V3, multiclass
        clus
vv       AMP PEAK 22(17Q25.1) MUTATED AMP PEAK 22(17Q25.1) WILD-TYPE
  CLUS_1                           22                             21
  CLUS_2                           27                             88
  CLUS_3                            8                             21
  CLUS_4                           33                             54
  CLUS_5                          113                             56
  CLUS_6                           33                             25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(17Q25.1) MUTATED       41     61     28     37
  AMP PEAK 22(17Q25.1) WILD-TYPE     49     34     29     88
D22V4, multiclass
        clus
vv       AMP PEAK 22(17Q25.1) MUTATED AMP PEAK 22(17Q25.1) WILD-TYPE
  CLUS_1                           41                             49
  CLUS_2                           61                             34
  CLUS_3                           28                             29
  CLUS_4                           37                             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(17Q25.1) MUTATED       41     47     56      8
  AMP PEAK 22(17Q25.1) WILD-TYPE     64     62     30     18
D22V5, multiclass
        clus
vv       AMP PEAK 22(17Q25.1) MUTATED AMP PEAK 22(17Q25.1) WILD-TYPE
  CLUS_1                           41                             64
  CLUS_2                           47                             62
  CLUS_3                           56                             30
  CLUS_4                            8                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(17Q25.1) MUTATED       36     34     25     33     11     13
  AMP PEAK 22(17Q25.1) WILD-TYPE     43     33     37     27     19     15
D22V6, multiclass
        clus
vv       AMP PEAK 22(17Q25.1) MUTATED AMP PEAK 22(17Q25.1) WILD-TYPE
  CLUS_1                           36                             43
  CLUS_2                           34                             33
  CLUS_3                           25                             37
  CLUS_4                           33                             27
  CLUS_5                           11                             19
  CLUS_6                           13                             15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(17Q25.1) MUTATED       40     95     71     28
  AMP PEAK 22(17Q25.1) WILD-TYPE     66     55     88     55
D22V7, multiclass
        clus
vv       AMP PEAK 22(17Q25.1) MUTATED AMP PEAK 22(17Q25.1) WILD-TYPE
  CLUS_1                           40                             66
  CLUS_2                           95                             55
  CLUS_3                           71                             88
  CLUS_4                           28                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(17Q25.1) MUTATED       67    115     52
  AMP PEAK 22(17Q25.1) WILD-TYPE    111     74     79
D22V8, multiclass
        clus
vv       AMP PEAK 22(17Q25.1) MUTATED AMP PEAK 22(17Q25.1) WILD-TYPE
  CLUS_1                           67                            111
  CLUS_2                          115                             74
  CLUS_3                           52                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(17Q25.1) MUTATED       99     45     39     40
  AMP PEAK 22(17Q25.1) WILD-TYPE     85     42     85     40
D22V9, multiclass
        clus
vv       AMP PEAK 22(17Q25.1) MUTATED AMP PEAK 22(17Q25.1) WILD-TYPE
  CLUS_1                           99                             85
  CLUS_2                           45                             42
  CLUS_3                           39                             85
  CLUS_4                           40                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(17Q25.1) MUTATED       53     51     97     22
  AMP PEAK 22(17Q25.1) WILD-TYPE     36     67    102     47
D22V10, multiclass
        clus
vv       AMP PEAK 22(17Q25.1) MUTATED AMP PEAK 22(17Q25.1) WILD-TYPE
  CLUS_1                           53                             36
  CLUS_2                           51                             67
  CLUS_3                           97                            102
  CLUS_4                           22                             47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(17Q25.1) MUTATED       25     62     17     50
  AMP PEAK 22(17Q25.1) WILD-TYPE     36     53     49     42
D22V11, multiclass
        clus
vv       AMP PEAK 22(17Q25.1) MUTATED AMP PEAK 22(17Q25.1) WILD-TYPE
  CLUS_1                           25                             36
  CLUS_2                           62                             53
  CLUS_3                           17                             49
  CLUS_4                           50                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(17Q25.1) MUTATED       14     99     41
  AMP PEAK 22(17Q25.1) WILD-TYPE     23     89     68
D22V12, multiclass
        clus
vv       AMP PEAK 22(17Q25.1) MUTATED AMP PEAK 22(17Q25.1) WILD-TYPE
  CLUS_1                           14                             23
  CLUS_2                           99                             89
  CLUS_3                           41                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(18P11.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(18P11.32) MUTATED       12     26      9      9
  AMP PEAK 23(18P11.32) WILD-TYPE     29     24     25     20
D23V1, multiclass
        clus
vv       AMP PEAK 23(18P11.32) MUTATED AMP PEAK 23(18P11.32) WILD-TYPE
  CLUS_1                            12                              29
  CLUS_2                            26                              24
  CLUS_3                             9                              25
  CLUS_4                             9                              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(18P11.32) MUTATED       13     30     13
  AMP PEAK 23(18P11.32) WILD-TYPE     34     26     38
D23V2, multiclass
        clus
vv       AMP PEAK 23(18P11.32) MUTATED AMP PEAK 23(18P11.32) WILD-TYPE
  CLUS_1                            13                              34
  CLUS_2                            30                              26
  CLUS_3                            13                              38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(18P11.32) MUTATED       19     23     10     20     86     21
  AMP PEAK 23(18P11.32) WILD-TYPE     24     92     19     67     83     37
D23V3, multiclass
        clus
vv       AMP PEAK 23(18P11.32) MUTATED AMP PEAK 23(18P11.32) WILD-TYPE
  CLUS_1                            19                              24
  CLUS_2                            23                              92
  CLUS_3                            10                              19
  CLUS_4                            20                              67
  CLUS_5                            86                              83
  CLUS_6                            21                              37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(18P11.32) MUTATED       39     48     19     26
  AMP PEAK 23(18P11.32) WILD-TYPE     51     47     38     99
D23V4, multiclass
        clus
vv       AMP PEAK 23(18P11.32) MUTATED AMP PEAK 23(18P11.32) WILD-TYPE
  CLUS_1                            39                              51
  CLUS_2                            48                              47
  CLUS_3                            19                              38
  CLUS_4                            26                              99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(18P11.32) MUTATED       34     38     39     14
  AMP PEAK 23(18P11.32) WILD-TYPE     71     71     47     12
D23V5, multiclass
        clus
vv       AMP PEAK 23(18P11.32) MUTATED AMP PEAK 23(18P11.32) WILD-TYPE
  CLUS_1                            34                              71
  CLUS_2                            38                              71
  CLUS_3                            39                              47
  CLUS_4                            14                              12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(18P11.32) MUTATED       29     22     21     33      9     11
  AMP PEAK 23(18P11.32) WILD-TYPE     50     45     41     27     21     17
D23V6, multiclass
        clus
vv       AMP PEAK 23(18P11.32) MUTATED AMP PEAK 23(18P11.32) WILD-TYPE
  CLUS_1                            29                              50
  CLUS_2                            22                              45
  CLUS_3                            21                              41
  CLUS_4                            33                              27
  CLUS_5                             9                              21
  CLUS_6                            11                              17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(18P11.32) MUTATED       34     68     54     22
  AMP PEAK 23(18P11.32) WILD-TYPE     72     82    105     61
D23V7, multiclass
        clus
vv       AMP PEAK 23(18P11.32) MUTATED AMP PEAK 23(18P11.32) WILD-TYPE
  CLUS_1                            34                              72
  CLUS_2                            68                              82
  CLUS_3                            54                             105
  CLUS_4                            22                              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(18P11.32) MUTATED       50     86     42
  AMP PEAK 23(18P11.32) WILD-TYPE    128    103     89
D23V8, multiclass
        clus
vv       AMP PEAK 23(18P11.32) MUTATED AMP PEAK 23(18P11.32) WILD-TYPE
  CLUS_1                            50                             128
  CLUS_2                            86                             103
  CLUS_3                            42                              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(18P11.32) MUTATED       72     38     28     33
  AMP PEAK 23(18P11.32) WILD-TYPE    112     49     96     47
D23V9, multiclass
        clus
vv       AMP PEAK 23(18P11.32) MUTATED AMP PEAK 23(18P11.32) WILD-TYPE
  CLUS_1                            72                             112
  CLUS_2                            38                              49
  CLUS_3                            28                              96
  CLUS_4                            33                              47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(18P11.32) MUTATED       36     39     79     17
  AMP PEAK 23(18P11.32) WILD-TYPE     53     79    120     52
D23V10, multiclass
        clus
vv       AMP PEAK 23(18P11.32) MUTATED AMP PEAK 23(18P11.32) WILD-TYPE
  CLUS_1                            36                              53
  CLUS_2                            39                              79
  CLUS_3                            79                             120
  CLUS_4                            17                              52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(18P11.32) MUTATED       18     46     15     39
  AMP PEAK 23(18P11.32) WILD-TYPE     43     69     51     53
D23V11, multiclass
        clus
vv       AMP PEAK 23(18P11.32) MUTATED AMP PEAK 23(18P11.32) WILD-TYPE
  CLUS_1                            18                              43
  CLUS_2                            46                              69
  CLUS_3                            15                              51
  CLUS_4                            39                              53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(18P11.32) MUTATED        9     78     31
  AMP PEAK 23(18P11.32) WILD-TYPE     28    110     78
D23V12, multiclass
        clus
vv       AMP PEAK 23(18P11.32) MUTATED AMP PEAK 23(18P11.32) WILD-TYPE
  CLUS_1                             9                              28
  CLUS_2                            78                             110
  CLUS_3                            31                              78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(18Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(18Q11.2) MUTATED        9     24      5     15
  AMP PEAK 24(18Q11.2) WILD-TYPE     32     26     29     14
D24V1, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                            9                             32
  CLUS_2                           24                             26
  CLUS_3                            5                             29
  CLUS_4                           15                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(18Q11.2) MUTATED       10     27     16
  AMP PEAK 24(18Q11.2) WILD-TYPE     37     29     35
D24V2, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           10                             37
  CLUS_2                           27                             29
  CLUS_3                           16                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(18Q11.2) MUTATED       16     15      7     16     78     19
  AMP PEAK 24(18Q11.2) WILD-TYPE     27    100     22     71     91     39
D24V3, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           16                             27
  CLUS_2                           15                            100
  CLUS_3                            7                             22
  CLUS_4                           16                             71
  CLUS_5                           78                             91
  CLUS_6                           19                             39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(18Q11.2) MUTATED       24     49     16     18
  AMP PEAK 24(18Q11.2) WILD-TYPE     66     46     41    107
D24V4, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           24                             66
  CLUS_2                           49                             46
  CLUS_3                           16                             41
  CLUS_4                           18                            107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(18Q11.2) MUTATED       31     26     37      5
  AMP PEAK 24(18Q11.2) WILD-TYPE     74     83     49     21
D24V5, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           31                             74
  CLUS_2                           26                             83
  CLUS_3                           37                             49
  CLUS_4                            5                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(18Q11.2) MUTATED       26     20     14     23      7      9
  AMP PEAK 24(18Q11.2) WILD-TYPE     53     47     48     37     23     19
D24V6, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           26                             53
  CLUS_2                           20                             47
  CLUS_3                           14                             48
  CLUS_4                           23                             37
  CLUS_5                            7                             23
  CLUS_6                            9                             19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(18Q11.2) MUTATED       25     64     52      9
  AMP PEAK 24(18Q11.2) WILD-TYPE     81     86    107     74
D24V7, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           25                             81
  CLUS_2                           64                             86
  CLUS_3                           52                            107
  CLUS_4                            9                             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(18Q11.2) MUTATED       35     77     38
  AMP PEAK 24(18Q11.2) WILD-TYPE    143    112     93
D24V8, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           35                            143
  CLUS_2                           77                            112
  CLUS_3                           38                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(18Q11.2) MUTATED       64     26     22     31
  AMP PEAK 24(18Q11.2) WILD-TYPE    120     61    102     49
D24V9, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           64                            120
  CLUS_2                           26                             61
  CLUS_3                           22                            102
  CLUS_4                           31                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(18Q11.2) MUTATED       38     32     62     11
  AMP PEAK 24(18Q11.2) WILD-TYPE     51     86    137     58
D24V10, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           38                             51
  CLUS_2                           32                             86
  CLUS_3                           62                            137
  CLUS_4                           11                             58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(18Q11.2) MUTATED       15     40     11     28
  AMP PEAK 24(18Q11.2) WILD-TYPE     46     75     55     64
D24V11, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           15                             46
  CLUS_2                           40                             75
  CLUS_3                           11                             55
  CLUS_4                           28                             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(18Q11.2) MUTATED        6     62     26
  AMP PEAK 24(18Q11.2) WILD-TYPE     31    126     83
D24V12, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                            6                             31
  CLUS_2                           62                            126
  CLUS_3                           26                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(19Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(19Q12) MUTATED       16     25     12     14
  AMP PEAK 25(19Q12) WILD-TYPE     25     25     22     15
D25V1, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                         16                           25
  CLUS_2                         25                           25
  CLUS_3                         12                           22
  CLUS_4                         14                           15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19Q12) MUTATED       20     27     20
  AMP PEAK 25(19Q12) WILD-TYPE     27     29     31
D25V2, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                         20                           27
  CLUS_2                         27                           29
  CLUS_3                         20                           31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(19Q12) MUTATED       19     40      9     19    100     38
  AMP PEAK 25(19Q12) WILD-TYPE     24     75     20     68     69     20
D25V3, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                         19                           24
  CLUS_2                         40                           75
  CLUS_3                          9                           20
  CLUS_4                         19                           68
  CLUS_5                        100                           69
  CLUS_6                         38                           20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(19Q12) MUTATED       42     50     32     47
  AMP PEAK 25(19Q12) WILD-TYPE     48     45     25     78
D25V4, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                         42                           48
  CLUS_2                         50                           45
  CLUS_3                         32                           25
  CLUS_4                         47                           78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(19Q12) MUTATED       46     44     52     10
  AMP PEAK 25(19Q12) WILD-TYPE     59     65     34     16
D25V5, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                         46                           59
  CLUS_2                         44                           65
  CLUS_3                         52                           34
  CLUS_4                         10                           16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(19Q12) MUTATED       35     35     27     30     12     13
  AMP PEAK 25(19Q12) WILD-TYPE     44     32     35     30     18     15
D25V6, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                         35                           44
  CLUS_2                         35                           32
  CLUS_3                         27                           35
  CLUS_4                         30                           30
  CLUS_5                         12                           18
  CLUS_6                         13                           15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(19Q12) MUTATED       34     82     76     31
  AMP PEAK 25(19Q12) WILD-TYPE     72     68     83     52
D25V7, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                         34                           72
  CLUS_2                         82                           68
  CLUS_3                         76                           83
  CLUS_4                         31                           52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19Q12) MUTATED       67     96     60
  AMP PEAK 25(19Q12) WILD-TYPE    111     93     71
D25V8, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                         67                          111
  CLUS_2                         96                           93
  CLUS_3                         60                           71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(19Q12) MUTATED       93     45     41     38
  AMP PEAK 25(19Q12) WILD-TYPE     91     42     83     42
D25V9, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                         93                           91
  CLUS_2                         45                           42
  CLUS_3                         41                           83
  CLUS_4                         38                           42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(19Q12) MUTATED       45     54     91     27
  AMP PEAK 25(19Q12) WILD-TYPE     44     64    108     42
D25V10, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                         45                           44
  CLUS_2                         54                           64
  CLUS_3                         91                          108
  CLUS_4                         27                           42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(19Q12) MUTATED       29     53     19     51
  AMP PEAK 25(19Q12) WILD-TYPE     32     62     47     41
D25V11, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                         29                           32
  CLUS_2                         53                           62
  CLUS_3                         19                           47
  CLUS_4                         51                           41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19Q12) MUTATED       18     97     37
  AMP PEAK 25(19Q12) WILD-TYPE     19     91     72
D25V12, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                         18                           19
  CLUS_2                         97                           91
  CLUS_3                         37                           72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = AMP PEAK 26(19Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(19Q13.2) MUTATED       21     26     12     13
  AMP PEAK 26(19Q13.2) WILD-TYPE     20     24     22     16
D26V1, multiclass
        clus
vv       AMP PEAK 26(19Q13.2) MUTATED AMP PEAK 26(19Q13.2) WILD-TYPE
  CLUS_1                           21                             20
  CLUS_2                           26                             24
  CLUS_3                           12                             22
  CLUS_4                           13                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19Q13.2) MUTATED       24     29     19
  AMP PEAK 26(19Q13.2) WILD-TYPE     23     27     32
D26V2, multiclass
        clus
vv       AMP PEAK 26(19Q13.2) MUTATED AMP PEAK 26(19Q13.2) WILD-TYPE
  CLUS_1                           24                             23
  CLUS_2                           29                             27
  CLUS_3                           19                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(19Q13.2) MUTATED       21     41     10     20    100     42
  AMP PEAK 26(19Q13.2) WILD-TYPE     22     74     19     67     69     16
D26V3, multiclass
        clus
vv       AMP PEAK 26(19Q13.2) MUTATED AMP PEAK 26(19Q13.2) WILD-TYPE
  CLUS_1                           21                             22
  CLUS_2                           41                             74
  CLUS_3                           10                             19
  CLUS_4                           20                             67
  CLUS_5                          100                             69
  CLUS_6                           42                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(19Q13.2) MUTATED       41     50     33     50
  AMP PEAK 26(19Q13.2) WILD-TYPE     49     45     24     75
D26V4, multiclass
        clus
vv       AMP PEAK 26(19Q13.2) MUTATED AMP PEAK 26(19Q13.2) WILD-TYPE
  CLUS_1                           41                             49
  CLUS_2                           50                             45
  CLUS_3                           33                             24
  CLUS_4                           50                             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(19Q13.2) MUTATED       50     44     51     10
  AMP PEAK 26(19Q13.2) WILD-TYPE     55     65     35     16
D26V5, multiclass
        clus
vv       AMP PEAK 26(19Q13.2) MUTATED AMP PEAK 26(19Q13.2) WILD-TYPE
  CLUS_1                           50                             55
  CLUS_2                           44                             65
  CLUS_3                           51                             35
  CLUS_4                           10                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(19Q13.2) MUTATED       34     35     26     34     13     13
  AMP PEAK 26(19Q13.2) WILD-TYPE     45     32     36     26     17     15
D26V6, multiclass
        clus
vv       AMP PEAK 26(19Q13.2) MUTATED AMP PEAK 26(19Q13.2) WILD-TYPE
  CLUS_1                           34                             45
  CLUS_2                           35                             32
  CLUS_3                           26                             36
  CLUS_4                           34                             26
  CLUS_5                           13                             17
  CLUS_6                           13                             15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(19Q13.2) MUTATED       37     85     76     33
  AMP PEAK 26(19Q13.2) WILD-TYPE     69     65     83     50
D26V7, multiclass
        clus
vv       AMP PEAK 26(19Q13.2) MUTATED AMP PEAK 26(19Q13.2) WILD-TYPE
  CLUS_1                           37                             69
  CLUS_2                           85                             65
  CLUS_3                           76                             83
  CLUS_4                           33                             50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19Q13.2) MUTATED       71     97     63
  AMP PEAK 26(19Q13.2) WILD-TYPE    107     92     68
D26V8, multiclass
        clus
vv       AMP PEAK 26(19Q13.2) MUTATED AMP PEAK 26(19Q13.2) WILD-TYPE
  CLUS_1                           71                            107
  CLUS_2                           97                             92
  CLUS_3                           63                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(19Q13.2) MUTATED       91     48     46     42
  AMP PEAK 26(19Q13.2) WILD-TYPE     93     39     78     38
D26V9, multiclass
        clus
vv       AMP PEAK 26(19Q13.2) MUTATED AMP PEAK 26(19Q13.2) WILD-TYPE
  CLUS_1                           91                             93
  CLUS_2                           48                             39
  CLUS_3                           46                             78
  CLUS_4                           42                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(19Q13.2) MUTATED       47     53     98     29
  AMP PEAK 26(19Q13.2) WILD-TYPE     42     65    101     40
D26V10, multiclass
        clus
vv       AMP PEAK 26(19Q13.2) MUTATED AMP PEAK 26(19Q13.2) WILD-TYPE
  CLUS_1                           47                             42
  CLUS_2                           53                             65
  CLUS_3                           98                            101
  CLUS_4                           29                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(19Q13.2) MUTATED       31     52     24     51
  AMP PEAK 26(19Q13.2) WILD-TYPE     30     63     42     41
D26V11, multiclass
        clus
vv       AMP PEAK 26(19Q13.2) MUTATED AMP PEAK 26(19Q13.2) WILD-TYPE
  CLUS_1                           31                             30
  CLUS_2                           52                             63
  CLUS_3                           24                             42
  CLUS_4                           51                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19Q13.2) MUTATED       19    100     39
  AMP PEAK 26(19Q13.2) WILD-TYPE     18     88     70
D26V12, multiclass
        clus
vv       AMP PEAK 26(19Q13.2) MUTATED AMP PEAK 26(19Q13.2) WILD-TYPE
  CLUS_1                           19                             18
  CLUS_2                          100                             88
  CLUS_3                           39                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = AMP PEAK 27(20P12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(20P12.2) MUTATED       24     35     10     12
  AMP PEAK 27(20P12.2) WILD-TYPE     17     15     24     17
D27V1, multiclass
        clus
vv       AMP PEAK 27(20P12.2) MUTATED AMP PEAK 27(20P12.2) WILD-TYPE
  CLUS_1                           24                             17
  CLUS_2                           35                             15
  CLUS_3                           10                             24
  CLUS_4                           12                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(20P12.2) MUTATED       27     37     17
  AMP PEAK 27(20P12.2) WILD-TYPE     20     19     34
D27V2, multiclass
        clus
vv       AMP PEAK 27(20P12.2) MUTATED AMP PEAK 27(20P12.2) WILD-TYPE
  CLUS_1                           27                             20
  CLUS_2                           37                             19
  CLUS_3                           17                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(20P12.2) MUTATED       32     45     21     25    118     39
  AMP PEAK 27(20P12.2) WILD-TYPE     11     70      8     62     51     19
D27V3, multiclass
        clus
vv       AMP PEAK 27(20P12.2) MUTATED AMP PEAK 27(20P12.2) WILD-TYPE
  CLUS_1                           32                             11
  CLUS_2                           45                             70
  CLUS_3                           21                              8
  CLUS_4                           25                             62
  CLUS_5                          118                             51
  CLUS_6                           39                             19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(20P12.2) MUTATED       50     66     37     57
  AMP PEAK 27(20P12.2) WILD-TYPE     40     29     20     68
D27V4, multiclass
        clus
vv       AMP PEAK 27(20P12.2) MUTATED AMP PEAK 27(20P12.2) WILD-TYPE
  CLUS_1                           50                             40
  CLUS_2                           66                             29
  CLUS_3                           37                             20
  CLUS_4                           57                             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(20P12.2) MUTATED       53     54     54     17
  AMP PEAK 27(20P12.2) WILD-TYPE     52     55     32      9
D27V5, multiclass
        clus
vv       AMP PEAK 27(20P12.2) MUTATED AMP PEAK 27(20P12.2) WILD-TYPE
  CLUS_1                           53                             52
  CLUS_2                           54                             55
  CLUS_3                           54                             32
  CLUS_4                           17                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(20P12.2) MUTATED       41     38     36     36     16     11
  AMP PEAK 27(20P12.2) WILD-TYPE     38     29     26     24     14     17
D27V6, multiclass
        clus
vv       AMP PEAK 27(20P12.2) MUTATED AMP PEAK 27(20P12.2) WILD-TYPE
  CLUS_1                           41                             38
  CLUS_2                           38                             29
  CLUS_3                           36                             26
  CLUS_4                           36                             24
  CLUS_5                           16                             14
  CLUS_6                           11                             17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(20P12.2) MUTATED       52    101     86     40
  AMP PEAK 27(20P12.2) WILD-TYPE     54     49     73     43
D27V7, multiclass
        clus
vv       AMP PEAK 27(20P12.2) MUTATED AMP PEAK 27(20P12.2) WILD-TYPE
  CLUS_1                           52                             54
  CLUS_2                          101                             49
  CLUS_3                           86                             73
  CLUS_4                           40                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(20P12.2) MUTATED       94    121     64
  AMP PEAK 27(20P12.2) WILD-TYPE     84     68     67
D27V8, multiclass
        clus
vv       AMP PEAK 27(20P12.2) MUTATED AMP PEAK 27(20P12.2) WILD-TYPE
  CLUS_1                           94                             84
  CLUS_2                          121                             68
  CLUS_3                           64                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(20P12.2) MUTATED      104     52     58     51
  AMP PEAK 27(20P12.2) WILD-TYPE     80     35     66     29
D27V9, multiclass
        clus
vv       AMP PEAK 27(20P12.2) MUTATED AMP PEAK 27(20P12.2) WILD-TYPE
  CLUS_1                          104                             80
  CLUS_2                           52                             35
  CLUS_3                           58                             66
  CLUS_4                           51                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(20P12.2) MUTATED       54     61    111     39
  AMP PEAK 27(20P12.2) WILD-TYPE     35     57     88     30
D27V10, multiclass
        clus
vv       AMP PEAK 27(20P12.2) MUTATED AMP PEAK 27(20P12.2) WILD-TYPE
  CLUS_1                           54                             35
  CLUS_2                           61                             57
  CLUS_3                          111                             88
  CLUS_4                           39                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(20P12.2) MUTATED       36     71     29     57
  AMP PEAK 27(20P12.2) WILD-TYPE     25     44     37     35
D27V11, multiclass
        clus
vv       AMP PEAK 27(20P12.2) MUTATED AMP PEAK 27(20P12.2) WILD-TYPE
  CLUS_1                           36                             25
  CLUS_2                           71                             44
  CLUS_3                           29                             37
  CLUS_4                           57                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(20P12.2) MUTATED       21    112     60
  AMP PEAK 27(20P12.2) WILD-TYPE     16     76     49
D27V12, multiclass
        clus
vv       AMP PEAK 27(20P12.2) MUTATED AMP PEAK 27(20P12.2) WILD-TYPE
  CLUS_1                           21                             16
  CLUS_2                          112                             76
  CLUS_3                           60                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = AMP PEAK 28(20Q11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(20Q11.21) MUTATED       27     28     19     17
  AMP PEAK 28(20Q11.21) WILD-TYPE     14     22     15     12
D28V1, multiclass
        clus
vv       AMP PEAK 28(20Q11.21) MUTATED AMP PEAK 28(20Q11.21) WILD-TYPE
  CLUS_1                            27                              14
  CLUS_2                            28                              22
  CLUS_3                            19                              15
  CLUS_4                            17                              12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(20Q11.21) MUTATED       31     31     29
  AMP PEAK 28(20Q11.21) WILD-TYPE     16     25     22
D28V2, multiclass
        clus
vv       AMP PEAK 28(20Q11.21) MUTATED AMP PEAK 28(20Q11.21) WILD-TYPE
  CLUS_1                            31                              16
  CLUS_2                            31                              25
  CLUS_3                            29                              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(20Q11.21) MUTATED       40     56     24     27    113     46
  AMP PEAK 28(20Q11.21) WILD-TYPE      3     59      5     60     56     12
D28V3, multiclass
        clus
vv       AMP PEAK 28(20Q11.21) MUTATED AMP PEAK 28(20Q11.21) WILD-TYPE
  CLUS_1                            40                               3
  CLUS_2                            56                              59
  CLUS_3                            24                               5
  CLUS_4                            27                              60
  CLUS_5                           113                              56
  CLUS_6                            46                              12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(20Q11.21) MUTATED       56     65     41     63
  AMP PEAK 28(20Q11.21) WILD-TYPE     34     30     16     62
D28V4, multiclass
        clus
vv       AMP PEAK 28(20Q11.21) MUTATED AMP PEAK 28(20Q11.21) WILD-TYPE
  CLUS_1                            56                              34
  CLUS_2                            65                              30
  CLUS_3                            41                              16
  CLUS_4                            63                              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(20Q11.21) MUTATED       57     66     56     16
  AMP PEAK 28(20Q11.21) WILD-TYPE     48     43     30     10
D28V5, multiclass
        clus
vv       AMP PEAK 28(20Q11.21) MUTATED AMP PEAK 28(20Q11.21) WILD-TYPE
  CLUS_1                            57                              48
  CLUS_2                            66                              43
  CLUS_3                            56                              30
  CLUS_4                            16                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(20Q11.21) MUTATED       48     41     39     34     17     16
  AMP PEAK 28(20Q11.21) WILD-TYPE     31     26     23     26     13     12
D28V6, multiclass
        clus
vv       AMP PEAK 28(20Q11.21) MUTATED AMP PEAK 28(20Q11.21) WILD-TYPE
  CLUS_1                            48                              31
  CLUS_2                            41                              26
  CLUS_3                            39                              23
  CLUS_4                            34                              26
  CLUS_5                            17                              13
  CLUS_6                            16                              12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(20Q11.21) MUTATED       60     95    103     45
  AMP PEAK 28(20Q11.21) WILD-TYPE     46     55     56     38
D28V7, multiclass
        clus
vv       AMP PEAK 28(20Q11.21) MUTATED AMP PEAK 28(20Q11.21) WILD-TYPE
  CLUS_1                            60                              46
  CLUS_2                            95                              55
  CLUS_3                           103                              56
  CLUS_4                            45                              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(20Q11.21) MUTATED      109    116     78
  AMP PEAK 28(20Q11.21) WILD-TYPE     69     73     53
D28V8, multiclass
        clus
vv       AMP PEAK 28(20Q11.21) MUTATED AMP PEAK 28(20Q11.21) WILD-TYPE
  CLUS_1                           109                              69
  CLUS_2                           116                              73
  CLUS_3                            78                              53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(20Q11.21) MUTATED      114     58     66     53
  AMP PEAK 28(20Q11.21) WILD-TYPE     70     29     58     27
D28V9, multiclass
        clus
vv       AMP PEAK 28(20Q11.21) MUTATED AMP PEAK 28(20Q11.21) WILD-TYPE
  CLUS_1                           114                              70
  CLUS_2                            58                              29
  CLUS_3                            66                              58
  CLUS_4                            53                              27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(20Q11.21) MUTATED       52     69    131     39
  AMP PEAK 28(20Q11.21) WILD-TYPE     37     49     68     30
D28V10, multiclass
        clus
vv       AMP PEAK 28(20Q11.21) MUTATED AMP PEAK 28(20Q11.21) WILD-TYPE
  CLUS_1                            52                              37
  CLUS_2                            69                              49
  CLUS_3                           131                              68
  CLUS_4                            39                              30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(20Q11.21) MUTATED       39     72     30     65
  AMP PEAK 28(20Q11.21) WILD-TYPE     22     43     36     27
D28V11, multiclass
        clus
vv       AMP PEAK 28(20Q11.21) MUTATED AMP PEAK 28(20Q11.21) WILD-TYPE
  CLUS_1                            39                              22
  CLUS_2                            72                              43
  CLUS_3                            30                              36
  CLUS_4                            65                              27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(20Q11.21) MUTATED       25    122     59
  AMP PEAK 28(20Q11.21) WILD-TYPE     12     66     50
D28V12, multiclass
        clus
vv       AMP PEAK 28(20Q11.21) MUTATED AMP PEAK 28(20Q11.21) WILD-TYPE
  CLUS_1                            25                              12
  CLUS_2                           122                              66
  CLUS_3                            59                              50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = AMP PEAK 29(22Q11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(22Q11.21) MUTATED       22     30     13     12
  AMP PEAK 29(22Q11.21) WILD-TYPE     19     20     21     17
D29V1, multiclass
        clus
vv       AMP PEAK 29(22Q11.21) MUTATED AMP PEAK 29(22Q11.21) WILD-TYPE
  CLUS_1                            22                              19
  CLUS_2                            30                              20
  CLUS_3                            13                              21
  CLUS_4                            12                              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(22Q11.21) MUTATED       25     32     20
  AMP PEAK 29(22Q11.21) WILD-TYPE     22     24     31
D29V2, multiclass
        clus
vv       AMP PEAK 29(22Q11.21) MUTATED AMP PEAK 29(22Q11.21) WILD-TYPE
  CLUS_1                            25                              22
  CLUS_2                            32                              24
  CLUS_3                            20                              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 29(22Q11.21) MUTATED       23     40     28     21    105     39
  AMP PEAK 29(22Q11.21) WILD-TYPE     20     75      1     66     64     19
D29V3, multiclass
        clus
vv       AMP PEAK 29(22Q11.21) MUTATED AMP PEAK 29(22Q11.21) WILD-TYPE
  CLUS_1                            23                              20
  CLUS_2                            40                              75
  CLUS_3                            28                               1
  CLUS_4                            21                              66
  CLUS_5                           105                              64
  CLUS_6                            39                              19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(22Q11.21) MUTATED       49     66     32     45
  AMP PEAK 29(22Q11.21) WILD-TYPE     41     29     25     80
D29V4, multiclass
        clus
vv       AMP PEAK 29(22Q11.21) MUTATED AMP PEAK 29(22Q11.21) WILD-TYPE
  CLUS_1                            49                              41
  CLUS_2                            66                              29
  CLUS_3                            32                              25
  CLUS_4                            45                              80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(22Q11.21) MUTATED       49     48     53     15
  AMP PEAK 29(22Q11.21) WILD-TYPE     56     61     33     11
D29V5, multiclass
        clus
vv       AMP PEAK 29(22Q11.21) MUTATED AMP PEAK 29(22Q11.21) WILD-TYPE
  CLUS_1                            49                              56
  CLUS_2                            48                              61
  CLUS_3                            53                              33
  CLUS_4                            15                              11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 29(22Q11.21) MUTATED       35     34     33     34     13     16
  AMP PEAK 29(22Q11.21) WILD-TYPE     44     33     29     26     17     12
D29V6, multiclass
        clus
vv       AMP PEAK 29(22Q11.21) MUTATED AMP PEAK 29(22Q11.21) WILD-TYPE
  CLUS_1                            35                              44
  CLUS_2                            34                              33
  CLUS_3                            33                              29
  CLUS_4                            34                              26
  CLUS_5                            13                              17
  CLUS_6                            16                              12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(22Q11.21) MUTATED       50    100     72     32
  AMP PEAK 29(22Q11.21) WILD-TYPE     56     50     87     51
D29V7, multiclass
        clus
vv       AMP PEAK 29(22Q11.21) MUTATED AMP PEAK 29(22Q11.21) WILD-TYPE
  CLUS_1                            50                              56
  CLUS_2                           100                              50
  CLUS_3                            72                              87
  CLUS_4                            32                              51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(22Q11.21) MUTATED       97    110     47
  AMP PEAK 29(22Q11.21) WILD-TYPE     81     79     84
D29V8, multiclass
        clus
vv       AMP PEAK 29(22Q11.21) MUTATED AMP PEAK 29(22Q11.21) WILD-TYPE
  CLUS_1                            97                              81
  CLUS_2                           110                              79
  CLUS_3                            47                              84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(22Q11.21) MUTATED       92     52     60     40
  AMP PEAK 29(22Q11.21) WILD-TYPE     92     35     64     40
D29V9, multiclass
        clus
vv       AMP PEAK 29(22Q11.21) MUTATED AMP PEAK 29(22Q11.21) WILD-TYPE
  CLUS_1                            92                              92
  CLUS_2                            52                              35
  CLUS_3                            60                              64
  CLUS_4                            40                              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(22Q11.21) MUTATED       48     55    114     27
  AMP PEAK 29(22Q11.21) WILD-TYPE     41     63     85     42
D29V10, multiclass
        clus
vv       AMP PEAK 29(22Q11.21) MUTATED AMP PEAK 29(22Q11.21) WILD-TYPE
  CLUS_1                            48                              41
  CLUS_2                            55                              63
  CLUS_3                           114                              85
  CLUS_4                            27                              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(22Q11.21) MUTATED       33     58     25     54
  AMP PEAK 29(22Q11.21) WILD-TYPE     28     57     41     38
D29V11, multiclass
        clus
vv       AMP PEAK 29(22Q11.21) MUTATED AMP PEAK 29(22Q11.21) WILD-TYPE
  CLUS_1                            33                              28
  CLUS_2                            58                              57
  CLUS_3                            25                              41
  CLUS_4                            54                              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(22Q11.21) MUTATED       19    103     48
  AMP PEAK 29(22Q11.21) WILD-TYPE     18     85     61
D29V12, multiclass
        clus
vv       AMP PEAK 29(22Q11.21) MUTATED AMP PEAK 29(22Q11.21) WILD-TYPE
  CLUS_1                            19                              18
  CLUS_2                           103                              85
  CLUS_3                            48                              61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = AMP PEAK 30(XQ28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(XQ28) MUTATED       10     15      8      7
  AMP PEAK 30(XQ28) WILD-TYPE     31     35     26     22
D30V1, multiclass
        clus
vv       AMP PEAK 30(XQ28) MUTATED AMP PEAK 30(XQ28) WILD-TYPE
  CLUS_1                        10                          31
  CLUS_2                        15                          35
  CLUS_3                         8                          26
  CLUS_4                         7                          22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(XQ28) MUTATED       12     16     12
  AMP PEAK 30(XQ28) WILD-TYPE     35     40     39
D30V2, multiclass
        clus
vv       AMP PEAK 30(XQ28) MUTATED AMP PEAK 30(XQ28) WILD-TYPE
  CLUS_1                        12                          35
  CLUS_2                        16                          40
  CLUS_3                        12                          39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 30(XQ28) MUTATED       12     22      5     12     50     23
  AMP PEAK 30(XQ28) WILD-TYPE     31     93     24     75    119     35
D30V3, multiclass
        clus
vv       AMP PEAK 30(XQ28) MUTATED AMP PEAK 30(XQ28) WILD-TYPE
  CLUS_1                        12                          31
  CLUS_2                        22                          93
  CLUS_3                         5                          24
  CLUS_4                        12                          75
  CLUS_5                        50                         119
  CLUS_6                        23                          35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(XQ28) MUTATED       22     36     10     22
  AMP PEAK 30(XQ28) WILD-TYPE     68     59     47    103
D30V4, multiclass
        clus
vv       AMP PEAK 30(XQ28) MUTATED AMP PEAK 30(XQ28) WILD-TYPE
  CLUS_1                        22                          68
  CLUS_2                        36                          59
  CLUS_3                        10                          47
  CLUS_4                        22                         103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(XQ28) MUTATED       21     32     24      6
  AMP PEAK 30(XQ28) WILD-TYPE     84     77     62     20
D30V5, multiclass
        clus
vv       AMP PEAK 30(XQ28) MUTATED AMP PEAK 30(XQ28) WILD-TYPE
  CLUS_1                        21                          84
  CLUS_2                        32                          77
  CLUS_3                        24                          62
  CLUS_4                         6                          20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 30(XQ28) MUTATED       21     13     16     17      8      8
  AMP PEAK 30(XQ28) WILD-TYPE     58     54     46     43     22     20
D30V6, multiclass
        clus
vv       AMP PEAK 30(XQ28) MUTATED AMP PEAK 30(XQ28) WILD-TYPE
  CLUS_1                        21                          58
  CLUS_2                        13                          54
  CLUS_3                        16                          46
  CLUS_4                        17                          43
  CLUS_5                         8                          22
  CLUS_6                         8                          20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(XQ28) MUTATED       17     48     37     19
  AMP PEAK 30(XQ28) WILD-TYPE     89    102    122     64
D30V7, multiclass
        clus
vv       AMP PEAK 30(XQ28) MUTATED AMP PEAK 30(XQ28) WILD-TYPE
  CLUS_1                        17                          89
  CLUS_2                        48                         102
  CLUS_3                        37                         122
  CLUS_4                        19                          64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(XQ28) MUTATED       38     53     30
  AMP PEAK 30(XQ28) WILD-TYPE    140    136    101
D30V8, multiclass
        clus
vv       AMP PEAK 30(XQ28) MUTATED AMP PEAK 30(XQ28) WILD-TYPE
  CLUS_1                        38                         140
  CLUS_2                        53                         136
  CLUS_3                        30                         101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(XQ28) MUTATED       47     27     20     25
  AMP PEAK 30(XQ28) WILD-TYPE    137     60    104     55
D30V9, multiclass
        clus
vv       AMP PEAK 30(XQ28) MUTATED AMP PEAK 30(XQ28) WILD-TYPE
  CLUS_1                        47                         137
  CLUS_2                        27                          60
  CLUS_3                        20                         104
  CLUS_4                        25                          55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(XQ28) MUTATED       28     29     51     11
  AMP PEAK 30(XQ28) WILD-TYPE     61     89    148     58
D30V10, multiclass
        clus
vv       AMP PEAK 30(XQ28) MUTATED AMP PEAK 30(XQ28) WILD-TYPE
  CLUS_1                        28                          61
  CLUS_2                        29                          89
  CLUS_3                        51                         148
  CLUS_4                        11                          58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(XQ28) MUTATED       14     27     13     27
  AMP PEAK 30(XQ28) WILD-TYPE     47     88     53     65
D30V11, multiclass
        clus
vv       AMP PEAK 30(XQ28) MUTATED AMP PEAK 30(XQ28) WILD-TYPE
  CLUS_1                        14                          47
  CLUS_2                        27                          88
  CLUS_3                        13                          53
  CLUS_4                        27                          65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(XQ28) MUTATED       12     47     22
  AMP PEAK 30(XQ28) WILD-TYPE     25    141     87
D30V12, multiclass
        clus
vv       AMP PEAK 30(XQ28) MUTATED AMP PEAK 30(XQ28) WILD-TYPE
  CLUS_1                        12                          25
  CLUS_2                        47                         141
  CLUS_3                        22                          87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  1(1P36.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       12     39     13     10
  DEL PEAK  1(1P36.11) WILD-TYPE     29     11     21     19
D31V1, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           12                             29
  CLUS_2                           39                             11
  CLUS_3                           13                             21
  CLUS_4                           10                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       14     43     17
  DEL PEAK  1(1P36.11) WILD-TYPE     33     13     34
D31V2, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           14                             33
  CLUS_2                           43                             13
  CLUS_3                           17                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.11) MUTATED       26     24     16      9    140     13
  DEL PEAK  1(1P36.11) WILD-TYPE     17     91     13     78     29     45
D31V3, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           26                             17
  CLUS_2                           24                             91
  CLUS_3                           16                             13
  CLUS_4                            9                             78
  CLUS_5                          140                             29
  CLUS_6                           13                             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       28     70     37     26
  DEL PEAK  1(1P36.11) WILD-TYPE     62     25     20     99
D31V4, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           28                             62
  CLUS_2                           70                             25
  CLUS_3                           37                             20
  CLUS_4                           26                             99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       45     40     57     12
  DEL PEAK  1(1P36.11) WILD-TYPE     60     69     29     14
D31V5, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           45                             60
  CLUS_2                           40                             69
  CLUS_3                           57                             29
  CLUS_4                           12                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.11) MUTATED       41     36     21     36     11      9
  DEL PEAK  1(1P36.11) WILD-TYPE     38     31     41     24     19     19
D31V6, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           41                             38
  CLUS_2                           36                             31
  CLUS_3                           21                             41
  CLUS_4                           36                             24
  CLUS_5                           11                             19
  CLUS_6                            9                             19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       29    119     55     24
  DEL PEAK  1(1P36.11) WILD-TYPE     77     31    104     59
D31V7, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           29                             77
  CLUS_2                          119                             31
  CLUS_3                           55                            104
  CLUS_4                           24                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       46    140     41
  DEL PEAK  1(1P36.11) WILD-TYPE    132     49     90
D31V8, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           46                            132
  CLUS_2                          140                             49
  CLUS_3                           41                             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       94     33     32     57
  DEL PEAK  1(1P36.11) WILD-TYPE     90     54     92     23
D31V9, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           94                             90
  CLUS_2                           33                             54
  CLUS_3                           32                             92
  CLUS_4                           57                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       66     52     83     15
  DEL PEAK  1(1P36.11) WILD-TYPE     23     66    116     54
D31V10, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           66                             23
  CLUS_2                           52                             66
  CLUS_3                           83                            116
  CLUS_4                           15                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       17     59     13     55
  DEL PEAK  1(1P36.11) WILD-TYPE     44     56     53     37
D31V11, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           17                             44
  CLUS_2                           59                             56
  CLUS_3                           13                             53
  CLUS_4                           55                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED        8    100     36
  DEL PEAK  1(1P36.11) WILD-TYPE     29     88     73
D31V12, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            8                             29
  CLUS_2                          100                             88
  CLUS_3                           36                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK  2(1P13.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.1) MUTATED       17     36     10      9
  DEL PEAK  2(1P13.1) WILD-TYPE     24     14     24     20
D32V1, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          17                            24
  CLUS_2                          36                            14
  CLUS_3                          10                            24
  CLUS_4                           9                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.1) MUTATED       19     39     14
  DEL PEAK  2(1P13.1) WILD-TYPE     28     17     37
D32V2, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          19                            28
  CLUS_2                          39                            17
  CLUS_3                          14                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P13.1) MUTATED       24     24     13     17    123     20
  DEL PEAK  2(1P13.1) WILD-TYPE     19     91     16     70     46     38
D32V3, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          24                            19
  CLUS_2                          24                            91
  CLUS_3                          13                            16
  CLUS_4                          17                            70
  CLUS_5                         123                            46
  CLUS_6                          20                            38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.1) MUTATED       31     60     37     29
  DEL PEAK  2(1P13.1) WILD-TYPE     59     35     20     96
D32V4, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          31                            59
  CLUS_2                          60                            35
  CLUS_3                          37                            20
  CLUS_4                          29                            96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.1) MUTATED       39     41     55     10
  DEL PEAK  2(1P13.1) WILD-TYPE     66     68     31     16
D32V5, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          39                            66
  CLUS_2                          41                            68
  CLUS_3                          55                            31
  CLUS_4                          10                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P13.1) MUTATED       39     33     23     32     12      6
  DEL PEAK  2(1P13.1) WILD-TYPE     40     34     39     28     18     22
D32V6, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          39                            40
  CLUS_2                          33                            34
  CLUS_3                          23                            39
  CLUS_4                          32                            28
  CLUS_5                          12                            18
  CLUS_6                           6                            22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.1) MUTATED       32    106     57     25
  DEL PEAK  2(1P13.1) WILD-TYPE     74     44    102     58
D32V7, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          32                            74
  CLUS_2                         106                            44
  CLUS_3                          57                           102
  CLUS_4                          25                            58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.1) MUTATED       48    125     47
  DEL PEAK  2(1P13.1) WILD-TYPE    130     64     84
D32V8, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          48                           130
  CLUS_2                         125                            64
  CLUS_3                          47                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.1) MUTATED       90     36     29     55
  DEL PEAK  2(1P13.1) WILD-TYPE     94     51     95     25
D32V9, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          90                            94
  CLUS_2                          36                            51
  CLUS_3                          29                            95
  CLUS_4                          55                            25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.1) MUTATED       62     53     79     16
  DEL PEAK  2(1P13.1) WILD-TYPE     27     65    120     53
D32V10, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          62                            27
  CLUS_2                          53                            65
  CLUS_3                          79                           120
  CLUS_4                          16                            53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.1) MUTATED       20     58     15     49
  DEL PEAK  2(1P13.1) WILD-TYPE     41     57     51     43
D32V11, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          20                            41
  CLUS_2                          58                            57
  CLUS_3                          15                            51
  CLUS_4                          49                            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.1) MUTATED        9     97     36
  DEL PEAK  2(1P13.1) WILD-TYPE     28     91     73
D32V12, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                           9                            28
  CLUS_2                          97                            91
  CLUS_3                          36                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK  3(2P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED        7      5      1      6
  DEL PEAK  3(2P25.3) WILD-TYPE     34     45     33     23
D33V1, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           7                            34
  CLUS_2                           5                            45
  CLUS_3                           1                            33
  CLUS_4                           6                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED        8      5      6
  DEL PEAK  3(2P25.3) WILD-TYPE     39     51     45
D33V2, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           8                            39
  CLUS_2                           5                            51
  CLUS_3                           6                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2P25.3) MUTATED       10      7      3      5     15     10
  DEL PEAK  3(2P25.3) WILD-TYPE     33    108     26     82    154     48
D33V3, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          10                            33
  CLUS_2                           7                           108
  CLUS_3                           3                            26
  CLUS_4                           5                            82
  CLUS_5                          15                           154
  CLUS_6                          10                            48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED        9     10      5     11
  DEL PEAK  3(2P25.3) WILD-TYPE     81     85     52    114
D33V4, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           9                            81
  CLUS_2                          10                            85
  CLUS_3                           5                            52
  CLUS_4                          11                           114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED        7     12     10      2
  DEL PEAK  3(2P25.3) WILD-TYPE     98     97     76     24
D33V5, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           7                            98
  CLUS_2                          12                            97
  CLUS_3                          10                            76
  CLUS_4                           2                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2P25.3) MUTATED       10      3      5     11      2      0
  DEL PEAK  3(2P25.3) WILD-TYPE     69     64     57     49     28     28
D33V6, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          10                            69
  CLUS_2                           3                            64
  CLUS_3                           5                            57
  CLUS_4                          11                            49
  CLUS_5                           2                            28
  CLUS_6                           0                            28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED        9     13     22      6
  DEL PEAK  3(2P25.3) WILD-TYPE     97    137    137     77
D33V7, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           9                            97
  CLUS_2                          13                           137
  CLUS_3                          22                           137
  CLUS_4                           6                            77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       17     17     16
  DEL PEAK  3(2P25.3) WILD-TYPE    161    172    115
D33V8, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          17                           161
  CLUS_2                          17                           172
  CLUS_3                          16                           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED       28      9      5      6
  DEL PEAK  3(2P25.3) WILD-TYPE    156     78    119     74
D33V9, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          28                           156
  CLUS_2                           9                            78
  CLUS_3                           5                           119
  CLUS_4                           6                            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED        9     13     23      3
  DEL PEAK  3(2P25.3) WILD-TYPE     80    105    176     66
D33V10, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           9                            80
  CLUS_2                          13                           105
  CLUS_3                          23                           176
  CLUS_4                           3                            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED        4     13      2     10
  DEL PEAK  3(2P25.3) WILD-TYPE     57    102     64     82
D33V11, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           4                            57
  CLUS_2                          13                           102
  CLUS_3                           2                            64
  CLUS_4                          10                            82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED        2     23      4
  DEL PEAK  3(2P25.3) WILD-TYPE     35    165    105
D33V12, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           2                            35
  CLUS_2                          23                           165
  CLUS_3                           4                           105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK  4(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED        9     18      5     12
  DEL PEAK  4(2Q22.1) WILD-TYPE     32     32     29     17
D34V1, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           9                            32
  CLUS_2                          18                            32
  CLUS_3                           5                            29
  CLUS_4                          12                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       12     20     12
  DEL PEAK  4(2Q22.1) WILD-TYPE     35     36     39
D34V2, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          12                            35
  CLUS_2                          20                            36
  CLUS_3                          12                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q22.1) MUTATED       10     14      4     16     63     24
  DEL PEAK  4(2Q22.1) WILD-TYPE     33    101     25     71    106     34
D34V3, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          10                            33
  CLUS_2                          14                           101
  CLUS_3                           4                            25
  CLUS_4                          16                            71
  CLUS_5                          63                           106
  CLUS_6                          24                            34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED       25     25     26     16
  DEL PEAK  4(2Q22.1) WILD-TYPE     65     70     31    109
D34V4, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          25                            65
  CLUS_2                          25                            70
  CLUS_3                          26                            31
  CLUS_4                          16                           109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED       17     29     26      3
  DEL PEAK  4(2Q22.1) WILD-TYPE     88     80     60     23
D34V5, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          17                            88
  CLUS_2                          29                            80
  CLUS_3                          26                            60
  CLUS_4                           3                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q22.1) MUTATED       19     18     16     17      3      2
  DEL PEAK  4(2Q22.1) WILD-TYPE     60     49     46     43     27     26
D34V6, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          19                            60
  CLUS_2                          18                            49
  CLUS_3                          16                            46
  CLUS_4                          17                            43
  CLUS_5                           3                            27
  CLUS_6                           2                            26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED       22     49     49     11
  DEL PEAK  4(2Q22.1) WILD-TYPE     84    101    110     72
D34V7, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          22                            84
  CLUS_2                          49                           101
  CLUS_3                          49                           110
  CLUS_4                          11                            72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       33     62     36
  DEL PEAK  4(2Q22.1) WILD-TYPE    145    127     95
D34V8, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          33                           145
  CLUS_2                          62                           127
  CLUS_3                          36                            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED       60     20     19     28
  DEL PEAK  4(2Q22.1) WILD-TYPE    124     67    105     52
D34V9, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          60                           124
  CLUS_2                          20                            67
  CLUS_3                          19                           105
  CLUS_4                          28                            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED       35     38     45      9
  DEL PEAK  4(2Q22.1) WILD-TYPE     54     80    154     60
D34V10, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          35                            54
  CLUS_2                          38                            80
  CLUS_3                          45                           154
  CLUS_4                           9                            60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED       14     41      6     24
  DEL PEAK  4(2Q22.1) WILD-TYPE     47     74     60     68
D34V11, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          14                            47
  CLUS_2                          41                            74
  CLUS_3                           6                            60
  CLUS_4                          24                            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED        8     60     17
  DEL PEAK  4(2Q22.1) WILD-TYPE     29    128     92
D34V12, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           8                            29
  CLUS_2                          60                           128
  CLUS_3                          17                            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK  5(2Q37.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.1) MUTATED        7     26      7     10
  DEL PEAK  5(2Q37.1) WILD-TYPE     34     24     27     19
D35V1, multiclass
        clus
vv       DEL PEAK  5(2Q37.1) MUTATED DEL PEAK  5(2Q37.1) WILD-TYPE
  CLUS_1                           7                            34
  CLUS_2                          26                            24
  CLUS_3                           7                            27
  CLUS_4                          10                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.1) MUTATED       11     29     10
  DEL PEAK  5(2Q37.1) WILD-TYPE     36     27     41
D35V2, multiclass
        clus
vv       DEL PEAK  5(2Q37.1) MUTATED DEL PEAK  5(2Q37.1) WILD-TYPE
  CLUS_1                          11                            36
  CLUS_2                          29                            27
  CLUS_3                          10                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q37.1) MUTATED       12     18      5     15     86     23
  DEL PEAK  5(2Q37.1) WILD-TYPE     31     97     24     72     83     35
D35V3, multiclass
        clus
vv       DEL PEAK  5(2Q37.1) MUTATED DEL PEAK  5(2Q37.1) WILD-TYPE
  CLUS_1                          12                            31
  CLUS_2                          18                            97
  CLUS_3                           5                            24
  CLUS_4                          15                            72
  CLUS_5                          86                            83
  CLUS_6                          23                            35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.1) MUTATED       28     49     23     20
  DEL PEAK  5(2Q37.1) WILD-TYPE     62     46     34    105
D35V4, multiclass
        clus
vv       DEL PEAK  5(2Q37.1) MUTATED DEL PEAK  5(2Q37.1) WILD-TYPE
  CLUS_1                          28                            62
  CLUS_2                          49                            46
  CLUS_3                          23                            34
  CLUS_4                          20                           105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.1) MUTATED       26     29     40      6
  DEL PEAK  5(2Q37.1) WILD-TYPE     79     80     46     20
D35V5, multiclass
        clus
vv       DEL PEAK  5(2Q37.1) MUTATED DEL PEAK  5(2Q37.1) WILD-TYPE
  CLUS_1                          26                            79
  CLUS_2                          29                            80
  CLUS_3                          40                            46
  CLUS_4                           6                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q37.1) MUTATED       24     26     14     22      8      7
  DEL PEAK  5(2Q37.1) WILD-TYPE     55     41     48     38     22     21
D35V6, multiclass
        clus
vv       DEL PEAK  5(2Q37.1) MUTATED DEL PEAK  5(2Q37.1) WILD-TYPE
  CLUS_1                          24                            55
  CLUS_2                          26                            41
  CLUS_3                          14                            48
  CLUS_4                          22                            38
  CLUS_5                           8                            22
  CLUS_6                           7                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.1) MUTATED       32     71     44     11
  DEL PEAK  5(2Q37.1) WILD-TYPE     74     79    115     72
D35V7, multiclass
        clus
vv       DEL PEAK  5(2Q37.1) MUTATED DEL PEAK  5(2Q37.1) WILD-TYPE
  CLUS_1                          32                            74
  CLUS_2                          71                            79
  CLUS_3                          44                           115
  CLUS_4                          11                            72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.1) MUTATED       38     88     32
  DEL PEAK  5(2Q37.1) WILD-TYPE    140    101     99
D35V8, multiclass
        clus
vv       DEL PEAK  5(2Q37.1) MUTATED DEL PEAK  5(2Q37.1) WILD-TYPE
  CLUS_1                          38                           140
  CLUS_2                          88                           101
  CLUS_3                          32                            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.1) MUTATED       75     31     16     31
  DEL PEAK  5(2Q37.1) WILD-TYPE    109     56    108     49
D35V9, multiclass
        clus
vv       DEL PEAK  5(2Q37.1) MUTATED DEL PEAK  5(2Q37.1) WILD-TYPE
  CLUS_1                          75                           109
  CLUS_2                          31                            56
  CLUS_3                          16                           108
  CLUS_4                          31                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.1) MUTATED       34     54     56      9
  DEL PEAK  5(2Q37.1) WILD-TYPE     55     64    143     60
D35V10, multiclass
        clus
vv       DEL PEAK  5(2Q37.1) MUTATED DEL PEAK  5(2Q37.1) WILD-TYPE
  CLUS_1                          34                            55
  CLUS_2                          54                            64
  CLUS_3                          56                           143
  CLUS_4                           9                            60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.1) MUTATED       17     46      8     35
  DEL PEAK  5(2Q37.1) WILD-TYPE     44     69     58     57
D35V11, multiclass
        clus
vv       DEL PEAK  5(2Q37.1) MUTATED DEL PEAK  5(2Q37.1) WILD-TYPE
  CLUS_1                          17                            44
  CLUS_2                          46                            69
  CLUS_3                           8                            58
  CLUS_4                          35                            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.1) MUTATED        3     72     31
  DEL PEAK  5(2Q37.1) WILD-TYPE     34    116     78
D35V12, multiclass
        clus
vv       DEL PEAK  5(2Q37.1) MUTATED DEL PEAK  5(2Q37.1) WILD-TYPE
  CLUS_1                           3                            34
  CLUS_2                          72                           116
  CLUS_3                          31                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK  6(3P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P25.3) MUTATED       30     45     23     25
  DEL PEAK  6(3P25.3) WILD-TYPE     11      5     11      4
D36V1, multiclass
        clus
vv       DEL PEAK  6(3P25.3) MUTATED DEL PEAK  6(3P25.3) WILD-TYPE
  CLUS_1                          30                            11
  CLUS_2                          45                             5
  CLUS_3                          23                            11
  CLUS_4                          25                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P25.3) MUTATED       36     49     38
  DEL PEAK  6(3P25.3) WILD-TYPE     11      7     13
D36V2, multiclass
        clus
vv       DEL PEAK  6(3P25.3) MUTATED DEL PEAK  6(3P25.3) WILD-TYPE
  CLUS_1                          36                            11
  CLUS_2                          49                             7
  CLUS_3                          38                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P25.3) MUTATED       37     70     25     72    150     44
  DEL PEAK  6(3P25.3) WILD-TYPE      6     45      4     15     19     14
D36V3, multiclass
        clus
vv       DEL PEAK  6(3P25.3) MUTATED DEL PEAK  6(3P25.3) WILD-TYPE
  CLUS_1                          37                             6
  CLUS_2                          70                            45
  CLUS_3                          25                             4
  CLUS_4                          72                            15
  CLUS_5                         150                            19
  CLUS_6                          44                            14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P25.3) MUTATED       76     84     49     83
  DEL PEAK  6(3P25.3) WILD-TYPE     14     11      8     42
D36V4, multiclass
        clus
vv       DEL PEAK  6(3P25.3) MUTATED DEL PEAK  6(3P25.3) WILD-TYPE
  CLUS_1                          76                            14
  CLUS_2                          84                            11
  CLUS_3                          49                             8
  CLUS_4                          83                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P25.3) MUTATED       81     83     68     24
  DEL PEAK  6(3P25.3) WILD-TYPE     24     26     18      2
D36V5, multiclass
        clus
vv       DEL PEAK  6(3P25.3) MUTATED DEL PEAK  6(3P25.3) WILD-TYPE
  CLUS_1                          81                            24
  CLUS_2                          83                            26
  CLUS_3                          68                            18
  CLUS_4                          24                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P25.3) MUTATED       60     54     51     51     22     18
  DEL PEAK  6(3P25.3) WILD-TYPE     19     13     11      9      8     10
D36V6, multiclass
        clus
vv       DEL PEAK  6(3P25.3) MUTATED DEL PEAK  6(3P25.3) WILD-TYPE
  CLUS_1                          60                            19
  CLUS_2                          54                            13
  CLUS_3                          51                            11
  CLUS_4                          51                             9
  CLUS_5                          22                             8
  CLUS_6                          18                            10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P25.3) MUTATED       83    131    127     55
  DEL PEAK  6(3P25.3) WILD-TYPE     23     19     32     28
D36V7, multiclass
        clus
vv       DEL PEAK  6(3P25.3) MUTATED DEL PEAK  6(3P25.3) WILD-TYPE
  CLUS_1                          83                            23
  CLUS_2                         131                            19
  CLUS_3                         127                            32
  CLUS_4                          55                            28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P25.3) MUTATED      141    165     90
  DEL PEAK  6(3P25.3) WILD-TYPE     37     24     41
D36V8, multiclass
        clus
vv       DEL PEAK  6(3P25.3) MUTATED DEL PEAK  6(3P25.3) WILD-TYPE
  CLUS_1                         141                            37
  CLUS_2                         165                            24
  CLUS_3                          90                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P25.3) MUTATED      147     76     85     68
  DEL PEAK  6(3P25.3) WILD-TYPE     37     11     39     12
D36V9, multiclass
        clus
vv       DEL PEAK  6(3P25.3) MUTATED DEL PEAK  6(3P25.3) WILD-TYPE
  CLUS_1                         147                            37
  CLUS_2                          76                            11
  CLUS_3                          85                            39
  CLUS_4                          68                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P25.3) MUTATED       76     94    166     40
  DEL PEAK  6(3P25.3) WILD-TYPE     13     24     33     29
D36V10, multiclass
        clus
vv       DEL PEAK  6(3P25.3) MUTATED DEL PEAK  6(3P25.3) WILD-TYPE
  CLUS_1                          76                            13
  CLUS_2                          94                            24
  CLUS_3                         166                            33
  CLUS_4                          40                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P25.3) MUTATED       47     97     43     78
  DEL PEAK  6(3P25.3) WILD-TYPE     14     18     23     14
D36V11, multiclass
        clus
vv       DEL PEAK  6(3P25.3) MUTATED DEL PEAK  6(3P25.3) WILD-TYPE
  CLUS_1                          47                            14
  CLUS_2                          97                            18
  CLUS_3                          43                            23
  CLUS_4                          78                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P25.3) MUTATED       30    158     77
  DEL PEAK  6(3P25.3) WILD-TYPE      7     30     32
D36V12, multiclass
        clus
vv       DEL PEAK  6(3P25.3) MUTATED DEL PEAK  6(3P25.3) WILD-TYPE
  CLUS_1                          30                             7
  CLUS_2                         158                            30
  CLUS_3                          77                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK  7(3P13) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P13) MUTATED       37     45     24     27
  DEL PEAK  7(3P13) WILD-TYPE      4      5     10      2
D37V1, multiclass
        clus
vv       DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE
  CLUS_1                        37                           4
  CLUS_2                        45                           5
  CLUS_3                        24                          10
  CLUS_4                        27                           2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P13) MUTATED       42     50     41
  DEL PEAK  7(3P13) WILD-TYPE      5      6     10
D37V2, multiclass
        clus
vv       DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE
  CLUS_1                        42                           5
  CLUS_2                        50                           6
  CLUS_3                        41                          10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P13) MUTATED       41     70     28     81    161     53
  DEL PEAK  7(3P13) WILD-TYPE      2     45      1      6      8      5
D37V3, multiclass
        clus
vv       DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE
  CLUS_1                        41                           2
  CLUS_2                        70                          45
  CLUS_3                        28                           1
  CLUS_4                        81                           6
  CLUS_5                       161                           8
  CLUS_6                        53                           5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P13) MUTATED       82     88     56     92
  DEL PEAK  7(3P13) WILD-TYPE      8      7      1     33
D37V4, multiclass
        clus
vv       DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE
  CLUS_1                        82                           8
  CLUS_2                        88                           7
  CLUS_3                        56                           1
  CLUS_4                        92                          33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P13) MUTATED       86     95     76     25
  DEL PEAK  7(3P13) WILD-TYPE     19     14     10      1
D37V5, multiclass
        clus
vv       DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE
  CLUS_1                        86                          19
  CLUS_2                        95                          14
  CLUS_3                        76                          10
  CLUS_4                        25                           1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P13) MUTATED       68     59     57     55     24     19
  DEL PEAK  7(3P13) WILD-TYPE     11      8      5      5      6      9
D37V6, multiclass
        clus
vv       DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE
  CLUS_1                        68                          11
  CLUS_2                        59                           8
  CLUS_3                        57                           5
  CLUS_4                        55                           5
  CLUS_5                        24                           6
  CLUS_6                        19                           9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P13) MUTATED       95    138    138     60
  DEL PEAK  7(3P13) WILD-TYPE     11     12     21     23
D37V7, multiclass
        clus
vv       DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE
  CLUS_1                        95                          11
  CLUS_2                       138                          12
  CLUS_3                       138                          21
  CLUS_4                        60                          23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P13) MUTATED      154    175    102
  DEL PEAK  7(3P13) WILD-TYPE     24     14     29
D37V8, multiclass
        clus
vv       DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE
  CLUS_1                       154                          24
  CLUS_2                       175                          14
  CLUS_3                       102                          29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P13) MUTATED      168     82     91     70
  DEL PEAK  7(3P13) WILD-TYPE     16      5     33     10
D37V9, multiclass
        clus
vv       DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE
  CLUS_1                       168                          16
  CLUS_2                        82                           5
  CLUS_3                        91                          33
  CLUS_4                        70                          10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P13) MUTATED       79    104    185     43
  DEL PEAK  7(3P13) WILD-TYPE     10     14     14     26
D37V10, multiclass
        clus
vv       DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE
  CLUS_1                        79                          10
  CLUS_2                       104                          14
  CLUS_3                       185                          14
  CLUS_4                        43                          26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P13) MUTATED       54    108     44     85
  DEL PEAK  7(3P13) WILD-TYPE      7      7     22      7
D37V11, multiclass
        clus
vv       DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE
  CLUS_1                        54                           7
  CLUS_2                       108                           7
  CLUS_3                        44                          22
  CLUS_4                        85                           7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P13) MUTATED       32    174     85
  DEL PEAK  7(3P13) WILD-TYPE      5     14     24
D37V12, multiclass
        clus
vv       DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE
  CLUS_1                        32                           5
  CLUS_2                       174                          14
  CLUS_3                        85                          24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK  8(3P12.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P12.3) MUTATED       37     45     24     26
  DEL PEAK  8(3P12.3) WILD-TYPE      4      5     10      3
D38V1, multiclass
        clus
vv       DEL PEAK  8(3P12.3) MUTATED DEL PEAK  8(3P12.3) WILD-TYPE
  CLUS_1                          37                             4
  CLUS_2                          45                             5
  CLUS_3                          24                            10
  CLUS_4                          26                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P12.3) MUTATED       42     50     40
  DEL PEAK  8(3P12.3) WILD-TYPE      5      6     11
D38V2, multiclass
        clus
vv       DEL PEAK  8(3P12.3) MUTATED DEL PEAK  8(3P12.3) WILD-TYPE
  CLUS_1                          42                             5
  CLUS_2                          50                             6
  CLUS_3                          40                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3P12.3) MUTATED       41     67     28     81    158     52
  DEL PEAK  8(3P12.3) WILD-TYPE      2     48      1      6     11      6
D38V3, multiclass
        clus
vv       DEL PEAK  8(3P12.3) MUTATED DEL PEAK  8(3P12.3) WILD-TYPE
  CLUS_1                          41                             2
  CLUS_2                          67                            48
  CLUS_3                          28                             1
  CLUS_4                          81                             6
  CLUS_5                         158                            11
  CLUS_6                          52                             6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P12.3) MUTATED       83     84     56     89
  DEL PEAK  8(3P12.3) WILD-TYPE      7     11      1     36
D38V4, multiclass
        clus
vv       DEL PEAK  8(3P12.3) MUTATED DEL PEAK  8(3P12.3) WILD-TYPE
  CLUS_1                          83                             7
  CLUS_2                          84                            11
  CLUS_3                          56                             1
  CLUS_4                          89                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P12.3) MUTATED       85     93     74     24
  DEL PEAK  8(3P12.3) WILD-TYPE     20     16     12      2
D38V5, multiclass
        clus
vv       DEL PEAK  8(3P12.3) MUTATED DEL PEAK  8(3P12.3) WILD-TYPE
  CLUS_1                          85                            20
  CLUS_2                          93                            16
  CLUS_3                          74                            12
  CLUS_4                          24                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3P12.3) MUTATED       65     58     57     55     24     17
  DEL PEAK  8(3P12.3) WILD-TYPE     14      9      5      5      6     11
D38V6, multiclass
        clus
vv       DEL PEAK  8(3P12.3) MUTATED DEL PEAK  8(3P12.3) WILD-TYPE
  CLUS_1                          65                            14
  CLUS_2                          58                             9
  CLUS_3                          57                             5
  CLUS_4                          55                             5
  CLUS_5                          24                             6
  CLUS_6                          17                            11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P12.3) MUTATED       94    136    136     58
  DEL PEAK  8(3P12.3) WILD-TYPE     12     14     23     25
D38V7, multiclass
        clus
vv       DEL PEAK  8(3P12.3) MUTATED DEL PEAK  8(3P12.3) WILD-TYPE
  CLUS_1                          94                            12
  CLUS_2                         136                            14
  CLUS_3                         136                            23
  CLUS_4                          58                            25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P12.3) MUTATED      152    171    101
  DEL PEAK  8(3P12.3) WILD-TYPE     26     18     30
D38V8, multiclass
        clus
vv       DEL PEAK  8(3P12.3) MUTATED DEL PEAK  8(3P12.3) WILD-TYPE
  CLUS_1                         152                            26
  CLUS_2                         171                            18
  CLUS_3                         101                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P12.3) MUTATED      163     80     92     69
  DEL PEAK  8(3P12.3) WILD-TYPE     21      7     32     11
D38V9, multiclass
        clus
vv       DEL PEAK  8(3P12.3) MUTATED DEL PEAK  8(3P12.3) WILD-TYPE
  CLUS_1                         163                            21
  CLUS_2                          80                             7
  CLUS_3                          92                            32
  CLUS_4                          69                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P12.3) MUTATED       79    103    180     42
  DEL PEAK  8(3P12.3) WILD-TYPE     10     15     19     27
D38V10, multiclass
        clus
vv       DEL PEAK  8(3P12.3) MUTATED DEL PEAK  8(3P12.3) WILD-TYPE
  CLUS_1                          79                            10
  CLUS_2                         103                            15
  CLUS_3                         180                            19
  CLUS_4                          42                            27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P12.3) MUTATED       53    106     44     83
  DEL PEAK  8(3P12.3) WILD-TYPE      8      9     22      9
D38V11, multiclass
        clus
vv       DEL PEAK  8(3P12.3) MUTATED DEL PEAK  8(3P12.3) WILD-TYPE
  CLUS_1                          53                             8
  CLUS_2                         106                             9
  CLUS_3                          44                            22
  CLUS_4                          83                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P12.3) MUTATED       32    171     83
  DEL PEAK  8(3P12.3) WILD-TYPE      5     17     26
D38V12, multiclass
        clus
vv       DEL PEAK  8(3P12.3) MUTATED DEL PEAK  8(3P12.3) WILD-TYPE
  CLUS_1                          32                             5
  CLUS_2                         171                            17
  CLUS_3                          83                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK  9(3P12.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P12.3) MUTATED       36     44     23     27
  DEL PEAK  9(3P12.3) WILD-TYPE      5      6     11      2
D39V1, multiclass
        clus
vv       DEL PEAK  9(3P12.3) MUTATED DEL PEAK  9(3P12.3) WILD-TYPE
  CLUS_1                          36                             5
  CLUS_2                          44                             6
  CLUS_3                          23                            11
  CLUS_4                          27                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P12.3) MUTATED       41     49     40
  DEL PEAK  9(3P12.3) WILD-TYPE      6      7     11
D39V2, multiclass
        clus
vv       DEL PEAK  9(3P12.3) MUTATED DEL PEAK  9(3P12.3) WILD-TYPE
  CLUS_1                          41                             6
  CLUS_2                          49                             7
  CLUS_3                          40                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(3P12.3) MUTATED       41     66     27     79    157     51
  DEL PEAK  9(3P12.3) WILD-TYPE      2     49      2      8     12      7
D39V3, multiclass
        clus
vv       DEL PEAK  9(3P12.3) MUTATED DEL PEAK  9(3P12.3) WILD-TYPE
  CLUS_1                          41                             2
  CLUS_2                          66                            49
  CLUS_3                          27                             2
  CLUS_4                          79                             8
  CLUS_5                         157                            12
  CLUS_6                          51                             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P12.3) MUTATED       81     83     56     88
  DEL PEAK  9(3P12.3) WILD-TYPE      9     12      1     37
D39V4, multiclass
        clus
vv       DEL PEAK  9(3P12.3) MUTATED DEL PEAK  9(3P12.3) WILD-TYPE
  CLUS_1                          81                             9
  CLUS_2                          83                            12
  CLUS_3                          56                             1
  CLUS_4                          88                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P12.3) MUTATED       84     90     74     24
  DEL PEAK  9(3P12.3) WILD-TYPE     21     19     12      2
D39V5, multiclass
        clus
vv       DEL PEAK  9(3P12.3) MUTATED DEL PEAK  9(3P12.3) WILD-TYPE
  CLUS_1                          84                            21
  CLUS_2                          90                            19
  CLUS_3                          74                            12
  CLUS_4                          24                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(3P12.3) MUTATED       64     57     57     54     23     17
  DEL PEAK  9(3P12.3) WILD-TYPE     15     10      5      6      7     11
D39V6, multiclass
        clus
vv       DEL PEAK  9(3P12.3) MUTATED DEL PEAK  9(3P12.3) WILD-TYPE
  CLUS_1                          64                            15
  CLUS_2                          57                            10
  CLUS_3                          57                             5
  CLUS_4                          54                             6
  CLUS_5                          23                             7
  CLUS_6                          17                            11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P12.3) MUTATED       92    134    134     58
  DEL PEAK  9(3P12.3) WILD-TYPE     14     16     25     25
D39V7, multiclass
        clus
vv       DEL PEAK  9(3P12.3) MUTATED DEL PEAK  9(3P12.3) WILD-TYPE
  CLUS_1                          92                            14
  CLUS_2                         134                            16
  CLUS_3                         134                            25
  CLUS_4                          58                            25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P12.3) MUTATED      149    169    100
  DEL PEAK  9(3P12.3) WILD-TYPE     29     20     31
D39V8, multiclass
        clus
vv       DEL PEAK  9(3P12.3) MUTATED DEL PEAK  9(3P12.3) WILD-TYPE
  CLUS_1                         149                            29
  CLUS_2                         169                            20
  CLUS_3                         100                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P12.3) MUTATED      160     79     90     69
  DEL PEAK  9(3P12.3) WILD-TYPE     24      8     34     11
D39V9, multiclass
        clus
vv       DEL PEAK  9(3P12.3) MUTATED DEL PEAK  9(3P12.3) WILD-TYPE
  CLUS_1                         160                            24
  CLUS_2                          79                             8
  CLUS_3                          90                            34
  CLUS_4                          69                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P12.3) MUTATED       79    101    176     42
  DEL PEAK  9(3P12.3) WILD-TYPE     10     17     23     27
D39V10, multiclass
        clus
vv       DEL PEAK  9(3P12.3) MUTATED DEL PEAK  9(3P12.3) WILD-TYPE
  CLUS_1                          79                            10
  CLUS_2                         101                            17
  CLUS_3                         176                            23
  CLUS_4                          42                            27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P12.3) MUTATED       53    105     43     82
  DEL PEAK  9(3P12.3) WILD-TYPE      8     10     23     10
D39V11, multiclass
        clus
vv       DEL PEAK  9(3P12.3) MUTATED DEL PEAK  9(3P12.3) WILD-TYPE
  CLUS_1                          53                             8
  CLUS_2                         105                            10
  CLUS_3                          43                            23
  CLUS_4                          82                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P12.3) MUTATED       32    169     82
  DEL PEAK  9(3P12.3) WILD-TYPE      5     19     27
D39V12, multiclass
        clus
vv       DEL PEAK  9(3P12.3) MUTATED DEL PEAK  9(3P12.3) WILD-TYPE
  CLUS_1                          32                             5
  CLUS_2                         169                            19
  CLUS_3                          82                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 10(3Q11.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3Q11.1) MUTATED        6      6      6      5
  DEL PEAK 10(3Q11.1) WILD-TYPE     35     44     28     24
D40V1, multiclass
        clus
vv       DEL PEAK 10(3Q11.1) MUTATED DEL PEAK 10(3Q11.1) WILD-TYPE
  CLUS_1                           6                            35
  CLUS_2                           6                            44
  CLUS_3                           6                            28
  CLUS_4                           5                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3Q11.1) MUTATED        7      7      9
  DEL PEAK 10(3Q11.1) WILD-TYPE     40     49     42
D40V2, multiclass
        clus
vv       DEL PEAK 10(3Q11.1) MUTATED DEL PEAK 10(3Q11.1) WILD-TYPE
  CLUS_1                           7                            40
  CLUS_2                           7                            49
  CLUS_3                           9                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(3Q11.1) MUTATED        8     21      2     10     30      8
  DEL PEAK 10(3Q11.1) WILD-TYPE     35     94     27     77    139     50
D40V3, multiclass
        clus
vv       DEL PEAK 10(3Q11.1) MUTATED DEL PEAK 10(3Q11.1) WILD-TYPE
  CLUS_1                           8                            35
  CLUS_2                          21                            94
  CLUS_3                           2                            27
  CLUS_4                          10                            77
  CLUS_5                          30                           139
  CLUS_6                           8                            50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3Q11.1) MUTATED       13     19      5     21
  DEL PEAK 10(3Q11.1) WILD-TYPE     77     76     52    104
D40V4, multiclass
        clus
vv       DEL PEAK 10(3Q11.1) MUTATED DEL PEAK 10(3Q11.1) WILD-TYPE
  CLUS_1                          13                            77
  CLUS_2                          19                            76
  CLUS_3                           5                            52
  CLUS_4                          21                           104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3Q11.1) MUTATED       13     18     12      5
  DEL PEAK 10(3Q11.1) WILD-TYPE     92     91     74     21
D40V5, multiclass
        clus
vv       DEL PEAK 10(3Q11.1) MUTATED DEL PEAK 10(3Q11.1) WILD-TYPE
  CLUS_1                          13                            92
  CLUS_2                          18                            91
  CLUS_3                          12                            74
  CLUS_4                           5                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(3Q11.1) MUTATED       12     11      9     10      5      1
  DEL PEAK 10(3Q11.1) WILD-TYPE     67     56     53     50     25     27
D40V6, multiclass
        clus
vv       DEL PEAK 10(3Q11.1) MUTATED DEL PEAK 10(3Q11.1) WILD-TYPE
  CLUS_1                          12                            67
  CLUS_2                          11                            56
  CLUS_3                           9                            53
  CLUS_4                          10                            50
  CLUS_5                           5                            25
  CLUS_6                           1                            27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3Q11.1) MUTATED       19     25     24     11
  DEL PEAK 10(3Q11.1) WILD-TYPE     87    125    135     72
D40V7, multiclass
        clus
vv       DEL PEAK 10(3Q11.1) MUTATED DEL PEAK 10(3Q11.1) WILD-TYPE
  CLUS_1                          19                            87
  CLUS_2                          25                           125
  CLUS_3                          24                           135
  CLUS_4                          11                            72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3Q11.1) MUTATED       22     37     20
  DEL PEAK 10(3Q11.1) WILD-TYPE    156    152    111
D40V8, multiclass
        clus
vv       DEL PEAK 10(3Q11.1) MUTATED DEL PEAK 10(3Q11.1) WILD-TYPE
  CLUS_1                          22                           156
  CLUS_2                          37                           152
  CLUS_3                          20                           111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3Q11.1) MUTATED       24     17     17     15
  DEL PEAK 10(3Q11.1) WILD-TYPE    160     70    107     65
D40V9, multiclass
        clus
vv       DEL PEAK 10(3Q11.1) MUTATED DEL PEAK 10(3Q11.1) WILD-TYPE
  CLUS_1                          24                           160
  CLUS_2                          17                            70
  CLUS_3                          17                           107
  CLUS_4                          15                            65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3Q11.1) MUTATED       16     14     34      9
  DEL PEAK 10(3Q11.1) WILD-TYPE     73    104    165     60
D40V10, multiclass
        clus
vv       DEL PEAK 10(3Q11.1) MUTATED DEL PEAK 10(3Q11.1) WILD-TYPE
  CLUS_1                          16                            73
  CLUS_2                          14                           104
  CLUS_3                          34                           165
  CLUS_4                           9                            60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3Q11.1) MUTATED       11     18      9     15
  DEL PEAK 10(3Q11.1) WILD-TYPE     50     97     57     77
D40V11, multiclass
        clus
vv       DEL PEAK 10(3Q11.1) MUTATED DEL PEAK 10(3Q11.1) WILD-TYPE
  CLUS_1                          11                            50
  CLUS_2                          18                            97
  CLUS_3                           9                            57
  CLUS_4                          15                            77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3Q11.1) MUTATED        5     31     17
  DEL PEAK 10(3Q11.1) WILD-TYPE     32    157     92
D40V12, multiclass
        clus
vv       DEL PEAK 10(3Q11.1) MUTATED DEL PEAK 10(3Q11.1) WILD-TYPE
  CLUS_1                           5                            32
  CLUS_2                          31                           157
  CLUS_3                          17                            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 11(4P15.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4P15.2) MUTATED       31     39     12     15
  DEL PEAK 11(4P15.2) WILD-TYPE     10     11     22     14
D41V1, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                          31                            10
  CLUS_2                          39                            11
  CLUS_3                          12                            22
  CLUS_4                          15                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4P15.2) MUTATED       34     44     19
  DEL PEAK 11(4P15.2) WILD-TYPE     13     12     32
D41V2, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                          34                            13
  CLUS_2                          44                            12
  CLUS_3                          19                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(4P15.2) MUTATED       31     46     15     50    138     36
  DEL PEAK 11(4P15.2) WILD-TYPE     12     69     14     37     31     22
D41V3, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                          31                            12
  CLUS_2                          46                            69
  CLUS_3                          15                            14
  CLUS_4                          50                            37
  CLUS_5                         138                            31
  CLUS_6                          36                            22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4P15.2) MUTATED       58     71     42     60
  DEL PEAK 11(4P15.2) WILD-TYPE     32     24     15     65
D41V4, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                          58                            32
  CLUS_2                          71                            24
  CLUS_3                          42                            15
  CLUS_4                          60                            65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4P15.2) MUTATED       62     72     68     18
  DEL PEAK 11(4P15.2) WILD-TYPE     43     37     18      8
D41V5, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                          62                            43
  CLUS_2                          72                            37
  CLUS_3                          68                            18
  CLUS_4                          18                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(4P15.2) MUTATED       52     49     45     45     16     13
  DEL PEAK 11(4P15.2) WILD-TYPE     27     18     17     15     14     15
D41V6, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                          52                            27
  CLUS_2                          49                            18
  CLUS_3                          45                            17
  CLUS_4                          45                            15
  CLUS_5                          16                            14
  CLUS_6                          13                            15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4P15.2) MUTATED       69    115     86     45
  DEL PEAK 11(4P15.2) WILD-TYPE     37     35     73     38
D41V7, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                          69                            37
  CLUS_2                         115                            35
  CLUS_3                          86                            73
  CLUS_4                          45                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4P15.2) MUTATED      105    147     63
  DEL PEAK 11(4P15.2) WILD-TYPE     73     42     68
D41V8, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                         105                            73
  CLUS_2                         147                            42
  CLUS_3                          63                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4P15.2) MUTATED      134     60     56     53
  DEL PEAK 11(4P15.2) WILD-TYPE     50     27     68     27
D41V9, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                         134                            50
  CLUS_2                          60                            27
  CLUS_3                          56                            68
  CLUS_4                          53                            27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4P15.2) MUTATED       58     81    130     34
  DEL PEAK 11(4P15.2) WILD-TYPE     31     37     69     35
D41V10, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                          58                            31
  CLUS_2                          81                            37
  CLUS_3                         130                            69
  CLUS_4                          34                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4P15.2) MUTATED       37     79     28     67
  DEL PEAK 11(4P15.2) WILD-TYPE     24     36     38     25
D41V11, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                          37                            24
  CLUS_2                          79                            36
  CLUS_3                          28                            38
  CLUS_4                          67                            25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4P15.2) MUTATED       17    135     59
  DEL PEAK 11(4P15.2) WILD-TYPE     20     53     50
D41V12, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                          17                            20
  CLUS_2                         135                            53
  CLUS_3                          59                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 12(4Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q22.1) MUTATED       29     37     11     17
  DEL PEAK 12(4Q22.1) WILD-TYPE     12     13     23     12
D42V1, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          29                            12
  CLUS_2                          37                            13
  CLUS_3                          11                            23
  CLUS_4                          17                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q22.1) MUTATED       31     41     22
  DEL PEAK 12(4Q22.1) WILD-TYPE     16     15     29
D42V2, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          31                            16
  CLUS_2                          41                            15
  CLUS_3                          22                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(4Q22.1) MUTATED       31     44      8     45    128     29
  DEL PEAK 12(4Q22.1) WILD-TYPE     12     71     21     42     41     29
D42V3, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          31                            12
  CLUS_2                          44                            71
  CLUS_3                           8                            21
  CLUS_4                          45                            42
  CLUS_5                         128                            41
  CLUS_6                          29                            29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q22.1) MUTATED       47     62     34     59
  DEL PEAK 12(4Q22.1) WILD-TYPE     43     33     23     66
D42V4, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          47                            43
  CLUS_2                          62                            33
  CLUS_3                          34                            23
  CLUS_4                          59                            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q22.1) MUTATED       63     54     60     13
  DEL PEAK 12(4Q22.1) WILD-TYPE     42     55     26     13
D42V5, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          63                            42
  CLUS_2                          54                            55
  CLUS_3                          60                            26
  CLUS_4                          13                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(4Q22.1) MUTATED       49     40     37     39     11     14
  DEL PEAK 12(4Q22.1) WILD-TYPE     30     27     25     21     19     14
D42V6, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          49                            30
  CLUS_2                          40                            27
  CLUS_3                          37                            25
  CLUS_4                          39                            21
  CLUS_5                          11                            19
  CLUS_6                          14                            14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q22.1) MUTATED       58    107     85     33
  DEL PEAK 12(4Q22.1) WILD-TYPE     48     43     74     50
D42V7, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          58                            48
  CLUS_2                         107                            43
  CLUS_3                          85                            74
  CLUS_4                          33                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q22.1) MUTATED       97    122     64
  DEL PEAK 12(4Q22.1) WILD-TYPE     81     67     67
D42V8, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          97                            81
  CLUS_2                         122                            67
  CLUS_3                          64                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q22.1) MUTATED      119     47     49     57
  DEL PEAK 12(4Q22.1) WILD-TYPE     65     40     75     23
D42V9, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                         119                            65
  CLUS_2                          47                            40
  CLUS_3                          49                            75
  CLUS_4                          57                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q22.1) MUTATED       61     67    116     28
  DEL PEAK 12(4Q22.1) WILD-TYPE     28     51     83     41
D42V10, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          61                            28
  CLUS_2                          67                            51
  CLUS_3                         116                            83
  CLUS_4                          28                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q22.1) MUTATED       34     69     22     59
  DEL PEAK 12(4Q22.1) WILD-TYPE     27     46     44     33
D42V11, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          34                            27
  CLUS_2                          69                            46
  CLUS_3                          22                            44
  CLUS_4                          59                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q22.1) MUTATED       20    110     54
  DEL PEAK 12(4Q22.1) WILD-TYPE     17     78     55
D42V12, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          20                            17
  CLUS_2                         110                            78
  CLUS_3                          54                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 13(4Q32.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(4Q32.3) MUTATED       28     41     14     22
  DEL PEAK 13(4Q32.3) WILD-TYPE     13      9     20      7
D43V1, multiclass
        clus
vv       DEL PEAK 13(4Q32.3) MUTATED DEL PEAK 13(4Q32.3) WILD-TYPE
  CLUS_1                          28                            13
  CLUS_2                          41                             9
  CLUS_3                          14                            20
  CLUS_4                          22                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4Q32.3) MUTATED       32     45     28
  DEL PEAK 13(4Q32.3) WILD-TYPE     15     11     23
D43V2, multiclass
        clus
vv       DEL PEAK 13(4Q32.3) MUTATED DEL PEAK 13(4Q32.3) WILD-TYPE
  CLUS_1                          32                            15
  CLUS_2                          45                            11
  CLUS_3                          28                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(4Q32.3) MUTATED       30     52     11     49    146     41
  DEL PEAK 13(4Q32.3) WILD-TYPE     13     63     18     38     23     17
D43V3, multiclass
        clus
vv       DEL PEAK 13(4Q32.3) MUTATED DEL PEAK 13(4Q32.3) WILD-TYPE
  CLUS_1                          30                            13
  CLUS_2                          52                            63
  CLUS_3                          11                            18
  CLUS_4                          49                            38
  CLUS_5                         146                            23
  CLUS_6                          41                            17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(4Q32.3) MUTATED       60     71     41     67
  DEL PEAK 13(4Q32.3) WILD-TYPE     30     24     16     58
D43V4, multiclass
        clus
vv       DEL PEAK 13(4Q32.3) MUTATED DEL PEAK 13(4Q32.3) WILD-TYPE
  CLUS_1                          60                            30
  CLUS_2                          71                            24
  CLUS_3                          41                            16
  CLUS_4                          67                            58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(4Q32.3) MUTATED       65     67     68     16
  DEL PEAK 13(4Q32.3) WILD-TYPE     40     42     18     10
D43V5, multiclass
        clus
vv       DEL PEAK 13(4Q32.3) MUTATED DEL PEAK 13(4Q32.3) WILD-TYPE
  CLUS_1                          65                            40
  CLUS_2                          67                            42
  CLUS_3                          68                            18
  CLUS_4                          16                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(4Q32.3) MUTATED       56     44     41     47     13     15
  DEL PEAK 13(4Q32.3) WILD-TYPE     23     23     21     13     17     13
D43V6, multiclass
        clus
vv       DEL PEAK 13(4Q32.3) MUTATED DEL PEAK 13(4Q32.3) WILD-TYPE
  CLUS_1                          56                            23
  CLUS_2                          44                            23
  CLUS_3                          41                            21
  CLUS_4                          47                            13
  CLUS_5                          13                            17
  CLUS_6                          15                            13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(4Q32.3) MUTATED       69    121     97     40
  DEL PEAK 13(4Q32.3) WILD-TYPE     37     29     62     43
D43V7, multiclass
        clus
vv       DEL PEAK 13(4Q32.3) MUTATED DEL PEAK 13(4Q32.3) WILD-TYPE
  CLUS_1                          69                            37
  CLUS_2                         121                            29
  CLUS_3                          97                            62
  CLUS_4                          40                            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4Q32.3) MUTATED      110    144     73
  DEL PEAK 13(4Q32.3) WILD-TYPE     68     45     58
D43V8, multiclass
        clus
vv       DEL PEAK 13(4Q32.3) MUTATED DEL PEAK 13(4Q32.3) WILD-TYPE
  CLUS_1                         110                            68
  CLUS_2                         144                            45
  CLUS_3                          73                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(4Q32.3) MUTATED      130     65     57     62
  DEL PEAK 13(4Q32.3) WILD-TYPE     54     22     67     18
D43V9, multiclass
        clus
vv       DEL PEAK 13(4Q32.3) MUTATED DEL PEAK 13(4Q32.3) WILD-TYPE
  CLUS_1                         130                            54
  CLUS_2                          65                            22
  CLUS_3                          57                            67
  CLUS_4                          62                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(4Q32.3) MUTATED       66     75    140     33
  DEL PEAK 13(4Q32.3) WILD-TYPE     23     43     59     36
D43V10, multiclass
        clus
vv       DEL PEAK 13(4Q32.3) MUTATED DEL PEAK 13(4Q32.3) WILD-TYPE
  CLUS_1                          66                            23
  CLUS_2                          75                            43
  CLUS_3                         140                            59
  CLUS_4                          33                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(4Q32.3) MUTATED       38     80     29     71
  DEL PEAK 13(4Q32.3) WILD-TYPE     23     35     37     21
D43V11, multiclass
        clus
vv       DEL PEAK 13(4Q32.3) MUTATED DEL PEAK 13(4Q32.3) WILD-TYPE
  CLUS_1                          38                            23
  CLUS_2                          80                            35
  CLUS_3                          29                            37
  CLUS_4                          71                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4Q32.3) MUTATED       25    139     54
  DEL PEAK 13(4Q32.3) WILD-TYPE     12     49     55
D43V12, multiclass
        clus
vv       DEL PEAK 13(4Q32.3) MUTATED DEL PEAK 13(4Q32.3) WILD-TYPE
  CLUS_1                          25                            12
  CLUS_2                         139                            49
  CLUS_3                          54                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 14(4Q35.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(4Q35.2) MUTATED       28     39     18     22
  DEL PEAK 14(4Q35.2) WILD-TYPE     13     11     16      7
D44V1, multiclass
        clus
vv       DEL PEAK 14(4Q35.2) MUTATED DEL PEAK 14(4Q35.2) WILD-TYPE
  CLUS_1                          28                            13
  CLUS_2                          39                            11
  CLUS_3                          18                            16
  CLUS_4                          22                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(4Q35.2) MUTATED       33     43     31
  DEL PEAK 14(4Q35.2) WILD-TYPE     14     13     20
D44V2, multiclass
        clus
vv       DEL PEAK 14(4Q35.2) MUTATED DEL PEAK 14(4Q35.2) WILD-TYPE
  CLUS_1                          33                            14
  CLUS_2                          43                            13
  CLUS_3                          31                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(4Q35.2) MUTATED       30     56     10     51    146     38
  DEL PEAK 14(4Q35.2) WILD-TYPE     13     59     19     36     23     20
D44V3, multiclass
        clus
vv       DEL PEAK 14(4Q35.2) MUTATED DEL PEAK 14(4Q35.2) WILD-TYPE
  CLUS_1                          30                            13
  CLUS_2                          56                            59
  CLUS_3                          10                            19
  CLUS_4                          51                            36
  CLUS_5                         146                            23
  CLUS_6                          38                            20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(4Q35.2) MUTATED       60     72     39     68
  DEL PEAK 14(4Q35.2) WILD-TYPE     30     23     18     57
D44V4, multiclass
        clus
vv       DEL PEAK 14(4Q35.2) MUTATED DEL PEAK 14(4Q35.2) WILD-TYPE
  CLUS_1                          60                            30
  CLUS_2                          72                            23
  CLUS_3                          39                            18
  CLUS_4                          68                            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(4Q35.2) MUTATED       66     68     66     16
  DEL PEAK 14(4Q35.2) WILD-TYPE     39     41     20     10
D44V5, multiclass
        clus
vv       DEL PEAK 14(4Q35.2) MUTATED DEL PEAK 14(4Q35.2) WILD-TYPE
  CLUS_1                          66                            39
  CLUS_2                          68                            41
  CLUS_3                          66                            20
  CLUS_4                          16                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(4Q35.2) MUTATED       54     44     42     46     14     16
  DEL PEAK 14(4Q35.2) WILD-TYPE     25     23     20     14     16     12
D44V6, multiclass
        clus
vv       DEL PEAK 14(4Q35.2) MUTATED DEL PEAK 14(4Q35.2) WILD-TYPE
  CLUS_1                          54                            25
  CLUS_2                          44                            23
  CLUS_3                          42                            20
  CLUS_4                          46                            14
  CLUS_5                          14                            16
  CLUS_6                          16                            12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(4Q35.2) MUTATED       66    121    101     41
  DEL PEAK 14(4Q35.2) WILD-TYPE     40     29     58     42
D44V7, multiclass
        clus
vv       DEL PEAK 14(4Q35.2) MUTATED DEL PEAK 14(4Q35.2) WILD-TYPE
  CLUS_1                          66                            40
  CLUS_2                         121                            29
  CLUS_3                         101                            58
  CLUS_4                          41                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(4Q35.2) MUTATED      113    141     75
  DEL PEAK 14(4Q35.2) WILD-TYPE     65     48     56
D44V8, multiclass
        clus
vv       DEL PEAK 14(4Q35.2) MUTATED DEL PEAK 14(4Q35.2) WILD-TYPE
  CLUS_1                         113                            65
  CLUS_2                         141                            48
  CLUS_3                          75                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(4Q35.2) MUTATED      130     63     57     64
  DEL PEAK 14(4Q35.2) WILD-TYPE     54     24     67     16
D44V9, multiclass
        clus
vv       DEL PEAK 14(4Q35.2) MUTATED DEL PEAK 14(4Q35.2) WILD-TYPE
  CLUS_1                         130                            54
  CLUS_2                          63                            24
  CLUS_3                          57                            67
  CLUS_4                          64                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(4Q35.2) MUTATED       67     74    138     35
  DEL PEAK 14(4Q35.2) WILD-TYPE     22     44     61     34
D44V10, multiclass
        clus
vv       DEL PEAK 14(4Q35.2) MUTATED DEL PEAK 14(4Q35.2) WILD-TYPE
  CLUS_1                          67                            22
  CLUS_2                          74                            44
  CLUS_3                         138                            61
  CLUS_4                          35                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(4Q35.2) MUTATED       41     81     29     67
  DEL PEAK 14(4Q35.2) WILD-TYPE     20     34     37     25
D44V11, multiclass
        clus
vv       DEL PEAK 14(4Q35.2) MUTATED DEL PEAK 14(4Q35.2) WILD-TYPE
  CLUS_1                          41                            20
  CLUS_2                          81                            34
  CLUS_3                          29                            37
  CLUS_4                          67                            25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(4Q35.2) MUTATED       26    136     56
  DEL PEAK 14(4Q35.2) WILD-TYPE     11     52     53
D44V12, multiclass
        clus
vv       DEL PEAK 14(4Q35.2) MUTATED DEL PEAK 14(4Q35.2) WILD-TYPE
  CLUS_1                          26                            11
  CLUS_2                         136                            52
  CLUS_3                          56                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 15(5Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(5Q12.1) MUTATED       30     41     22     22
  DEL PEAK 15(5Q12.1) WILD-TYPE     11      9     12      7
D45V1, multiclass
        clus
vv       DEL PEAK 15(5Q12.1) MUTATED DEL PEAK 15(5Q12.1) WILD-TYPE
  CLUS_1                          30                            11
  CLUS_2                          41                             9
  CLUS_3                          22                            12
  CLUS_4                          22                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(5Q12.1) MUTATED       33     45     37
  DEL PEAK 15(5Q12.1) WILD-TYPE     14     11     14
D45V2, multiclass
        clus
vv       DEL PEAK 15(5Q12.1) MUTATED DEL PEAK 15(5Q12.1) WILD-TYPE
  CLUS_1                          33                            14
  CLUS_2                          45                            11
  CLUS_3                          37                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(5Q12.1) MUTATED       30     52     28     71    143     45
  DEL PEAK 15(5Q12.1) WILD-TYPE     13     63      1     16     26     13
D45V3, multiclass
        clus
vv       DEL PEAK 15(5Q12.1) MUTATED DEL PEAK 15(5Q12.1) WILD-TYPE
  CLUS_1                          30                            13
  CLUS_2                          52                            63
  CLUS_3                          28                             1
  CLUS_4                          71                            16
  CLUS_5                         143                            26
  CLUS_6                          45                            13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(5Q12.1) MUTATED       78     78     41     71
  DEL PEAK 15(5Q12.1) WILD-TYPE     12     17     16     54
D45V4, multiclass
        clus
vv       DEL PEAK 15(5Q12.1) MUTATED DEL PEAK 15(5Q12.1) WILD-TYPE
  CLUS_1                          78                            12
  CLUS_2                          78                            17
  CLUS_3                          41                            16
  CLUS_4                          71                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(5Q12.1) MUTATED       75     71     70     21
  DEL PEAK 15(5Q12.1) WILD-TYPE     30     38     16      5
D45V5, multiclass
        clus
vv       DEL PEAK 15(5Q12.1) MUTATED DEL PEAK 15(5Q12.1) WILD-TYPE
  CLUS_1                          75                            30
  CLUS_2                          71                            38
  CLUS_3                          70                            16
  CLUS_4                          21                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(5Q12.1) MUTATED       52     52     47     47     20     19
  DEL PEAK 15(5Q12.1) WILD-TYPE     27     15     15     13     10      9
D45V6, multiclass
        clus
vv       DEL PEAK 15(5Q12.1) MUTATED DEL PEAK 15(5Q12.1) WILD-TYPE
  CLUS_1                          52                            27
  CLUS_2                          52                            15
  CLUS_3                          47                            15
  CLUS_4                          47                            13
  CLUS_5                          20                            10
  CLUS_6                          19                             9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(5Q12.1) MUTATED       72    125    119     50
  DEL PEAK 15(5Q12.1) WILD-TYPE     34     25     40     33
D45V7, multiclass
        clus
vv       DEL PEAK 15(5Q12.1) MUTATED DEL PEAK 15(5Q12.1) WILD-TYPE
  CLUS_1                          72                            34
  CLUS_2                         125                            25
  CLUS_3                         119                            40
  CLUS_4                          50                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(5Q12.1) MUTATED      131    153     82
  DEL PEAK 15(5Q12.1) WILD-TYPE     47     36     49
D45V8, multiclass
        clus
vv       DEL PEAK 15(5Q12.1) MUTATED DEL PEAK 15(5Q12.1) WILD-TYPE
  CLUS_1                         131                            47
  CLUS_2                         153                            36
  CLUS_3                          82                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(5Q12.1) MUTATED      137     72     85     59
  DEL PEAK 15(5Q12.1) WILD-TYPE     47     15     39     21
D45V9, multiclass
        clus
vv       DEL PEAK 15(5Q12.1) MUTATED DEL PEAK 15(5Q12.1) WILD-TYPE
  CLUS_1                         137                            47
  CLUS_2                          72                            15
  CLUS_3                          85                            39
  CLUS_4                          59                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(5Q12.1) MUTATED       66     82    167     38
  DEL PEAK 15(5Q12.1) WILD-TYPE     23     36     32     31
D45V10, multiclass
        clus
vv       DEL PEAK 15(5Q12.1) MUTATED DEL PEAK 15(5Q12.1) WILD-TYPE
  CLUS_1                          66                            23
  CLUS_2                          82                            36
  CLUS_3                         167                            32
  CLUS_4                          38                            31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(5Q12.1) MUTATED       47     97     35     66
  DEL PEAK 15(5Q12.1) WILD-TYPE     14     18     31     26
D45V11, multiclass
        clus
vv       DEL PEAK 15(5Q12.1) MUTATED DEL PEAK 15(5Q12.1) WILD-TYPE
  CLUS_1                          47                            14
  CLUS_2                          97                            18
  CLUS_3                          35                            31
  CLUS_4                          66                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(5Q12.1) MUTATED       30    144     71
  DEL PEAK 15(5Q12.1) WILD-TYPE      7     44     38
D45V12, multiclass
        clus
vv       DEL PEAK 15(5Q12.1) MUTATED DEL PEAK 15(5Q12.1) WILD-TYPE
  CLUS_1                          30                             7
  CLUS_2                         144                            44
  CLUS_3                          71                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 16(5Q31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(5Q31.1) MUTATED       33     41     22     21
  DEL PEAK 16(5Q31.1) WILD-TYPE      8      9     12      8
D46V1, multiclass
        clus
vv       DEL PEAK 16(5Q31.1) MUTATED DEL PEAK 16(5Q31.1) WILD-TYPE
  CLUS_1                          33                             8
  CLUS_2                          41                             9
  CLUS_3                          22                            12
  CLUS_4                          21                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(5Q31.1) MUTATED       36     46     35
  DEL PEAK 16(5Q31.1) WILD-TYPE     11     10     16
D46V2, multiclass
        clus
vv       DEL PEAK 16(5Q31.1) MUTATED DEL PEAK 16(5Q31.1) WILD-TYPE
  CLUS_1                          36                            11
  CLUS_2                          46                            10
  CLUS_3                          35                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(5Q31.1) MUTATED       35     56     29     75    142     49
  DEL PEAK 16(5Q31.1) WILD-TYPE      8     59      0     12     27      9
D46V3, multiclass
        clus
vv       DEL PEAK 16(5Q31.1) MUTATED DEL PEAK 16(5Q31.1) WILD-TYPE
  CLUS_1                          35                             8
  CLUS_2                          56                            59
  CLUS_3                          29                             0
  CLUS_4                          75                            12
  CLUS_5                         142                            27
  CLUS_6                          49                             9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(5Q31.1) MUTATED       85     81     43     75
  DEL PEAK 16(5Q31.1) WILD-TYPE      5     14     14     50
D46V4, multiclass
        clus
vv       DEL PEAK 16(5Q31.1) MUTATED DEL PEAK 16(5Q31.1) WILD-TYPE
  CLUS_1                          85                             5
  CLUS_2                          81                            14
  CLUS_3                          43                            14
  CLUS_4                          75                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(5Q31.1) MUTATED       77     78     71     21
  DEL PEAK 16(5Q31.1) WILD-TYPE     28     31     15      5
D46V5, multiclass
        clus
vv       DEL PEAK 16(5Q31.1) MUTATED DEL PEAK 16(5Q31.1) WILD-TYPE
  CLUS_1                          77                            28
  CLUS_2                          78                            31
  CLUS_3                          71                            15
  CLUS_4                          21                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(5Q31.1) MUTATED       57     54     47     49     21     19
  DEL PEAK 16(5Q31.1) WILD-TYPE     22     13     15     11      9      9
D46V6, multiclass
        clus
vv       DEL PEAK 16(5Q31.1) MUTATED DEL PEAK 16(5Q31.1) WILD-TYPE
  CLUS_1                          57                            22
  CLUS_2                          54                            13
  CLUS_3                          47                            15
  CLUS_4                          49                            11
  CLUS_5                          21                             9
  CLUS_6                          19                             9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(5Q31.1) MUTATED       79    128    121     55
  DEL PEAK 16(5Q31.1) WILD-TYPE     27     22     38     28
D46V7, multiclass
        clus
vv       DEL PEAK 16(5Q31.1) MUTATED DEL PEAK 16(5Q31.1) WILD-TYPE
  CLUS_1                          79                            27
  CLUS_2                         128                            22
  CLUS_3                         121                            38
  CLUS_4                          55                            28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(5Q31.1) MUTATED      137    157     89
  DEL PEAK 16(5Q31.1) WILD-TYPE     41     32     42
D46V8, multiclass
        clus
vv       DEL PEAK 16(5Q31.1) MUTATED DEL PEAK 16(5Q31.1) WILD-TYPE
  CLUS_1                         137                            41
  CLUS_2                         157                            32
  CLUS_3                          89                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(5Q31.1) MUTATED      146     76     86     60
  DEL PEAK 16(5Q31.1) WILD-TYPE     38     11     38     20
D46V9, multiclass
        clus
vv       DEL PEAK 16(5Q31.1) MUTATED DEL PEAK 16(5Q31.1) WILD-TYPE
  CLUS_1                         146                            38
  CLUS_2                          76                            11
  CLUS_3                          86                            38
  CLUS_4                          60                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(5Q31.1) MUTATED       69     90    171     38
  DEL PEAK 16(5Q31.1) WILD-TYPE     20     28     28     31
D46V10, multiclass
        clus
vv       DEL PEAK 16(5Q31.1) MUTATED DEL PEAK 16(5Q31.1) WILD-TYPE
  CLUS_1                          69                            20
  CLUS_2                          90                            28
  CLUS_3                         171                            28
  CLUS_4                          38                            31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(5Q31.1) MUTATED       50    100     38     70
  DEL PEAK 16(5Q31.1) WILD-TYPE     11     15     28     22
D46V11, multiclass
        clus
vv       DEL PEAK 16(5Q31.1) MUTATED DEL PEAK 16(5Q31.1) WILD-TYPE
  CLUS_1                          50                            11
  CLUS_2                         100                            15
  CLUS_3                          38                            28
  CLUS_4                          70                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(5Q31.1) MUTATED       31    153     74
  DEL PEAK 16(5Q31.1) WILD-TYPE      6     35     35
D46V12, multiclass
        clus
vv       DEL PEAK 16(5Q31.1) MUTATED DEL PEAK 16(5Q31.1) WILD-TYPE
  CLUS_1                          31                             6
  CLUS_2                         153                            35
  CLUS_3                          74                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 17(6P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6P25.3) MUTATED        8     16      8      6
  DEL PEAK 17(6P25.3) WILD-TYPE     33     34     26     23
D47V1, multiclass
        clus
vv       DEL PEAK 17(6P25.3) MUTATED DEL PEAK 17(6P25.3) WILD-TYPE
  CLUS_1                           8                            33
  CLUS_2                          16                            34
  CLUS_3                           8                            26
  CLUS_4                           6                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6P25.3) MUTATED       10     18     10
  DEL PEAK 17(6P25.3) WILD-TYPE     37     38     41
D47V2, multiclass
        clus
vv       DEL PEAK 17(6P25.3) MUTATED DEL PEAK 17(6P25.3) WILD-TYPE
  CLUS_1                          10                            37
  CLUS_2                          18                            38
  CLUS_3                          10                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(6P25.3) MUTATED       14     24     13     14     62      7
  DEL PEAK 17(6P25.3) WILD-TYPE     29     91     16     73    107     51
D47V3, multiclass
        clus
vv       DEL PEAK 17(6P25.3) MUTATED DEL PEAK 17(6P25.3) WILD-TYPE
  CLUS_1                          14                            29
  CLUS_2                          24                            91
  CLUS_3                          13                            16
  CLUS_4                          14                            73
  CLUS_5                          62                           107
  CLUS_6                           7                            51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6P25.3) MUTATED       17     45     18     24
  DEL PEAK 17(6P25.3) WILD-TYPE     73     50     39    101
D47V4, multiclass
        clus
vv       DEL PEAK 17(6P25.3) MUTATED DEL PEAK 17(6P25.3) WILD-TYPE
  CLUS_1                          17                            73
  CLUS_2                          45                            50
  CLUS_3                          18                            39
  CLUS_4                          24                           101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6P25.3) MUTATED       26     31     23      7
  DEL PEAK 17(6P25.3) WILD-TYPE     79     78     63     19
D47V5, multiclass
        clus
vv       DEL PEAK 17(6P25.3) MUTATED DEL PEAK 17(6P25.3) WILD-TYPE
  CLUS_1                          26                            79
  CLUS_2                          31                            78
  CLUS_3                          23                            63
  CLUS_4                           7                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(6P25.3) MUTATED       26     13     18     14      7      9
  DEL PEAK 17(6P25.3) WILD-TYPE     53     54     44     46     23     19
D47V6, multiclass
        clus
vv       DEL PEAK 17(6P25.3) MUTATED DEL PEAK 17(6P25.3) WILD-TYPE
  CLUS_1                          26                            53
  CLUS_2                          13                            54
  CLUS_3                          18                            44
  CLUS_4                          14                            46
  CLUS_5                           7                            23
  CLUS_6                           9                            19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6P25.3) MUTATED       28     63     23     19
  DEL PEAK 17(6P25.3) WILD-TYPE     78     87    136     64
D47V7, multiclass
        clus
vv       DEL PEAK 17(6P25.3) MUTATED DEL PEAK 17(6P25.3) WILD-TYPE
  CLUS_1                          28                            78
  CLUS_2                          63                            87
  CLUS_3                          23                           136
  CLUS_4                          19                            64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6P25.3) MUTATED       37     78     18
  DEL PEAK 17(6P25.3) WILD-TYPE    141    111    113
D47V8, multiclass
        clus
vv       DEL PEAK 17(6P25.3) MUTATED DEL PEAK 17(6P25.3) WILD-TYPE
  CLUS_1                          37                           141
  CLUS_2                          78                           111
  CLUS_3                          18                           113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6P25.3) MUTATED       42     23     31     32
  DEL PEAK 17(6P25.3) WILD-TYPE    142     64     93     48
D47V9, multiclass
        clus
vv       DEL PEAK 17(6P25.3) MUTATED DEL PEAK 17(6P25.3) WILD-TYPE
  CLUS_1                          42                           142
  CLUS_2                          23                            64
  CLUS_3                          31                            93
  CLUS_4                          32                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6P25.3) MUTATED       39     32     45     12
  DEL PEAK 17(6P25.3) WILD-TYPE     50     86    154     57
D47V10, multiclass
        clus
vv       DEL PEAK 17(6P25.3) MUTATED DEL PEAK 17(6P25.3) WILD-TYPE
  CLUS_1                          39                            50
  CLUS_2                          32                            86
  CLUS_3                          45                           154
  CLUS_4                          12                            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6P25.3) MUTATED       15     31     13     31
  DEL PEAK 17(6P25.3) WILD-TYPE     46     84     53     61
D47V11, multiclass
        clus
vv       DEL PEAK 17(6P25.3) MUTATED DEL PEAK 17(6P25.3) WILD-TYPE
  CLUS_1                          15                            46
  CLUS_2                          31                            84
  CLUS_3                          13                            53
  CLUS_4                          31                            61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6P25.3) MUTATED        8     54     28
  DEL PEAK 17(6P25.3) WILD-TYPE     29    134     81
D47V12, multiclass
        clus
vv       DEL PEAK 17(6P25.3) MUTATED DEL PEAK 17(6P25.3) WILD-TYPE
  CLUS_1                           8                            29
  CLUS_2                          54                           134
  CLUS_3                          28                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 18(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(6Q26) MUTATED       10     20      5      6
  DEL PEAK 18(6Q26) WILD-TYPE     31     30     29     23
D48V1, multiclass
        clus
vv       DEL PEAK 18(6Q26) MUTATED DEL PEAK 18(6Q26) WILD-TYPE
  CLUS_1                        10                          31
  CLUS_2                        20                          30
  CLUS_3                         5                          29
  CLUS_4                         6                          23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(6Q26) MUTATED       11     23      7
  DEL PEAK 18(6Q26) WILD-TYPE     36     33     44
D48V2, multiclass
        clus
vv       DEL PEAK 18(6Q26) MUTATED DEL PEAK 18(6Q26) WILD-TYPE
  CLUS_1                        11                          36
  CLUS_2                        23                          33
  CLUS_3                         7                          44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(6Q26) MUTATED       13     21      6     19     64     12
  DEL PEAK 18(6Q26) WILD-TYPE     30     94     23     68    105     46
D48V3, multiclass
        clus
vv       DEL PEAK 18(6Q26) MUTATED DEL PEAK 18(6Q26) WILD-TYPE
  CLUS_1                        13                          30
  CLUS_2                        21                          94
  CLUS_3                         6                          23
  CLUS_4                        19                          68
  CLUS_5                        64                         105
  CLUS_6                        12                          46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(6Q26) MUTATED       21     34     24     23
  DEL PEAK 18(6Q26) WILD-TYPE     69     61     33    102
D48V4, multiclass
        clus
vv       DEL PEAK 18(6Q26) MUTATED DEL PEAK 18(6Q26) WILD-TYPE
  CLUS_1                        21                          69
  CLUS_2                        34                          61
  CLUS_3                        24                          33
  CLUS_4                        23                         102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(6Q26) MUTATED       27     35     25      4
  DEL PEAK 18(6Q26) WILD-TYPE     78     74     61     22
D48V5, multiclass
        clus
vv       DEL PEAK 18(6Q26) MUTATED DEL PEAK 18(6Q26) WILD-TYPE
  CLUS_1                        27                          78
  CLUS_2                        35                          74
  CLUS_3                        25                          61
  CLUS_4                         4                          22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(6Q26) MUTATED       21     20     19     15      7      9
  DEL PEAK 18(6Q26) WILD-TYPE     58     47     43     45     23     19
D48V6, multiclass
        clus
vv       DEL PEAK 18(6Q26) MUTATED DEL PEAK 18(6Q26) WILD-TYPE
  CLUS_1                        21                          58
  CLUS_2                        20                          47
  CLUS_3                        19                          43
  CLUS_4                        15                          45
  CLUS_5                         7                          23
  CLUS_6                         9                          19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(6Q26) MUTATED       23     59     35     17
  DEL PEAK 18(6Q26) WILD-TYPE     83     91    124     66
D48V7, multiclass
        clus
vv       DEL PEAK 18(6Q26) MUTATED DEL PEAK 18(6Q26) WILD-TYPE
  CLUS_1                        23                          83
  CLUS_2                        59                          91
  CLUS_3                        35                         124
  CLUS_4                        17                          66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(6Q26) MUTATED       39     66     29
  DEL PEAK 18(6Q26) WILD-TYPE    139    123    102
D48V8, multiclass
        clus
vv       DEL PEAK 18(6Q26) MUTATED DEL PEAK 18(6Q26) WILD-TYPE
  CLUS_1                        39                         139
  CLUS_2                        66                         123
  CLUS_3                        29                         102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(6Q26) MUTATED       57     22     22     27
  DEL PEAK 18(6Q26) WILD-TYPE    127     65    102     53
D48V9, multiclass
        clus
vv       DEL PEAK 18(6Q26) MUTATED DEL PEAK 18(6Q26) WILD-TYPE
  CLUS_1                        57                         127
  CLUS_2                        22                          65
  CLUS_3                        22                         102
  CLUS_4                        27                          53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(6Q26) MUTATED       33     32     44     19
  DEL PEAK 18(6Q26) WILD-TYPE     56     86    155     50
D48V10, multiclass
        clus
vv       DEL PEAK 18(6Q26) MUTATED DEL PEAK 18(6Q26) WILD-TYPE
  CLUS_1                        33                          56
  CLUS_2                        32                          86
  CLUS_3                        44                         155
  CLUS_4                        19                          50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(6Q26) MUTATED       13     33      7     35
  DEL PEAK 18(6Q26) WILD-TYPE     48     82     59     57
D48V11, multiclass
        clus
vv       DEL PEAK 18(6Q26) MUTATED DEL PEAK 18(6Q26) WILD-TYPE
  CLUS_1                        13                          48
  CLUS_2                        33                          82
  CLUS_3                         7                          59
  CLUS_4                        35                          57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(6Q26) MUTATED        9     59     20
  DEL PEAK 18(6Q26) WILD-TYPE     28    129     89
D48V12, multiclass
        clus
vv       DEL PEAK 18(6Q26) MUTATED DEL PEAK 18(6Q26) WILD-TYPE
  CLUS_1                         9                          28
  CLUS_2                        59                         129
  CLUS_3                        20                          89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 19(7Q11.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(7Q11.22) MUTATED        4      3      2      3
  DEL PEAK 19(7Q11.22) WILD-TYPE     37     47     32     26
D49V1, multiclass
        clus
vv       DEL PEAK 19(7Q11.22) MUTATED DEL PEAK 19(7Q11.22) WILD-TYPE
  CLUS_1                            4                             37
  CLUS_2                            3                             47
  CLUS_3                            2                             32
  CLUS_4                            3                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(7Q11.22) MUTATED        4      3      5
  DEL PEAK 19(7Q11.22) WILD-TYPE     43     53     46
D49V2, multiclass
        clus
vv       DEL PEAK 19(7Q11.22) MUTATED DEL PEAK 19(7Q11.22) WILD-TYPE
  CLUS_1                            4                             43
  CLUS_2                            3                             53
  CLUS_3                            5                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(7Q11.22) MUTATED        4      6      2      9     13     14
  DEL PEAK 19(7Q11.22) WILD-TYPE     39    109     27     78    156     44
D49V3, multiclass
        clus
vv       DEL PEAK 19(7Q11.22) MUTATED DEL PEAK 19(7Q11.22) WILD-TYPE
  CLUS_1                            4                             39
  CLUS_2                            6                            109
  CLUS_3                            2                             27
  CLUS_4                            9                             78
  CLUS_5                           13                            156
  CLUS_6                           14                             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(7Q11.22) MUTATED       10      7      7     12
  DEL PEAK 19(7Q11.22) WILD-TYPE     80     88     50    113
D49V4, multiclass
        clus
vv       DEL PEAK 19(7Q11.22) MUTATED DEL PEAK 19(7Q11.22) WILD-TYPE
  CLUS_1                           10                             80
  CLUS_2                            7                             88
  CLUS_3                            7                             50
  CLUS_4                           12                            113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(7Q11.22) MUTATED       14     10     10      0
  DEL PEAK 19(7Q11.22) WILD-TYPE     91     99     76     26
D49V5, multiclass
        clus
vv       DEL PEAK 19(7Q11.22) MUTATED DEL PEAK 19(7Q11.22) WILD-TYPE
  CLUS_1                           14                             91
  CLUS_2                           10                             99
  CLUS_3                           10                             76
  CLUS_4                            0                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(7Q11.22) MUTATED       13      5      6      6      2      2
  DEL PEAK 19(7Q11.22) WILD-TYPE     66     62     56     54     28     26
D49V6, multiclass
        clus
vv       DEL PEAK 19(7Q11.22) MUTATED DEL PEAK 19(7Q11.22) WILD-TYPE
  CLUS_1                           13                             66
  CLUS_2                            5                             62
  CLUS_3                            6                             56
  CLUS_4                            6                             54
  CLUS_5                            2                             28
  CLUS_6                            2                             26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(7Q11.22) MUTATED        6      7     28      7
  DEL PEAK 19(7Q11.22) WILD-TYPE    100    143    131     76
D49V7, multiclass
        clus
vv       DEL PEAK 19(7Q11.22) MUTATED DEL PEAK 19(7Q11.22) WILD-TYPE
  CLUS_1                            6                            100
  CLUS_2                            7                            143
  CLUS_3                           28                            131
  CLUS_4                            7                             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(7Q11.22) MUTATED       12     12     24
  DEL PEAK 19(7Q11.22) WILD-TYPE    166    177    107
D49V8, multiclass
        clus
vv       DEL PEAK 19(7Q11.22) MUTATED DEL PEAK 19(7Q11.22) WILD-TYPE
  CLUS_1                           12                            166
  CLUS_2                           12                            177
  CLUS_3                           24                            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(7Q11.22) MUTATED       23      7      9      6
  DEL PEAK 19(7Q11.22) WILD-TYPE    161     80    115     74
D49V9, multiclass
        clus
vv       DEL PEAK 19(7Q11.22) MUTATED DEL PEAK 19(7Q11.22) WILD-TYPE
  CLUS_1                           23                            161
  CLUS_2                            7                             80
  CLUS_3                            9                            115
  CLUS_4                            6                             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(7Q11.22) MUTATED        6     11     24      4
  DEL PEAK 19(7Q11.22) WILD-TYPE     83    107    175     65
D49V10, multiclass
        clus
vv       DEL PEAK 19(7Q11.22) MUTATED DEL PEAK 19(7Q11.22) WILD-TYPE
  CLUS_1                            6                             83
  CLUS_2                           11                            107
  CLUS_3                           24                            175
  CLUS_4                            4                             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(7Q11.22) MUTATED        5     15      7      8
  DEL PEAK 19(7Q11.22) WILD-TYPE     56    100     59     84
D49V11, multiclass
        clus
vv       DEL PEAK 19(7Q11.22) MUTATED DEL PEAK 19(7Q11.22) WILD-TYPE
  CLUS_1                            5                             56
  CLUS_2                           15                            100
  CLUS_3                            7                             59
  CLUS_4                            8                             84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(7Q11.22) MUTATED        3     24      8
  DEL PEAK 19(7Q11.22) WILD-TYPE     34    164    101
D49V12, multiclass
        clus
vv       DEL PEAK 19(7Q11.22) MUTATED DEL PEAK 19(7Q11.22) WILD-TYPE
  CLUS_1                            3                             34
  CLUS_2                           24                            164
  CLUS_3                            8                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 20(7Q36.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(7Q36.3) MUTATED       11      6      8      6
  DEL PEAK 20(7Q36.3) WILD-TYPE     30     44     26     23
D50V1, multiclass
        clus
vv       DEL PEAK 20(7Q36.3) MUTATED DEL PEAK 20(7Q36.3) WILD-TYPE
  CLUS_1                          11                            30
  CLUS_2                           6                            44
  CLUS_3                           8                            26
  CLUS_4                           6                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(7Q36.3) MUTATED       14      6     11
  DEL PEAK 20(7Q36.3) WILD-TYPE     33     50     40
D50V2, multiclass
        clus
vv       DEL PEAK 20(7Q36.3) MUTATED DEL PEAK 20(7Q36.3) WILD-TYPE
  CLUS_1                          14                            33
  CLUS_2                           6                            50
  CLUS_3                          11                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(7Q36.3) MUTATED       14     26      8     13     21     22
  DEL PEAK 20(7Q36.3) WILD-TYPE     29     89     21     74    148     36
D50V3, multiclass
        clus
vv       DEL PEAK 20(7Q36.3) MUTATED DEL PEAK 20(7Q36.3) WILD-TYPE
  CLUS_1                          14                            29
  CLUS_2                          26                            89
  CLUS_3                           8                            21
  CLUS_4                          13                            74
  CLUS_5                          21                           148
  CLUS_6                          22                            36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(7Q36.3) MUTATED       19     12     16     31
  DEL PEAK 20(7Q36.3) WILD-TYPE     71     83     41     94
D50V4, multiclass
        clus
vv       DEL PEAK 20(7Q36.3) MUTATED DEL PEAK 20(7Q36.3) WILD-TYPE
  CLUS_1                          19                            71
  CLUS_2                          12                            83
  CLUS_3                          16                            41
  CLUS_4                          31                            94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(7Q36.3) MUTATED       27     21     13      5
  DEL PEAK 20(7Q36.3) WILD-TYPE     78     88     73     21
D50V5, multiclass
        clus
vv       DEL PEAK 20(7Q36.3) MUTATED DEL PEAK 20(7Q36.3) WILD-TYPE
  CLUS_1                          27                            78
  CLUS_2                          21                            88
  CLUS_3                          13                            73
  CLUS_4                           5                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(7Q36.3) MUTATED       21     10     13     13      2      7
  DEL PEAK 20(7Q36.3) WILD-TYPE     58     57     49     47     28     21
D50V6, multiclass
        clus
vv       DEL PEAK 20(7Q36.3) MUTATED DEL PEAK 20(7Q36.3) WILD-TYPE
  CLUS_1                          21                            58
  CLUS_2                          10                            57
  CLUS_3                          13                            49
  CLUS_4                          13                            47
  CLUS_5                           2                            28
  CLUS_6                           7                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(7Q36.3) MUTATED       25     18     49     12
  DEL PEAK 20(7Q36.3) WILD-TYPE     81    132    110     71
D50V7, multiclass
        clus
vv       DEL PEAK 20(7Q36.3) MUTATED DEL PEAK 20(7Q36.3) WILD-TYPE
  CLUS_1                          25                            81
  CLUS_2                          18                           132
  CLUS_3                          49                           110
  CLUS_4                          12                            71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(7Q36.3) MUTATED       44     24     36
  DEL PEAK 20(7Q36.3) WILD-TYPE    134    165     95
D50V8, multiclass
        clus
vv       DEL PEAK 20(7Q36.3) MUTATED DEL PEAK 20(7Q36.3) WILD-TYPE
  CLUS_1                          44                           134
  CLUS_2                          24                           165
  CLUS_3                          36                            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(7Q36.3) MUTATED       40     22     22     13
  DEL PEAK 20(7Q36.3) WILD-TYPE    144     65    102     67
D50V9, multiclass
        clus
vv       DEL PEAK 20(7Q36.3) MUTATED DEL PEAK 20(7Q36.3) WILD-TYPE
  CLUS_1                          40                           144
  CLUS_2                          22                            65
  CLUS_3                          22                           102
  CLUS_4                          13                            67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(7Q36.3) MUTATED       14     29     49      5
  DEL PEAK 20(7Q36.3) WILD-TYPE     75     89    150     64
D50V10, multiclass
        clus
vv       DEL PEAK 20(7Q36.3) MUTATED DEL PEAK 20(7Q36.3) WILD-TYPE
  CLUS_1                          14                            75
  CLUS_2                          29                            89
  CLUS_3                          49                           150
  CLUS_4                           5                            64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(7Q36.3) MUTATED       18     25      9     18
  DEL PEAK 20(7Q36.3) WILD-TYPE     43     90     57     74
D50V11, multiclass
        clus
vv       DEL PEAK 20(7Q36.3) MUTATED DEL PEAK 20(7Q36.3) WILD-TYPE
  CLUS_1                          18                            43
  CLUS_2                          25                            90
  CLUS_3                           9                            57
  CLUS_4                          18                            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(7Q36.3) MUTATED       14     45     11
  DEL PEAK 20(7Q36.3) WILD-TYPE     23    143     98
D50V12, multiclass
        clus
vv       DEL PEAK 20(7Q36.3) MUTATED DEL PEAK 20(7Q36.3) WILD-TYPE
  CLUS_1                          14                            23
  CLUS_2                          45                           143
  CLUS_3                          11                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 21(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(8P23.2) MUTATED       27     37     25     17
  DEL PEAK 21(8P23.2) WILD-TYPE     14     13      9     12
D51V1, multiclass
        clus
vv       DEL PEAK 21(8P23.2) MUTATED DEL PEAK 21(8P23.2) WILD-TYPE
  CLUS_1                          27                            14
  CLUS_2                          37                            13
  CLUS_3                          25                             9
  CLUS_4                          17                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(8P23.2) MUTATED       30     40     36
  DEL PEAK 21(8P23.2) WILD-TYPE     17     16     15
D51V2, multiclass
        clus
vv       DEL PEAK 21(8P23.2) MUTATED DEL PEAK 21(8P23.2) WILD-TYPE
  CLUS_1                          30                            17
  CLUS_2                          40                            16
  CLUS_3                          36                            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(8P23.2) MUTATED       36     57     19     57    127     45
  DEL PEAK 21(8P23.2) WILD-TYPE      7     58     10     30     42     13
D51V3, multiclass
        clus
vv       DEL PEAK 21(8P23.2) MUTATED DEL PEAK 21(8P23.2) WILD-TYPE
  CLUS_1                          36                             7
  CLUS_2                          57                            58
  CLUS_3                          19                            10
  CLUS_4                          57                            30
  CLUS_5                         127                            42
  CLUS_6                          45                            13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(8P23.2) MUTATED       62     71     43     72
  DEL PEAK 21(8P23.2) WILD-TYPE     28     24     14     53
D51V4, multiclass
        clus
vv       DEL PEAK 21(8P23.2) MUTATED DEL PEAK 21(8P23.2) WILD-TYPE
  CLUS_1                          62                            28
  CLUS_2                          71                            24
  CLUS_3                          43                            14
  CLUS_4                          72                            53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(8P23.2) MUTATED       65     76     63     18
  DEL PEAK 21(8P23.2) WILD-TYPE     40     33     23      8
D51V5, multiclass
        clus
vv       DEL PEAK 21(8P23.2) MUTATED DEL PEAK 21(8P23.2) WILD-TYPE
  CLUS_1                          65                            40
  CLUS_2                          76                            33
  CLUS_3                          63                            23
  CLUS_4                          18                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(8P23.2) MUTATED       53     45     42     46     20     16
  DEL PEAK 21(8P23.2) WILD-TYPE     26     22     20     14     10     12
D51V6, multiclass
        clus
vv       DEL PEAK 21(8P23.2) MUTATED DEL PEAK 21(8P23.2) WILD-TYPE
  CLUS_1                          53                            26
  CLUS_2                          45                            22
  CLUS_3                          42                            20
  CLUS_4                          46                            14
  CLUS_5                          20                            10
  CLUS_6                          16                            12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(8P23.2) MUTATED       69    113    106     50
  DEL PEAK 21(8P23.2) WILD-TYPE     37     37     53     33
D51V7, multiclass
        clus
vv       DEL PEAK 21(8P23.2) MUTATED DEL PEAK 21(8P23.2) WILD-TYPE
  CLUS_1                          69                            37
  CLUS_2                         113                            37
  CLUS_3                         106                            53
  CLUS_4                          50                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(8P23.2) MUTATED      111    138     89
  DEL PEAK 21(8P23.2) WILD-TYPE     67     51     42
D51V8, multiclass
        clus
vv       DEL PEAK 21(8P23.2) MUTATED DEL PEAK 21(8P23.2) WILD-TYPE
  CLUS_1                         111                            67
  CLUS_2                         138                            51
  CLUS_3                          89                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(8P23.2) MUTATED      132     64     70     58
  DEL PEAK 21(8P23.2) WILD-TYPE     52     23     54     22
D51V9, multiclass
        clus
vv       DEL PEAK 21(8P23.2) MUTATED DEL PEAK 21(8P23.2) WILD-TYPE
  CLUS_1                         132                            52
  CLUS_2                          64                            23
  CLUS_3                          70                            54
  CLUS_4                          58                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(8P23.2) MUTATED       65     79    142     38
  DEL PEAK 21(8P23.2) WILD-TYPE     24     39     57     31
D51V10, multiclass
        clus
vv       DEL PEAK 21(8P23.2) MUTATED DEL PEAK 21(8P23.2) WILD-TYPE
  CLUS_1                          65                            24
  CLUS_2                          79                            39
  CLUS_3                         142                            57
  CLUS_4                          38                            31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(8P23.2) MUTATED       43     79     36     66
  DEL PEAK 21(8P23.2) WILD-TYPE     18     36     30     26
D51V11, multiclass
        clus
vv       DEL PEAK 21(8P23.2) MUTATED DEL PEAK 21(8P23.2) WILD-TYPE
  CLUS_1                          43                            18
  CLUS_2                          79                            36
  CLUS_3                          36                            30
  CLUS_4                          66                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(8P23.2) MUTATED       29    133     62
  DEL PEAK 21(8P23.2) WILD-TYPE      8     55     47
D51V12, multiclass
        clus
vv       DEL PEAK 21(8P23.2) MUTATED DEL PEAK 21(8P23.2) WILD-TYPE
  CLUS_1                          29                             8
  CLUS_2                         133                            55
  CLUS_3                          62                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 22(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9P23) MUTATED       35     29     20     17
  DEL PEAK 22(9P23) WILD-TYPE      6     21     14     12
D52V1, multiclass
        clus
vv       DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE
  CLUS_1                        35                           6
  CLUS_2                        29                          21
  CLUS_3                        20                          14
  CLUS_4                        17                          12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9P23) MUTATED       40     30     31
  DEL PEAK 22(9P23) WILD-TYPE      7     26     20
D52V2, multiclass
        clus
vv       DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE
  CLUS_1                        40                           7
  CLUS_2                        30                          26
  CLUS_3                        31                          20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(9P23) MUTATED       33     54     25     75    105     40
  DEL PEAK 22(9P23) WILD-TYPE     10     61      4     12     64     18
D52V3, multiclass
        clus
vv       DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE
  CLUS_1                        33                          10
  CLUS_2                        54                          61
  CLUS_3                        25                           4
  CLUS_4                        75                          12
  CLUS_5                       105                          64
  CLUS_6                        40                          18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9P23) MUTATED       74     58     37     75
  DEL PEAK 22(9P23) WILD-TYPE     16     37     20     50
D52V4, multiclass
        clus
vv       DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE
  CLUS_1                        74                          16
  CLUS_2                        58                          37
  CLUS_3                        37                          20
  CLUS_4                        75                          50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9P23) MUTATED       69     73     53     20
  DEL PEAK 22(9P23) WILD-TYPE     36     36     33      6
D52V5, multiclass
        clus
vv       DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE
  CLUS_1                        69                          36
  CLUS_2                        73                          36
  CLUS_3                        53                          33
  CLUS_4                        20                           6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(9P23) MUTATED       44     50     46     37     21     17
  DEL PEAK 22(9P23) WILD-TYPE     35     17     16     23      9     11
D52V6, multiclass
        clus
vv       DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE
  CLUS_1                        44                          35
  CLUS_2                        50                          17
  CLUS_3                        46                          16
  CLUS_4                        37                          23
  CLUS_5                        21                           9
  CLUS_6                        17                          11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9P23) MUTATED       83     87    115     44
  DEL PEAK 22(9P23) WILD-TYPE     23     63     44     39
D52V7, multiclass
        clus
vv       DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE
  CLUS_1                        83                          23
  CLUS_2                        87                          63
  CLUS_3                       115                          44
  CLUS_4                        44                          39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9P23) MUTATED      136    112     81
  DEL PEAK 22(9P23) WILD-TYPE     42     77     50
D52V8, multiclass
        clus
vv       DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE
  CLUS_1                       136                          42
  CLUS_2                       112                          77
  CLUS_3                        81                          50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9P23) MUTATED      132     68     74     43
  DEL PEAK 22(9P23) WILD-TYPE     52     19     50     37
D52V9, multiclass
        clus
vv       DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE
  CLUS_1                       132                          52
  CLUS_2                        68                          19
  CLUS_3                        74                          50
  CLUS_4                        43                          37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9P23) MUTATED       50     81    151     35
  DEL PEAK 22(9P23) WILD-TYPE     39     37     48     34
D52V10, multiclass
        clus
vv       DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE
  CLUS_1                        50                          39
  CLUS_2                        81                          37
  CLUS_3                       151                          48
  CLUS_4                        35                          34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9P23) MUTATED       45     90     28     60
  DEL PEAK 22(9P23) WILD-TYPE     16     25     38     32
D52V11, multiclass
        clus
vv       DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE
  CLUS_1                        45                          16
  CLUS_2                        90                          25
  CLUS_3                        28                          38
  CLUS_4                        60                          32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9P23) MUTATED       30    130     63
  DEL PEAK 22(9P23) WILD-TYPE      7     58     46
D52V12, multiclass
        clus
vv       DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE
  CLUS_1                        30                           7
  CLUS_2                       130                          58
  CLUS_3                        63                          46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 23(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(9P21.3) MUTATED       35     39     24     19
  DEL PEAK 23(9P21.3) WILD-TYPE      6     11     10     10
D53V1, multiclass
        clus
vv       DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE
  CLUS_1                          35                             6
  CLUS_2                          39                            11
  CLUS_3                          24                            10
  CLUS_4                          19                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(9P21.3) MUTATED       39     43     35
  DEL PEAK 23(9P21.3) WILD-TYPE      8     13     16
D53V2, multiclass
        clus
vv       DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE
  CLUS_1                          39                             8
  CLUS_2                          43                            13
  CLUS_3                          35                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(9P21.3) MUTATED       37     63     27     81    135     45
  DEL PEAK 23(9P21.3) WILD-TYPE      6     52      2      6     34     13
D53V3, multiclass
        clus
vv       DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE
  CLUS_1                          37                             6
  CLUS_2                          63                            52
  CLUS_3                          27                             2
  CLUS_4                          81                             6
  CLUS_5                         135                            34
  CLUS_6                          45                            13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(9P21.3) MUTATED       78     75     42     92
  DEL PEAK 23(9P21.3) WILD-TYPE     12     20     15     33
D53V4, multiclass
        clus
vv       DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE
  CLUS_1                          78                            12
  CLUS_2                          75                            20
  CLUS_3                          42                            15
  CLUS_4                          92                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(9P21.3) MUTATED       80     85     71     19
  DEL PEAK 23(9P21.3) WILD-TYPE     25     24     15      7
D53V5, multiclass
        clus
vv       DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE
  CLUS_1                          80                            25
  CLUS_2                          85                            24
  CLUS_3                          71                            15
  CLUS_4                          19                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(9P21.3) MUTATED       55     56     49     51     23     21
  DEL PEAK 23(9P21.3) WILD-TYPE     24     11     13      9      7      7
D53V6, multiclass
        clus
vv       DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE
  CLUS_1                          55                            24
  CLUS_2                          56                            11
  CLUS_3                          49                            13
  CLUS_4                          51                             9
  CLUS_5                          23                             7
  CLUS_6                          21                             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(9P21.3) MUTATED       93    111    127     54
  DEL PEAK 23(9P21.3) WILD-TYPE     13     39     32     29
D53V7, multiclass
        clus
vv       DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE
  CLUS_1                          93                            13
  CLUS_2                         111                            39
  CLUS_3                         127                            32
  CLUS_4                          54                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(9P21.3) MUTATED      150    141     94
  DEL PEAK 23(9P21.3) WILD-TYPE     28     48     37
D53V8, multiclass
        clus
vv       DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE
  CLUS_1                         150                            28
  CLUS_2                         141                            48
  CLUS_3                          94                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(9P21.3) MUTATED      148     72     93     59
  DEL PEAK 23(9P21.3) WILD-TYPE     36     15     31     21
D53V9, multiclass
        clus
vv       DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE
  CLUS_1                         148                            36
  CLUS_2                          72                            15
  CLUS_3                          93                            31
  CLUS_4                          59                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(9P21.3) MUTATED       68     95    165     44
  DEL PEAK 23(9P21.3) WILD-TYPE     21     23     34     25
D53V10, multiclass
        clus
vv       DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE
  CLUS_1                          68                            21
  CLUS_2                          95                            23
  CLUS_3                         165                            34
  CLUS_4                          44                            25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(9P21.3) MUTATED       53     99     41     69
  DEL PEAK 23(9P21.3) WILD-TYPE      8     16     25     23
D53V11, multiclass
        clus
vv       DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE
  CLUS_1                          53                             8
  CLUS_2                          99                            16
  CLUS_3                          41                            25
  CLUS_4                          69                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(9P21.3) MUTATED       34    149     79
  DEL PEAK 23(9P21.3) WILD-TYPE      3     39     30
D53V12, multiclass
        clus
vv       DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE
  CLUS_1                          34                             3
  CLUS_2                         149                            39
  CLUS_3                          79                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 24(9P21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(9P21.1) MUTATED       30     31     21     15
  DEL PEAK 24(9P21.1) WILD-TYPE     11     19     13     14
D54V1, multiclass
        clus
vv       DEL PEAK 24(9P21.1) MUTATED DEL PEAK 24(9P21.1) WILD-TYPE
  CLUS_1                          30                            11
  CLUS_2                          31                            19
  CLUS_3                          21                            13
  CLUS_4                          15                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(9P21.1) MUTATED       34     33     30
  DEL PEAK 24(9P21.1) WILD-TYPE     13     23     21
D54V2, multiclass
        clus
vv       DEL PEAK 24(9P21.1) MUTATED DEL PEAK 24(9P21.1) WILD-TYPE
  CLUS_1                          34                            13
  CLUS_2                          33                            23
  CLUS_3                          30                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(9P21.1) MUTATED       28     55     25     77    102     39
  DEL PEAK 24(9P21.1) WILD-TYPE     15     60      4     10     67     19
D54V3, multiclass
        clus
vv       DEL PEAK 24(9P21.1) MUTATED DEL PEAK 24(9P21.1) WILD-TYPE
  CLUS_1                          28                            15
  CLUS_2                          55                            60
  CLUS_3                          25                             4
  CLUS_4                          77                            10
  CLUS_5                         102                            67
  CLUS_6                          39                            19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(9P21.1) MUTATED       69     56     39     78
  DEL PEAK 24(9P21.1) WILD-TYPE     21     39     18     47
D54V4, multiclass
        clus
vv       DEL PEAK 24(9P21.1) MUTATED DEL PEAK 24(9P21.1) WILD-TYPE
  CLUS_1                          69                            21
  CLUS_2                          56                            39
  CLUS_3                          39                            18
  CLUS_4                          78                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(9P21.1) MUTATED       68     77     50     17
  DEL PEAK 24(9P21.1) WILD-TYPE     37     32     36      9
D54V5, multiclass
        clus
vv       DEL PEAK 24(9P21.1) MUTATED DEL PEAK 24(9P21.1) WILD-TYPE
  CLUS_1                          68                            37
  CLUS_2                          77                            32
  CLUS_3                          50                            36
  CLUS_4                          17                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(9P21.1) MUTATED       46     42     45     38     22     19
  DEL PEAK 24(9P21.1) WILD-TYPE     33     25     17     22      8      9
D54V6, multiclass
        clus
vv       DEL PEAK 24(9P21.1) MUTATED DEL PEAK 24(9P21.1) WILD-TYPE
  CLUS_1                          46                            33
  CLUS_2                          42                            25
  CLUS_3                          45                            17
  CLUS_4                          38                            22
  CLUS_5                          22                             8
  CLUS_6                          19                             9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(9P21.1) MUTATED       83     85    111     44
  DEL PEAK 24(9P21.1) WILD-TYPE     23     65     48     39
D54V7, multiclass
        clus
vv       DEL PEAK 24(9P21.1) MUTATED DEL PEAK 24(9P21.1) WILD-TYPE
  CLUS_1                          83                            23
  CLUS_2                          85                            65
  CLUS_3                         111                            48
  CLUS_4                          44                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(9P21.1) MUTATED      135    106     82
  DEL PEAK 24(9P21.1) WILD-TYPE     43     83     49
D54V8, multiclass
        clus
vv       DEL PEAK 24(9P21.1) MUTATED DEL PEAK 24(9P21.1) WILD-TYPE
  CLUS_1                         135                            43
  CLUS_2                         106                            83
  CLUS_3                          82                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(9P21.1) MUTATED      125     62     81     43
  DEL PEAK 24(9P21.1) WILD-TYPE     59     25     43     37
D54V9, multiclass
        clus
vv       DEL PEAK 24(9P21.1) MUTATED DEL PEAK 24(9P21.1) WILD-TYPE
  CLUS_1                         125                            59
  CLUS_2                          62                            25
  CLUS_3                          81                            43
  CLUS_4                          43                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(9P21.1) MUTATED       51     84    140     36
  DEL PEAK 24(9P21.1) WILD-TYPE     38     34     59     33
D54V10, multiclass
        clus
vv       DEL PEAK 24(9P21.1) MUTATED DEL PEAK 24(9P21.1) WILD-TYPE
  CLUS_1                          51                            38
  CLUS_2                          84                            34
  CLUS_3                         140                            59
  CLUS_4                          36                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(9P21.1) MUTATED       45     88     33     56
  DEL PEAK 24(9P21.1) WILD-TYPE     16     27     33     36
D54V11, multiclass
        clus
vv       DEL PEAK 24(9P21.1) MUTATED DEL PEAK 24(9P21.1) WILD-TYPE
  CLUS_1                          45                            16
  CLUS_2                          88                            27
  CLUS_3                          33                            33
  CLUS_4                          56                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(9P21.1) MUTATED       28    128     66
  DEL PEAK 24(9P21.1) WILD-TYPE      9     60     43
D54V12, multiclass
        clus
vv       DEL PEAK 24(9P21.1) MUTATED DEL PEAK 24(9P21.1) WILD-TYPE
  CLUS_1                          28                             9
  CLUS_2                         128                            60
  CLUS_3                          66                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 25(9Q21.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(9Q21.11) MUTATED       27     13     20     15
  DEL PEAK 25(9Q21.11) WILD-TYPE     14     37     14     14
D55V1, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           27                             14
  CLUS_2                           13                             37
  CLUS_3                           20                             14
  CLUS_4                           15                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(9Q21.11) MUTATED       31     14     30
  DEL PEAK 25(9Q21.11) WILD-TYPE     16     42     21
D55V2, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           31                             16
  CLUS_2                           14                             42
  CLUS_3                           30                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(9Q21.11) MUTATED       27     50     20     60     52     42
  DEL PEAK 25(9Q21.11) WILD-TYPE     16     65      9     27    117     16
D55V3, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           27                             16
  CLUS_2                           50                             65
  CLUS_3                           20                              9
  CLUS_4                           60                             27
  CLUS_5                           52                            117
  CLUS_6                           42                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(9Q21.11) MUTATED       66     23     27     68
  DEL PEAK 25(9Q21.11) WILD-TYPE     24     72     30     57
D55V4, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           66                             24
  CLUS_2                           23                             72
  CLUS_3                           27                             30
  CLUS_4                           68                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(9Q21.11) MUTATED       53     62     36     16
  DEL PEAK 25(9Q21.11) WILD-TYPE     52     47     50     10
D55V5, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           53                             52
  CLUS_2                           62                             47
  CLUS_3                           36                             50
  CLUS_4                           16                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(9Q21.11) MUTATED       31     29     41     35     16     15
  DEL PEAK 25(9Q21.11) WILD-TYPE     48     38     21     25     14     13
D55V6, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           31                             48
  CLUS_2                           29                             38
  CLUS_3                           41                             21
  CLUS_4                           35                             25
  CLUS_5                           16                             14
  CLUS_6                           15                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(9Q21.11) MUTATED       68     36    104     41
  DEL PEAK 25(9Q21.11) WILD-TYPE     38    114     55     42
D55V7, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           68                             38
  CLUS_2                           36                            114
  CLUS_3                          104                             55
  CLUS_4                           41                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(9Q21.11) MUTATED      125     46     78
  DEL PEAK 25(9Q21.11) WILD-TYPE     53    143     53
D55V8, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                          125                             53
  CLUS_2                           46                            143
  CLUS_3                           78                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(9Q21.11) MUTATED       85     60     69     23
  DEL PEAK 25(9Q21.11) WILD-TYPE     99     27     55     57
D55V9, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           85                             99
  CLUS_2                           60                             27
  CLUS_3                           69                             55
  CLUS_4                           23                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(9Q21.11) MUTATED       23     54    129     31
  DEL PEAK 25(9Q21.11) WILD-TYPE     66     64     70     38
D55V10, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           23                             66
  CLUS_2                           54                             64
  CLUS_3                          129                             70
  CLUS_4                           31                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(9Q21.11) MUTATED       42     61     24     46
  DEL PEAK 25(9Q21.11) WILD-TYPE     19     54     42     46
D55V11, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           42                             19
  CLUS_2                           61                             54
  CLUS_3                           24                             42
  CLUS_4                           46                             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(9Q21.11) MUTATED       27     96     50
  DEL PEAK 25(9Q21.11) WILD-TYPE     10     92     59
D55V12, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           27                             10
  CLUS_2                           96                             92
  CLUS_3                           50                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 26(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(10P15.3) MUTATED       16     26     13     14
  DEL PEAK 26(10P15.3) WILD-TYPE     25     24     21     15
D56V1, multiclass
        clus
vv       DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE
  CLUS_1                           16                             25
  CLUS_2                           26                             24
  CLUS_3                           13                             21
  CLUS_4                           14                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(10P15.3) MUTATED       19     29     21
  DEL PEAK 26(10P15.3) WILD-TYPE     28     27     30
D56V2, multiclass
        clus
vv       DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE
  CLUS_1                           19                             28
  CLUS_2                           29                             27
  CLUS_3                           21                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(10P15.3) MUTATED       21     34     17     27    103     26
  DEL PEAK 26(10P15.3) WILD-TYPE     22     81     12     60     66     32
D56V3, multiclass
        clus
vv       DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE
  CLUS_1                           21                             22
  CLUS_2                           34                             81
  CLUS_3                           17                             12
  CLUS_4                           27                             60
  CLUS_5                          103                             66
  CLUS_6                           26                             32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(10P15.3) MUTATED       34     60     35     42
  DEL PEAK 26(10P15.3) WILD-TYPE     56     35     22     83
D56V4, multiclass
        clus
vv       DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE
  CLUS_1                           34                             56
  CLUS_2                           60                             35
  CLUS_3                           35                             22
  CLUS_4                           42                             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(10P15.3) MUTATED       43     41     44     16
  DEL PEAK 26(10P15.3) WILD-TYPE     62     68     42     10
D56V5, multiclass
        clus
vv       DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE
  CLUS_1                           43                             62
  CLUS_2                           41                             68
  CLUS_3                           44                             42
  CLUS_4                           16                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(10P15.3) MUTATED       33     27     26     35     11     12
  DEL PEAK 26(10P15.3) WILD-TYPE     46     40     36     25     19     16
D56V6, multiclass
        clus
vv       DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE
  CLUS_1                           33                             46
  CLUS_2                           27                             40
  CLUS_3                           26                             36
  CLUS_4                           35                             25
  CLUS_5                           11                             19
  CLUS_6                           12                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(10P15.3) MUTATED       37     95     69     26
  DEL PEAK 26(10P15.3) WILD-TYPE     69     55     90     57
D56V7, multiclass
        clus
vv       DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE
  CLUS_1                           37                             69
  CLUS_2                           95                             55
  CLUS_3                           69                             90
  CLUS_4                           26                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(10P15.3) MUTATED       71    108     48
  DEL PEAK 26(10P15.3) WILD-TYPE    107     81     83
D56V8, multiclass
        clus
vv       DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE
  CLUS_1                           71                            107
  CLUS_2                          108                             81
  CLUS_3                           48                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(10P15.3) MUTATED       96     40     35     50
  DEL PEAK 26(10P15.3) WILD-TYPE     88     47     89     30
D56V9, multiclass
        clus
vv       DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE
  CLUS_1                           96                             88
  CLUS_2                           40                             47
  CLUS_3                           35                             89
  CLUS_4                           50                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(10P15.3) MUTATED       63     45     97     16
  DEL PEAK 26(10P15.3) WILD-TYPE     26     73    102     53
D56V10, multiclass
        clus
vv       DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE
  CLUS_1                           63                             26
  CLUS_2                           45                             73
  CLUS_3                           97                            102
  CLUS_4                           16                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(10P15.3) MUTATED       26     63     14     49
  DEL PEAK 26(10P15.3) WILD-TYPE     35     52     52     43
D56V11, multiclass
        clus
vv       DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE
  CLUS_1                           26                             35
  CLUS_2                           63                             52
  CLUS_3                           14                             52
  CLUS_4                           49                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(10P15.3) MUTATED       18     95     39
  DEL PEAK 26(10P15.3) WILD-TYPE     19     93     70
D56V12, multiclass
        clus
vv       DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE
  CLUS_1                           18                             19
  CLUS_2                           95                             93
  CLUS_3                           39                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 27(10P15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(10P15.1) MUTATED       14     26     12     14
  DEL PEAK 27(10P15.1) WILD-TYPE     27     24     22     15
D57V1, multiclass
        clus
vv       DEL PEAK 27(10P15.1) MUTATED DEL PEAK 27(10P15.1) WILD-TYPE
  CLUS_1                           14                             27
  CLUS_2                           26                             24
  CLUS_3                           12                             22
  CLUS_4                           14                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(10P15.1) MUTATED       18     28     20
  DEL PEAK 27(10P15.1) WILD-TYPE     29     28     31
D57V2, multiclass
        clus
vv       DEL PEAK 27(10P15.1) MUTATED DEL PEAK 27(10P15.1) WILD-TYPE
  CLUS_1                           18                             29
  CLUS_2                           28                             28
  CLUS_3                           20                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(10P15.1) MUTATED       17     29     16     27     99     23
  DEL PEAK 27(10P15.1) WILD-TYPE     26     86     13     60     70     35
D57V3, multiclass
        clus
vv       DEL PEAK 27(10P15.1) MUTATED DEL PEAK 27(10P15.1) WILD-TYPE
  CLUS_1                           17                             26
  CLUS_2                           29                             86
  CLUS_3                           16                             13
  CLUS_4                           27                             60
  CLUS_5                           99                             70
  CLUS_6                           23                             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(10P15.1) MUTATED       31     57     34     35
  DEL PEAK 27(10P15.1) WILD-TYPE     59     38     23     90
D57V4, multiclass
        clus
vv       DEL PEAK 27(10P15.1) MUTATED DEL PEAK 27(10P15.1) WILD-TYPE
  CLUS_1                           31                             59
  CLUS_2                           57                             38
  CLUS_3                           34                             23
  CLUS_4                           35                             90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(10P15.1) MUTATED       43     35     42     13
  DEL PEAK 27(10P15.1) WILD-TYPE     62     74     44     13
D57V5, multiclass
        clus
vv       DEL PEAK 27(10P15.1) MUTATED DEL PEAK 27(10P15.1) WILD-TYPE
  CLUS_1                           43                             62
  CLUS_2                           35                             74
  CLUS_3                           42                             44
  CLUS_4                           13                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(10P15.1) MUTATED       32     27     22     31      9     12
  DEL PEAK 27(10P15.1) WILD-TYPE     47     40     40     29     21     16
D57V6, multiclass
        clus
vv       DEL PEAK 27(10P15.1) MUTATED DEL PEAK 27(10P15.1) WILD-TYPE
  CLUS_1                           32                             47
  CLUS_2                           27                             40
  CLUS_3                           22                             40
  CLUS_4                           31                             29
  CLUS_5                            9                             21
  CLUS_6                           12                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(10P15.1) MUTATED       34     92     63     21
  DEL PEAK 27(10P15.1) WILD-TYPE     72     58     96     62
D57V7, multiclass
        clus
vv       DEL PEAK 27(10P15.1) MUTATED DEL PEAK 27(10P15.1) WILD-TYPE
  CLUS_1                           34                             72
  CLUS_2                           92                             58
  CLUS_3                           63                             96
  CLUS_4                           21                             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(10P15.1) MUTATED       62    103     45
  DEL PEAK 27(10P15.1) WILD-TYPE    116     86     86
D57V8, multiclass
        clus
vv       DEL PEAK 27(10P15.1) MUTATED DEL PEAK 27(10P15.1) WILD-TYPE
  CLUS_1                           62                            116
  CLUS_2                          103                             86
  CLUS_3                           45                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(10P15.1) MUTATED       85     36     31     52
  DEL PEAK 27(10P15.1) WILD-TYPE     99     51     93     28
D57V9, multiclass
        clus
vv       DEL PEAK 27(10P15.1) MUTATED DEL PEAK 27(10P15.1) WILD-TYPE
  CLUS_1                           85                             99
  CLUS_2                           36                             51
  CLUS_3                           31                             93
  CLUS_4                           52                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(10P15.1) MUTATED       62     39     89     14
  DEL PEAK 27(10P15.1) WILD-TYPE     27     79    110     55
D57V10, multiclass
        clus
vv       DEL PEAK 27(10P15.1) MUTATED DEL PEAK 27(10P15.1) WILD-TYPE
  CLUS_1                           62                             27
  CLUS_2                           39                             79
  CLUS_3                           89                            110
  CLUS_4                           14                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(10P15.1) MUTATED       23     56     13     45
  DEL PEAK 27(10P15.1) WILD-TYPE     38     59     53     47
D57V11, multiclass
        clus
vv       DEL PEAK 27(10P15.1) MUTATED DEL PEAK 27(10P15.1) WILD-TYPE
  CLUS_1                           23                             38
  CLUS_2                           56                             59
  CLUS_3                           13                             53
  CLUS_4                           45                             47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(10P15.1) MUTATED       15     86     36
  DEL PEAK 27(10P15.1) WILD-TYPE     22    102     73
D57V12, multiclass
        clus
vv       DEL PEAK 27(10P15.1) MUTATED DEL PEAK 27(10P15.1) WILD-TYPE
  CLUS_1                           15                             22
  CLUS_2                           86                            102
  CLUS_3                           36                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 28(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(10Q23.31) MUTATED       17     36     15     13
  DEL PEAK 28(10Q23.31) WILD-TYPE     24     14     19     16
D58V1, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            17                              24
  CLUS_2                            36                              14
  CLUS_3                            15                              19
  CLUS_4                            13                              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(10Q23.31) MUTATED       17     40     24
  DEL PEAK 28(10Q23.31) WILD-TYPE     30     16     27
D58V2, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            17                              30
  CLUS_2                            40                              16
  CLUS_3                            24                              27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(10Q23.31) MUTATED       26     39     13     41    127     22
  DEL PEAK 28(10Q23.31) WILD-TYPE     17     76     16     46     42     36
D58V3, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            26                              17
  CLUS_2                            39                              76
  CLUS_3                            13                              16
  CLUS_4                            41                              46
  CLUS_5                           127                              42
  CLUS_6                            22                              36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(10Q23.31) MUTATED       43     69     38     48
  DEL PEAK 28(10Q23.31) WILD-TYPE     47     26     19     77
D58V4, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            43                              47
  CLUS_2                            69                              26
  CLUS_3                            38                              19
  CLUS_4                            48                              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(10Q23.31) MUTATED       49     53     53     16
  DEL PEAK 28(10Q23.31) WILD-TYPE     56     56     33     10
D58V5, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            49                              56
  CLUS_2                            53                              56
  CLUS_3                            53                              33
  CLUS_4                            16                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(10Q23.31) MUTATED       39     34     36     40     10     12
  DEL PEAK 28(10Q23.31) WILD-TYPE     40     33     26     20     20     16
D58V6, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            39                              40
  CLUS_2                            34                              33
  CLUS_3                            36                              26
  CLUS_4                            40                              20
  CLUS_5                            10                              20
  CLUS_6                            12                              16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(10Q23.31) MUTATED       46    114     72     35
  DEL PEAK 28(10Q23.31) WILD-TYPE     60     36     87     48
D58V7, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            46                              60
  CLUS_2                           114                              36
  CLUS_3                            72                              87
  CLUS_4                            35                              48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(10Q23.31) MUTATED       78    135     54
  DEL PEAK 28(10Q23.31) WILD-TYPE    100     54     77
D58V8, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            78                             100
  CLUS_2                           135                              54
  CLUS_3                            54                              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(10Q23.31) MUTATED      100     49     49     56
  DEL PEAK 28(10Q23.31) WILD-TYPE     84     38     75     24
D58V9, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                           100                              84
  CLUS_2                            49                              38
  CLUS_3                            49                              75
  CLUS_4                            56                              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(10Q23.31) MUTATED       64     51    112     27
  DEL PEAK 28(10Q23.31) WILD-TYPE     25     67     87     42
D58V10, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            64                              25
  CLUS_2                            51                              67
  CLUS_3                           112                              87
  CLUS_4                            27                              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(10Q23.31) MUTATED       28     73     20     58
  DEL PEAK 28(10Q23.31) WILD-TYPE     33     42     46     34
D58V11, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            28                              33
  CLUS_2                            73                              42
  CLUS_3                            20                              46
  CLUS_4                            58                              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(10Q23.31) MUTATED       20    113     46
  DEL PEAK 28(10Q23.31) WILD-TYPE     17     75     63
D58V12, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            20                              17
  CLUS_2                           113                              75
  CLUS_3                            46                              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 29(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(11P15.5) MUTATED       29     19     12     18
  DEL PEAK 29(11P15.5) WILD-TYPE     12     31     22     11
D59V1, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           29                             12
  CLUS_2                           19                             31
  CLUS_3                           12                             22
  CLUS_4                           18                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(11P15.5) MUTATED       32     22     24
  DEL PEAK 29(11P15.5) WILD-TYPE     15     34     27
D59V2, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           32                             15
  CLUS_2                           22                             34
  CLUS_3                           24                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(11P15.5) MUTATED       31     30     13     53     79     39
  DEL PEAK 29(11P15.5) WILD-TYPE     12     85     16     34     90     19
D59V3, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           31                             12
  CLUS_2                           30                             85
  CLUS_3                           13                             16
  CLUS_4                           53                             34
  CLUS_5                           79                             90
  CLUS_6                           39                             19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(11P15.5) MUTATED       60     43     27     46
  DEL PEAK 29(11P15.5) WILD-TYPE     30     52     30     79
D59V4, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           60                             30
  CLUS_2                           43                             52
  CLUS_3                           27                             30
  CLUS_4                           46                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(11P15.5) MUTATED       41     62     46     12
  DEL PEAK 29(11P15.5) WILD-TYPE     64     47     40     14
D59V5, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           41                             64
  CLUS_2                           62                             47
  CLUS_3                           46                             40
  CLUS_4                           12                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(11P15.5) MUTATED       35     28     41     34     15      8
  DEL PEAK 29(11P15.5) WILD-TYPE     44     39     21     26     15     20
D59V6, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           35                             44
  CLUS_2                           28                             39
  CLUS_3                           41                             21
  CLUS_4                           34                             26
  CLUS_5                           15                             15
  CLUS_6                            8                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(11P15.5) MUTATED       59     66     89     30
  DEL PEAK 29(11P15.5) WILD-TYPE     47     84     70     53
D59V7, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           59                             47
  CLUS_2                           66                             84
  CLUS_3                           89                             70
  CLUS_4                           30                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(11P15.5) MUTATED       98     82     64
  DEL PEAK 29(11P15.5) WILD-TYPE     80    107     67
D59V8, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           98                             80
  CLUS_2                           82                            107
  CLUS_3                           64                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(11P15.5) MUTATED      110     45     53     28
  DEL PEAK 29(11P15.5) WILD-TYPE     74     42     71     52
D59V9, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                          110                             74
  CLUS_2                           45                             42
  CLUS_3                           53                             71
  CLUS_4                           28                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(11P15.5) MUTATED       39     61    109     27
  DEL PEAK 29(11P15.5) WILD-TYPE     50     57     90     42
D59V10, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           39                             50
  CLUS_2                           61                             57
  CLUS_3                          109                             90
  CLUS_4                           27                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(11P15.5) MUTATED       35     62     19     48
  DEL PEAK 29(11P15.5) WILD-TYPE     26     53     47     44
D59V11, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           35                             26
  CLUS_2                           62                             53
  CLUS_3                           19                             47
  CLUS_4                           48                             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(11P15.5) MUTATED       22     95     47
  DEL PEAK 29(11P15.5) WILD-TYPE     15     93     62
D59V12, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           22                             15
  CLUS_2                           95                             93
  CLUS_3                           47                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 30(11Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(11Q22.1) MUTATED       10     18      9      6
  DEL PEAK 30(11Q22.1) WILD-TYPE     31     32     25     23
D60V1, multiclass
        clus
vv       DEL PEAK 30(11Q22.1) MUTATED DEL PEAK 30(11Q22.1) WILD-TYPE
  CLUS_1                           10                             31
  CLUS_2                           18                             32
  CLUS_3                            9                             25
  CLUS_4                            6                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(11Q22.1) MUTATED       13     20     10
  DEL PEAK 30(11Q22.1) WILD-TYPE     34     36     41
D60V2, multiclass
        clus
vv       DEL PEAK 30(11Q22.1) MUTATED DEL PEAK 30(11Q22.1) WILD-TYPE
  CLUS_1                           13                             34
  CLUS_2                           20                             36
  CLUS_3                           10                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(11Q22.1) MUTATED       10     27     11     19     68     28
  DEL PEAK 30(11Q22.1) WILD-TYPE     33     88     18     68    101     30
D60V3, multiclass
        clus
vv       DEL PEAK 30(11Q22.1) MUTATED DEL PEAK 30(11Q22.1) WILD-TYPE
  CLUS_1                           10                             33
  CLUS_2                           27                             88
  CLUS_3                           11                             18
  CLUS_4                           19                             68
  CLUS_5                           68                            101
  CLUS_6                           28                             30
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(11Q22.1) MUTATED       36     39     25     27
  DEL PEAK 30(11Q22.1) WILD-TYPE     54     56     32     98
D60V4, multiclass
        clus
vv       DEL PEAK 30(11Q22.1) MUTATED DEL PEAK 30(11Q22.1) WILD-TYPE
  CLUS_1                           36                             54
  CLUS_2                           39                             56
  CLUS_3                           25                             32
  CLUS_4                           27                             98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(11Q22.1) MUTATED       26     36     31      6
  DEL PEAK 30(11Q22.1) WILD-TYPE     79     73     55     20
D60V5, multiclass
        clus
vv       DEL PEAK 30(11Q22.1) MUTATED DEL PEAK 30(11Q22.1) WILD-TYPE
  CLUS_1                           26                             79
  CLUS_2                           36                             73
  CLUS_3                           31                             55
  CLUS_4                            6                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(11Q22.1) MUTATED       30     15     18     21      6      9
  DEL PEAK 30(11Q22.1) WILD-TYPE     49     52     44     39     24     19
D60V6, multiclass
        clus
vv       DEL PEAK 30(11Q22.1) MUTATED DEL PEAK 30(11Q22.1) WILD-TYPE
  CLUS_1                           30                             49
  CLUS_2                           15                             52
  CLUS_3                           18                             44
  CLUS_4                           21                             39
  CLUS_5                            6                             24
  CLUS_6                            9                             19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(11Q22.1) MUTATED       31     61     52     18
  DEL PEAK 30(11Q22.1) WILD-TYPE     75     89    107     65
D60V7, multiclass
        clus
vv       DEL PEAK 30(11Q22.1) MUTATED DEL PEAK 30(11Q22.1) WILD-TYPE
  CLUS_1                           31                             75
  CLUS_2                           61                             89
  CLUS_3                           52                            107
  CLUS_4                           18                             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(11Q22.1) MUTATED       49     75     38
  DEL PEAK 30(11Q22.1) WILD-TYPE    129    114     93
D60V8, multiclass
        clus
vv       DEL PEAK 30(11Q22.1) MUTATED DEL PEAK 30(11Q22.1) WILD-TYPE
  CLUS_1                           49                            129
  CLUS_2                           75                            114
  CLUS_3                           38                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(11Q22.1) MUTATED       61     33     32     31
  DEL PEAK 30(11Q22.1) WILD-TYPE    123     54     92     49
D60V9, multiclass
        clus
vv       DEL PEAK 30(11Q22.1) MUTATED DEL PEAK 30(11Q22.1) WILD-TYPE
  CLUS_1                           61                            123
  CLUS_2                           33                             54
  CLUS_3                           32                             92
  CLUS_4                           31                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(11Q22.1) MUTATED       39     40     64     14
  DEL PEAK 30(11Q22.1) WILD-TYPE     50     78    135     55
D60V10, multiclass
        clus
vv       DEL PEAK 30(11Q22.1) MUTATED DEL PEAK 30(11Q22.1) WILD-TYPE
  CLUS_1                           39                             50
  CLUS_2                           40                             78
  CLUS_3                           64                            135
  CLUS_4                           14                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(11Q22.1) MUTATED       16     43     18     37
  DEL PEAK 30(11Q22.1) WILD-TYPE     45     72     48     55
D60V11, multiclass
        clus
vv       DEL PEAK 30(11Q22.1) MUTATED DEL PEAK 30(11Q22.1) WILD-TYPE
  CLUS_1                           16                             45
  CLUS_2                           43                             72
  CLUS_3                           18                             48
  CLUS_4                           37                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(11Q22.1) MUTATED       12     73     29
  DEL PEAK 30(11Q22.1) WILD-TYPE     25    115     80
D60V12, multiclass
        clus
vv       DEL PEAK 30(11Q22.1) MUTATED DEL PEAK 30(11Q22.1) WILD-TYPE
  CLUS_1                           12                             25
  CLUS_2                           73                            115
  CLUS_3                           29                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 31(11Q25) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(11Q25) MUTATED       14     19     12      9
  DEL PEAK 31(11Q25) WILD-TYPE     27     31     22     20
D61V1, multiclass
        clus
vv       DEL PEAK 31(11Q25) MUTATED DEL PEAK 31(11Q25) WILD-TYPE
  CLUS_1                         14                           27
  CLUS_2                         19                           31
  CLUS_3                         12                           22
  CLUS_4                          9                           20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(11Q25) MUTATED       16     22     16
  DEL PEAK 31(11Q25) WILD-TYPE     31     34     35
D61V2, multiclass
        clus
vv       DEL PEAK 31(11Q25) MUTATED DEL PEAK 31(11Q25) WILD-TYPE
  CLUS_1                         16                           31
  CLUS_2                         22                           34
  CLUS_3                         16                           35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(11Q25) MUTATED        8     33     13     23     80     27
  DEL PEAK 31(11Q25) WILD-TYPE     35     82     16     64     89     31
D61V3, multiclass
        clus
vv       DEL PEAK 31(11Q25) MUTATED DEL PEAK 31(11Q25) WILD-TYPE
  CLUS_1                          8                           35
  CLUS_2                         33                           82
  CLUS_3                         13                           16
  CLUS_4                         23                           64
  CLUS_5                         80                           89
  CLUS_6                         27                           31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(11Q25) MUTATED       32     39     30     36
  DEL PEAK 31(11Q25) WILD-TYPE     58     56     27     89
D61V4, multiclass
        clus
vv       DEL PEAK 31(11Q25) MUTATED DEL PEAK 31(11Q25) WILD-TYPE
  CLUS_1                         32                           58
  CLUS_2                         39                           56
  CLUS_3                         30                           27
  CLUS_4                         36                           89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(11Q25) MUTATED       29     41     33      5
  DEL PEAK 31(11Q25) WILD-TYPE     76     68     53     21
D61V5, multiclass
        clus
vv       DEL PEAK 31(11Q25) MUTATED DEL PEAK 31(11Q25) WILD-TYPE
  CLUS_1                         29                           76
  CLUS_2                         41                           68
  CLUS_3                         33                           53
  CLUS_4                          5                           21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(11Q25) MUTATED       35     18     20     20      7      8
  DEL PEAK 31(11Q25) WILD-TYPE     44     49     42     40     23     20
D61V6, multiclass
        clus
vv       DEL PEAK 31(11Q25) MUTATED DEL PEAK 31(11Q25) WILD-TYPE
  CLUS_1                         35                           44
  CLUS_2                         18                           49
  CLUS_3                         20                           42
  CLUS_4                         20                           40
  CLUS_5                          7                           23
  CLUS_6                          8                           20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(11Q25) MUTATED       33     65     63     22
  DEL PEAK 31(11Q25) WILD-TYPE     73     85     96     61
D61V7, multiclass
        clus
vv       DEL PEAK 31(11Q25) MUTATED DEL PEAK 31(11Q25) WILD-TYPE
  CLUS_1                         33                           73
  CLUS_2                         65                           85
  CLUS_3                         63                           96
  CLUS_4                         22                           61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(11Q25) MUTATED       56     78     49
  DEL PEAK 31(11Q25) WILD-TYPE    122    111     82
D61V8, multiclass
        clus
vv       DEL PEAK 31(11Q25) MUTATED DEL PEAK 31(11Q25) WILD-TYPE
  CLUS_1                         56                          122
  CLUS_2                         78                          111
  CLUS_3                         49                           82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(11Q25) MUTATED       69     35     34     34
  DEL PEAK 31(11Q25) WILD-TYPE    115     52     90     46
D61V9, multiclass
        clus
vv       DEL PEAK 31(11Q25) MUTATED DEL PEAK 31(11Q25) WILD-TYPE
  CLUS_1                         69                          115
  CLUS_2                         35                           52
  CLUS_3                         34                           90
  CLUS_4                         34                           46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(11Q25) MUTATED       39     42     73     18
  DEL PEAK 31(11Q25) WILD-TYPE     50     76    126     51
D61V10, multiclass
        clus
vv       DEL PEAK 31(11Q25) MUTATED DEL PEAK 31(11Q25) WILD-TYPE
  CLUS_1                         39                           50
  CLUS_2                         42                           76
  CLUS_3                         73                          126
  CLUS_4                         18                           51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(11Q25) MUTATED       21     46     18     39
  DEL PEAK 31(11Q25) WILD-TYPE     40     69     48     53
D61V11, multiclass
        clus
vv       DEL PEAK 31(11Q25) MUTATED DEL PEAK 31(11Q25) WILD-TYPE
  CLUS_1                         21                           40
  CLUS_2                         46                           69
  CLUS_3                         18                           48
  CLUS_4                         39                           53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(11Q25) MUTATED       13     78     33
  DEL PEAK 31(11Q25) WILD-TYPE     24    110     76
D61V12, multiclass
        clus
vv       DEL PEAK 31(11Q25) MUTATED DEL PEAK 31(11Q25) WILD-TYPE
  CLUS_1                         13                           24
  CLUS_2                         78                          110
  CLUS_3                         33                           76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 32(12Q24.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(12Q24.31) MUTATED        4      9      4      5
  DEL PEAK 32(12Q24.31) WILD-TYPE     37     41     30     24
D62V1, multiclass
        clus
vv       DEL PEAK 32(12Q24.31) MUTATED DEL PEAK 32(12Q24.31) WILD-TYPE
  CLUS_1                             4                              37
  CLUS_2                             9                              41
  CLUS_3                             4                              30
  CLUS_4                             5                              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(12Q24.31) MUTATED        5     10      7
  DEL PEAK 32(12Q24.31) WILD-TYPE     42     46     44
D62V2, multiclass
        clus
vv       DEL PEAK 32(12Q24.31) MUTATED DEL PEAK 32(12Q24.31) WILD-TYPE
  CLUS_1                             5                              42
  CLUS_2                            10                              46
  CLUS_3                             7                              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(12Q24.31) MUTATED        5     17      6     12     35     11
  DEL PEAK 32(12Q24.31) WILD-TYPE     38     98     23     75    134     47
D62V3, multiclass
        clus
vv       DEL PEAK 32(12Q24.31) MUTATED DEL PEAK 32(12Q24.31) WILD-TYPE
  CLUS_1                             5                              38
  CLUS_2                            17                              98
  CLUS_3                             6                              23
  CLUS_4                            12                              75
  CLUS_5                            35                             134
  CLUS_6                            11                              47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(12Q24.31) MUTATED       18     14     12     21
  DEL PEAK 32(12Q24.31) WILD-TYPE     72     81     45    104
D62V4, multiclass
        clus
vv       DEL PEAK 32(12Q24.31) MUTATED DEL PEAK 32(12Q24.31) WILD-TYPE
  CLUS_1                            18                              72
  CLUS_2                            14                              81
  CLUS_3                            12                              45
  CLUS_4                            21                             104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(12Q24.31) MUTATED       17     15     14      5
  DEL PEAK 32(12Q24.31) WILD-TYPE     88     94     72     21
D62V5, multiclass
        clus
vv       DEL PEAK 32(12Q24.31) MUTATED DEL PEAK 32(12Q24.31) WILD-TYPE
  CLUS_1                            17                              88
  CLUS_2                            15                              94
  CLUS_3                            14                              72
  CLUS_4                             5                              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(12Q24.31) MUTATED        7     16     10     12      3      3
  DEL PEAK 32(12Q24.31) WILD-TYPE     72     51     52     48     27     25
D62V6, multiclass
        clus
vv       DEL PEAK 32(12Q24.31) MUTATED DEL PEAK 32(12Q24.31) WILD-TYPE
  CLUS_1                             7                              72
  CLUS_2                            16                              51
  CLUS_3                            10                              52
  CLUS_4                            12                              48
  CLUS_5                             3                              27
  CLUS_6                             3                              25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(12Q24.31) MUTATED       20     29     25     12
  DEL PEAK 32(12Q24.31) WILD-TYPE     86    121    134     71
D62V7, multiclass
        clus
vv       DEL PEAK 32(12Q24.31) MUTATED DEL PEAK 32(12Q24.31) WILD-TYPE
  CLUS_1                            20                              86
  CLUS_2                            29                             121
  CLUS_3                            25                             134
  CLUS_4                            12                              71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(12Q24.31) MUTATED       34     32     20
  DEL PEAK 32(12Q24.31) WILD-TYPE    144    157    111
D62V8, multiclass
        clus
vv       DEL PEAK 32(12Q24.31) MUTATED DEL PEAK 32(12Q24.31) WILD-TYPE
  CLUS_1                            34                             144
  CLUS_2                            32                             157
  CLUS_3                            20                             111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(12Q24.31) MUTATED       23     20     20     18
  DEL PEAK 32(12Q24.31) WILD-TYPE    161     67    104     62
D62V9, multiclass
        clus
vv       DEL PEAK 32(12Q24.31) MUTATED DEL PEAK 32(12Q24.31) WILD-TYPE
  CLUS_1                            23                             161
  CLUS_2                            20                              67
  CLUS_3                            20                             104
  CLUS_4                            18                              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(12Q24.31) MUTATED       15     14     39     13
  DEL PEAK 32(12Q24.31) WILD-TYPE     74    104    160     56
D62V10, multiclass
        clus
vv       DEL PEAK 32(12Q24.31) MUTATED DEL PEAK 32(12Q24.31) WILD-TYPE
  CLUS_1                            15                              74
  CLUS_2                            14                             104
  CLUS_3                            39                             160
  CLUS_4                            13                              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(12Q24.31) MUTATED       14     23      7     20
  DEL PEAK 32(12Q24.31) WILD-TYPE     47     92     59     72
D62V11, multiclass
        clus
vv       DEL PEAK 32(12Q24.31) MUTATED DEL PEAK 32(12Q24.31) WILD-TYPE
  CLUS_1                            14                              47
  CLUS_2                            23                              92
  CLUS_3                             7                              59
  CLUS_4                            20                              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(12Q24.31) MUTATED       11     38     15
  DEL PEAK 32(12Q24.31) WILD-TYPE     26    150     94
D62V12, multiclass
        clus
vv       DEL PEAK 32(12Q24.31) MUTATED DEL PEAK 32(12Q24.31) WILD-TYPE
  CLUS_1                            11                              26
  CLUS_2                            38                             150
  CLUS_3                            15                              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 33(13Q12.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(13Q12.11) MUTATED       25     34     26     15
  DEL PEAK 33(13Q12.11) WILD-TYPE     16     16      8     14
D63V1, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            25                              16
  CLUS_2                            34                              16
  CLUS_3                            26                               8
  CLUS_4                            15                              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(13Q12.11) MUTATED       28     39     33
  DEL PEAK 33(13Q12.11) WILD-TYPE     19     17     18
D63V2, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            28                              19
  CLUS_2                            39                              17
  CLUS_3                            33                              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(13Q12.11) MUTATED       34     57     14     71    111     44
  DEL PEAK 33(13Q12.11) WILD-TYPE      9     58     15     16     58     14
D63V3, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            34                               9
  CLUS_2                            57                              58
  CLUS_3                            14                              15
  CLUS_4                            71                              16
  CLUS_5                           111                              58
  CLUS_6                            44                              14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(13Q12.11) MUTATED       64     69     37     70
  DEL PEAK 33(13Q12.11) WILD-TYPE     26     26     20     55
D63V4, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            64                              26
  CLUS_2                            69                              26
  CLUS_3                            37                              20
  CLUS_4                            70                              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(13Q12.11) MUTATED       67     74     58     20
  DEL PEAK 33(13Q12.11) WILD-TYPE     38     35     28      6
D63V5, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            67                              38
  CLUS_2                            74                              35
  CLUS_3                            58                              28
  CLUS_4                            20                               6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(13Q12.11) MUTATED       49     42     48     42     18     20
  DEL PEAK 33(13Q12.11) WILD-TYPE     30     25     14     18     12      8
D63V6, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            49                              30
  CLUS_2                            42                              25
  CLUS_3                            48                              14
  CLUS_4                            42                              18
  CLUS_5                            18                              12
  CLUS_6                            20                               8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(13Q12.11) MUTATED       69    102    102     56
  DEL PEAK 33(13Q12.11) WILD-TYPE     37     48     57     27
D63V7, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            69                              37
  CLUS_2                           102                              48
  CLUS_3                           102                              57
  CLUS_4                            56                              27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(13Q12.11) MUTATED      119    124     86
  DEL PEAK 33(13Q12.11) WILD-TYPE     59     65     45
D63V8, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                           119                              59
  CLUS_2                           124                              65
  CLUS_3                            86                              45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(13Q12.11) MUTATED      127     60     75     52
  DEL PEAK 33(13Q12.11) WILD-TYPE     57     27     49     28
D63V9, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                           127                              57
  CLUS_2                            60                              27
  CLUS_3                            75                              49
  CLUS_4                            52                              28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(13Q12.11) MUTATED       61     76    137     40
  DEL PEAK 33(13Q12.11) WILD-TYPE     28     42     62     29
D63V10, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            61                              28
  CLUS_2                            76                              42
  CLUS_3                           137                              62
  CLUS_4                            40                              29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(13Q12.11) MUTATED       38     82     37     66
  DEL PEAK 33(13Q12.11) WILD-TYPE     23     33     29     26
D63V11, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            38                              23
  CLUS_2                            82                              33
  CLUS_3                            37                              29
  CLUS_4                            66                              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(13Q12.11) MUTATED       21    138     64
  DEL PEAK 33(13Q12.11) WILD-TYPE     16     50     45
D63V12, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            21                              16
  CLUS_2                           138                              50
  CLUS_3                            64                              45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = DEL PEAK 34(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(13Q14.2) MUTATED       29     29     28     19
  DEL PEAK 34(13Q14.2) WILD-TYPE     12     21      6     10
D64V1, multiclass
        clus
vv       DEL PEAK 34(13Q14.2) MUTATED DEL PEAK 34(13Q14.2) WILD-TYPE
  CLUS_1                           29                             12
  CLUS_2                           29                             21
  CLUS_3                           28                              6
  CLUS_4                           19                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(13Q14.2) MUTATED       32     33     40
  DEL PEAK 34(13Q14.2) WILD-TYPE     15     23     11
D64V2, multiclass
        clus
vv       DEL PEAK 34(13Q14.2) MUTATED DEL PEAK 34(13Q14.2) WILD-TYPE
  CLUS_1                           32                             15
  CLUS_2                           33                             23
  CLUS_3                           40                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(13Q14.2) MUTATED       34     62     13     73    118     44
  DEL PEAK 34(13Q14.2) WILD-TYPE      9     53     16     14     51     14
D64V3, multiclass
        clus
vv       DEL PEAK 34(13Q14.2) MUTATED DEL PEAK 34(13Q14.2) WILD-TYPE
  CLUS_1                           34                              9
  CLUS_2                           62                             53
  CLUS_3                           13                             16
  CLUS_4                           73                             14
  CLUS_5                          118                             51
  CLUS_6                           44                             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(13Q14.2) MUTATED       65     72     39     72
  DEL PEAK 34(13Q14.2) WILD-TYPE     25     23     18     53
D64V4, multiclass
        clus
vv       DEL PEAK 34(13Q14.2) MUTATED DEL PEAK 34(13Q14.2) WILD-TYPE
  CLUS_1                           65                             25
  CLUS_2                           72                             23
  CLUS_3                           39                             18
  CLUS_4                           72                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(13Q14.2) MUTATED       73     73     60     21
  DEL PEAK 34(13Q14.2) WILD-TYPE     32     36     26      5
D64V5, multiclass
        clus
vv       DEL PEAK 34(13Q14.2) MUTATED DEL PEAK 34(13Q14.2) WILD-TYPE
  CLUS_1                           73                             32
  CLUS_2                           73                             36
  CLUS_3                           60                             26
  CLUS_4                           21                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(13Q14.2) MUTATED       55     41     47     46     17     21
  DEL PEAK 34(13Q14.2) WILD-TYPE     24     26     15     14     13      7
D64V6, multiclass
        clus
vv       DEL PEAK 34(13Q14.2) MUTATED DEL PEAK 34(13Q14.2) WILD-TYPE
  CLUS_1                           55                             24
  CLUS_2                           41                             26
  CLUS_3                           47                             15
  CLUS_4                           46                             14
  CLUS_5                           17                             13
  CLUS_6                           21                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(13Q14.2) MUTATED       67    101    113     60
  DEL PEAK 34(13Q14.2) WILD-TYPE     39     49     46     23
D64V7, multiclass
        clus
vv       DEL PEAK 34(13Q14.2) MUTATED DEL PEAK 34(13Q14.2) WILD-TYPE
  CLUS_1                           67                             39
  CLUS_2                          101                             49
  CLUS_3                          113                             46
  CLUS_4                           60                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(13Q14.2) MUTATED      122    125     94
  DEL PEAK 34(13Q14.2) WILD-TYPE     56     64     37
D64V8, multiclass
        clus
vv       DEL PEAK 34(13Q14.2) MUTATED DEL PEAK 34(13Q14.2) WILD-TYPE
  CLUS_1                          122                             56
  CLUS_2                          125                             64
  CLUS_3                           94                             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(13Q14.2) MUTATED      132     64     75     54
  DEL PEAK 34(13Q14.2) WILD-TYPE     52     23     49     26
D64V9, multiclass
        clus
vv       DEL PEAK 34(13Q14.2) MUTATED DEL PEAK 34(13Q14.2) WILD-TYPE
  CLUS_1                          132                             52
  CLUS_2                           64                             23
  CLUS_3                           75                             49
  CLUS_4                           54                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(13Q14.2) MUTATED       63     78    144     40
  DEL PEAK 34(13Q14.2) WILD-TYPE     26     40     55     29
D64V10, multiclass
        clus
vv       DEL PEAK 34(13Q14.2) MUTATED DEL PEAK 34(13Q14.2) WILD-TYPE
  CLUS_1                           63                             26
  CLUS_2                           78                             40
  CLUS_3                          144                             55
  CLUS_4                           40                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(13Q14.2) MUTATED       42     87     35     67
  DEL PEAK 34(13Q14.2) WILD-TYPE     19     28     31     25
D64V11, multiclass
        clus
vv       DEL PEAK 34(13Q14.2) MUTATED DEL PEAK 34(13Q14.2) WILD-TYPE
  CLUS_1                           42                             19
  CLUS_2                           87                             28
  CLUS_3                           35                             31
  CLUS_4                           67                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(13Q14.2) MUTATED       22    139     70
  DEL PEAK 34(13Q14.2) WILD-TYPE     15     49     39
D64V12, multiclass
        clus
vv       DEL PEAK 34(13Q14.2) MUTATED DEL PEAK 34(13Q14.2) WILD-TYPE
  CLUS_1                           22                             15
  CLUS_2                          139                             49
  CLUS_3                           70                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = DEL PEAK 35(14Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(14Q11.2) MUTATED        5     21     14     12
  DEL PEAK 35(14Q11.2) WILD-TYPE     36     29     20     17
D65V1, multiclass
        clus
vv       DEL PEAK 35(14Q11.2) MUTATED DEL PEAK 35(14Q11.2) WILD-TYPE
  CLUS_1                            5                             36
  CLUS_2                           21                             29
  CLUS_3                           14                             20
  CLUS_4                           12                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q11.2) MUTATED        9     22     21
  DEL PEAK 35(14Q11.2) WILD-TYPE     38     34     30
D65V2, multiclass
        clus
vv       DEL PEAK 35(14Q11.2) MUTATED DEL PEAK 35(14Q11.2) WILD-TYPE
  CLUS_1                            9                             38
  CLUS_2                           22                             34
  CLUS_3                           21                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(14Q11.2) MUTATED        5     29      8     37     67     29
  DEL PEAK 35(14Q11.2) WILD-TYPE     38     86     21     50    102     29
D65V3, multiclass
        clus
vv       DEL PEAK 35(14Q11.2) MUTATED DEL PEAK 35(14Q11.2) WILD-TYPE
  CLUS_1                            5                             38
  CLUS_2                           29                             86
  CLUS_3                            8                             21
  CLUS_4                           37                             50
  CLUS_5                           67                            102
  CLUS_6                           29                             29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(14Q11.2) MUTATED       29     33     29     39
  DEL PEAK 35(14Q11.2) WILD-TYPE     61     62     28     86
D65V4, multiclass
        clus
vv       DEL PEAK 35(14Q11.2) MUTATED DEL PEAK 35(14Q11.2) WILD-TYPE
  CLUS_1                           29                             61
  CLUS_2                           33                             62
  CLUS_3                           29                             28
  CLUS_4                           39                             86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(14Q11.2) MUTATED       40     31     39      9
  DEL PEAK 35(14Q11.2) WILD-TYPE     65     78     47     17
D65V5, multiclass
        clus
vv       DEL PEAK 35(14Q11.2) MUTATED DEL PEAK 35(14Q11.2) WILD-TYPE
  CLUS_1                           40                             65
  CLUS_2                           31                             78
  CLUS_3                           39                             47
  CLUS_4                            9                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(14Q11.2) MUTATED       38     22     18     17     12     12
  DEL PEAK 35(14Q11.2) WILD-TYPE     41     45     44     43     18     16
D65V6, multiclass
        clus
vv       DEL PEAK 35(14Q11.2) MUTATED DEL PEAK 35(14Q11.2) WILD-TYPE
  CLUS_1                           38                             41
  CLUS_2                           22                             45
  CLUS_3                           18                             44
  CLUS_4                           17                             43
  CLUS_5                           12                             18
  CLUS_6                           12                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(14Q11.2) MUTATED       22     56     73     22
  DEL PEAK 35(14Q11.2) WILD-TYPE     84     94     86     61
D65V7, multiclass
        clus
vv       DEL PEAK 35(14Q11.2) MUTATED DEL PEAK 35(14Q11.2) WILD-TYPE
  CLUS_1                           22                             84
  CLUS_2                           56                             94
  CLUS_3                           73                             86
  CLUS_4                           22                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q11.2) MUTATED       43     69     61
  DEL PEAK 35(14Q11.2) WILD-TYPE    135    120     70
D65V8, multiclass
        clus
vv       DEL PEAK 35(14Q11.2) MUTATED DEL PEAK 35(14Q11.2) WILD-TYPE
  CLUS_1                           43                            135
  CLUS_2                           69                            120
  CLUS_3                           61                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(14Q11.2) MUTATED       63     28     37     38
  DEL PEAK 35(14Q11.2) WILD-TYPE    121     59     87     42
D65V9, multiclass
        clus
vv       DEL PEAK 35(14Q11.2) MUTATED DEL PEAK 35(14Q11.2) WILD-TYPE
  CLUS_1                           63                            121
  CLUS_2                           28                             59
  CLUS_3                           37                             87
  CLUS_4                           38                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(14Q11.2) MUTATED       42     42     67     15
  DEL PEAK 35(14Q11.2) WILD-TYPE     47     76    132     54
D65V10, multiclass
        clus
vv       DEL PEAK 35(14Q11.2) MUTATED DEL PEAK 35(14Q11.2) WILD-TYPE
  CLUS_1                           42                             47
  CLUS_2                           42                             76
  CLUS_3                           67                            132
  CLUS_4                           15                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(14Q11.2) MUTATED       11     52     22     35
  DEL PEAK 35(14Q11.2) WILD-TYPE     50     63     44     57
D65V11, multiclass
        clus
vv       DEL PEAK 35(14Q11.2) MUTATED DEL PEAK 35(14Q11.2) WILD-TYPE
  CLUS_1                           11                             50
  CLUS_2                           52                             63
  CLUS_3                           22                             44
  CLUS_4                           35                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q11.2) MUTATED        6     81     33
  DEL PEAK 35(14Q11.2) WILD-TYPE     31    107     76
D65V12, multiclass
        clus
vv       DEL PEAK 35(14Q11.2) MUTATED DEL PEAK 35(14Q11.2) WILD-TYPE
  CLUS_1                            6                             31
  CLUS_2                           81                            107
  CLUS_3                           33                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = DEL PEAK 36(15Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(15Q11.2) MUTATED       14     18     14     14
  DEL PEAK 36(15Q11.2) WILD-TYPE     27     32     20     15
D66V1, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                           14                             27
  CLUS_2                           18                             32
  CLUS_3                           14                             20
  CLUS_4                           14                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(15Q11.2) MUTATED       16     21     23
  DEL PEAK 36(15Q11.2) WILD-TYPE     31     35     28
D66V2, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                           16                             31
  CLUS_2                           21                             35
  CLUS_3                           23                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(15Q11.2) MUTATED       27     39      6     16     52     27
  DEL PEAK 36(15Q11.2) WILD-TYPE     16     76     23     71    117     31
D66V3, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                           27                             16
  CLUS_2                           39                             76
  CLUS_3                            6                             23
  CLUS_4                           16                             71
  CLUS_5                           52                            117
  CLUS_6                           27                             31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(15Q11.2) MUTATED       32     26     21     38
  DEL PEAK 36(15Q11.2) WILD-TYPE     58     69     36     87
D66V4, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                           32                             58
  CLUS_2                           26                             69
  CLUS_3                           21                             36
  CLUS_4                           38                             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(15Q11.2) MUTATED       33     36     37      8
  DEL PEAK 36(15Q11.2) WILD-TYPE     72     73     49     18
D66V5, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                           33                             72
  CLUS_2                           36                             73
  CLUS_3                           37                             49
  CLUS_4                            8                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(15Q11.2) MUTATED       30     29     22     21      6      6
  DEL PEAK 36(15Q11.2) WILD-TYPE     49     38     40     39     24     22
D66V6, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                           30                             49
  CLUS_2                           29                             38
  CLUS_3                           22                             40
  CLUS_4                           21                             39
  CLUS_5                            6                             24
  CLUS_6                            6                             22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(15Q11.2) MUTATED       34     42     64     26
  DEL PEAK 36(15Q11.2) WILD-TYPE     72    108     95     57
D66V7, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                           34                             72
  CLUS_2                           42                            108
  CLUS_3                           64                             95
  CLUS_4                           26                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(15Q11.2) MUTATED       58     54     54
  DEL PEAK 36(15Q11.2) WILD-TYPE    120    135     77
D66V8, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                           58                            120
  CLUS_2                           54                            135
  CLUS_3                           54                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(15Q11.2) MUTATED       76     30     32     21
  DEL PEAK 36(15Q11.2) WILD-TYPE    108     57     92     59
D66V9, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                           76                            108
  CLUS_2                           30                             57
  CLUS_3                           32                             92
  CLUS_4                           21                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(15Q11.2) MUTATED       31     39     71     18
  DEL PEAK 36(15Q11.2) WILD-TYPE     58     79    128     51
D66V10, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                           31                             58
  CLUS_2                           39                             79
  CLUS_3                           71                            128
  CLUS_4                           18                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(15Q11.2) MUTATED       18     37     13     35
  DEL PEAK 36(15Q11.2) WILD-TYPE     43     78     53     57
D66V11, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                           18                             43
  CLUS_2                           37                             78
  CLUS_3                           13                             53
  CLUS_4                           35                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(15Q11.2) MUTATED        9     65     29
  DEL PEAK 36(15Q11.2) WILD-TYPE     28    123     80
D66V12, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                            9                             28
  CLUS_2                           65                            123
  CLUS_3                           29                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = DEL PEAK 37(15Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(15Q21.1) MUTATED       13     17     13     14
  DEL PEAK 37(15Q21.1) WILD-TYPE     28     33     21     15
D67V1, multiclass
        clus
vv       DEL PEAK 37(15Q21.1) MUTATED DEL PEAK 37(15Q21.1) WILD-TYPE
  CLUS_1                           13                             28
  CLUS_2                           17                             33
  CLUS_3                           13                             21
  CLUS_4                           14                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(15Q21.1) MUTATED       16     20     21
  DEL PEAK 37(15Q21.1) WILD-TYPE     31     36     30
D67V2, multiclass
        clus
vv       DEL PEAK 37(15Q21.1) MUTATED DEL PEAK 37(15Q21.1) WILD-TYPE
  CLUS_1                           16                             31
  CLUS_2                           20                             36
  CLUS_3                           21                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(15Q21.1) MUTATED       26     35      8     15     55     30
  DEL PEAK 37(15Q21.1) WILD-TYPE     17     80     21     72    114     28
D67V3, multiclass
        clus
vv       DEL PEAK 37(15Q21.1) MUTATED DEL PEAK 37(15Q21.1) WILD-TYPE
  CLUS_1                           26                             17
  CLUS_2                           35                             80
  CLUS_3                            8                             21
  CLUS_4                           15                             72
  CLUS_5                           55                            114
  CLUS_6                           30                             28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(15Q21.1) MUTATED       31     29     27     35
  DEL PEAK 37(15Q21.1) WILD-TYPE     59     66     30     90
D67V4, multiclass
        clus
vv       DEL PEAK 37(15Q21.1) MUTATED DEL PEAK 37(15Q21.1) WILD-TYPE
  CLUS_1                           31                             59
  CLUS_2                           29                             66
  CLUS_3                           27                             30
  CLUS_4                           35                             90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(15Q21.1) MUTATED       35     36     35      8
  DEL PEAK 37(15Q21.1) WILD-TYPE     70     73     51     18
D67V5, multiclass
        clus
vv       DEL PEAK 37(15Q21.1) MUTATED DEL PEAK 37(15Q21.1) WILD-TYPE
  CLUS_1                           35                             70
  CLUS_2                           36                             73
  CLUS_3                           35                             51
  CLUS_4                            8                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(15Q21.1) MUTATED       32     27     22     21      5      7
  DEL PEAK 37(15Q21.1) WILD-TYPE     47     40     40     39     25     21
D67V6, multiclass
        clus
vv       DEL PEAK 37(15Q21.1) MUTATED DEL PEAK 37(15Q21.1) WILD-TYPE
  CLUS_1                           32                             47
  CLUS_2                           27                             40
  CLUS_3                           22                             40
  CLUS_4                           21                             39
  CLUS_5                            5                             25
  CLUS_6                            7                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(15Q21.1) MUTATED       34     47     64     23
  DEL PEAK 37(15Q21.1) WILD-TYPE     72    103     95     60
D67V7, multiclass
        clus
vv       DEL PEAK 37(15Q21.1) MUTATED DEL PEAK 37(15Q21.1) WILD-TYPE
  CLUS_1                           34                             72
  CLUS_2                           47                            103
  CLUS_3                           64                             95
  CLUS_4                           23                             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(15Q21.1) MUTATED       56     60     52
  DEL PEAK 37(15Q21.1) WILD-TYPE    122    129     79
D67V8, multiclass
        clus
vv       DEL PEAK 37(15Q21.1) MUTATED DEL PEAK 37(15Q21.1) WILD-TYPE
  CLUS_1                           56                            122
  CLUS_2                           60                            129
  CLUS_3                           52                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(15Q21.1) MUTATED       77     34     28     21
  DEL PEAK 37(15Q21.1) WILD-TYPE    107     53     96     59
D67V9, multiclass
        clus
vv       DEL PEAK 37(15Q21.1) MUTATED DEL PEAK 37(15Q21.1) WILD-TYPE
  CLUS_1                           77                            107
  CLUS_2                           34                             53
  CLUS_3                           28                             96
  CLUS_4                           21                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(15Q21.1) MUTATED       32     38     75     15
  DEL PEAK 37(15Q21.1) WILD-TYPE     57     80    124     54
D67V10, multiclass
        clus
vv       DEL PEAK 37(15Q21.1) MUTATED DEL PEAK 37(15Q21.1) WILD-TYPE
  CLUS_1                           32                             57
  CLUS_2                           38                             80
  CLUS_3                           75                            124
  CLUS_4                           15                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(15Q21.1) MUTATED       19     41     12     36
  DEL PEAK 37(15Q21.1) WILD-TYPE     42     74     54     56
D67V11, multiclass
        clus
vv       DEL PEAK 37(15Q21.1) MUTATED DEL PEAK 37(15Q21.1) WILD-TYPE
  CLUS_1                           19                             42
  CLUS_2                           41                             74
  CLUS_3                           12                             54
  CLUS_4                           36                             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(15Q21.1) MUTATED       10     70     28
  DEL PEAK 37(15Q21.1) WILD-TYPE     27    118     81
D67V12, multiclass
        clus
vv       DEL PEAK 37(15Q21.1) MUTATED DEL PEAK 37(15Q21.1) WILD-TYPE
  CLUS_1                           10                             27
  CLUS_2                           70                            118
  CLUS_3                           28                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = DEL PEAK 38(16P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16P13.3) MUTATED       16     21      7     12
  DEL PEAK 38(16P13.3) WILD-TYPE     25     29     27     17
D68V1, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                           16                             25
  CLUS_2                           21                             29
  CLUS_3                            7                             27
  CLUS_4                           12                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16P13.3) MUTATED       19     22     15
  DEL PEAK 38(16P13.3) WILD-TYPE     28     34     36
D68V2, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                           19                             28
  CLUS_2                           22                             34
  CLUS_3                           15                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(16P13.3) MUTATED       14     26     11     32     70     34
  DEL PEAK 38(16P13.3) WILD-TYPE     29     89     18     55     99     24
D68V3, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                           14                             29
  CLUS_2                           26                             89
  CLUS_3                           11                             18
  CLUS_4                           32                             55
  CLUS_5                           70                             99
  CLUS_6                           34                             24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16P13.3) MUTATED       43     34     28     36
  DEL PEAK 38(16P13.3) WILD-TYPE     47     61     29     89
D68V4, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                           43                             47
  CLUS_2                           34                             61
  CLUS_3                           28                             29
  CLUS_4                           36                             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16P13.3) MUTATED       34     40     41      8
  DEL PEAK 38(16P13.3) WILD-TYPE     71     69     45     18
D68V5, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                           34                             71
  CLUS_2                           40                             69
  CLUS_3                           41                             45
  CLUS_4                            8                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(16P13.3) MUTATED       36     22     26     23      7      9
  DEL PEAK 38(16P13.3) WILD-TYPE     43     45     36     37     23     19
D68V6, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                           36                             43
  CLUS_2                           22                             45
  CLUS_3                           26                             36
  CLUS_4                           23                             37
  CLUS_5                            7                             23
  CLUS_6                            9                             19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16P13.3) MUTATED       36     61     64     25
  DEL PEAK 38(16P13.3) WILD-TYPE     70     89     95     58
D68V7, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                           36                             70
  CLUS_2                           61                             89
  CLUS_3                           64                             95
  CLUS_4                           25                             58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16P13.3) MUTATED       65     70     51
  DEL PEAK 38(16P13.3) WILD-TYPE    113    119     80
D68V8, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                           65                            113
  CLUS_2                           70                            119
  CLUS_3                           51                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16P13.3) MUTATED       76     38     32     31
  DEL PEAK 38(16P13.3) WILD-TYPE    108     49     92     49
D68V9, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                           76                            108
  CLUS_2                           38                             49
  CLUS_3                           32                             92
  CLUS_4                           31                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16P13.3) MUTATED       33     45     78     21
  DEL PEAK 38(16P13.3) WILD-TYPE     56     73    121     48
D68V10, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                           33                             56
  CLUS_2                           45                             73
  CLUS_3                           78                            121
  CLUS_4                           21                             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16P13.3) MUTATED       25     51     12     38
  DEL PEAK 38(16P13.3) WILD-TYPE     36     64     54     54
D68V11, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                           25                             36
  CLUS_2                           51                             64
  CLUS_3                           12                             54
  CLUS_4                           38                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16P13.3) MUTATED       10     79     37
  DEL PEAK 38(16P13.3) WILD-TYPE     27    109     72
D68V12, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                           10                             27
  CLUS_2                           79                            109
  CLUS_3                           37                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = DEL PEAK 39(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(16Q23.1) MUTATED       16     21     14     11
  DEL PEAK 39(16Q23.1) WILD-TYPE     25     29     20     18
D69V1, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           16                             25
  CLUS_2                           21                             29
  CLUS_3                           14                             20
  CLUS_4                           11                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(16Q23.1) MUTATED       13     26     23
  DEL PEAK 39(16Q23.1) WILD-TYPE     34     30     28
D69V2, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           13                             34
  CLUS_2                           26                             30
  CLUS_3                           23                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(16Q23.1) MUTATED       16     34     12     40     82     26
  DEL PEAK 39(16Q23.1) WILD-TYPE     27     81     17     47     87     32
D69V3, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           16                             27
  CLUS_2                           34                             81
  CLUS_3                           12                             17
  CLUS_4                           40                             47
  CLUS_5                           82                             87
  CLUS_6                           26                             32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(16Q23.1) MUTATED       43     41     26     43
  DEL PEAK 39(16Q23.1) WILD-TYPE     47     54     31     82
D69V4, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           43                             47
  CLUS_2                           41                             54
  CLUS_3                           26                             31
  CLUS_4                           43                             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(16Q23.1) MUTATED       43     41     50      7
  DEL PEAK 39(16Q23.1) WILD-TYPE     62     68     36     19
D69V5, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           43                             62
  CLUS_2                           41                             68
  CLUS_3                           50                             36
  CLUS_4                            7                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(16Q23.1) MUTATED       38     31     24     27      8     13
  DEL PEAK 39(16Q23.1) WILD-TYPE     41     36     38     33     22     15
D69V6, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           38                             41
  CLUS_2                           31                             36
  CLUS_3                           24                             38
  CLUS_4                           27                             33
  CLUS_5                            8                             22
  CLUS_6                           13                             15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(16Q23.1) MUTATED       37     70     74     27
  DEL PEAK 39(16Q23.1) WILD-TYPE     69     80     85     56
D69V7, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           37                             69
  CLUS_2                           70                             80
  CLUS_3                           74                             85
  CLUS_4                           27                             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(16Q23.1) MUTATED       61     88     59
  DEL PEAK 39(16Q23.1) WILD-TYPE    117    101     72
D69V8, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           61                            117
  CLUS_2                           88                            101
  CLUS_3                           59                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(16Q23.1) MUTATED       80     46     37     38
  DEL PEAK 39(16Q23.1) WILD-TYPE    104     41     87     42
D69V9, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           80                            104
  CLUS_2                           46                             41
  CLUS_3                           37                             87
  CLUS_4                           38                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(16Q23.1) MUTATED       39     52     87     23
  DEL PEAK 39(16Q23.1) WILD-TYPE     50     66    112     46
D69V10, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           39                             50
  CLUS_2                           52                             66
  CLUS_3                           87                            112
  CLUS_4                           23                             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(16Q23.1) MUTATED       21     59     19     42
  DEL PEAK 39(16Q23.1) WILD-TYPE     40     56     47     50
D69V11, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           21                             40
  CLUS_2                           59                             56
  CLUS_3                           19                             47
  CLUS_4                           42                             50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(16Q23.1) MUTATED       10     96     35
  DEL PEAK 39(16Q23.1) WILD-TYPE     27     92     74
D69V12, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           10                             27
  CLUS_2                           96                             92
  CLUS_3                           35                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = DEL PEAK 40(17P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17P11.2) MUTATED       28     27     15     17
  DEL PEAK 40(17P11.2) WILD-TYPE     13     23     19     12
D70V1, multiclass
        clus
vv       DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE
  CLUS_1                           28                             13
  CLUS_2                           27                             23
  CLUS_3                           15                             19
  CLUS_4                           17                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17P11.2) MUTATED       32     31     24
  DEL PEAK 40(17P11.2) WILD-TYPE     15     25     27
D70V2, multiclass
        clus
vv       DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE
  CLUS_1                           32                             15
  CLUS_2                           31                             25
  CLUS_3                           24                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(17P11.2) MUTATED       31     38     14     63     93     33
  DEL PEAK 40(17P11.2) WILD-TYPE     12     77     15     24     76     25
D70V3, multiclass
        clus
vv       DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE
  CLUS_1                           31                             12
  CLUS_2                           38                             77
  CLUS_3                           14                             15
  CLUS_4                           63                             24
  CLUS_5                           93                             76
  CLUS_6                           33                             25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17P11.2) MUTATED       53     47     37     57
  DEL PEAK 40(17P11.2) WILD-TYPE     37     48     20     68
D70V4, multiclass
        clus
vv       DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE
  CLUS_1                           53                             37
  CLUS_2                           47                             48
  CLUS_3                           37                             20
  CLUS_4                           57                             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17P11.2) MUTATED       51     60     48     16
  DEL PEAK 40(17P11.2) WILD-TYPE     54     49     38     10
D70V5, multiclass
        clus
vv       DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE
  CLUS_1                           51                             54
  CLUS_2                           60                             49
  CLUS_3                           48                             38
  CLUS_4                           16                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(17P11.2) MUTATED       46     36     41     28     13     11
  DEL PEAK 40(17P11.2) WILD-TYPE     33     31     21     32     17     17
D70V6, multiclass
        clus
vv       DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE
  CLUS_1                           46                             33
  CLUS_2                           36                             31
  CLUS_3                           41                             21
  CLUS_4                           28                             32
  CLUS_5                           13                             17
  CLUS_6                           11                             17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17P11.2) MUTATED       63     72     93     43
  DEL PEAK 40(17P11.2) WILD-TYPE     43     78     66     40
D70V7, multiclass
        clus
vv       DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE
  CLUS_1                           63                             43
  CLUS_2                           72                             78
  CLUS_3                           93                             66
  CLUS_4                           43                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17P11.2) MUTATED      112     92     67
  DEL PEAK 40(17P11.2) WILD-TYPE     66     97     64
D70V8, multiclass
        clus
vv       DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE
  CLUS_1                          112                             66
  CLUS_2                           92                             97
  CLUS_3                           67                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17P11.2) MUTATED      109     52     59     41
  DEL PEAK 40(17P11.2) WILD-TYPE     75     35     65     39
D70V9, multiclass
        clus
vv       DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE
  CLUS_1                          109                             75
  CLUS_2                           52                             35
  CLUS_3                           59                             65
  CLUS_4                           41                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17P11.2) MUTATED       42     67    122     30
  DEL PEAK 40(17P11.2) WILD-TYPE     47     51     77     39
D70V10, multiclass
        clus
vv       DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE
  CLUS_1                           42                             47
  CLUS_2                           67                             51
  CLUS_3                          122                             77
  CLUS_4                           30                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17P11.2) MUTATED       31     60     28     62
  DEL PEAK 40(17P11.2) WILD-TYPE     30     55     38     30
D70V11, multiclass
        clus
vv       DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE
  CLUS_1                           31                             30
  CLUS_2                           60                             55
  CLUS_3                           28                             38
  CLUS_4                           62                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17P11.2) MUTATED       23    107     51
  DEL PEAK 40(17P11.2) WILD-TYPE     14     81     58
D70V12, multiclass
        clus
vv       DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE
  CLUS_1                           23                             14
  CLUS_2                          107                             81
  CLUS_3                           51                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = DEL PEAK 41(17Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17Q11.2) MUTATED       20      5     11      7
  DEL PEAK 41(17Q11.2) WILD-TYPE     21     45     23     22
D71V1, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                           20                             21
  CLUS_2                            5                             45
  CLUS_3                           11                             23
  CLUS_4                            7                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q11.2) MUTATED       21      5     17
  DEL PEAK 41(17Q11.2) WILD-TYPE     26     51     34
D71V2, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                           21                             26
  CLUS_2                            5                             51
  CLUS_3                           17                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(17Q11.2) MUTATED       22     28     11     34     17     20
  DEL PEAK 41(17Q11.2) WILD-TYPE     21     87     18     53    152     38
D71V3, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                           22                             21
  CLUS_2                           28                             87
  CLUS_3                           11                             18
  CLUS_4                           34                             53
  CLUS_5                           17                            152
  CLUS_6                           20                             38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17Q11.2) MUTATED       34      9     11     38
  DEL PEAK 41(17Q11.2) WILD-TYPE     56     86     46     87
D71V4, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                           34                             56
  CLUS_2                            9                             86
  CLUS_3                           11                             46
  CLUS_4                           38                             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17Q11.2) MUTATED       29     36     11      9
  DEL PEAK 41(17Q11.2) WILD-TYPE     76     73     75     17
D71V5, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                           29                             76
  CLUS_2                           36                             73
  CLUS_3                           11                             75
  CLUS_4                            9                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(17Q11.2) MUTATED       21     11     28     11      7      7
  DEL PEAK 41(17Q11.2) WILD-TYPE     58     56     34     49     23     21
D71V6, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                           21                             58
  CLUS_2                           11                             56
  CLUS_3                           28                             34
  CLUS_4                           11                             49
  CLUS_5                            7                             23
  CLUS_6                            7                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17Q11.2) MUTATED       40     13     52     26
  DEL PEAK 41(17Q11.2) WILD-TYPE     66    137    107     57
D71V7, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                           40                             66
  CLUS_2                           13                            137
  CLUS_3                           52                            107
  CLUS_4                           26                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q11.2) MUTATED       74     19     38
  DEL PEAK 41(17Q11.2) WILD-TYPE    104    170     93
D71V8, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                           74                            104
  CLUS_2                           19                            170
  CLUS_3                           38                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17Q11.2) MUTATED       49     25     40     14
  DEL PEAK 41(17Q11.2) WILD-TYPE    135     62     84     66
D71V9, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                           49                            135
  CLUS_2                           25                             62
  CLUS_3                           40                             84
  CLUS_4                           14                             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17Q11.2) MUTATED       12     27     64     25
  DEL PEAK 41(17Q11.2) WILD-TYPE     77     91    135     44
D71V10, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                           12                             77
  CLUS_2                           27                             91
  CLUS_3                           64                            135
  CLUS_4                           25                             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17Q11.2) MUTATED       20     27     13     28
  DEL PEAK 41(17Q11.2) WILD-TYPE     41     88     53     64
D71V11, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                           20                             41
  CLUS_2                           27                             88
  CLUS_3                           13                             53
  CLUS_4                           28                             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q11.2) MUTATED       14     42     32
  DEL PEAK 41(17Q11.2) WILD-TYPE     23    146     77
D71V12, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                           14                             23
  CLUS_2                           42                            146
  CLUS_3                           32                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(72) Variable = DEL PEAK 42(17Q25.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(17Q25.3) MUTATED       14      5      8      4
  DEL PEAK 42(17Q25.3) WILD-TYPE     27     45     26     25
D72V1, multiclass
        clus
vv       DEL PEAK 42(17Q25.3) MUTATED DEL PEAK 42(17Q25.3) WILD-TYPE
  CLUS_1                           14                             27
  CLUS_2                            5                             45
  CLUS_3                            8                             26
  CLUS_4                            4                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(17Q25.3) MUTATED       15      5     11
  DEL PEAK 42(17Q25.3) WILD-TYPE     32     51     40
D72V2, multiclass
        clus
vv       DEL PEAK 42(17Q25.3) MUTATED DEL PEAK 42(17Q25.3) WILD-TYPE
  CLUS_1                           15                             32
  CLUS_2                            5                             51
  CLUS_3                           11                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(17Q25.3) MUTATED       14     20      7     32     16     13
  DEL PEAK 42(17Q25.3) WILD-TYPE     29     95     22     55    153     45
D72V3, multiclass
        clus
vv       DEL PEAK 42(17Q25.3) MUTATED DEL PEAK 42(17Q25.3) WILD-TYPE
  CLUS_1                           14                             29
  CLUS_2                           20                             95
  CLUS_3                            7                             22
  CLUS_4                           32                             55
  CLUS_5                           16                            153
  CLUS_6                           13                             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(17Q25.3) MUTATED       25     12     11     26
  DEL PEAK 42(17Q25.3) WILD-TYPE     65     83     46     99
D72V4, multiclass
        clus
vv       DEL PEAK 42(17Q25.3) MUTATED DEL PEAK 42(17Q25.3) WILD-TYPE
  CLUS_1                           25                             65
  CLUS_2                           12                             83
  CLUS_3                           11                             46
  CLUS_4                           26                             99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(17Q25.3) MUTATED       19     25     16      6
  DEL PEAK 42(17Q25.3) WILD-TYPE     86     84     70     20
D72V5, multiclass
        clus
vv       DEL PEAK 42(17Q25.3) MUTATED DEL PEAK 42(17Q25.3) WILD-TYPE
  CLUS_1                           19                             86
  CLUS_2                           25                             84
  CLUS_3                           16                             70
  CLUS_4                            6                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(17Q25.3) MUTATED       15     13     17     11      7      3
  DEL PEAK 42(17Q25.3) WILD-TYPE     64     54     45     49     23     25
D72V6, multiclass
        clus
vv       DEL PEAK 42(17Q25.3) MUTATED DEL PEAK 42(17Q25.3) WILD-TYPE
  CLUS_1                           15                             64
  CLUS_2                           13                             54
  CLUS_3                           17                             45
  CLUS_4                           11                             49
  CLUS_5                            7                             23
  CLUS_6                            3                             25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(17Q25.3) MUTATED       32     18     37     15
  DEL PEAK 42(17Q25.3) WILD-TYPE     74    132    122     68
D72V7, multiclass
        clus
vv       DEL PEAK 42(17Q25.3) MUTATED DEL PEAK 42(17Q25.3) WILD-TYPE
  CLUS_1                           32                             74
  CLUS_2                           18                            132
  CLUS_3                           37                            122
  CLUS_4                           15                             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(17Q25.3) MUTATED       51     25     26
  DEL PEAK 42(17Q25.3) WILD-TYPE    127    164    105
D72V8, multiclass
        clus
vv       DEL PEAK 42(17Q25.3) MUTATED DEL PEAK 42(17Q25.3) WILD-TYPE
  CLUS_1                           51                            127
  CLUS_2                           25                            164
  CLUS_3                           26                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(17Q25.3) MUTATED       38     18     31     12
  DEL PEAK 42(17Q25.3) WILD-TYPE    146     69     93     68
D72V9, multiclass
        clus
vv       DEL PEAK 42(17Q25.3) MUTATED DEL PEAK 42(17Q25.3) WILD-TYPE
  CLUS_1                           38                            146
  CLUS_2                           18                             69
  CLUS_3                           31                             93
  CLUS_4                           12                             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(17Q25.3) MUTATED        8     28     48     15
  DEL PEAK 42(17Q25.3) WILD-TYPE     81     90    151     54
D72V10, multiclass
        clus
vv       DEL PEAK 42(17Q25.3) MUTATED DEL PEAK 42(17Q25.3) WILD-TYPE
  CLUS_1                            8                             81
  CLUS_2                           28                             90
  CLUS_3                           48                            151
  CLUS_4                           15                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(17Q25.3) MUTATED       17     26      7     20
  DEL PEAK 42(17Q25.3) WILD-TYPE     44     89     59     72
D72V11, multiclass
        clus
vv       DEL PEAK 42(17Q25.3) MUTATED DEL PEAK 42(17Q25.3) WILD-TYPE
  CLUS_1                           17                             44
  CLUS_2                           26                             89
  CLUS_3                            7                             59
  CLUS_4                           20                             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(17Q25.3) MUTATED        8     38     24
  DEL PEAK 42(17Q25.3) WILD-TYPE     29    150     85
D72V12, multiclass
        clus
vv       DEL PEAK 42(17Q25.3) MUTATED DEL PEAK 42(17Q25.3) WILD-TYPE
  CLUS_1                            8                             29
  CLUS_2                           38                            150
  CLUS_3                           24                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(73) Variable = DEL PEAK 43(18Q23) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q23) MUTATED       22     23     14     12
  DEL PEAK 43(18Q23) WILD-TYPE     19     27     20     17
D73V1, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         22                           19
  CLUS_2                         23                           27
  CLUS_3                         14                           20
  CLUS_4                         12                           17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q23) MUTATED       27     24     20
  DEL PEAK 43(18Q23) WILD-TYPE     20     32     31
D73V2, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         27                           20
  CLUS_2                         24                           32
  CLUS_3                         20                           31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(18Q23) MUTATED       31     39     15     40     80     29
  DEL PEAK 43(18Q23) WILD-TYPE     12     76     14     47     89     29
D73V3, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         31                           12
  CLUS_2                         39                           76
  CLUS_3                         15                           14
  CLUS_4                         40                           47
  CLUS_5                         80                           89
  CLUS_6                         29                           29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q23) MUTATED       46     44     34     52
  DEL PEAK 43(18Q23) WILD-TYPE     44     51     23     73
D73V4, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         46                           44
  CLUS_2                         44                           51
  CLUS_3                         34                           23
  CLUS_4                         52                           73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q23) MUTATED       47     57     38     13
  DEL PEAK 43(18Q23) WILD-TYPE     58     52     48     13
D73V5, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         47                           58
  CLUS_2                         57                           52
  CLUS_3                         38                           48
  CLUS_4                         13                           13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(18Q23) MUTATED       33     33     34     32     14      9
  DEL PEAK 43(18Q23) WILD-TYPE     46     34     28     28     16     19
D73V6, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         33                           46
  CLUS_2                         33                           34
  CLUS_3                         34                           28
  CLUS_4                         32                           28
  CLUS_5                         14                           16
  CLUS_6                          9                           19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q23) MUTATED       49     73     73     37
  DEL PEAK 43(18Q23) WILD-TYPE     57     77     86     46
D73V7, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         49                           57
  CLUS_2                         73                           77
  CLUS_3                         73                           86
  CLUS_4                         37                           46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q23) MUTATED       86     91     55
  DEL PEAK 43(18Q23) WILD-TYPE     92     98     76
D73V8, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         86                           92
  CLUS_2                         91                           98
  CLUS_3                         55                           76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q23) MUTATED       95     41     50     37
  DEL PEAK 43(18Q23) WILD-TYPE     89     46     74     43
D73V9, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         95                           89
  CLUS_2                         41                           46
  CLUS_3                         50                           74
  CLUS_4                         37                           43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q23) MUTATED       43     55     98     27
  DEL PEAK 43(18Q23) WILD-TYPE     46     63    101     42
D73V10, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         43                           46
  CLUS_2                         55                           63
  CLUS_3                         98                          101
  CLUS_4                         27                           42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q23) MUTATED       23     52     26     57
  DEL PEAK 43(18Q23) WILD-TYPE     38     63     40     35
D73V11, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         23                           38
  CLUS_2                         52                           63
  CLUS_3                         26                           40
  CLUS_4                         57                           35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q23) MUTATED       17     94     47
  DEL PEAK 43(18Q23) WILD-TYPE     20     94     62
D73V12, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         17                           20
  CLUS_2                         94                           94
  CLUS_3                         47                           62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(74) Variable = DEL PEAK 44(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19P13.3) MUTATED       20     23     17     19
  DEL PEAK 44(19P13.3) WILD-TYPE     21     27     17     10
D74V1, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           20                             21
  CLUS_2                           23                             27
  CLUS_3                           17                             17
  CLUS_4                           19                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED       23     25     31
  DEL PEAK 44(19P13.3) WILD-TYPE     24     31     20
D74V2, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           23                             24
  CLUS_2                           25                             31
  CLUS_3                           31                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(19P13.3) MUTATED       27     34     14     50     72     39
  DEL PEAK 44(19P13.3) WILD-TYPE     16     81     15     37     97     19
D74V3, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           27                             16
  CLUS_2                           34                             81
  CLUS_3                           14                             15
  CLUS_4                           50                             37
  CLUS_5                           72                             97
  CLUS_6                           39                             19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19P13.3) MUTATED       46     36     32     54
  DEL PEAK 44(19P13.3) WILD-TYPE     44     59     25     71
D74V4, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           46                             44
  CLUS_2                           36                             59
  CLUS_3                           32                             25
  CLUS_4                           54                             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19P13.3) MUTATED       42     59     45     11
  DEL PEAK 44(19P13.3) WILD-TYPE     63     50     41     15
D74V5, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           42                             63
  CLUS_2                           59                             50
  CLUS_3                           45                             41
  CLUS_4                           11                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(19P13.3) MUTATED       33     39     34     26     16      9
  DEL PEAK 44(19P13.3) WILD-TYPE     46     28     28     34     14     19
D74V6, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           33                             46
  CLUS_2                           39                             28
  CLUS_3                           34                             28
  CLUS_4                           26                             34
  CLUS_5                           16                             14
  CLUS_6                            9                             19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19P13.3) MUTATED       52     58     85     40
  DEL PEAK 44(19P13.3) WILD-TYPE     54     92     74     43
D74V7, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           52                             54
  CLUS_2                           58                             92
  CLUS_3                           85                             74
  CLUS_4                           40                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED       86     76     73
  DEL PEAK 44(19P13.3) WILD-TYPE     92    113     58
D74V8, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           86                             92
  CLUS_2                           76                            113
  CLUS_3                           73                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19P13.3) MUTATED       99     45     49     31
  DEL PEAK 44(19P13.3) WILD-TYPE     85     42     75     49
D74V9, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           99                             85
  CLUS_2                           45                             42
  CLUS_3                           49                             75
  CLUS_4                           31                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19P13.3) MUTATED       30     57    112     25
  DEL PEAK 44(19P13.3) WILD-TYPE     59     61     87     44
D74V10, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           30                             59
  CLUS_2                           57                             61
  CLUS_3                          112                             87
  CLUS_4                           25                             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19P13.3) MUTATED       30     63     18     41
  DEL PEAK 44(19P13.3) WILD-TYPE     31     52     48     51
D74V11, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           30                             31
  CLUS_2                           63                             52
  CLUS_3                           18                             48
  CLUS_4                           41                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED       21     95     36
  DEL PEAK 44(19P13.3) WILD-TYPE     16     93     73
D74V12, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           21                             16
  CLUS_2                           95                             93
  CLUS_3                           36                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(75) Variable = DEL PEAK 45(19Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(19Q13.32) MUTATED       10     17     11      9
  DEL PEAK 45(19Q13.32) WILD-TYPE     31     33     23     20
D75V1, multiclass
        clus
vv       DEL PEAK 45(19Q13.32) MUTATED DEL PEAK 45(19Q13.32) WILD-TYPE
  CLUS_1                            10                              31
  CLUS_2                            17                              33
  CLUS_3                            11                              23
  CLUS_4                             9                              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19Q13.32) MUTATED       13     20     14
  DEL PEAK 45(19Q13.32) WILD-TYPE     34     36     37
D75V2, multiclass
        clus
vv       DEL PEAK 45(19Q13.32) MUTATED DEL PEAK 45(19Q13.32) WILD-TYPE
  CLUS_1                            13                              34
  CLUS_2                            20                              36
  CLUS_3                            14                              37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 45(19Q13.32) MUTATED       18     13      9     22     73     14
  DEL PEAK 45(19Q13.32) WILD-TYPE     25    102     20     65     96     44
D75V3, multiclass
        clus
vv       DEL PEAK 45(19Q13.32) MUTATED DEL PEAK 45(19Q13.32) WILD-TYPE
  CLUS_1                            18                              25
  CLUS_2                            13                             102
  CLUS_3                             9                              20
  CLUS_4                            22                              65
  CLUS_5                            73                              96
  CLUS_6                            14                              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(19Q13.32) MUTATED       30     36     20     21
  DEL PEAK 45(19Q13.32) WILD-TYPE     60     59     37    104
D75V4, multiclass
        clus
vv       DEL PEAK 45(19Q13.32) MUTATED DEL PEAK 45(19Q13.32) WILD-TYPE
  CLUS_1                            30                              60
  CLUS_2                            36                              59
  CLUS_3                            20                              37
  CLUS_4                            21                             104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(19Q13.32) MUTATED       33     24     37      6
  DEL PEAK 45(19Q13.32) WILD-TYPE     72     85     49     20
D75V5, multiclass
        clus
vv       DEL PEAK 45(19Q13.32) MUTATED DEL PEAK 45(19Q13.32) WILD-TYPE
  CLUS_1                            33                              72
  CLUS_2                            24                              85
  CLUS_3                            37                              49
  CLUS_4                             6                              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 45(19Q13.32) MUTATED       25     24     17     22      6      6
  DEL PEAK 45(19Q13.32) WILD-TYPE     54     43     45     38     24     22
D75V6, multiclass
        clus
vv       DEL PEAK 45(19Q13.32) MUTATED DEL PEAK 45(19Q13.32) WILD-TYPE
  CLUS_1                            25                              54
  CLUS_2                            24                              43
  CLUS_3                            17                              45
  CLUS_4                            22                              38
  CLUS_5                             6                              24
  CLUS_6                             6                              22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(19Q13.32) MUTATED       26     60     41     22
  DEL PEAK 45(19Q13.32) WILD-TYPE     80     90    118     61
D75V7, multiclass
        clus
vv       DEL PEAK 45(19Q13.32) MUTATED DEL PEAK 45(19Q13.32) WILD-TYPE
  CLUS_1                            26                              80
  CLUS_2                            60                              90
  CLUS_3                            41                             118
  CLUS_4                            22                              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19Q13.32) MUTATED       42     72     35
  DEL PEAK 45(19Q13.32) WILD-TYPE    136    117     96
D75V8, multiclass
        clus
vv       DEL PEAK 45(19Q13.32) MUTATED DEL PEAK 45(19Q13.32) WILD-TYPE
  CLUS_1                            42                             136
  CLUS_2                            72                             117
  CLUS_3                            35                              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(19Q13.32) MUTATED       65     26     22     28
  DEL PEAK 45(19Q13.32) WILD-TYPE    119     61    102     52
D75V9, multiclass
        clus
vv       DEL PEAK 45(19Q13.32) MUTATED DEL PEAK 45(19Q13.32) WILD-TYPE
  CLUS_1                            65                             119
  CLUS_2                            26                              61
  CLUS_3                            22                             102
  CLUS_4                            28                              52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(19Q13.32) MUTATED       25     41     58     17
  DEL PEAK 45(19Q13.32) WILD-TYPE     64     77    141     52
D75V10, multiclass
        clus
vv       DEL PEAK 45(19Q13.32) MUTATED DEL PEAK 45(19Q13.32) WILD-TYPE
  CLUS_1                            25                              64
  CLUS_2                            41                              77
  CLUS_3                            58                             141
  CLUS_4                            17                              52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(19Q13.32) MUTATED       12     41     16     30
  DEL PEAK 45(19Q13.32) WILD-TYPE     49     74     50     62
D75V11, multiclass
        clus
vv       DEL PEAK 45(19Q13.32) MUTATED DEL PEAK 45(19Q13.32) WILD-TYPE
  CLUS_1                            12                              49
  CLUS_2                            41                              74
  CLUS_3                            16                              50
  CLUS_4                            30                              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19Q13.32) MUTATED        7     61     31
  DEL PEAK 45(19Q13.32) WILD-TYPE     30    127     78
D75V12, multiclass
        clus
vv       DEL PEAK 45(19Q13.32) MUTATED DEL PEAK 45(19Q13.32) WILD-TYPE
  CLUS_1                             7                              30
  CLUS_2                            61                             127
  CLUS_3                            31                              78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(76) Variable = DEL PEAK 46(21Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(21Q11.2) MUTATED       21     25     16     11
  DEL PEAK 46(21Q11.2) WILD-TYPE     20     25     18     18
D76V1, multiclass
        clus
vv       DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE
  CLUS_1                           21                             20
  CLUS_2                           25                             25
  CLUS_3                           16                             18
  CLUS_4                           11                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(21Q11.2) MUTATED       24     28     21
  DEL PEAK 46(21Q11.2) WILD-TYPE     23     28     30
D76V2, multiclass
        clus
vv       DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE
  CLUS_1                           24                             23
  CLUS_2                           28                             28
  CLUS_3                           21                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 46(21Q11.2) MUTATED       19     40     19     37     93     36
  DEL PEAK 46(21Q11.2) WILD-TYPE     24     75     10     50     76     22
D76V3, multiclass
        clus
vv       DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE
  CLUS_1                           19                             24
  CLUS_2                           40                             75
  CLUS_3                           19                             10
  CLUS_4                           37                             50
  CLUS_5                           93                             76
  CLUS_6                           36                             22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(21Q11.2) MUTATED       45     56     31     48
  DEL PEAK 46(21Q11.2) WILD-TYPE     45     39     26     77
D76V4, multiclass
        clus
vv       DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE
  CLUS_1                           45                             45
  CLUS_2                           56                             39
  CLUS_3                           31                             26
  CLUS_4                           48                             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(21Q11.2) MUTATED       47     51     45     11
  DEL PEAK 46(21Q11.2) WILD-TYPE     58     58     41     15
D76V5, multiclass
        clus
vv       DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE
  CLUS_1                           47                             58
  CLUS_2                           51                             58
  CLUS_3                           45                             41
  CLUS_4                           11                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 46(21Q11.2) MUTATED       44     33     28     29     11      9
  DEL PEAK 46(21Q11.2) WILD-TYPE     35     34     34     31     19     19
D76V6, multiclass
        clus
vv       DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE
  CLUS_1                           44                             35
  CLUS_2                           33                             34
  CLUS_3                           28                             34
  CLUS_4                           29                             31
  CLUS_5                           11                             19
  CLUS_6                            9                             19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(21Q11.2) MUTATED       46     80     85     32
  DEL PEAK 46(21Q11.2) WILD-TYPE     60     70     74     51
D76V7, multiclass
        clus
vv       DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE
  CLUS_1                           46                             60
  CLUS_2                           80                             70
  CLUS_3                           85                             74
  CLUS_4                           32                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(21Q11.2) MUTATED       80     96     67
  DEL PEAK 46(21Q11.2) WILD-TYPE     98     93     64
D76V8, multiclass
        clus
vv       DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE
  CLUS_1                           80                             98
  CLUS_2                           96                             93
  CLUS_3                           67                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(21Q11.2) MUTATED      106     52     41     34
  DEL PEAK 46(21Q11.2) WILD-TYPE     78     35     83     46
D76V9, multiclass
        clus
vv       DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE
  CLUS_1                          106                             78
  CLUS_2                           52                             35
  CLUS_3                           41                             83
  CLUS_4                           34                             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(21Q11.2) MUTATED       42     66    108     17
  DEL PEAK 46(21Q11.2) WILD-TYPE     47     52     91     52
D76V10, multiclass
        clus
vv       DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE
  CLUS_1                           42                             47
  CLUS_2                           66                             52
  CLUS_3                          108                             91
  CLUS_4                           17                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(21Q11.2) MUTATED       29     68     19     47
  DEL PEAK 46(21Q11.2) WILD-TYPE     32     47     47     45
D76V11, multiclass
        clus
vv       DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE
  CLUS_1                           29                             32
  CLUS_2                           68                             47
  CLUS_3                           19                             47
  CLUS_4                           47                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(21Q11.2) MUTATED       20     99     44
  DEL PEAK 46(21Q11.2) WILD-TYPE     17     89     65
D76V12, multiclass
        clus
vv       DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE
  CLUS_1                           20                             17
  CLUS_2                           99                             89
  CLUS_3                           44                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(77) Variable = DEL PEAK 47(21Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(21Q22.3) MUTATED       25     33     20     17
  DEL PEAK 47(21Q22.3) WILD-TYPE     16     17     14     12
D77V1, multiclass
        clus
vv       DEL PEAK 47(21Q22.3) MUTATED DEL PEAK 47(21Q22.3) WILD-TYPE
  CLUS_1                           25                             16
  CLUS_2                           33                             17
  CLUS_3                           20                             14
  CLUS_4                           17                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(21Q22.3) MUTATED       30     39     26
  DEL PEAK 47(21Q22.3) WILD-TYPE     17     17     25
D77V2, multiclass
        clus
vv       DEL PEAK 47(21Q22.3) MUTATED DEL PEAK 47(21Q22.3) WILD-TYPE
  CLUS_1                           30                             17
  CLUS_2                           39                             17
  CLUS_3                           26                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 47(21Q22.3) MUTATED       25     42     22     41    111     40
  DEL PEAK 47(21Q22.3) WILD-TYPE     18     73      7     46     58     18
D77V3, multiclass
        clus
vv       DEL PEAK 47(21Q22.3) MUTATED DEL PEAK 47(21Q22.3) WILD-TYPE
  CLUS_1                           25                             18
  CLUS_2                           42                             73
  CLUS_3                           22                              7
  CLUS_4                           41                             46
  CLUS_5                          111                             58
  CLUS_6                           40                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(21Q22.3) MUTATED       51     61     35     52
  DEL PEAK 47(21Q22.3) WILD-TYPE     39     34     22     73
D77V4, multiclass
        clus
vv       DEL PEAK 47(21Q22.3) MUTATED DEL PEAK 47(21Q22.3) WILD-TYPE
  CLUS_1                           51                             39
  CLUS_2                           61                             34
  CLUS_3                           35                             22
  CLUS_4                           52                             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(21Q22.3) MUTATED       56     60     50     15
  DEL PEAK 47(21Q22.3) WILD-TYPE     49     49     36     11
D77V5, multiclass
        clus
vv       DEL PEAK 47(21Q22.3) MUTATED DEL PEAK 47(21Q22.3) WILD-TYPE
  CLUS_1                           56                             49
  CLUS_2                           60                             49
  CLUS_3                           50                             36
  CLUS_4                           15                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 47(21Q22.3) MUTATED       45     37     37     38     14     10
  DEL PEAK 47(21Q22.3) WILD-TYPE     34     30     25     22     16     18
D77V6, multiclass
        clus
vv       DEL PEAK 47(21Q22.3) MUTATED DEL PEAK 47(21Q22.3) WILD-TYPE
  CLUS_1                           45                             34
  CLUS_2                           37                             30
  CLUS_3                           37                             25
  CLUS_4                           38                             22
  CLUS_5                           14                             16
  CLUS_6                           10                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(21Q22.3) MUTATED       54     95     91     39
  DEL PEAK 47(21Q22.3) WILD-TYPE     52     55     68     44
D77V7, multiclass
        clus
vv       DEL PEAK 47(21Q22.3) MUTATED DEL PEAK 47(21Q22.3) WILD-TYPE
  CLUS_1                           54                             52
  CLUS_2                           95                             55
  CLUS_3                           91                             68
  CLUS_4                           39                             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(21Q22.3) MUTATED       92    118     69
  DEL PEAK 47(21Q22.3) WILD-TYPE     86     71     62
D77V8, multiclass
        clus
vv       DEL PEAK 47(21Q22.3) MUTATED DEL PEAK 47(21Q22.3) WILD-TYPE
  CLUS_1                           92                             86
  CLUS_2                          118                             71
  CLUS_3                           69                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(21Q22.3) MUTATED      119     55     52     43
  DEL PEAK 47(21Q22.3) WILD-TYPE     65     32     72     37
D77V9, multiclass
        clus
vv       DEL PEAK 47(21Q22.3) MUTATED DEL PEAK 47(21Q22.3) WILD-TYPE
  CLUS_1                          119                             65
  CLUS_2                           55                             32
  CLUS_3                           52                             72
  CLUS_4                           43                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(21Q22.3) MUTATED       55     70    121     23
  DEL PEAK 47(21Q22.3) WILD-TYPE     34     48     78     46
D77V10, multiclass
        clus
vv       DEL PEAK 47(21Q22.3) MUTATED DEL PEAK 47(21Q22.3) WILD-TYPE
  CLUS_1                           55                             34
  CLUS_2                           70                             48
  CLUS_3                          121                             78
  CLUS_4                           23                             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(21Q22.3) MUTATED       31     67     25     55
  DEL PEAK 47(21Q22.3) WILD-TYPE     30     48     41     37
D77V11, multiclass
        clus
vv       DEL PEAK 47(21Q22.3) MUTATED DEL PEAK 47(21Q22.3) WILD-TYPE
  CLUS_1                           31                             30
  CLUS_2                           67                             48
  CLUS_3                           25                             41
  CLUS_4                           55                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(21Q22.3) MUTATED       19    106     53
  DEL PEAK 47(21Q22.3) WILD-TYPE     18     82     56
D77V12, multiclass
        clus
vv       DEL PEAK 47(21Q22.3) MUTATED DEL PEAK 47(21Q22.3) WILD-TYPE
  CLUS_1                           19                             18
  CLUS_2                          106                             82
  CLUS_3                           53                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(78) Variable = DEL PEAK 48(22Q11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(22Q11.21) MUTATED        5     10      8     11
  DEL PEAK 48(22Q11.21) WILD-TYPE     36     40     26     18
D78V1, multiclass
        clus
vv       DEL PEAK 48(22Q11.21) MUTATED DEL PEAK 48(22Q11.21) WILD-TYPE
  CLUS_1                             5                              36
  CLUS_2                            10                              40
  CLUS_3                             8                              26
  CLUS_4                            11                              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q11.21) MUTATED        6     12     16
  DEL PEAK 48(22Q11.21) WILD-TYPE     41     44     35
D78V2, multiclass
        clus
vv       DEL PEAK 48(22Q11.21) MUTATED DEL PEAK 48(22Q11.21) WILD-TYPE
  CLUS_1                             6                              41
  CLUS_2                            12                              44
  CLUS_3                            16                              35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 48(22Q11.21) MUTATED        7     27      0     24     27     10
  DEL PEAK 48(22Q11.21) WILD-TYPE     36     88     29     63    142     48
D78V3, multiclass
        clus
vv       DEL PEAK 48(22Q11.21) MUTATED DEL PEAK 48(22Q11.21) WILD-TYPE
  CLUS_1                             7                              36
  CLUS_2                            27                              88
  CLUS_3                             0                              29
  CLUS_4                            24                              63
  CLUS_5                            27                             142
  CLUS_6                            10                              48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(22Q11.21) MUTATED       16     12      9     29
  DEL PEAK 48(22Q11.21) WILD-TYPE     74     83     48     96
D78V4, multiclass
        clus
vv       DEL PEAK 48(22Q11.21) MUTATED DEL PEAK 48(22Q11.21) WILD-TYPE
  CLUS_1                            16                              74
  CLUS_2                            12                              83
  CLUS_3                             9                              48
  CLUS_4                            29                              96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(22Q11.21) MUTATED       20     26     15      2
  DEL PEAK 48(22Q11.21) WILD-TYPE     85     83     71     24
D78V5, multiclass
        clus
vv       DEL PEAK 48(22Q11.21) MUTATED DEL PEAK 48(22Q11.21) WILD-TYPE
  CLUS_1                            20                              85
  CLUS_2                            26                              83
  CLUS_3                            15                              71
  CLUS_4                             2                              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 48(22Q11.21) MUTATED       22     11     12      9      5      4
  DEL PEAK 48(22Q11.21) WILD-TYPE     57     56     50     51     25     24
D78V6, multiclass
        clus
vv       DEL PEAK 48(22Q11.21) MUTATED DEL PEAK 48(22Q11.21) WILD-TYPE
  CLUS_1                            22                              57
  CLUS_2                            11                              56
  CLUS_3                            12                              50
  CLUS_4                             9                              51
  CLUS_5                             5                              25
  CLUS_6                             4                              24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(22Q11.21) MUTATED       20     21     38     16
  DEL PEAK 48(22Q11.21) WILD-TYPE     86    129    121     67
D78V7, multiclass
        clus
vv       DEL PEAK 48(22Q11.21) MUTATED DEL PEAK 48(22Q11.21) WILD-TYPE
  CLUS_1                            20                              86
  CLUS_2                            21                             129
  CLUS_3                            38                             121
  CLUS_4                            16                              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q11.21) MUTATED       23     31     41
  DEL PEAK 48(22Q11.21) WILD-TYPE    155    158     90
D78V8, multiclass
        clus
vv       DEL PEAK 48(22Q11.21) MUTATED DEL PEAK 48(22Q11.21) WILD-TYPE
  CLUS_1                            23                             155
  CLUS_2                            31                             158
  CLUS_3                            41                              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(22Q11.21) MUTATED       39     12     19     17
  DEL PEAK 48(22Q11.21) WILD-TYPE    145     75    105     63
D78V9, multiclass
        clus
vv       DEL PEAK 48(22Q11.21) MUTATED DEL PEAK 48(22Q11.21) WILD-TYPE
  CLUS_1                            39                             145
  CLUS_2                            12                              75
  CLUS_3                            19                             105
  CLUS_4                            17                              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(22Q11.21) MUTATED       15     27     36      9
  DEL PEAK 48(22Q11.21) WILD-TYPE     74     91    163     60
D78V10, multiclass
        clus
vv       DEL PEAK 48(22Q11.21) MUTATED DEL PEAK 48(22Q11.21) WILD-TYPE
  CLUS_1                            15                              74
  CLUS_2                            27                              91
  CLUS_3                            36                             163
  CLUS_4                             9                              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(22Q11.21) MUTATED        7     20     11     21
  DEL PEAK 48(22Q11.21) WILD-TYPE     54     95     55     71
D78V11, multiclass
        clus
vv       DEL PEAK 48(22Q11.21) MUTATED DEL PEAK 48(22Q11.21) WILD-TYPE
  CLUS_1                             7                              54
  CLUS_2                            20                              95
  CLUS_3                            11                              55
  CLUS_4                            21                              71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q11.21) MUTATED        5     41     13
  DEL PEAK 48(22Q11.21) WILD-TYPE     32    147     96
D78V12, multiclass
        clus
vv       DEL PEAK 48(22Q11.21) MUTATED DEL PEAK 48(22Q11.21) WILD-TYPE
  CLUS_1                             5                              32
  CLUS_2                            41                             147
  CLUS_3                            13                              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(79) Variable = DEL PEAK 49(22Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 49(22Q13.32) MUTATED        7      7     10     16
  DEL PEAK 49(22Q13.32) WILD-TYPE     34     43     24     13
D79V1, multiclass
        clus
vv       DEL PEAK 49(22Q13.32) MUTATED DEL PEAK 49(22Q13.32) WILD-TYPE
  CLUS_1                             7                              34
  CLUS_2                             7                              43
  CLUS_3                            10                              24
  CLUS_4                            16                              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(22Q13.32) MUTATED       10      9     21
  DEL PEAK 49(22Q13.32) WILD-TYPE     37     47     30
D79V2, multiclass
        clus
vv       DEL PEAK 49(22Q13.32) MUTATED DEL PEAK 49(22Q13.32) WILD-TYPE
  CLUS_1                            10                              37
  CLUS_2                             9                              47
  CLUS_3                            21                              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 49(22Q13.32) MUTATED       10     33      0     29     33     22
  DEL PEAK 49(22Q13.32) WILD-TYPE     33     82     29     58    136     36
D79V3, multiclass
        clus
vv       DEL PEAK 49(22Q13.32) MUTATED DEL PEAK 49(22Q13.32) WILD-TYPE
  CLUS_1                            10                              33
  CLUS_2                            33                              82
  CLUS_3                             0                              29
  CLUS_4                            29                              58
  CLUS_5                            33                             136
  CLUS_6                            22                              36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 49(22Q13.32) MUTATED       25     21     10     38
  DEL PEAK 49(22Q13.32) WILD-TYPE     65     74     47     87
D79V4, multiclass
        clus
vv       DEL PEAK 49(22Q13.32) MUTATED DEL PEAK 49(22Q13.32) WILD-TYPE
  CLUS_1                            25                              65
  CLUS_2                            21                              74
  CLUS_3                            10                              47
  CLUS_4                            38                              87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 49(22Q13.32) MUTATED       24     36     22      2
  DEL PEAK 49(22Q13.32) WILD-TYPE     81     73     64     24
D79V5, multiclass
        clus
vv       DEL PEAK 49(22Q13.32) MUTATED DEL PEAK 49(22Q13.32) WILD-TYPE
  CLUS_1                            24                              81
  CLUS_2                            36                              73
  CLUS_3                            22                              64
  CLUS_4                             2                              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 49(22Q13.32) MUTATED       25     16     19     14      6      4
  DEL PEAK 49(22Q13.32) WILD-TYPE     54     51     43     46     24     24
D79V6, multiclass
        clus
vv       DEL PEAK 49(22Q13.32) MUTATED DEL PEAK 49(22Q13.32) WILD-TYPE
  CLUS_1                            25                              54
  CLUS_2                            16                              51
  CLUS_3                            19                              43
  CLUS_4                            14                              46
  CLUS_5                             6                              24
  CLUS_6                             4                              24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 49(22Q13.32) MUTATED       28     23     59     17
  DEL PEAK 49(22Q13.32) WILD-TYPE     78    127    100     66
D79V7, multiclass
        clus
vv       DEL PEAK 49(22Q13.32) MUTATED DEL PEAK 49(22Q13.32) WILD-TYPE
  CLUS_1                            28                              78
  CLUS_2                            23                             127
  CLUS_3                            59                             100
  CLUS_4                            17                              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(22Q13.32) MUTATED       38     30     59
  DEL PEAK 49(22Q13.32) WILD-TYPE    140    159     72
D79V8, multiclass
        clus
vv       DEL PEAK 49(22Q13.32) MUTATED DEL PEAK 49(22Q13.32) WILD-TYPE
  CLUS_1                            38                             140
  CLUS_2                            30                             159
  CLUS_3                            59                              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 49(22Q13.32) MUTATED       53     23     28     13
  DEL PEAK 49(22Q13.32) WILD-TYPE    131     64     96     67
D79V9, multiclass
        clus
vv       DEL PEAK 49(22Q13.32) MUTATED DEL PEAK 49(22Q13.32) WILD-TYPE
  CLUS_1                            53                             131
  CLUS_2                            23                              64
  CLUS_3                            28                              96
  CLUS_4                            13                              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 49(22Q13.32) MUTATED       11     37     59     10
  DEL PEAK 49(22Q13.32) WILD-TYPE     78     81    140     59
D79V10, multiclass
        clus
vv       DEL PEAK 49(22Q13.32) MUTATED DEL PEAK 49(22Q13.32) WILD-TYPE
  CLUS_1                            11                              78
  CLUS_2                            37                              81
  CLUS_3                            59                             140
  CLUS_4                            10                              59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 49(22Q13.32) MUTATED       13     32     14     25
  DEL PEAK 49(22Q13.32) WILD-TYPE     48     83     52     67
D79V11, multiclass
        clus
vv       DEL PEAK 49(22Q13.32) MUTATED DEL PEAK 49(22Q13.32) WILD-TYPE
  CLUS_1                            13                              48
  CLUS_2                            32                              83
  CLUS_3                            14                              52
  CLUS_4                            25                              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(22Q13.32) MUTATED        8     55     21
  DEL PEAK 49(22Q13.32) WILD-TYPE     29    133     88
D79V12, multiclass
        clus
vv       DEL PEAK 49(22Q13.32) MUTATED DEL PEAK 49(22Q13.32) WILD-TYPE
  CLUS_1                             8                              29
  CLUS_2                            55                             133
  CLUS_3                            21                              88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(80) Variable = DEL PEAK 50(XP22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 50(XP22.2) MUTATED       10     18      9      8
  DEL PEAK 50(XP22.2) WILD-TYPE     31     32     25     21
D80V1, multiclass
        clus
vv       DEL PEAK 50(XP22.2) MUTATED DEL PEAK 50(XP22.2) WILD-TYPE
  CLUS_1                          10                            31
  CLUS_2                          18                            32
  CLUS_3                           9                            25
  CLUS_4                           8                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 50(XP22.2) MUTATED       11     19     15
  DEL PEAK 50(XP22.2) WILD-TYPE     36     37     36
D80V2, multiclass
        clus
vv       DEL PEAK 50(XP22.2) MUTATED DEL PEAK 50(XP22.2) WILD-TYPE
  CLUS_1                          11                            36
  CLUS_2                          19                            37
  CLUS_3                          15                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 50(XP22.2) MUTATED       12     18      9     28     72     16
  DEL PEAK 50(XP22.2) WILD-TYPE     31     97     20     59     97     42
D80V3, multiclass
        clus
vv       DEL PEAK 50(XP22.2) MUTATED DEL PEAK 50(XP22.2) WILD-TYPE
  CLUS_1                          12                            31
  CLUS_2                          18                            97
  CLUS_3                           9                            20
  CLUS_4                          28                            59
  CLUS_5                          72                            97
  CLUS_6                          16                            42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 50(XP22.2) MUTATED       37     40     15     21
  DEL PEAK 50(XP22.2) WILD-TYPE     53     55     42    104
D80V4, multiclass
        clus
vv       DEL PEAK 50(XP22.2) MUTATED DEL PEAK 50(XP22.2) WILD-TYPE
  CLUS_1                          37                            53
  CLUS_2                          40                            55
  CLUS_3                          15                            42
  CLUS_4                          21                           104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 50(XP22.2) MUTATED       32     35     30     11
  DEL PEAK 50(XP22.2) WILD-TYPE     73     74     56     15
D80V5, multiclass
        clus
vv       DEL PEAK 50(XP22.2) MUTATED DEL PEAK 50(XP22.2) WILD-TYPE
  CLUS_1                          32                            73
  CLUS_2                          35                            74
  CLUS_3                          30                            56
  CLUS_4                          11                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 50(XP22.2) MUTATED       30     20     20     25      8      5
  DEL PEAK 50(XP22.2) WILD-TYPE     49     47     42     35     22     23
D80V6, multiclass
        clus
vv       DEL PEAK 50(XP22.2) MUTATED DEL PEAK 50(XP22.2) WILD-TYPE
  CLUS_1                          30                            49
  CLUS_2                          20                            47
  CLUS_3                          20                            42
  CLUS_4                          25                            35
  CLUS_5                           8                            22
  CLUS_6                           5                            23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 50(XP22.2) MUTATED       33     60     45     15
  DEL PEAK 50(XP22.2) WILD-TYPE     73     90    114     68
D80V7, multiclass
        clus
vv       DEL PEAK 50(XP22.2) MUTATED DEL PEAK 50(XP22.2) WILD-TYPE
  CLUS_1                          33                            73
  CLUS_2                          60                            90
  CLUS_3                          45                           114
  CLUS_4                          15                            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 50(XP22.2) MUTATED       49     73     31
  DEL PEAK 50(XP22.2) WILD-TYPE    129    116    100
D80V8, multiclass
        clus
vv       DEL PEAK 50(XP22.2) MUTATED DEL PEAK 50(XP22.2) WILD-TYPE
  CLUS_1                          49                           129
  CLUS_2                          73                           116
  CLUS_3                          31                           100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 50(XP22.2) MUTATED       55     35     28     30
  DEL PEAK 50(XP22.2) WILD-TYPE    129     52     96     50
D80V9, multiclass
        clus
vv       DEL PEAK 50(XP22.2) MUTATED DEL PEAK 50(XP22.2) WILD-TYPE
  CLUS_1                          55                           129
  CLUS_2                          35                            52
  CLUS_3                          28                            96
  CLUS_4                          30                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 50(XP22.2) MUTATED       35     34     64     15
  DEL PEAK 50(XP22.2) WILD-TYPE     54     84    135     54
D80V10, multiclass
        clus
vv       DEL PEAK 50(XP22.2) MUTATED DEL PEAK 50(XP22.2) WILD-TYPE
  CLUS_1                          35                            54
  CLUS_2                          34                            84
  CLUS_3                          64                           135
  CLUS_4                          15                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 50(XP22.2) MUTATED       14     45      9     36
  DEL PEAK 50(XP22.2) WILD-TYPE     47     70     57     56
D80V11, multiclass
        clus
vv       DEL PEAK 50(XP22.2) MUTATED DEL PEAK 50(XP22.2) WILD-TYPE
  CLUS_1                          14                            47
  CLUS_2                          45                            70
  CLUS_3                           9                            57
  CLUS_4                          36                            56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 50(XP22.2) MUTATED        8     72     24
  DEL PEAK 50(XP22.2) WILD-TYPE     29    116     85
D80V12, multiclass
        clus
vv       DEL PEAK 50(XP22.2) MUTATED DEL PEAK 50(XP22.2) WILD-TYPE
  CLUS_1                           8                            29
  CLUS_2                          72                           116
  CLUS_3                          24                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(81) Variable = DEL PEAK 51(XP21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 51(XP21.1) MUTATED       10     20      8      8
  DEL PEAK 51(XP21.1) WILD-TYPE     31     30     26     21
D81V1, multiclass
        clus
vv       DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE
  CLUS_1                          10                            31
  CLUS_2                          20                            30
  CLUS_3                           8                            26
  CLUS_4                           8                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 51(XP21.1) MUTATED       13     20     13
  DEL PEAK 51(XP21.1) WILD-TYPE     34     36     38
D81V2, multiclass
        clus
vv       DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE
  CLUS_1                          13                            34
  CLUS_2                          20                            36
  CLUS_3                          13                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 51(XP21.1) MUTATED       10     14     10     27     75     15
  DEL PEAK 51(XP21.1) WILD-TYPE     33    101     19     60     94     43
D81V3, multiclass
        clus
vv       DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE
  CLUS_1                          10                            33
  CLUS_2                          14                           101
  CLUS_3                          10                            19
  CLUS_4                          27                            60
  CLUS_5                          75                            94
  CLUS_6                          15                            43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 51(XP21.1) MUTATED       36     40     18     15
  DEL PEAK 51(XP21.1) WILD-TYPE     54     55     39    110
D81V4, multiclass
        clus
vv       DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE
  CLUS_1                          36                            54
  CLUS_2                          40                            55
  CLUS_3                          18                            39
  CLUS_4                          15                           110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 51(XP21.1) MUTATED       31     29     33     10
  DEL PEAK 51(XP21.1) WILD-TYPE     74     80     53     16
D81V5, multiclass
        clus
vv       DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE
  CLUS_1                          31                            74
  CLUS_2                          29                            80
  CLUS_3                          33                            53
  CLUS_4                          10                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 51(XP21.1) MUTATED       28     20     17     25      7      6
  DEL PEAK 51(XP21.1) WILD-TYPE     51     47     45     35     23     22
D81V6, multiclass
        clus
vv       DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE
  CLUS_1                          28                            51
  CLUS_2                          20                            47
  CLUS_3                          17                            45
  CLUS_4                          25                            35
  CLUS_5                           7                            23
  CLUS_6                           6                            22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 51(XP21.1) MUTATED       32     66     36     15
  DEL PEAK 51(XP21.1) WILD-TYPE     74     84    123     68
D81V7, multiclass
        clus
vv       DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE
  CLUS_1                          32                            74
  CLUS_2                          66                            84
  CLUS_3                          36                           123
  CLUS_4                          15                            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 51(XP21.1) MUTATED       47     75     27
  DEL PEAK 51(XP21.1) WILD-TYPE    131    114    104
D81V8, multiclass
        clus
vv       DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE
  CLUS_1                          47                           131
  CLUS_2                          75                           114
  CLUS_3                          27                           104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 51(XP21.1) MUTATED       61     31     22     32
  DEL PEAK 51(XP21.1) WILD-TYPE    123     56    102     48
D81V9, multiclass
        clus
vv       DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE
  CLUS_1                          61                           123
  CLUS_2                          31                            56
  CLUS_3                          22                           102
  CLUS_4                          32                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 51(XP21.1) MUTATED       38     40     58     10
  DEL PEAK 51(XP21.1) WILD-TYPE     51     78    141     59
D81V10, multiclass
        clus
vv       DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE
  CLUS_1                          38                            51
  CLUS_2                          40                            78
  CLUS_3                          58                           141
  CLUS_4                          10                            59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 51(XP21.1) MUTATED       11     46     10     32
  DEL PEAK 51(XP21.1) WILD-TYPE     50     69     56     60
D81V11, multiclass
        clus
vv       DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE
  CLUS_1                          11                            50
  CLUS_2                          46                            69
  CLUS_3                          10                            56
  CLUS_4                          32                            60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 51(XP21.1) MUTATED        6     71     22
  DEL PEAK 51(XP21.1) WILD-TYPE     31    117     87
D81V12, multiclass
        clus
vv       DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE
  CLUS_1                           6                            31
  CLUS_2                          71                           117
  CLUS_3                          22                            87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(82) Variable = DEL PEAK 52(XP11.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 52(XP11.3) MUTATED        8     20      7     11
  DEL PEAK 52(XP11.3) WILD-TYPE     33     30     27     18
D82V1, multiclass
        clus
vv       DEL PEAK 52(XP11.3) MUTATED DEL PEAK 52(XP11.3) WILD-TYPE
  CLUS_1                           8                            33
  CLUS_2                          20                            30
  CLUS_3                           7                            27
  CLUS_4                          11                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 52(XP11.3) MUTATED       14     20     12
  DEL PEAK 52(XP11.3) WILD-TYPE     33     36     39
D82V2, multiclass
        clus
vv       DEL PEAK 52(XP11.3) MUTATED DEL PEAK 52(XP11.3) WILD-TYPE
  CLUS_1                          14                            33
  CLUS_2                          20                            36
  CLUS_3                          12                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 52(XP11.3) MUTATED       11     13     10     26     77     12
  DEL PEAK 52(XP11.3) WILD-TYPE     32    102     19     61     92     46
D82V3, multiclass
        clus
vv       DEL PEAK 52(XP11.3) MUTATED DEL PEAK 52(XP11.3) WILD-TYPE
  CLUS_1                          11                            32
  CLUS_2                          13                           102
  CLUS_3                          10                            19
  CLUS_4                          26                            61
  CLUS_5                          77                            92
  CLUS_6                          12                            46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 52(XP11.3) MUTATED       34     41     21     12
  DEL PEAK 52(XP11.3) WILD-TYPE     56     54     36    113
D82V4, multiclass
        clus
vv       DEL PEAK 52(XP11.3) MUTATED DEL PEAK 52(XP11.3) WILD-TYPE
  CLUS_1                          34                            56
  CLUS_2                          41                            54
  CLUS_3                          21                            36
  CLUS_4                          12                           113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 52(XP11.3) MUTATED       28     25     37     10
  DEL PEAK 52(XP11.3) WILD-TYPE     77     84     49     16
D82V5, multiclass
        clus
vv       DEL PEAK 52(XP11.3) MUTATED DEL PEAK 52(XP11.3) WILD-TYPE
  CLUS_1                          28                            77
  CLUS_2                          25                            84
  CLUS_3                          37                            49
  CLUS_4                          10                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 52(XP11.3) MUTATED       29     24     15     22      5      5
  DEL PEAK 52(XP11.3) WILD-TYPE     50     43     47     38     25     23
D82V6, multiclass
        clus
vv       DEL PEAK 52(XP11.3) MUTATED DEL PEAK 52(XP11.3) WILD-TYPE
  CLUS_1                          29                            50
  CLUS_2                          24                            43
  CLUS_3                          15                            47
  CLUS_4                          22                            38
  CLUS_5                           5                            25
  CLUS_6                           5                            23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 52(XP11.3) MUTATED       30     65     40     13
  DEL PEAK 52(XP11.3) WILD-TYPE     76     85    119     70
D82V7, multiclass
        clus
vv       DEL PEAK 52(XP11.3) MUTATED DEL PEAK 52(XP11.3) WILD-TYPE
  CLUS_1                          30                            76
  CLUS_2                          65                            85
  CLUS_3                          40                           119
  CLUS_4                          13                            70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 52(XP11.3) MUTATED       47     73     28
  DEL PEAK 52(XP11.3) WILD-TYPE    131    116    103
D82V8, multiclass
        clus
vv       DEL PEAK 52(XP11.3) MUTATED DEL PEAK 52(XP11.3) WILD-TYPE
  CLUS_1                          47                           131
  CLUS_2                          73                           116
  CLUS_3                          28                           103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 52(XP11.3) MUTATED       61     28     20     34
  DEL PEAK 52(XP11.3) WILD-TYPE    123     59    104     46
D82V9, multiclass
        clus
vv       DEL PEAK 52(XP11.3) MUTATED DEL PEAK 52(XP11.3) WILD-TYPE
  CLUS_1                          61                           123
  CLUS_2                          28                            59
  CLUS_3                          20                           104
  CLUS_4                          34                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 52(XP11.3) MUTATED       38     38     58      9
  DEL PEAK 52(XP11.3) WILD-TYPE     51     80    141     60
D82V10, multiclass
        clus
vv       DEL PEAK 52(XP11.3) MUTATED DEL PEAK 52(XP11.3) WILD-TYPE
  CLUS_1                          38                            51
  CLUS_2                          38                            80
  CLUS_3                          58                           141
  CLUS_4                           9                            60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 52(XP11.3) MUTATED       12     43      9     33
  DEL PEAK 52(XP11.3) WILD-TYPE     49     72     57     59
D82V11, multiclass
        clus
vv       DEL PEAK 52(XP11.3) MUTATED DEL PEAK 52(XP11.3) WILD-TYPE
  CLUS_1                          12                            49
  CLUS_2                          43                            72
  CLUS_3                           9                            57
  CLUS_4                          33                            59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 52(XP11.3) MUTATED        7     70     20
  DEL PEAK 52(XP11.3) WILD-TYPE     30    118     89
D82V12, multiclass
        clus
vv       DEL PEAK 52(XP11.3) MUTATED DEL PEAK 52(XP11.3) WILD-TYPE
  CLUS_1                           7                            30
  CLUS_2                          70                           118
  CLUS_3                          20                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(83) Variable = DEL PEAK 53(XQ22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 53(XQ22.3) MUTATED       15      7      4     11
  DEL PEAK 53(XQ22.3) WILD-TYPE     26     43     30     18
D83V1, multiclass
        clus
vv       DEL PEAK 53(XQ22.3) MUTATED DEL PEAK 53(XQ22.3) WILD-TYPE
  CLUS_1                          15                            26
  CLUS_2                           7                            43
  CLUS_3                           4                            30
  CLUS_4                          11                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 53(XQ22.3) MUTATED       18      7     12
  DEL PEAK 53(XQ22.3) WILD-TYPE     29     49     39
D83V2, multiclass
        clus
vv       DEL PEAK 53(XQ22.3) MUTATED DEL PEAK 53(XQ22.3) WILD-TYPE
  CLUS_1                          18                            29
  CLUS_2                           7                            49
  CLUS_3                          12                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 53(XQ22.3) MUTATED       14      5      5     39     39     12
  DEL PEAK 53(XQ22.3) WILD-TYPE     29    110     24     48    130     46
D83V3, multiclass
        clus
vv       DEL PEAK 53(XQ22.3) MUTATED DEL PEAK 53(XQ22.3) WILD-TYPE
  CLUS_1                          14                            29
  CLUS_2                           5                           110
  CLUS_3                           5                            24
  CLUS_4                          39                            48
  CLUS_5                          39                           130
  CLUS_6                          12                            46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 53(XQ22.3) MUTATED       34     21     19      5
  DEL PEAK 53(XQ22.3) WILD-TYPE     56     74     38    120
D83V4, multiclass
        clus
vv       DEL PEAK 53(XQ22.3) MUTATED DEL PEAK 53(XQ22.3) WILD-TYPE
  CLUS_1                          34                            56
  CLUS_2                          21                            74
  CLUS_3                          19                            38
  CLUS_4                           5                           120
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 53(XQ22.3) MUTATED       24     22     22      7
  DEL PEAK 53(XQ22.3) WILD-TYPE     81     87     64     19
D83V5, multiclass
        clus
vv       DEL PEAK 53(XQ22.3) MUTATED DEL PEAK 53(XQ22.3) WILD-TYPE
  CLUS_1                          24                            81
  CLUS_2                          22                            87
  CLUS_3                          22                            64
  CLUS_4                           7                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 53(XQ22.3) MUTATED       17     17     13     18      4      6
  DEL PEAK 53(XQ22.3) WILD-TYPE     62     50     49     42     26     22
D83V6, multiclass
        clus
vv       DEL PEAK 53(XQ22.3) MUTATED DEL PEAK 53(XQ22.3) WILD-TYPE
  CLUS_1                          17                            62
  CLUS_2                          17                            50
  CLUS_3                          13                            49
  CLUS_4                          18                            42
  CLUS_5                           4                            26
  CLUS_6                           6                            22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 53(XQ22.3) MUTATED       33     30     42      8
  DEL PEAK 53(XQ22.3) WILD-TYPE     73    120    117     75
D83V7, multiclass
        clus
vv       DEL PEAK 53(XQ22.3) MUTATED DEL PEAK 53(XQ22.3) WILD-TYPE
  CLUS_1                          33                            73
  CLUS_2                          30                           120
  CLUS_3                          42                           117
  CLUS_4                           8                            75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 53(XQ22.3) MUTATED       47     38     28
  DEL PEAK 53(XQ22.3) WILD-TYPE    131    151    103
D83V8, multiclass
        clus
vv       DEL PEAK 53(XQ22.3) MUTATED DEL PEAK 53(XQ22.3) WILD-TYPE
  CLUS_1                          47                           131
  CLUS_2                          38                           151
  CLUS_3                          28                           103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 53(XQ22.3) MUTATED       58     25     10     17
  DEL PEAK 53(XQ22.3) WILD-TYPE    126     62    114     63
D83V9, multiclass
        clus
vv       DEL PEAK 53(XQ22.3) MUTATED DEL PEAK 53(XQ22.3) WILD-TYPE
  CLUS_1                          58                           126
  CLUS_2                          25                            62
  CLUS_3                          10                           114
  CLUS_4                          17                            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 53(XQ22.3) MUTATED       20     33     54      3
  DEL PEAK 53(XQ22.3) WILD-TYPE     69     85    145     66
D83V10, multiclass
        clus
vv       DEL PEAK 53(XQ22.3) MUTATED DEL PEAK 53(XQ22.3) WILD-TYPE
  CLUS_1                          20                            69
  CLUS_2                          33                            85
  CLUS_3                          54                           145
  CLUS_4                           3                            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 53(XQ22.3) MUTATED       13     33      3     24
  DEL PEAK 53(XQ22.3) WILD-TYPE     48     82     63     68
D83V11, multiclass
        clus
vv       DEL PEAK 53(XQ22.3) MUTATED DEL PEAK 53(XQ22.3) WILD-TYPE
  CLUS_1                          13                            48
  CLUS_2                          33                            82
  CLUS_3                           3                            63
  CLUS_4                          24                            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 53(XQ22.3) MUTATED       10     49     14
  DEL PEAK 53(XQ22.3) WILD-TYPE     27    139     95
D83V12, multiclass
        clus
vv       DEL PEAK 53(XQ22.3) MUTATED DEL PEAK 53(XQ22.3) WILD-TYPE
  CLUS_1                          10                            27
  CLUS_2                          49                           139
  CLUS_3                          14                            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
