[1] "ofn"        "-oTPAAD-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/PAAD-TP/22541963/PAAD-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PAAD-TP/22533736/transformed.cor.cli.txt"

nPatients in clinical file=185, in cluster file=184, common to both=184
[1]  56 184
[1] "AMP PEAK  1(1P34.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                           13                           171 
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                           13                           171 
[1] "AMP PEAK  2(1P12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE 
                         27                         157 
  AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE 
                         27                         157 
[1] "AMP PEAK  3(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE 
                           62                           122 
  AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE 
                           62                           122 
[1] "AMP PEAK  4(2Q36.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(2Q36.2) MUTATED AMP PEAK  4(2Q36.2) WILD-TYPE 
                           26                           158 
  AMP PEAK  4(2Q36.2) MUTATED AMP PEAK  4(2Q36.2) WILD-TYPE 
                           26                           158 
[1] "AMP PEAK  5(3P12.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(3P12.2) MUTATED AMP PEAK  5(3P12.2) WILD-TYPE 
                           12                           172 
  AMP PEAK  5(3P12.2) MUTATED AMP PEAK  5(3P12.2) WILD-TYPE 
                           12                           172 
[1] "AMP PEAK  6(3Q26.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE 
                           32                           152 
  AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE 
                           32                           152 
[1] "AMP PEAK  7(4P16.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE 
                           15                           169 
  AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE 
                           15                           169 
[1] "AMP PEAK  8(6P21.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(6P21.31) MUTATED AMP PEAK  8(6P21.31) WILD-TYPE 
                            12                            172 
  AMP PEAK  8(6P21.31) MUTATED AMP PEAK  8(6P21.31) WILD-TYPE 
                            12                            172 
[1] "AMP PEAK  9(7Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(7Q22.1) MUTATED AMP PEAK  9(7Q22.1) WILD-TYPE 
                           56                           128 
  AMP PEAK  9(7Q22.1) MUTATED AMP PEAK  9(7Q22.1) WILD-TYPE 
                           56                           128 
[1] "AMP PEAK 10(8P11.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(8P11.22) MUTATED AMP PEAK 10(8P11.22) WILD-TYPE 
                            34                            150 
  AMP PEAK 10(8P11.22) MUTATED AMP PEAK 10(8P11.22) WILD-TYPE 
                            34                            150 
[1] "AMP PEAK 11(8P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE 
                            34                            150 
  AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE 
                            34                            150 
[1] "AMP PEAK 12(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                            74                            110 
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                            74                            110 
[1] "AMP PEAK 13(9P13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(9P13.3) MUTATED AMP PEAK 13(9P13.3) WILD-TYPE 
                           24                           160 
  AMP PEAK 13(9P13.3) MUTATED AMP PEAK 13(9P13.3) WILD-TYPE 
                           24                           160 
[1] "AMP PEAK 14(12P13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(12P13.33) MUTATED AMP PEAK 14(12P13.33) WILD-TYPE 
                             39                             145 
  AMP PEAK 14(12P13.33) MUTATED AMP PEAK 14(12P13.33) WILD-TYPE 
                             39                             145 
[1] "AMP PEAK 15(12P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(12P11.21) MUTATED AMP PEAK 15(12P11.21) WILD-TYPE 
                             43                             141 
  AMP PEAK 15(12P11.21) MUTATED AMP PEAK 15(12P11.21) WILD-TYPE 
                             43                             141 
[1] "AMP PEAK 16(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE 
                          29                          155 
  AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE 
                          29                          155 
[1] "AMP PEAK 17(15Q26.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE 
                            22                            162 
  AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE 
                            22                            162 
[1] "AMP PEAK 18(17P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE 
                            15                            169 
  AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE 
                            15                            169 
[1] "AMP PEAK 19(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE 
                          31                          153 
  AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE 
                          31                          153 
[1] "AMP PEAK 20(18Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(18Q11.2) MUTATED AMP PEAK 20(18Q11.2) WILD-TYPE 
                            56                            128 
  AMP PEAK 20(18Q11.2) MUTATED AMP PEAK 20(18Q11.2) WILD-TYPE 
                            56                            128 
[1] "AMP PEAK 21(19Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(19Q13.2) MUTATED AMP PEAK 21(19Q13.2) WILD-TYPE 
                            47                            137 
  AMP PEAK 21(19Q13.2) MUTATED AMP PEAK 21(19Q13.2) WILD-TYPE 
                            47                            137 
[1] "AMP PEAK 22(20P11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(20P11.23) MUTATED AMP PEAK 22(20P11.23) WILD-TYPE 
                             38                             146 
  AMP PEAK 22(20P11.23) MUTATED AMP PEAK 22(20P11.23) WILD-TYPE 
                             38                             146 
[1] "AMP PEAK 23(XQ28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(XQ28) MUTATED AMP PEAK 23(XQ28) WILD-TYPE 
                         20                         164 
  AMP PEAK 23(XQ28) MUTATED AMP PEAK 23(XQ28) WILD-TYPE 
                         20                         164 
[1] "DEL PEAK  1(1P36.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                            68                            116 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                            68                            116 
[1] "DEL PEAK  2(2Q14.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(2Q14.3) MUTATED DEL PEAK  2(2Q14.3) WILD-TYPE 
                            9                           175 
  DEL PEAK  2(2Q14.3) MUTATED DEL PEAK  2(2Q14.3) WILD-TYPE 
                            9                           175 
[1] "DEL PEAK  3(3P21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(3P21.31) MUTATED DEL PEAK  3(3P21.31) WILD-TYPE 
                            51                            133 
  DEL PEAK  3(3P21.31) MUTATED DEL PEAK  3(3P21.31) WILD-TYPE 
                            51                            133 
[1] "DEL PEAK  4(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(4Q22.1) MUTATED DEL PEAK  4(4Q22.1) WILD-TYPE 
                           27                           157 
  DEL PEAK  4(4Q22.1) MUTATED DEL PEAK  4(4Q22.1) WILD-TYPE 
                           27                           157 
[1] "DEL PEAK  5(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE 
                           35                           149 
  DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE 
                           35                           149 
[1] "DEL PEAK  6(5Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(5Q14.2) MUTATED DEL PEAK  6(5Q14.2) WILD-TYPE 
                           35                           149 
  DEL PEAK  6(5Q14.2) MUTATED DEL PEAK  6(5Q14.2) WILD-TYPE 
                           35                           149 
[1] "DEL PEAK  7(6P25.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(6P25.2) MUTATED DEL PEAK  7(6P25.2) WILD-TYPE 
                           74                           110 
  DEL PEAK  7(6P25.2) MUTATED DEL PEAK  7(6P25.2) WILD-TYPE 
                           74                           110 
[1] "DEL PEAK  8(6P22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(6P22.2) MUTATED DEL PEAK  8(6P22.2) WILD-TYPE 
                           70                           114 
  DEL PEAK  8(6P22.2) MUTATED DEL PEAK  8(6P22.2) WILD-TYPE 
                           70                           114 
[1] "DEL PEAK  9(6Q25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(6Q25.3) MUTATED DEL PEAK  9(6Q25.3) WILD-TYPE 
                           91                            93 
  DEL PEAK  9(6Q25.3) MUTATED DEL PEAK  9(6Q25.3) WILD-TYPE 
                           91                            93 
[1] "DEL PEAK 10(7Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(7Q31.1) MUTATED DEL PEAK 10(7Q31.1) WILD-TYPE 
                           15                           169 
  DEL PEAK 10(7Q31.1) MUTATED DEL PEAK 10(7Q31.1) WILD-TYPE 
                           15                           169 
[1] "DEL PEAK 11(7Q36.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(7Q36.1) MUTATED DEL PEAK 11(7Q36.1) WILD-TYPE 
                           15                           169 
  DEL PEAK 11(7Q36.1) MUTATED DEL PEAK 11(7Q36.1) WILD-TYPE 
                           15                           169 
[1] "DEL PEAK 12(8P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(8P21.3) MUTATED DEL PEAK 12(8P21.3) WILD-TYPE 
                           62                           122 
  DEL PEAK 12(8P21.3) MUTATED DEL PEAK 12(8P21.3) WILD-TYPE 
                           62                           122 
[1] "DEL PEAK 13(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE 
                          116                            68 
  DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE 
                          116                            68 
[1] "DEL PEAK 14(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(10P15.3) MUTATED DEL PEAK 14(10P15.3) WILD-TYPE 
                            41                            143 
  DEL PEAK 14(10P15.3) MUTATED DEL PEAK 14(10P15.3) WILD-TYPE 
                            41                            143 
[1] "DEL PEAK 15(10Q23.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(10Q23.33) MUTATED DEL PEAK 15(10Q23.33) WILD-TYPE 
                             35                             149 
  DEL PEAK 15(10Q23.33) MUTATED DEL PEAK 15(10Q23.33) WILD-TYPE 
                             35                             149 
[1] "DEL PEAK 16(11P15.4) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(11P15.4) MUTATED DEL PEAK 16(11P15.4) WILD-TYPE 
                            29                            155 
  DEL PEAK 16(11P15.4) MUTATED DEL PEAK 16(11P15.4) WILD-TYPE 
                            29                            155 
[1] "DEL PEAK 17(12P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(12P13.1) MUTATED DEL PEAK 17(12P13.1) WILD-TYPE 
                            29                            155 
  DEL PEAK 17(12P13.1) MUTATED DEL PEAK 17(12P13.1) WILD-TYPE 
                            29                            155 
[1] "DEL PEAK 18(12Q24.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(12Q24.33) MUTATED DEL PEAK 18(12Q24.33) WILD-TYPE 
                             43                             141 
  DEL PEAK 18(12Q24.33) MUTATED DEL PEAK 18(12Q24.33) WILD-TYPE 
                             43                             141 
[1] "DEL PEAK 19(14Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(14Q11.2) MUTATED DEL PEAK 19(14Q11.2) WILD-TYPE 
                            20                            164 
  DEL PEAK 19(14Q11.2) MUTATED DEL PEAK 19(14Q11.2) WILD-TYPE 
                            20                            164 
[1] "DEL PEAK 20(15Q15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(15Q15.1) MUTATED DEL PEAK 20(15Q15.1) WILD-TYPE 
                            36                            148 
  DEL PEAK 20(15Q15.1) MUTATED DEL PEAK 20(15Q15.1) WILD-TYPE 
                            36                            148 
[1] "DEL PEAK 21(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE 
                            19                            165 
  DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE 
                            19                            165 
[1] "DEL PEAK 22(17P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE 
                          89                           95 
  DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE 
                          89                           95 
[1] "DEL PEAK 23(17Q22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(17Q22) MUTATED DEL PEAK 23(17Q22) WILD-TYPE 
                          49                          135 
  DEL PEAK 23(17Q22) MUTATED DEL PEAK 23(17Q22) WILD-TYPE 
                          49                          135 
[1] "DEL PEAK 24(18P11.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(18P11.31) MUTATED DEL PEAK 24(18P11.31) WILD-TYPE 
                             54                             130 
  DEL PEAK 24(18P11.31) MUTATED DEL PEAK 24(18P11.31) WILD-TYPE 
                             54                             130 
[1] "DEL PEAK 25(18Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(18Q21.2) MUTATED DEL PEAK 25(18Q21.2) WILD-TYPE 
                           126                             58 
  DEL PEAK 25(18Q21.2) MUTATED DEL PEAK 25(18Q21.2) WILD-TYPE 
                           126                             58 
[1] "DEL PEAK 26(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(19P13.3) MUTATED DEL PEAK 26(19P13.3) WILD-TYPE 
                            36                            148 
  DEL PEAK 26(19P13.3) MUTATED DEL PEAK 26(19P13.3) WILD-TYPE 
                            36                            148 
[1] "DEL PEAK 27(19P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(19P13.2) MUTATED DEL PEAK 27(19P13.2) WILD-TYPE 
                            28                            156 
  DEL PEAK 27(19P13.2) MUTATED DEL PEAK 27(19P13.2) WILD-TYPE 
                            28                            156 
[1] "DEL PEAK 28(19Q13.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(19Q13.33) MUTATED DEL PEAK 28(19Q13.33) WILD-TYPE 
                             22                             162 
  DEL PEAK 28(19Q13.33) MUTATED DEL PEAK 28(19Q13.33) WILD-TYPE 
                             22                             162 
[1] "DEL PEAK 29(21Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(21Q11.2) MUTATED DEL PEAK 29(21Q11.2) WILD-TYPE 
                            62                            122 
  DEL PEAK 29(21Q11.2) MUTATED DEL PEAK 29(21Q11.2) WILD-TYPE 
                            62                            122 
[1] "DEL PEAK 30(22Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(22Q13.31) MUTATED DEL PEAK 30(22Q13.31) WILD-TYPE 
                             60                             124 
  DEL PEAK 30(22Q13.31) MUTATED DEL PEAK 30(22Q13.31) WILD-TYPE 
                             60                             124 
[1] "DEL PEAK 31(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(22Q13.32) MUTATED DEL PEAK 31(22Q13.32) WILD-TYPE 
                             61                             123 
  DEL PEAK 31(22Q13.32) MUTATED DEL PEAK 31(22Q13.32) WILD-TYPE 
                             61                             123 
[1] "DEL PEAK 32(XP21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(XP21.1) MUTATED DEL PEAK 32(XP21.1) WILD-TYPE 
                           28                           156 
  DEL PEAK 32(XP21.1) MUTATED DEL PEAK 32(XP21.1) WILD-TYPE 
                           28                           156 
[1] "DEL PEAK 33(XQ11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(XQ11.2) MUTATED DEL PEAK 33(XQ11.2) WILD-TYPE 
                           23                           161 
  DEL PEAK 33(XQ11.2) MUTATED DEL PEAK 33(XQ11.2) WILD-TYPE 
                           23                           161 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 184 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 184 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P34.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P34.2) MUTATED        2      8      1      2
  AMP PEAK  1(1P34.2) WILD-TYPE     24     66     45     36
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                           2                            24
  CLUS_2                           8                            66
  CLUS_3                           1                            45
  CLUS_4                           2                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P34.2) MUTATED        2      3      5      3
  AMP PEAK  1(1P34.2) WILD-TYPE     43     46     47     34
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                           2                            43
  CLUS_2                           3                            46
  CLUS_3                           5                            47
  CLUS_4                           3                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P34.2) MUTATED        2      3      0      2      0
  AMP PEAK  1(1P34.2) WILD-TYPE     37     22     20     13     23
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                           2                            37
  CLUS_2                           3                            22
  CLUS_3                           0                            20
  CLUS_4                           2                            13
  CLUS_5                           0                            23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P34.2) MUTATED        1      3      0      3      0
  AMP PEAK  1(1P34.2) WILD-TYPE     46     22     16     13     18
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                           1                            46
  CLUS_2                           3                            22
  CLUS_3                           0                            16
  CLUS_4                           3                            13
  CLUS_5                           0                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P34.2) MUTATED        4      1      3      2      2
  AMP PEAK  1(1P34.2) WILD-TYPE     35     25     40     37     28
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                           4                            35
  CLUS_2                           1                            25
  CLUS_3                           3                            40
  CLUS_4                           2                            37
  CLUS_5                           2                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.2) MUTATED        3      8      1
  AMP PEAK  1(1P34.2) WILD-TYPE     71     67     27
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                           3                            71
  CLUS_2                           8                            67
  CLUS_3                           1                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P34.2) MUTATED        2      2      2      4      2
  AMP PEAK  1(1P34.2) WILD-TYPE     50     45     23     27     20
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                           2                            50
  CLUS_2                           2                            45
  CLUS_3                           2                            23
  CLUS_4                           4                            27
  CLUS_5                           2                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.2) MUTATED        8      2      2
  AMP PEAK  1(1P34.2) WILD-TYPE     94     40     31
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                           8                            94
  CLUS_2                           2                            40
  CLUS_3                           2                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P34.2) MUTATED        2      1      3      2      2      0
  AMP PEAK  1(1P34.2) WILD-TYPE     25     10     24     11     49     27
                               vv
clus                            CLUS_7
  AMP PEAK  1(1P34.2) MUTATED        2
  AMP PEAK  1(1P34.2) WILD-TYPE     15
D1V9, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                           2                            25
  CLUS_2                           1                            10
  CLUS_3                           3                            24
  CLUS_4                           2                            11
  CLUS_5                           2                            49
  CLUS_6                           0                            27
  CLUS_7                           2                            15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P34.2) MUTATED        1      3      3      4      1      0
  AMP PEAK  1(1P34.2) WILD-TYPE     22     41     16     49     25      8
D1V10, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                           1                            22
  CLUS_2                           3                            41
  CLUS_3                           3                            16
  CLUS_4                           4                            49
  CLUS_5                           1                            25
  CLUS_6                           0                             8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1P12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1P12) MUTATED        5     13      2      7
  AMP PEAK  2(1P12) WILD-TYPE     21     61     44     31
D2V1, multiclass
        clus
vv       AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE
  CLUS_1                         5                          21
  CLUS_2                        13                          61
  CLUS_3                         2                          44
  CLUS_4                         7                          31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1P12) MUTATED        8      6      8      5
  AMP PEAK  2(1P12) WILD-TYPE     37     43     44     32
D2V2, multiclass
        clus
vv       AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE
  CLUS_1                         8                          37
  CLUS_2                         6                          43
  CLUS_3                         8                          44
  CLUS_4                         5                          32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1P12) MUTATED        8      4      0      3      2
  AMP PEAK  2(1P12) WILD-TYPE     31     21     20     12     21
D2V3, multiclass
        clus
vv       AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE
  CLUS_1                         8                          31
  CLUS_2                         4                          21
  CLUS_3                         0                          20
  CLUS_4                         3                          12
  CLUS_5                         2                          21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1P12) MUTATED        8      4      0      4      1
  AMP PEAK  2(1P12) WILD-TYPE     39     21     16     12     17
D2V4, multiclass
        clus
vv       AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE
  CLUS_1                         8                          39
  CLUS_2                         4                          21
  CLUS_3                         0                          16
  CLUS_4                         4                          12
  CLUS_5                         1                          17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1P12) MUTATED        7      2      6      6      3
  AMP PEAK  2(1P12) WILD-TYPE     32     24     37     33     27
D2V5, multiclass
        clus
vv       AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE
  CLUS_1                         7                          32
  CLUS_2                         2                          24
  CLUS_3                         6                          37
  CLUS_4                         6                          33
  CLUS_5                         3                          27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P12) MUTATED        9     13      2
  AMP PEAK  2(1P12) WILD-TYPE     65     62     26
D2V6, multiclass
        clus
vv       AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE
  CLUS_1                         9                          65
  CLUS_2                        13                          62
  CLUS_3                         2                          26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1P12) MUTATED        8      5      3      5      3
  AMP PEAK  2(1P12) WILD-TYPE     44     42     22     26     19
D2V7, multiclass
        clus
vv       AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE
  CLUS_1                         8                          44
  CLUS_2                         5                          42
  CLUS_3                         3                          22
  CLUS_4                         5                          26
  CLUS_5                         3                          19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P12) MUTATED       14      8      2
  AMP PEAK  2(1P12) WILD-TYPE     88     34     31
D2V8, multiclass
        clus
vv       AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE
  CLUS_1                        14                          88
  CLUS_2                         8                          34
  CLUS_3                         2                          31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  2(1P12) MUTATED        7      1      5      2      8      0      1
  AMP PEAK  2(1P12) WILD-TYPE     20     10     22     11     43     27     16
D2V9, multiclass
        clus
vv       AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE
  CLUS_1                         7                          20
  CLUS_2                         1                          10
  CLUS_3                         5                          22
  CLUS_4                         2                          11
  CLUS_5                         8                          43
  CLUS_6                         0                          27
  CLUS_7                         1                          16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1P12) MUTATED        4      5      3     10      2      0
  AMP PEAK  2(1P12) WILD-TYPE     19     39     16     43     24      8
D2V10, multiclass
        clus
vv       AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE
  CLUS_1                         4                          19
  CLUS_2                         5                          39
  CLUS_3                         3                          16
  CLUS_4                        10                          43
  CLUS_5                         2                          24
  CLUS_6                         0                           8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(1Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q21.3) MUTATED        8     33      5     16
  AMP PEAK  3(1Q21.3) WILD-TYPE     18     41     41     22
D3V1, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                           8                            18
  CLUS_2                          33                            41
  CLUS_3                           5                            41
  CLUS_4                          16                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q21.3) MUTATED       27     10     19      6
  AMP PEAK  3(1Q21.3) WILD-TYPE     18     39     33     31
D3V2, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                          27                            18
  CLUS_2                          10                            39
  CLUS_3                          19                            33
  CLUS_4                           6                            31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q21.3) MUTATED       18      7      3      7      5
  AMP PEAK  3(1Q21.3) WILD-TYPE     21     18     17      8     18
D3V3, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                          18                            21
  CLUS_2                           7                            18
  CLUS_3                           3                            17
  CLUS_4                           7                             8
  CLUS_5                           5                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q21.3) MUTATED       18      9      3      8      2
  AMP PEAK  3(1Q21.3) WILD-TYPE     29     16     13      8     16
D3V4, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                          18                            29
  CLUS_2                           9                            16
  CLUS_3                           3                            13
  CLUS_4                           8                             8
  CLUS_5                           2                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q21.3) MUTATED       20      7     16     12      4
  AMP PEAK  3(1Q21.3) WILD-TYPE     19     19     27     27     26
D3V5, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                          20                            19
  CLUS_2                           7                            19
  CLUS_3                          16                            27
  CLUS_4                          12                            27
  CLUS_5                           4                            26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q21.3) MUTATED       22     33      4
  AMP PEAK  3(1Q21.3) WILD-TYPE     52     42     24
D3V6, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                          22                            52
  CLUS_2                          33                            42
  CLUS_3                           4                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q21.3) MUTATED       26      8      7     11      7
  AMP PEAK  3(1Q21.3) WILD-TYPE     26     39     18     20     15
D3V7, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                          26                            26
  CLUS_2                           8                            39
  CLUS_3                           7                            18
  CLUS_4                          11                            20
  CLUS_5                           7                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q21.3) MUTATED       42     12      5
  AMP PEAK  3(1Q21.3) WILD-TYPE     60     30     28
D3V8, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                          42                            60
  CLUS_2                          12                            30
  CLUS_3                           5                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q21.3) MUTATED        9      5      9      2     26      6
  AMP PEAK  3(1Q21.3) WILD-TYPE     18      6     18     11     25     21
                               vv
clus                            CLUS_7
  AMP PEAK  3(1Q21.3) MUTATED        1
  AMP PEAK  3(1Q21.3) WILD-TYPE     16
D3V9, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                           9                            18
  CLUS_2                           5                             6
  CLUS_3                           9                            18
  CLUS_4                           2                            11
  CLUS_5                          26                            25
  CLUS_6                           6                            21
  CLUS_7                           1                            16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q21.3) MUTATED        9     18      7     19      5      0
  AMP PEAK  3(1Q21.3) WILD-TYPE     14     26     12     34     21      8
D3V10, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                           9                            14
  CLUS_2                          18                            26
  CLUS_3                           7                            12
  CLUS_4                          19                            34
  CLUS_5                           5                            21
  CLUS_6                           0                             8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(2Q36.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2Q36.2) MUTATED        5     15      1      5
  AMP PEAK  4(2Q36.2) WILD-TYPE     21     59     45     33
D4V1, multiclass
        clus
vv       AMP PEAK  4(2Q36.2) MUTATED AMP PEAK  4(2Q36.2) WILD-TYPE
  CLUS_1                           5                            21
  CLUS_2                          15                            59
  CLUS_3                           1                            45
  CLUS_4                           5                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2Q36.2) MUTATED       10      2     13      0
  AMP PEAK  4(2Q36.2) WILD-TYPE     35     47     39     37
D4V2, multiclass
        clus
vv       AMP PEAK  4(2Q36.2) MUTATED AMP PEAK  4(2Q36.2) WILD-TYPE
  CLUS_1                          10                            35
  CLUS_2                           2                            47
  CLUS_3                          13                            39
  CLUS_4                           0                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(2Q36.2) MUTATED       12      2      1      1      4
  AMP PEAK  4(2Q36.2) WILD-TYPE     27     23     19     14     19
D4V3, multiclass
        clus
vv       AMP PEAK  4(2Q36.2) MUTATED AMP PEAK  4(2Q36.2) WILD-TYPE
  CLUS_1                          12                            27
  CLUS_2                           2                            23
  CLUS_3                           1                            19
  CLUS_4                           1                            14
  CLUS_5                           4                            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(2Q36.2) MUTATED       12      3      1      1      3
  AMP PEAK  4(2Q36.2) WILD-TYPE     35     22     15     15     15
D4V4, multiclass
        clus
vv       AMP PEAK  4(2Q36.2) MUTATED AMP PEAK  4(2Q36.2) WILD-TYPE
  CLUS_1                          12                            35
  CLUS_2                           3                            22
  CLUS_3                           1                            15
  CLUS_4                           1                            15
  CLUS_5                           3                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(2Q36.2) MUTATED        7      2     12      3      1
  AMP PEAK  4(2Q36.2) WILD-TYPE     32     24     31     36     29
D4V5, multiclass
        clus
vv       AMP PEAK  4(2Q36.2) MUTATED AMP PEAK  4(2Q36.2) WILD-TYPE
  CLUS_1                           7                            32
  CLUS_2                           2                            24
  CLUS_3                          12                            31
  CLUS_4                           3                            36
  CLUS_5                           1                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2Q36.2) MUTATED       10     15      0
  AMP PEAK  4(2Q36.2) WILD-TYPE     64     60     28
D4V6, multiclass
        clus
vv       AMP PEAK  4(2Q36.2) MUTATED AMP PEAK  4(2Q36.2) WILD-TYPE
  CLUS_1                          10                            64
  CLUS_2                          15                            60
  CLUS_3                           0                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(2Q36.2) MUTATED       11      5      2      5      2
  AMP PEAK  4(2Q36.2) WILD-TYPE     41     42     23     26     20
D4V7, multiclass
        clus
vv       AMP PEAK  4(2Q36.2) MUTATED AMP PEAK  4(2Q36.2) WILD-TYPE
  CLUS_1                          11                            41
  CLUS_2                           5                            42
  CLUS_3                           2                            23
  CLUS_4                           5                            26
  CLUS_5                           2                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2Q36.2) MUTATED       22      2      1
  AMP PEAK  4(2Q36.2) WILD-TYPE     80     40     32
D4V8, multiclass
        clus
vv       AMP PEAK  4(2Q36.2) MUTATED AMP PEAK  4(2Q36.2) WILD-TYPE
  CLUS_1                          22                            80
  CLUS_2                           2                            40
  CLUS_3                           1                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(2Q36.2) MUTATED        1      2      6      1     13      2
  AMP PEAK  4(2Q36.2) WILD-TYPE     26      9     21     12     38     25
                               vv
clus                            CLUS_7
  AMP PEAK  4(2Q36.2) MUTATED        0
  AMP PEAK  4(2Q36.2) WILD-TYPE     17
D4V9, multiclass
        clus
vv       AMP PEAK  4(2Q36.2) MUTATED AMP PEAK  4(2Q36.2) WILD-TYPE
  CLUS_1                           1                            26
  CLUS_2                           2                             9
  CLUS_3                           6                            21
  CLUS_4                           1                            12
  CLUS_5                          13                            38
  CLUS_6                           2                            25
  CLUS_7                           0                            17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(2Q36.2) MUTATED        6     11      3      4      1      0
  AMP PEAK  4(2Q36.2) WILD-TYPE     17     33     16     49     25      8
D4V10, multiclass
        clus
vv       AMP PEAK  4(2Q36.2) MUTATED AMP PEAK  4(2Q36.2) WILD-TYPE
  CLUS_1                           6                            17
  CLUS_2                          11                            33
  CLUS_3                           3                            16
  CLUS_4                           4                            49
  CLUS_5                           1                            25
  CLUS_6                           0                             8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(3P12.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(3P12.2) MUTATED        1      9      1      1
  AMP PEAK  5(3P12.2) WILD-TYPE     25     65     45     37
D5V1, multiclass
        clus
vv       AMP PEAK  5(3P12.2) MUTATED AMP PEAK  5(3P12.2) WILD-TYPE
  CLUS_1                           1                            25
  CLUS_2                           9                            65
  CLUS_3                           1                            45
  CLUS_4                           1                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(3P12.2) MUTATED        6      1      5      0
  AMP PEAK  5(3P12.2) WILD-TYPE     39     48     47     37
D5V2, multiclass
        clus
vv       AMP PEAK  5(3P12.2) MUTATED AMP PEAK  5(3P12.2) WILD-TYPE
  CLUS_1                           6                            39
  CLUS_2                           1                            48
  CLUS_3                           5                            47
  CLUS_4                           0                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(3P12.2) MUTATED        5      0      0      0      3
  AMP PEAK  5(3P12.2) WILD-TYPE     34     25     20     15     20
D5V3, multiclass
        clus
vv       AMP PEAK  5(3P12.2) MUTATED AMP PEAK  5(3P12.2) WILD-TYPE
  CLUS_1                           5                            34
  CLUS_2                           0                            25
  CLUS_3                           0                            20
  CLUS_4                           0                            15
  CLUS_5                           3                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(3P12.2) MUTATED        4      1      0      1      2
  AMP PEAK  5(3P12.2) WILD-TYPE     43     24     16     15     16
D5V4, multiclass
        clus
vv       AMP PEAK  5(3P12.2) MUTATED AMP PEAK  5(3P12.2) WILD-TYPE
  CLUS_1                           4                            43
  CLUS_2                           1                            24
  CLUS_3                           0                            16
  CLUS_4                           1                            15
  CLUS_5                           2                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(3P12.2) MUTATED        1      0      6      3      1
  AMP PEAK  5(3P12.2) WILD-TYPE     38     26     37     36     29
D5V5, multiclass
        clus
vv       AMP PEAK  5(3P12.2) MUTATED AMP PEAK  5(3P12.2) WILD-TYPE
  CLUS_1                           1                            38
  CLUS_2                           0                            26
  CLUS_3                           6                            37
  CLUS_4                           3                            36
  CLUS_5                           1                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3P12.2) MUTATED        4      5      2
  AMP PEAK  5(3P12.2) WILD-TYPE     70     70     26
D5V6, multiclass
        clus
vv       AMP PEAK  5(3P12.2) MUTATED AMP PEAK  5(3P12.2) WILD-TYPE
  CLUS_1                           4                            70
  CLUS_2                           5                            70
  CLUS_3                           2                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(3P12.2) MUTATED        2      3      1      4      1
  AMP PEAK  5(3P12.2) WILD-TYPE     50     44     24     27     21
D5V7, multiclass
        clus
vv       AMP PEAK  5(3P12.2) MUTATED AMP PEAK  5(3P12.2) WILD-TYPE
  CLUS_1                           2                            50
  CLUS_2                           3                            44
  CLUS_3                           1                            24
  CLUS_4                           4                            27
  CLUS_5                           1                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3P12.2) MUTATED        7      2      2
  AMP PEAK  5(3P12.2) WILD-TYPE     95     40     31
D5V8, multiclass
        clus
vv       AMP PEAK  5(3P12.2) MUTATED AMP PEAK  5(3P12.2) WILD-TYPE
  CLUS_1                           7                            95
  CLUS_2                           2                            40
  CLUS_3                           2                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(3P12.2) MUTATED        2      2      2      1      3      1
  AMP PEAK  5(3P12.2) WILD-TYPE     25      9     25     12     48     26
                               vv
clus                            CLUS_7
  AMP PEAK  5(3P12.2) MUTATED        0
  AMP PEAK  5(3P12.2) WILD-TYPE     17
D5V9, multiclass
        clus
vv       AMP PEAK  5(3P12.2) MUTATED AMP PEAK  5(3P12.2) WILD-TYPE
  CLUS_1                           2                            25
  CLUS_2                           2                             9
  CLUS_3                           2                            25
  CLUS_4                           1                            12
  CLUS_5                           3                            48
  CLUS_6                           1                            26
  CLUS_7                           0                            17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(3P12.2) MUTATED        1      4      1      3      2      0
  AMP PEAK  5(3P12.2) WILD-TYPE     22     40     18     50     24      8
D5V10, multiclass
        clus
vv       AMP PEAK  5(3P12.2) MUTATED AMP PEAK  5(3P12.2) WILD-TYPE
  CLUS_1                           1                            22
  CLUS_2                           4                            40
  CLUS_3                           1                            18
  CLUS_4                           3                            50
  CLUS_5                           2                            24
  CLUS_6                           0                             8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(3Q26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(3Q26.2) MUTATED        5     21      2      4
  AMP PEAK  6(3Q26.2) WILD-TYPE     21     53     44     34
D6V1, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                           5                            21
  CLUS_2                          21                            53
  CLUS_3                           2                            44
  CLUS_4                           4                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(3Q26.2) MUTATED       11      1     18      2
  AMP PEAK  6(3Q26.2) WILD-TYPE     34     48     34     35
D6V2, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                          11                            34
  CLUS_2                           1                            48
  CLUS_3                          18                            34
  CLUS_4                           2                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(3Q26.2) MUTATED        9      3      3      1      8
  AMP PEAK  6(3Q26.2) WILD-TYPE     30     22     17     14     15
D6V3, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                           9                            30
  CLUS_2                           3                            22
  CLUS_3                           3                            17
  CLUS_4                           1                            14
  CLUS_5                           8                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(3Q26.2) MUTATED        9      3      1      2      9
  AMP PEAK  6(3Q26.2) WILD-TYPE     38     22     15     14      9
D6V4, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                           9                            38
  CLUS_2                           3                            22
  CLUS_3                           1                            15
  CLUS_4                           2                            14
  CLUS_5                           9                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(3Q26.2) MUTATED        5      1     20      3      2
  AMP PEAK  6(3Q26.2) WILD-TYPE     34     25     23     36     28
D6V5, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                           5                            34
  CLUS_2                           1                            25
  CLUS_3                          20                            23
  CLUS_4                           3                            36
  CLUS_5                           2                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.2) MUTATED       10     19      2
  AMP PEAK  6(3Q26.2) WILD-TYPE     64     56     26
D6V6, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                          10                            64
  CLUS_2                          19                            56
  CLUS_3                           2                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(3Q26.2) MUTATED       12      8      2      6      3
  AMP PEAK  6(3Q26.2) WILD-TYPE     40     39     23     25     19
D6V7, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                          12                            40
  CLUS_2                           8                            39
  CLUS_3                           2                            23
  CLUS_4                           6                            25
  CLUS_5                           3                            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.2) MUTATED       25      3      3
  AMP PEAK  6(3Q26.2) WILD-TYPE     77     39     30
D6V8, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                          25                            77
  CLUS_2                           3                            39
  CLUS_3                           3                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(3Q26.2) MUTATED        3      4      5      1     12      5
  AMP PEAK  6(3Q26.2) WILD-TYPE     24      7     22     12     39     22
                               vv
clus                            CLUS_7
  AMP PEAK  6(3Q26.2) MUTATED        0
  AMP PEAK  6(3Q26.2) WILD-TYPE     17
D6V9, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                           3                            24
  CLUS_2                           4                             7
  CLUS_3                           5                            22
  CLUS_4                           1                            12
  CLUS_5                          12                            39
  CLUS_6                           5                            22
  CLUS_7                           0                            17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(3Q26.2) MUTATED        2     16      2      7      3      0
  AMP PEAK  6(3Q26.2) WILD-TYPE     21     28     17     46     23      8
D6V10, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                           2                            21
  CLUS_2                          16                            28
  CLUS_3                           2                            17
  CLUS_4                           7                            46
  CLUS_5                           3                            23
  CLUS_6                           0                             8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(4P16.3) MUTATED        2      6      1      6
  AMP PEAK  7(4P16.3) WILD-TYPE     24     68     45     32
D7V1, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                           2                            24
  CLUS_2                           6                            68
  CLUS_3                           1                            45
  CLUS_4                           6                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(4P16.3) MUTATED        2      4      6      3
  AMP PEAK  7(4P16.3) WILD-TYPE     43     45     46     34
D7V2, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                           2                            43
  CLUS_2                           4                            45
  CLUS_3                           6                            46
  CLUS_4                           3                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(4P16.3) MUTATED        3      0      3      1      0
  AMP PEAK  7(4P16.3) WILD-TYPE     36     25     17     14     23
D7V3, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                           3                            36
  CLUS_2                           0                            25
  CLUS_3                           3                            17
  CLUS_4                           1                            14
  CLUS_5                           0                            23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(4P16.3) MUTATED        2      0      0      3      2
  AMP PEAK  7(4P16.3) WILD-TYPE     45     25     16     13     16
D7V4, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                           2                            45
  CLUS_2                           0                            25
  CLUS_3                           0                            16
  CLUS_4                           3                            13
  CLUS_5                           2                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(4P16.3) MUTATED        3      5      3      0      4
  AMP PEAK  7(4P16.3) WILD-TYPE     36     21     40     39     26
D7V5, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                           3                            36
  CLUS_2                           5                            21
  CLUS_3                           3                            40
  CLUS_4                           0                            39
  CLUS_5                           4                            26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4P16.3) MUTATED        2      8      5
  AMP PEAK  7(4P16.3) WILD-TYPE     72     67     23
D7V6, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                           2                            72
  CLUS_2                           8                            67
  CLUS_3                           5                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(4P16.3) MUTATED        7      2      0      4      2
  AMP PEAK  7(4P16.3) WILD-TYPE     45     45     25     27     20
D7V7, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                           7                            45
  CLUS_2                           2                            45
  CLUS_3                           0                            25
  CLUS_4                           4                            27
  CLUS_5                           2                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4P16.3) MUTATED       10      0      5
  AMP PEAK  7(4P16.3) WILD-TYPE     92     42     28
D7V8, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          10                            92
  CLUS_2                           0                            42
  CLUS_3                           5                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(4P16.3) MUTATED        0      1      1      3      5      1
  AMP PEAK  7(4P16.3) WILD-TYPE     27     10     26     10     46     26
                               vv
clus                            CLUS_7
  AMP PEAK  7(4P16.3) MUTATED        4
  AMP PEAK  7(4P16.3) WILD-TYPE     13
D7V9, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                           0                            27
  CLUS_2                           1                            10
  CLUS_3                           1                            26
  CLUS_4                           3                            10
  CLUS_5                           5                            46
  CLUS_6                           1                            26
  CLUS_7                           4                            13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(4P16.3) MUTATED        1      5      3      1      1      4
  AMP PEAK  7(4P16.3) WILD-TYPE     22     39     16     52     25      4
D7V10, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                           1                            22
  CLUS_2                           5                            39
  CLUS_3                           3                            16
  CLUS_4                           1                            52
  CLUS_5                           1                            25
  CLUS_6                           4                             4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(6P21.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P21.31) MUTATED        0      9      2      1
  AMP PEAK  8(6P21.31) WILD-TYPE     26     65     44     37
D8V1, multiclass
        clus
vv       AMP PEAK  8(6P21.31) MUTATED AMP PEAK  8(6P21.31) WILD-TYPE
  CLUS_1                            0                             26
  CLUS_2                            9                             65
  CLUS_3                            2                             44
  CLUS_4                            1                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P21.31) MUTATED        3      4      5      0
  AMP PEAK  8(6P21.31) WILD-TYPE     42     45     47     37
D8V2, multiclass
        clus
vv       AMP PEAK  8(6P21.31) MUTATED AMP PEAK  8(6P21.31) WILD-TYPE
  CLUS_1                            3                             42
  CLUS_2                            4                             45
  CLUS_3                            5                             47
  CLUS_4                            0                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6P21.31) MUTATED        3      2      0      0      2
  AMP PEAK  8(6P21.31) WILD-TYPE     36     23     20     15     21
D8V3, multiclass
        clus
vv       AMP PEAK  8(6P21.31) MUTATED AMP PEAK  8(6P21.31) WILD-TYPE
  CLUS_1                            3                             36
  CLUS_2                            2                             23
  CLUS_3                            0                             20
  CLUS_4                            0                             15
  CLUS_5                            2                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6P21.31) MUTATED        2      2      0      1      2
  AMP PEAK  8(6P21.31) WILD-TYPE     45     23     16     15     16
D8V4, multiclass
        clus
vv       AMP PEAK  8(6P21.31) MUTATED AMP PEAK  8(6P21.31) WILD-TYPE
  CLUS_1                            2                             45
  CLUS_2                            2                             23
  CLUS_3                            0                             16
  CLUS_4                            1                             15
  CLUS_5                            2                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6P21.31) MUTATED        2      2      4      4      0
  AMP PEAK  8(6P21.31) WILD-TYPE     37     24     39     35     30
D8V5, multiclass
        clus
vv       AMP PEAK  8(6P21.31) MUTATED AMP PEAK  8(6P21.31) WILD-TYPE
  CLUS_1                            2                             37
  CLUS_2                            2                             24
  CLUS_3                            4                             39
  CLUS_4                            4                             35
  CLUS_5                            0                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P21.31) MUTATED        6      5      1
  AMP PEAK  8(6P21.31) WILD-TYPE     68     70     27
D8V6, multiclass
        clus
vv       AMP PEAK  8(6P21.31) MUTATED AMP PEAK  8(6P21.31) WILD-TYPE
  CLUS_1                            6                             68
  CLUS_2                            5                             70
  CLUS_3                            1                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6P21.31) MUTATED        3      1      2      6      0
  AMP PEAK  8(6P21.31) WILD-TYPE     49     46     23     25     22
D8V7, multiclass
        clus
vv       AMP PEAK  8(6P21.31) MUTATED AMP PEAK  8(6P21.31) WILD-TYPE
  CLUS_1                            3                             49
  CLUS_2                            1                             46
  CLUS_3                            2                             23
  CLUS_4                            6                             25
  CLUS_5                            0                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P21.31) MUTATED        8      3      1
  AMP PEAK  8(6P21.31) WILD-TYPE     94     39     32
D8V8, multiclass
        clus
vv       AMP PEAK  8(6P21.31) MUTATED AMP PEAK  8(6P21.31) WILD-TYPE
  CLUS_1                            8                             94
  CLUS_2                            3                             39
  CLUS_3                            1                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(6P21.31) MUTATED        3      0      2      0      5      0
  AMP PEAK  8(6P21.31) WILD-TYPE     24     11     25     13     46     27
                                vv
clus                             CLUS_7
  AMP PEAK  8(6P21.31) MUTATED        1
  AMP PEAK  8(6P21.31) WILD-TYPE     16
D8V9, multiclass
        clus
vv       AMP PEAK  8(6P21.31) MUTATED AMP PEAK  8(6P21.31) WILD-TYPE
  CLUS_1                            3                             24
  CLUS_2                            0                             11
  CLUS_3                            2                             25
  CLUS_4                            0                             13
  CLUS_5                            5                             46
  CLUS_6                            0                             27
  CLUS_7                            1                             16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(6P21.31) MUTATED        1      2      1      6      0      1
  AMP PEAK  8(6P21.31) WILD-TYPE     22     42     18     47     26      7
D8V10, multiclass
        clus
vv       AMP PEAK  8(6P21.31) MUTATED AMP PEAK  8(6P21.31) WILD-TYPE
  CLUS_1                            1                             22
  CLUS_2                            2                             42
  CLUS_3                            1                             18
  CLUS_4                            6                             47
  CLUS_5                            0                             26
  CLUS_6                            1                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(7Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(7Q22.1) MUTATED        6     30      3     17
  AMP PEAK  9(7Q22.1) WILD-TYPE     20     44     43     21
D9V1, multiclass
        clus
vv       AMP PEAK  9(7Q22.1) MUTATED AMP PEAK  9(7Q22.1) WILD-TYPE
  CLUS_1                           6                            20
  CLUS_2                          30                            44
  CLUS_3                           3                            43
  CLUS_4                          17                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(7Q22.1) MUTATED       15     11     23      6
  AMP PEAK  9(7Q22.1) WILD-TYPE     30     38     29     31
D9V2, multiclass
        clus
vv       AMP PEAK  9(7Q22.1) MUTATED AMP PEAK  9(7Q22.1) WILD-TYPE
  CLUS_1                          15                            30
  CLUS_2                          11                            38
  CLUS_3                          23                            29
  CLUS_4                           6                            31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(7Q22.1) MUTATED       14      8      1      2      9
  AMP PEAK  9(7Q22.1) WILD-TYPE     25     17     19     13     14
D9V3, multiclass
        clus
vv       AMP PEAK  9(7Q22.1) MUTATED AMP PEAK  9(7Q22.1) WILD-TYPE
  CLUS_1                          14                            25
  CLUS_2                           8                            17
  CLUS_3                           1                            19
  CLUS_4                           2                            13
  CLUS_5                           9                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(7Q22.1) MUTATED       14      7      2      5      6
  AMP PEAK  9(7Q22.1) WILD-TYPE     33     18     14     11     12
D9V4, multiclass
        clus
vv       AMP PEAK  9(7Q22.1) MUTATED AMP PEAK  9(7Q22.1) WILD-TYPE
  CLUS_1                          14                            33
  CLUS_2                           7                            18
  CLUS_3                           2                            14
  CLUS_4                           5                            11
  CLUS_5                           6                            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(7Q22.1) MUTATED       15     10     17      7      4
  AMP PEAK  9(7Q22.1) WILD-TYPE     24     16     26     32     26
D9V5, multiclass
        clus
vv       AMP PEAK  9(7Q22.1) MUTATED AMP PEAK  9(7Q22.1) WILD-TYPE
  CLUS_1                          15                            24
  CLUS_2                          10                            16
  CLUS_3                          17                            26
  CLUS_4                           7                            32
  CLUS_5                           4                            26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(7Q22.1) MUTATED       18     27      8
  AMP PEAK  9(7Q22.1) WILD-TYPE     56     48     20
D9V6, multiclass
        clus
vv       AMP PEAK  9(7Q22.1) MUTATED AMP PEAK  9(7Q22.1) WILD-TYPE
  CLUS_1                          18                            56
  CLUS_2                          27                            48
  CLUS_3                           8                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(7Q22.1) MUTATED       17     11      6     15      4
  AMP PEAK  9(7Q22.1) WILD-TYPE     35     36     19     16     18
D9V7, multiclass
        clus
vv       AMP PEAK  9(7Q22.1) MUTATED AMP PEAK  9(7Q22.1) WILD-TYPE
  CLUS_1                          17                            35
  CLUS_2                          11                            36
  CLUS_3                           6                            19
  CLUS_4                          15                            16
  CLUS_5                           4                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(7Q22.1) MUTATED       38      7      8
  AMP PEAK  9(7Q22.1) WILD-TYPE     64     35     25
D9V8, multiclass
        clus
vv       AMP PEAK  9(7Q22.1) MUTATED AMP PEAK  9(7Q22.1) WILD-TYPE
  CLUS_1                          38                            64
  CLUS_2                           7                            35
  CLUS_3                           8                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(7Q22.1) MUTATED        5      6      8      0     23      4
  AMP PEAK  9(7Q22.1) WILD-TYPE     22      5     19     13     28     23
                               vv
clus                            CLUS_7
  AMP PEAK  9(7Q22.1) MUTATED        6
  AMP PEAK  9(7Q22.1) WILD-TYPE     11
D9V9, multiclass
        clus
vv       AMP PEAK  9(7Q22.1) MUTATED AMP PEAK  9(7Q22.1) WILD-TYPE
  CLUS_1                           5                            22
  CLUS_2                           6                             5
  CLUS_3                           8                            19
  CLUS_4                           0                            13
  CLUS_5                          23                            28
  CLUS_6                           4                            23
  CLUS_7                           6                            11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(7Q22.1) MUTATED        7     18      7     11      3      6
  AMP PEAK  9(7Q22.1) WILD-TYPE     16     26     12     42     23      2
D9V10, multiclass
        clus
vv       AMP PEAK  9(7Q22.1) MUTATED AMP PEAK  9(7Q22.1) WILD-TYPE
  CLUS_1                           7                            16
  CLUS_2                          18                            26
  CLUS_3                           7                            12
  CLUS_4                          11                            42
  CLUS_5                           3                            23
  CLUS_6                           6                             2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(8P11.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(8P11.22) MUTATED        6     11      4     13
  AMP PEAK 10(8P11.22) WILD-TYPE     20     63     42     25
D10V1, multiclass
        clus
vv       AMP PEAK 10(8P11.22) MUTATED AMP PEAK 10(8P11.22) WILD-TYPE
  CLUS_1                            6                             20
  CLUS_2                           11                             63
  CLUS_3                            4                             42
  CLUS_4                           13                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(8P11.22) MUTATED       12      7     10      4
  AMP PEAK 10(8P11.22) WILD-TYPE     33     42     42     33
D10V2, multiclass
        clus
vv       AMP PEAK 10(8P11.22) MUTATED AMP PEAK 10(8P11.22) WILD-TYPE
  CLUS_1                           12                             33
  CLUS_2                            7                             42
  CLUS_3                           10                             42
  CLUS_4                            4                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(8P11.22) MUTATED        8      8      4      0      3
  AMP PEAK 10(8P11.22) WILD-TYPE     31     17     16     15     20
D10V3, multiclass
        clus
vv       AMP PEAK 10(8P11.22) MUTATED AMP PEAK 10(8P11.22) WILD-TYPE
  CLUS_1                            8                             31
  CLUS_2                            8                             17
  CLUS_3                            4                             16
  CLUS_4                            0                             15
  CLUS_5                            3                             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(8P11.22) MUTATED        9      8      2      1      3
  AMP PEAK 10(8P11.22) WILD-TYPE     38     17     14     15     15
D10V4, multiclass
        clus
vv       AMP PEAK 10(8P11.22) MUTATED AMP PEAK 10(8P11.22) WILD-TYPE
  CLUS_1                            9                             38
  CLUS_2                            8                             17
  CLUS_3                            2                             14
  CLUS_4                            1                             15
  CLUS_5                            3                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(8P11.22) MUTATED        6      5     12      6      3
  AMP PEAK 10(8P11.22) WILD-TYPE     33     21     31     33     27
D10V5, multiclass
        clus
vv       AMP PEAK 10(8P11.22) MUTATED AMP PEAK 10(8P11.22) WILD-TYPE
  CLUS_1                            6                             33
  CLUS_2                            5                             21
  CLUS_3                           12                             31
  CLUS_4                            6                             33
  CLUS_5                            3                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8P11.22) MUTATED       12     16      4
  AMP PEAK 10(8P11.22) WILD-TYPE     62     59     24
D10V6, multiclass
        clus
vv       AMP PEAK 10(8P11.22) MUTATED AMP PEAK 10(8P11.22) WILD-TYPE
  CLUS_1                           12                             62
  CLUS_2                           16                             59
  CLUS_3                            4                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(8P11.22) MUTATED        8      8      6      8      2
  AMP PEAK 10(8P11.22) WILD-TYPE     44     39     19     23     20
D10V7, multiclass
        clus
vv       AMP PEAK 10(8P11.22) MUTATED AMP PEAK 10(8P11.22) WILD-TYPE
  CLUS_1                            8                             44
  CLUS_2                            8                             39
  CLUS_3                            6                             19
  CLUS_4                            8                             23
  CLUS_5                            2                             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8P11.22) MUTATED       21      6      5
  AMP PEAK 10(8P11.22) WILD-TYPE     81     36     28
D10V8, multiclass
        clus
vv       AMP PEAK 10(8P11.22) MUTATED AMP PEAK 10(8P11.22) WILD-TYPE
  CLUS_1                           21                             81
  CLUS_2                            6                             36
  CLUS_3                            5                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(8P11.22) MUTATED        5      3      2      3     12      2
  AMP PEAK 10(8P11.22) WILD-TYPE     22      8     25     10     39     25
                                vv
clus                             CLUS_7
  AMP PEAK 10(8P11.22) MUTATED        3
  AMP PEAK 10(8P11.22) WILD-TYPE     14
D10V9, multiclass
        clus
vv       AMP PEAK 10(8P11.22) MUTATED AMP PEAK 10(8P11.22) WILD-TYPE
  CLUS_1                            5                             22
  CLUS_2                            3                              8
  CLUS_3                            2                             25
  CLUS_4                            3                             10
  CLUS_5                           12                             39
  CLUS_6                            2                             25
  CLUS_7                            3                             14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(8P11.22) MUTATED        3     11      3      8      3      2
  AMP PEAK 10(8P11.22) WILD-TYPE     20     33     16     45     23      6
D10V10, multiclass
        clus
vv       AMP PEAK 10(8P11.22) MUTATED AMP PEAK 10(8P11.22) WILD-TYPE
  CLUS_1                            3                             20
  CLUS_2                           11                             33
  CLUS_3                            3                             16
  CLUS_4                            8                             45
  CLUS_5                            3                             23
  CLUS_6                            2                              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(8P11.21) MUTATED        7     11      2     14
  AMP PEAK 11(8P11.21) WILD-TYPE     19     63     44     24
D11V1, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                            7                             19
  CLUS_2                           11                             63
  CLUS_3                            2                             44
  CLUS_4                           14                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(8P11.21) MUTATED       13      6     10      4
  AMP PEAK 11(8P11.21) WILD-TYPE     32     43     42     33
D11V2, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                           13                             32
  CLUS_2                            6                             43
  CLUS_3                           10                             42
  CLUS_4                            4                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(8P11.21) MUTATED       10      6      4      0      4
  AMP PEAK 11(8P11.21) WILD-TYPE     29     19     16     15     19
D11V3, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                           10                             29
  CLUS_2                            6                             19
  CLUS_3                            4                             16
  CLUS_4                            0                             15
  CLUS_5                            4                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(8P11.21) MUTATED       11      7      2      1      3
  AMP PEAK 11(8P11.21) WILD-TYPE     36     18     14     15     15
D11V4, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                           11                             36
  CLUS_2                            7                             18
  CLUS_3                            2                             14
  CLUS_4                            1                             15
  CLUS_5                            3                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(8P11.21) MUTATED        7      5     12      5      3
  AMP PEAK 11(8P11.21) WILD-TYPE     32     21     31     34     27
D11V5, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                            7                             32
  CLUS_2                            5                             21
  CLUS_3                           12                             31
  CLUS_4                            5                             34
  CLUS_5                            3                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8P11.21) MUTATED       12     16      4
  AMP PEAK 11(8P11.21) WILD-TYPE     62     59     24
D11V6, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                           12                             62
  CLUS_2                           16                             59
  CLUS_3                            4                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(8P11.21) MUTATED        8      7      7      8      2
  AMP PEAK 11(8P11.21) WILD-TYPE     44     40     18     23     20
D11V7, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                            8                             44
  CLUS_2                            7                             40
  CLUS_3                            7                             18
  CLUS_4                            8                             23
  CLUS_5                            2                             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8P11.21) MUTATED       23      5      4
  AMP PEAK 11(8P11.21) WILD-TYPE     79     37     29
D11V8, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                           23                             79
  CLUS_2                            5                             37
  CLUS_3                            4                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8P11.21) MUTATED        5      3      2      3     14      1
  AMP PEAK 11(8P11.21) WILD-TYPE     22      8     25     10     37     26
                                vv
clus                             CLUS_7
  AMP PEAK 11(8P11.21) MUTATED        3
  AMP PEAK 11(8P11.21) WILD-TYPE     14
D11V9, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                            5                             22
  CLUS_2                            3                              8
  CLUS_3                            2                             25
  CLUS_4                            3                             10
  CLUS_5                           14                             37
  CLUS_6                            1                             26
  CLUS_7                            3                             14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8P11.21) MUTATED        4     10      5      8      2      2
  AMP PEAK 11(8P11.21) WILD-TYPE     19     34     14     45     24      6
D11V10, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                            4                             19
  CLUS_2                           10                             34
  CLUS_3                            5                             14
  CLUS_4                            8                             45
  CLUS_5                            2                             24
  CLUS_6                            2                              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q24.21) MUTATED        6     49      3     16
  AMP PEAK 12(8Q24.21) WILD-TYPE     20     25     43     22
D12V1, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                            6                             20
  CLUS_2                           49                             25
  CLUS_3                            3                             43
  CLUS_4                           16                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q24.21) MUTATED       25     13     28      7
  AMP PEAK 12(8Q24.21) WILD-TYPE     20     36     24     30
D12V2, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           25                             20
  CLUS_2                           13                             36
  CLUS_3                           28                             24
  CLUS_4                            7                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(8Q24.21) MUTATED       23     11      7      3     10
  AMP PEAK 12(8Q24.21) WILD-TYPE     16     14     13     12     13
D12V3, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           23                             16
  CLUS_2                           11                             14
  CLUS_3                            7                             13
  CLUS_4                            3                             12
  CLUS_5                           10                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(8Q24.21) MUTATED       22     12      3      6     11
  AMP PEAK 12(8Q24.21) WILD-TYPE     25     13     13     10      7
D12V4, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           22                             25
  CLUS_2                           12                             13
  CLUS_3                            3                             13
  CLUS_4                            6                             10
  CLUS_5                           11                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(8Q24.21) MUTATED       18      9     26     14      5
  AMP PEAK 12(8Q24.21) WILD-TYPE     21     17     17     25     25
D12V5, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           18                             21
  CLUS_2                            9                             17
  CLUS_3                           26                             17
  CLUS_4                           14                             25
  CLUS_5                            5                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED       31     35      6
  AMP PEAK 12(8Q24.21) WILD-TYPE     43     40     22
D12V6, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           31                             43
  CLUS_2                           35                             40
  CLUS_3                            6                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(8Q24.21) MUTATED       26     13     13     13      7
  AMP PEAK 12(8Q24.21) WILD-TYPE     26     34     12     18     15
D12V7, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           26                             26
  CLUS_2                           13                             34
  CLUS_3                           13                             12
  CLUS_4                           13                             18
  CLUS_5                            7                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED       49     14      9
  AMP PEAK 12(8Q24.21) WILD-TYPE     53     28     24
D12V8, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           49                             53
  CLUS_2                           14                             28
  CLUS_3                            9                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8Q24.21) MUTATED        9      3     13      3     29      8
  AMP PEAK 12(8Q24.21) WILD-TYPE     18      8     14     10     22     19
                                vv
clus                             CLUS_7
  AMP PEAK 12(8Q24.21) MUTATED        6
  AMP PEAK 12(8Q24.21) WILD-TYPE     11
D12V9, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                            9                             18
  CLUS_2                            3                              8
  CLUS_3                           13                             14
  CLUS_4                            3                             10
  CLUS_5                           29                             22
  CLUS_6                            8                             19
  CLUS_7                            6                             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8Q24.21) MUTATED       11     24      5     23      6      2
  AMP PEAK 12(8Q24.21) WILD-TYPE     12     20     14     30     20      6
D12V10, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           11                             12
  CLUS_2                           24                             20
  CLUS_3                            5                             14
  CLUS_4                           23                             30
  CLUS_5                            6                             20
  CLUS_6                            2                              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(9P13.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(9P13.3) MUTATED        5     11      2      6
  AMP PEAK 13(9P13.3) WILD-TYPE     21     63     44     32
D13V1, multiclass
        clus
vv       AMP PEAK 13(9P13.3) MUTATED AMP PEAK 13(9P13.3) WILD-TYPE
  CLUS_1                           5                            21
  CLUS_2                          11                            63
  CLUS_3                           2                            44
  CLUS_4                           6                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(9P13.3) MUTATED        7      5      7      5
  AMP PEAK 13(9P13.3) WILD-TYPE     38     44     45     32
D13V2, multiclass
        clus
vv       AMP PEAK 13(9P13.3) MUTATED AMP PEAK 13(9P13.3) WILD-TYPE
  CLUS_1                           7                            38
  CLUS_2                           5                            44
  CLUS_3                           7                            45
  CLUS_4                           5                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(9P13.3) MUTATED        6      4      2      1      3
  AMP PEAK 13(9P13.3) WILD-TYPE     33     21     18     14     20
D13V3, multiclass
        clus
vv       AMP PEAK 13(9P13.3) MUTATED AMP PEAK 13(9P13.3) WILD-TYPE
  CLUS_1                           6                            33
  CLUS_2                           4                            21
  CLUS_3                           2                            18
  CLUS_4                           1                            14
  CLUS_5                           3                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(9P13.3) MUTATED        5      5      0      3      3
  AMP PEAK 13(9P13.3) WILD-TYPE     42     20     16     13     15
D13V4, multiclass
        clus
vv       AMP PEAK 13(9P13.3) MUTATED AMP PEAK 13(9P13.3) WILD-TYPE
  CLUS_1                           5                            42
  CLUS_2                           5                            20
  CLUS_3                           0                            16
  CLUS_4                           3                            13
  CLUS_5                           3                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(9P13.3) MUTATED        5      3      8      4      3
  AMP PEAK 13(9P13.3) WILD-TYPE     34     23     35     35     27
D13V5, multiclass
        clus
vv       AMP PEAK 13(9P13.3) MUTATED AMP PEAK 13(9P13.3) WILD-TYPE
  CLUS_1                           5                            34
  CLUS_2                           3                            23
  CLUS_3                           8                            35
  CLUS_4                           4                            35
  CLUS_5                           3                            27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(9P13.3) MUTATED        7     13      3
  AMP PEAK 13(9P13.3) WILD-TYPE     67     62     25
D13V6, multiclass
        clus
vv       AMP PEAK 13(9P13.3) MUTATED AMP PEAK 13(9P13.3) WILD-TYPE
  CLUS_1                           7                            67
  CLUS_2                          13                            62
  CLUS_3                           3                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(9P13.3) MUTATED        8      8      1      4      2
  AMP PEAK 13(9P13.3) WILD-TYPE     44     39     24     27     20
D13V7, multiclass
        clus
vv       AMP PEAK 13(9P13.3) MUTATED AMP PEAK 13(9P13.3) WILD-TYPE
  CLUS_1                           8                            44
  CLUS_2                           8                            39
  CLUS_3                           1                            24
  CLUS_4                           4                            27
  CLUS_5                           2                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(9P13.3) MUTATED       18      2      3
  AMP PEAK 13(9P13.3) WILD-TYPE     84     40     30
D13V8, multiclass
        clus
vv       AMP PEAK 13(9P13.3) MUTATED AMP PEAK 13(9P13.3) WILD-TYPE
  CLUS_1                          18                            84
  CLUS_2                           2                            40
  CLUS_3                           3                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(9P13.3) MUTATED        3      2      3      2      7      3
  AMP PEAK 13(9P13.3) WILD-TYPE     24      9     24     11     44     24
                               vv
clus                            CLUS_7
  AMP PEAK 13(9P13.3) MUTATED        3
  AMP PEAK 13(9P13.3) WILD-TYPE     14
D13V9, multiclass
        clus
vv       AMP PEAK 13(9P13.3) MUTATED AMP PEAK 13(9P13.3) WILD-TYPE
  CLUS_1                           3                            24
  CLUS_2                           2                             9
  CLUS_3                           3                            24
  CLUS_4                           2                            11
  CLUS_5                           7                            44
  CLUS_6                           3                            24
  CLUS_7                           3                            14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(9P13.3) MUTATED        2      9      3      5      1      3
  AMP PEAK 13(9P13.3) WILD-TYPE     21     35     16     48     25      5
D13V10, multiclass
        clus
vv       AMP PEAK 13(9P13.3) MUTATED AMP PEAK 13(9P13.3) WILD-TYPE
  CLUS_1                           2                            21
  CLUS_2                           9                            35
  CLUS_3                           3                            16
  CLUS_4                           5                            48
  CLUS_5                           1                            25
  CLUS_6                           3                             5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(12P13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12P13.33) MUTATED        1     25      3     10
  AMP PEAK 14(12P13.33) WILD-TYPE     25     49     43     28
D14V1, multiclass
        clus
vv       AMP PEAK 14(12P13.33) MUTATED AMP PEAK 14(12P13.33) WILD-TYPE
  CLUS_1                             1                              25
  CLUS_2                            25                              49
  CLUS_3                             3                              43
  CLUS_4                            10                              28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12P13.33) MUTATED       14      9     16      0
  AMP PEAK 14(12P13.33) WILD-TYPE     31     40     36     37
D14V2, multiclass
        clus
vv       AMP PEAK 14(12P13.33) MUTATED AMP PEAK 14(12P13.33) WILD-TYPE
  CLUS_1                            14                              31
  CLUS_2                             9                              40
  CLUS_3                            16                              36
  CLUS_4                             0                              37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(12P13.33) MUTATED       10      2      4      2      6
  AMP PEAK 14(12P13.33) WILD-TYPE     29     23     16     13     17
D14V3, multiclass
        clus
vv       AMP PEAK 14(12P13.33) MUTATED AMP PEAK 14(12P13.33) WILD-TYPE
  CLUS_1                            10                              29
  CLUS_2                             2                              23
  CLUS_3                             4                              16
  CLUS_4                             2                              13
  CLUS_5                             6                              17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(12P13.33) MUTATED        7      3      3      5      6
  AMP PEAK 14(12P13.33) WILD-TYPE     40     22     13     11     12
D14V4, multiclass
        clus
vv       AMP PEAK 14(12P13.33) MUTATED AMP PEAK 14(12P13.33) WILD-TYPE
  CLUS_1                             7                              40
  CLUS_2                             3                              22
  CLUS_3                             3                              13
  CLUS_4                             5                              11
  CLUS_5                             6                              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(12P13.33) MUTATED        9      9     13      6      1
  AMP PEAK 14(12P13.33) WILD-TYPE     30     17     30     33     29
D14V5, multiclass
        clus
vv       AMP PEAK 14(12P13.33) MUTATED AMP PEAK 14(12P13.33) WILD-TYPE
  CLUS_1                             9                              30
  CLUS_2                             9                              17
  CLUS_3                            13                              30
  CLUS_4                             6                              33
  CLUS_5                             1                              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12P13.33) MUTATED       13     18      7
  AMP PEAK 14(12P13.33) WILD-TYPE     61     57     21
D14V6, multiclass
        clus
vv       AMP PEAK 14(12P13.33) MUTATED AMP PEAK 14(12P13.33) WILD-TYPE
  CLUS_1                            13                              61
  CLUS_2                            18                              57
  CLUS_3                             7                              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(12P13.33) MUTATED       12      4      6     11      5
  AMP PEAK 14(12P13.33) WILD-TYPE     40     43     19     20     17
D14V7, multiclass
        clus
vv       AMP PEAK 14(12P13.33) MUTATED AMP PEAK 14(12P13.33) WILD-TYPE
  CLUS_1                            12                              40
  CLUS_2                             4                              43
  CLUS_3                             6                              19
  CLUS_4                            11                              20
  CLUS_5                             5                              17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12P13.33) MUTATED       24      5      9
  AMP PEAK 14(12P13.33) WILD-TYPE     78     37     24
D14V8, multiclass
        clus
vv       AMP PEAK 14(12P13.33) MUTATED AMP PEAK 14(12P13.33) WILD-TYPE
  CLUS_1                            24                              78
  CLUS_2                             5                              37
  CLUS_3                             9                              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(12P13.33) MUTATED        5      2      5      0     15      2
  AMP PEAK 14(12P13.33) WILD-TYPE     22      9     22     13     36     25
                                 vv
clus                              CLUS_7
  AMP PEAK 14(12P13.33) MUTATED        8
  AMP PEAK 14(12P13.33) WILD-TYPE      9
D14V9, multiclass
        clus
vv       AMP PEAK 14(12P13.33) MUTATED AMP PEAK 14(12P13.33) WILD-TYPE
  CLUS_1                             5                              22
  CLUS_2                             2                               9
  CLUS_3                             5                              22
  CLUS_4                             0                              13
  CLUS_5                            15                              36
  CLUS_6                             2                              25
  CLUS_7                             8                               9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(12P13.33) MUTATED        2     12      4     11      2      6
  AMP PEAK 14(12P13.33) WILD-TYPE     21     32     15     42     24      2
D14V10, multiclass
        clus
vv       AMP PEAK 14(12P13.33) MUTATED AMP PEAK 14(12P13.33) WILD-TYPE
  CLUS_1                             2                              21
  CLUS_2                            12                              32
  CLUS_3                             4                              15
  CLUS_4                            11                              42
  CLUS_5                             2                              24
  CLUS_6                             6                               2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(12P11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(12P11.21) MUTATED        2     28      2     11
  AMP PEAK 15(12P11.21) WILD-TYPE     24     46     44     27
D15V1, multiclass
        clus
vv       AMP PEAK 15(12P11.21) MUTATED AMP PEAK 15(12P11.21) WILD-TYPE
  CLUS_1                             2                              24
  CLUS_2                            28                              46
  CLUS_3                             2                              44
  CLUS_4                            11                              27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(12P11.21) MUTATED       20      7     16      0
  AMP PEAK 15(12P11.21) WILD-TYPE     25     42     36     37
D15V2, multiclass
        clus
vv       AMP PEAK 15(12P11.21) MUTATED AMP PEAK 15(12P11.21) WILD-TYPE
  CLUS_1                            20                              25
  CLUS_2                             7                              42
  CLUS_3                            16                              36
  CLUS_4                             0                              37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(12P11.21) MUTATED       10      3      5      2      7
  AMP PEAK 15(12P11.21) WILD-TYPE     29     22     15     13     16
D15V3, multiclass
        clus
vv       AMP PEAK 15(12P11.21) MUTATED AMP PEAK 15(12P11.21) WILD-TYPE
  CLUS_1                            10                              29
  CLUS_2                             3                              22
  CLUS_3                             5                              15
  CLUS_4                             2                              13
  CLUS_5                             7                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(12P11.21) MUTATED        8      4      5      4      6
  AMP PEAK 15(12P11.21) WILD-TYPE     39     21     11     12     12
D15V4, multiclass
        clus
vv       AMP PEAK 15(12P11.21) MUTATED AMP PEAK 15(12P11.21) WILD-TYPE
  CLUS_1                             8                              39
  CLUS_2                             4                              21
  CLUS_3                             5                              11
  CLUS_4                             4                              12
  CLUS_5                             6                              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(12P11.21) MUTATED       10     10     16      3      2
  AMP PEAK 15(12P11.21) WILD-TYPE     29     16     27     36     28
D15V5, multiclass
        clus
vv       AMP PEAK 15(12P11.21) MUTATED AMP PEAK 15(12P11.21) WILD-TYPE
  CLUS_1                            10                              29
  CLUS_2                            10                              16
  CLUS_3                            16                              27
  CLUS_4                             3                              36
  CLUS_5                             2                              28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(12P11.21) MUTATED       13     20      8
  AMP PEAK 15(12P11.21) WILD-TYPE     61     55     20
D15V6, multiclass
        clus
vv       AMP PEAK 15(12P11.21) MUTATED AMP PEAK 15(12P11.21) WILD-TYPE
  CLUS_1                            13                              61
  CLUS_2                            20                              55
  CLUS_3                             8                              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(12P11.21) MUTATED       15      6      3     11      6
  AMP PEAK 15(12P11.21) WILD-TYPE     37     41     22     20     16
D15V7, multiclass
        clus
vv       AMP PEAK 15(12P11.21) MUTATED AMP PEAK 15(12P11.21) WILD-TYPE
  CLUS_1                            15                              37
  CLUS_2                             6                              41
  CLUS_3                             3                              22
  CLUS_4                            11                              20
  CLUS_5                             6                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(12P11.21) MUTATED       27      3     11
  AMP PEAK 15(12P11.21) WILD-TYPE     75     39     22
D15V8, multiclass
        clus
vv       AMP PEAK 15(12P11.21) MUTATED AMP PEAK 15(12P11.21) WILD-TYPE
  CLUS_1                            27                              75
  CLUS_2                             3                              39
  CLUS_3                            11                              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(12P11.21) MUTATED        4      3      6      0     13      6
  AMP PEAK 15(12P11.21) WILD-TYPE     23      8     21     13     38     21
                                 vv
clus                              CLUS_7
  AMP PEAK 15(12P11.21) MUTATED        8
  AMP PEAK 15(12P11.21) WILD-TYPE      9
D15V9, multiclass
        clus
vv       AMP PEAK 15(12P11.21) MUTATED AMP PEAK 15(12P11.21) WILD-TYPE
  CLUS_1                             4                              23
  CLUS_2                             3                               8
  CLUS_3                             6                              21
  CLUS_4                             0                              13
  CLUS_5                            13                              38
  CLUS_6                             6                              21
  CLUS_7                             8                               9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(12P11.21) MUTATED        4     13      4      9      4      6
  AMP PEAK 15(12P11.21) WILD-TYPE     19     31     15     44     22      2
D15V10, multiclass
        clus
vv       AMP PEAK 15(12P11.21) MUTATED AMP PEAK 15(12P11.21) WILD-TYPE
  CLUS_1                             4                              19
  CLUS_2                            13                              31
  CLUS_3                             4                              15
  CLUS_4                             9                              44
  CLUS_5                             4                              22
  CLUS_6                             6                               2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(12Q15) MUTATED        0     20      2      7
  AMP PEAK 16(12Q15) WILD-TYPE     26     54     44     31
D16V1, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                          0                           26
  CLUS_2                         20                           54
  CLUS_3                          2                           44
  CLUS_4                          7                           31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(12Q15) MUTATED       10      7     12      0
  AMP PEAK 16(12Q15) WILD-TYPE     35     42     40     37
D16V2, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                         10                           35
  CLUS_2                          7                           42
  CLUS_3                         12                           40
  CLUS_4                          0                           37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(12Q15) MUTATED        7      1      5      2      5
  AMP PEAK 16(12Q15) WILD-TYPE     32     24     15     13     18
D16V3, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                          7                           32
  CLUS_2                          1                           24
  CLUS_3                          5                           15
  CLUS_4                          2                           13
  CLUS_5                          5                           18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(12Q15) MUTATED        6      1      3      4      6
  AMP PEAK 16(12Q15) WILD-TYPE     41     24     13     12     12
D16V4, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                          6                           41
  CLUS_2                          1                           24
  CLUS_3                          3                           13
  CLUS_4                          4                           12
  CLUS_5                          6                           12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(12Q15) MUTATED        5      9     10      3      1
  AMP PEAK 16(12Q15) WILD-TYPE     34     17     33     36     29
D16V5, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                          5                           34
  CLUS_2                          9                           17
  CLUS_3                         10                           33
  CLUS_4                          3                           36
  CLUS_5                          1                           29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(12Q15) MUTATED       11     10      7
  AMP PEAK 16(12Q15) WILD-TYPE     63     65     21
D16V6, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                         11                           63
  CLUS_2                         10                           65
  CLUS_3                          7                           21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(12Q15) MUTATED       10      2      3      9      4
  AMP PEAK 16(12Q15) WILD-TYPE     42     45     22     22     18
D16V7, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                         10                           42
  CLUS_2                          2                           45
  CLUS_3                          3                           22
  CLUS_4                          9                           22
  CLUS_5                          4                           18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(12Q15) MUTATED       16      3      9
  AMP PEAK 16(12Q15) WILD-TYPE     86     39     24
D16V8, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                         16                           86
  CLUS_2                          3                           39
  CLUS_3                          9                           24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 16(12Q15) MUTATED        3      0      3      0     10      4      7
  AMP PEAK 16(12Q15) WILD-TYPE     24     11     24     13     41     23     10
D16V9, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                          3                           24
  CLUS_2                          0                           11
  CLUS_3                          3                           24
  CLUS_4                          0                           13
  CLUS_5                         10                           41
  CLUS_6                          4                           23
  CLUS_7                          7                           10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(12Q15) MUTATED        1      9      2      6      3      6
  AMP PEAK 16(12Q15) WILD-TYPE     22     35     17     47     23      2
D16V10, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                          1                           22
  CLUS_2                          9                           35
  CLUS_3                          2                           17
  CLUS_4                          6                           47
  CLUS_5                          3                           23
  CLUS_6                          6                            2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(15Q26.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(15Q26.1) MUTATED        4     16      0      2
  AMP PEAK 17(15Q26.1) WILD-TYPE     22     58     46     36
D17V1, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                            4                             22
  CLUS_2                           16                             58
  CLUS_3                            0                             46
  CLUS_4                            2                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(15Q26.1) MUTATED        4      6     10      1
  AMP PEAK 17(15Q26.1) WILD-TYPE     41     43     42     36
D17V2, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                            4                             41
  CLUS_2                            6                             43
  CLUS_3                           10                             42
  CLUS_4                            1                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(15Q26.1) MUTATED        8      2      2      0      3
  AMP PEAK 17(15Q26.1) WILD-TYPE     31     23     18     15     20
D17V3, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                            8                             31
  CLUS_2                            2                             23
  CLUS_3                            2                             18
  CLUS_4                            0                             15
  CLUS_5                            3                             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(15Q26.1) MUTATED        8      2      1      1      3
  AMP PEAK 17(15Q26.1) WILD-TYPE     39     23     15     15     15
D17V4, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                            8                             39
  CLUS_2                            2                             23
  CLUS_3                            1                             15
  CLUS_4                            1                             15
  CLUS_5                            3                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(15Q26.1) MUTATED        6      3      6      4      2
  AMP PEAK 17(15Q26.1) WILD-TYPE     33     23     37     35     28
D17V5, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                            6                             33
  CLUS_2                            3                             23
  CLUS_3                            6                             37
  CLUS_4                            4                             35
  CLUS_5                            2                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(15Q26.1) MUTATED       13      7      1
  AMP PEAK 17(15Q26.1) WILD-TYPE     61     68     27
D17V6, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                           13                             61
  CLUS_2                            7                             68
  CLUS_3                            1                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(15Q26.1) MUTATED        7      3      4      5      2
  AMP PEAK 17(15Q26.1) WILD-TYPE     45     44     21     26     20
D17V7, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                            7                             45
  CLUS_2                            3                             44
  CLUS_3                            4                             21
  CLUS_4                            5                             26
  CLUS_5                            2                             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(15Q26.1) MUTATED       13      6      2
  AMP PEAK 17(15Q26.1) WILD-TYPE     89     36     31
D17V8, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                           13                             89
  CLUS_2                            6                             36
  CLUS_3                            2                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(15Q26.1) MUTATED        2      0      5      1     11      1
  AMP PEAK 17(15Q26.1) WILD-TYPE     25     11     22     12     40     26
                                vv
clus                             CLUS_7
  AMP PEAK 17(15Q26.1) MUTATED        0
  AMP PEAK 17(15Q26.1) WILD-TYPE     17
D17V9, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                            2                             25
  CLUS_2                            0                             11
  CLUS_3                            5                             22
  CLUS_4                            1                             12
  CLUS_5                           11                             40
  CLUS_6                            1                             26
  CLUS_7                            0                             17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(15Q26.1) MUTATED        4      3      4      7      1      1
  AMP PEAK 17(15Q26.1) WILD-TYPE     19     41     15     46     25      7
D17V10, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                            4                             19
  CLUS_2                            3                             41
  CLUS_3                            4                             15
  CLUS_4                            7                             46
  CLUS_5                            1                             25
  CLUS_6                            1                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(17P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(17P11.2) MUTATED        3      6      3      3
  AMP PEAK 18(17P11.2) WILD-TYPE     23     68     43     35
D18V1, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                            3                             23
  CLUS_2                            6                             68
  CLUS_3                            3                             43
  CLUS_4                            3                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(17P11.2) MUTATED        4      7      3      1
  AMP PEAK 18(17P11.2) WILD-TYPE     41     42     49     36
D18V2, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                            4                             41
  CLUS_2                            7                             42
  CLUS_3                            3                             49
  CLUS_4                            1                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(17P11.2) MUTATED        4      0      3      1      2
  AMP PEAK 18(17P11.2) WILD-TYPE     35     25     17     14     21
D18V3, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                            4                             35
  CLUS_2                            0                             25
  CLUS_3                            3                             17
  CLUS_4                            1                             14
  CLUS_5                            2                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(17P11.2) MUTATED        5      0      1      2      2
  AMP PEAK 18(17P11.2) WILD-TYPE     42     25     15     14     16
D18V4, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                            5                             42
  CLUS_2                            0                             25
  CLUS_3                            1                             15
  CLUS_4                            2                             14
  CLUS_5                            2                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(17P11.2) MUTATED        2      6      4      2      1
  AMP PEAK 18(17P11.2) WILD-TYPE     37     20     39     37     29
D18V5, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                            2                             37
  CLUS_2                            6                             20
  CLUS_3                            4                             39
  CLUS_4                            2                             37
  CLUS_5                            1                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(17P11.2) MUTATED        4      5      6
  AMP PEAK 18(17P11.2) WILD-TYPE     70     70     22
D18V6, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                            4                             70
  CLUS_2                            5                             70
  CLUS_3                            6                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(17P11.2) MUTATED        3      2      2      5      3
  AMP PEAK 18(17P11.2) WILD-TYPE     49     45     23     26     19
D18V7, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                            3                             49
  CLUS_2                            2                             45
  CLUS_3                            2                             23
  CLUS_4                            5                             26
  CLUS_5                            3                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(17P11.2) MUTATED        7      2      6
  AMP PEAK 18(17P11.2) WILD-TYPE     95     40     27
D18V8, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                            7                             95
  CLUS_2                            2                             40
  CLUS_3                            6                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(17P11.2) MUTATED        2      0      2      1      5      0
  AMP PEAK 18(17P11.2) WILD-TYPE     25     11     25     12     46     27
                                vv
clus                             CLUS_7
  AMP PEAK 18(17P11.2) MUTATED        5
  AMP PEAK 18(17P11.2) WILD-TYPE     12
D18V9, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                            2                             25
  CLUS_2                            0                             11
  CLUS_3                            2                             25
  CLUS_4                            1                             12
  CLUS_5                            5                             46
  CLUS_6                            0                             27
  CLUS_7                            5                             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(17P11.2) MUTATED        1      4      1      3      1      5
  AMP PEAK 18(17P11.2) WILD-TYPE     22     40     18     50     25      3
D18V10, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                            1                             22
  CLUS_2                            4                             40
  CLUS_3                            1                             18
  CLUS_4                            3                             50
  CLUS_5                            1                             25
  CLUS_6                            5                              3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(17Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17Q12) MUTATED        4     14      3     10
  AMP PEAK 19(17Q12) WILD-TYPE     22     60     43     28
D19V1, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                          4                           22
  CLUS_2                         14                           60
  CLUS_3                          3                           43
  CLUS_4                         10                           28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17Q12) MUTATED       11      7     11      2
  AMP PEAK 19(17Q12) WILD-TYPE     34     42     41     35
D19V2, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         11                           34
  CLUS_2                          7                           42
  CLUS_3                         11                           41
  CLUS_4                          2                           35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(17Q12) MUTATED        7      5      4      2      3
  AMP PEAK 19(17Q12) WILD-TYPE     32     20     16     13     20
D19V3, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                          7                           32
  CLUS_2                          5                           20
  CLUS_3                          4                           16
  CLUS_4                          2                           13
  CLUS_5                          3                           20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(17Q12) MUTATED        8      5      3      2      3
  AMP PEAK 19(17Q12) WILD-TYPE     39     20     13     14     15
D19V4, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                          8                           39
  CLUS_2                          5                           20
  CLUS_3                          3                           13
  CLUS_4                          2                           14
  CLUS_5                          3                           15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(17Q12) MUTATED        7      8     11      2      3
  AMP PEAK 19(17Q12) WILD-TYPE     32     18     32     37     27
D19V5, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                          7                           32
  CLUS_2                          8                           18
  CLUS_3                         11                           32
  CLUS_4                          2                           37
  CLUS_5                          3                           27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q12) MUTATED        9     15      7
  AMP PEAK 19(17Q12) WILD-TYPE     65     60     21
D19V6, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                          9                           65
  CLUS_2                         15                           60
  CLUS_3                          7                           21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(17Q12) MUTATED       13      6      0      8      4
  AMP PEAK 19(17Q12) WILD-TYPE     39     41     25     23     18
D19V7, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         13                           39
  CLUS_2                          6                           41
  CLUS_3                          0                           25
  CLUS_4                          8                           23
  CLUS_5                          4                           18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q12) MUTATED       19      3      9
  AMP PEAK 19(17Q12) WILD-TYPE     83     39     24
D19V8, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         19                           83
  CLUS_2                          3                           39
  CLUS_3                          9                           24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 19(17Q12) MUTATED        5      2      4      0     11      4      5
  AMP PEAK 19(17Q12) WILD-TYPE     22      9     23     13     40     23     12
D19V9, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                          5                           22
  CLUS_2                          2                            9
  CLUS_3                          4                           23
  CLUS_4                          0                           13
  CLUS_5                         11                           40
  CLUS_6                          4                           23
  CLUS_7                          5                           12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(17Q12) MUTATED        3     13      1      5      4      5
  AMP PEAK 19(17Q12) WILD-TYPE     20     31     18     48     22      3
D19V10, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                          3                           20
  CLUS_2                         13                           31
  CLUS_3                          1                           18
  CLUS_4                          5                           48
  CLUS_5                          4                           22
  CLUS_6                          5                            3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(18Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(18Q11.2) MUTATED        8     33      3     12
  AMP PEAK 20(18Q11.2) WILD-TYPE     18     41     43     26
D20V1, multiclass
        clus
vv       AMP PEAK 20(18Q11.2) MUTATED AMP PEAK 20(18Q11.2) WILD-TYPE
  CLUS_1                            8                             18
  CLUS_2                           33                             41
  CLUS_3                            3                             43
  CLUS_4                           12                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(18Q11.2) MUTATED       20     10     21      4
  AMP PEAK 20(18Q11.2) WILD-TYPE     25     39     31     33
D20V2, multiclass
        clus
vv       AMP PEAK 20(18Q11.2) MUTATED AMP PEAK 20(18Q11.2) WILD-TYPE
  CLUS_1                           20                             25
  CLUS_2                           10                             39
  CLUS_3                           21                             31
  CLUS_4                            4                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(18Q11.2) MUTATED       16     11      3      6      4
  AMP PEAK 20(18Q11.2) WILD-TYPE     23     14     17      9     19
D20V3, multiclass
        clus
vv       AMP PEAK 20(18Q11.2) MUTATED AMP PEAK 20(18Q11.2) WILD-TYPE
  CLUS_1                           16                             23
  CLUS_2                           11                             14
  CLUS_3                            3                             17
  CLUS_4                            6                              9
  CLUS_5                            4                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(18Q11.2) MUTATED       17     11      2      7      3
  AMP PEAK 20(18Q11.2) WILD-TYPE     30     14     14      9     15
D20V4, multiclass
        clus
vv       AMP PEAK 20(18Q11.2) MUTATED AMP PEAK 20(18Q11.2) WILD-TYPE
  CLUS_1                           17                             30
  CLUS_2                           11                             14
  CLUS_3                            2                             14
  CLUS_4                            7                              9
  CLUS_5                            3                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(18Q11.2) MUTATED       21      6     16      8      3
  AMP PEAK 20(18Q11.2) WILD-TYPE     18     20     27     31     27
D20V5, multiclass
        clus
vv       AMP PEAK 20(18Q11.2) MUTATED AMP PEAK 20(18Q11.2) WILD-TYPE
  CLUS_1                           21                             18
  CLUS_2                            6                             20
  CLUS_3                           16                             27
  CLUS_4                            8                             31
  CLUS_5                            3                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(18Q11.2) MUTATED       22     28      4
  AMP PEAK 20(18Q11.2) WILD-TYPE     52     47     24
D20V6, multiclass
        clus
vv       AMP PEAK 20(18Q11.2) MUTATED AMP PEAK 20(18Q11.2) WILD-TYPE
  CLUS_1                           22                             52
  CLUS_2                           28                             47
  CLUS_3                            4                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(18Q11.2) MUTATED       24     10      6     11      3
  AMP PEAK 20(18Q11.2) WILD-TYPE     28     37     19     20     19
D20V7, multiclass
        clus
vv       AMP PEAK 20(18Q11.2) MUTATED AMP PEAK 20(18Q11.2) WILD-TYPE
  CLUS_1                           24                             28
  CLUS_2                           10                             37
  CLUS_3                            6                             19
  CLUS_4                           11                             20
  CLUS_5                            3                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(18Q11.2) MUTATED       42      9      3
  AMP PEAK 20(18Q11.2) WILD-TYPE     60     33     30
D20V8, multiclass
        clus
vv       AMP PEAK 20(18Q11.2) MUTATED AMP PEAK 20(18Q11.2) WILD-TYPE
  CLUS_1                           42                             60
  CLUS_2                            9                             33
  CLUS_3                            3                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(18Q11.2) MUTATED        7      4      8      2     23      5
  AMP PEAK 20(18Q11.2) WILD-TYPE     20      7     19     11     28     22
                                vv
clus                             CLUS_7
  AMP PEAK 20(18Q11.2) MUTATED        4
  AMP PEAK 20(18Q11.2) WILD-TYPE     13
D20V9, multiclass
        clus
vv       AMP PEAK 20(18Q11.2) MUTATED AMP PEAK 20(18Q11.2) WILD-TYPE
  CLUS_1                            7                             20
  CLUS_2                            4                              7
  CLUS_3                            8                             19
  CLUS_4                            2                             11
  CLUS_5                           23                             28
  CLUS_6                            5                             22
  CLUS_7                            4                             13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(18Q11.2) MUTATED       11     20      6     13      0      3
  AMP PEAK 20(18Q11.2) WILD-TYPE     12     24     13     40     26      5
D20V10, multiclass
        clus
vv       AMP PEAK 20(18Q11.2) MUTATED AMP PEAK 20(18Q11.2) WILD-TYPE
  CLUS_1                           11                             12
  CLUS_2                           20                             24
  CLUS_3                            6                             13
  CLUS_4                           13                             40
  CLUS_5                            0                             26
  CLUS_6                            3                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(19Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(19Q13.2) MUTATED        6     29      2     10
  AMP PEAK 21(19Q13.2) WILD-TYPE     20     45     44     28
D21V1, multiclass
        clus
vv       AMP PEAK 21(19Q13.2) MUTATED AMP PEAK 21(19Q13.2) WILD-TYPE
  CLUS_1                            6                             20
  CLUS_2                           29                             45
  CLUS_3                            2                             44
  CLUS_4                           10                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(19Q13.2) MUTATED       11      9     22      5
  AMP PEAK 21(19Q13.2) WILD-TYPE     34     40     30     32
D21V2, multiclass
        clus
vv       AMP PEAK 21(19Q13.2) MUTATED AMP PEAK 21(19Q13.2) WILD-TYPE
  CLUS_1                           11                             34
  CLUS_2                            9                             40
  CLUS_3                           22                             30
  CLUS_4                            5                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(19Q13.2) MUTATED       13      4      7      2      5
  AMP PEAK 21(19Q13.2) WILD-TYPE     26     21     13     13     18
D21V3, multiclass
        clus
vv       AMP PEAK 21(19Q13.2) MUTATED AMP PEAK 21(19Q13.2) WILD-TYPE
  CLUS_1                           13                             26
  CLUS_2                            4                             21
  CLUS_3                            7                             13
  CLUS_4                            2                             13
  CLUS_5                            5                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(19Q13.2) MUTATED       11      4      4      5      7
  AMP PEAK 21(19Q13.2) WILD-TYPE     36     21     12     11     11
D21V4, multiclass
        clus
vv       AMP PEAK 21(19Q13.2) MUTATED AMP PEAK 21(19Q13.2) WILD-TYPE
  CLUS_1                           11                             36
  CLUS_2                            4                             21
  CLUS_3                            4                             12
  CLUS_4                            5                             11
  CLUS_5                            7                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(19Q13.2) MUTATED        9     12     16      4      5
  AMP PEAK 21(19Q13.2) WILD-TYPE     30     14     27     35     25
D21V5, multiclass
        clus
vv       AMP PEAK 21(19Q13.2) MUTATED AMP PEAK 21(19Q13.2) WILD-TYPE
  CLUS_1                            9                             30
  CLUS_2                           12                             14
  CLUS_3                           16                             27
  CLUS_4                            4                             35
  CLUS_5                            5                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(19Q13.2) MUTATED       20     20      6
  AMP PEAK 21(19Q13.2) WILD-TYPE     54     55     22
D21V6, multiclass
        clus
vv       AMP PEAK 21(19Q13.2) MUTATED AMP PEAK 21(19Q13.2) WILD-TYPE
  CLUS_1                           20                             54
  CLUS_2                           20                             55
  CLUS_3                            6                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(19Q13.2) MUTATED       16      9      6     11      4
  AMP PEAK 21(19Q13.2) WILD-TYPE     36     38     19     20     18
D21V7, multiclass
        clus
vv       AMP PEAK 21(19Q13.2) MUTATED AMP PEAK 21(19Q13.2) WILD-TYPE
  CLUS_1                           16                             36
  CLUS_2                            9                             38
  CLUS_3                            6                             19
  CLUS_4                           11                             20
  CLUS_5                            4                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(19Q13.2) MUTATED       31      7      8
  AMP PEAK 21(19Q13.2) WILD-TYPE     71     35     25
D21V8, multiclass
        clus
vv       AMP PEAK 21(19Q13.2) MUTATED AMP PEAK 21(19Q13.2) WILD-TYPE
  CLUS_1                           31                             71
  CLUS_2                            7                             35
  CLUS_3                            8                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(19Q13.2) MUTATED        8      5      7      1     16      4
  AMP PEAK 21(19Q13.2) WILD-TYPE     19      6     20     12     35     23
                                vv
clus                             CLUS_7
  AMP PEAK 21(19Q13.2) MUTATED        5
  AMP PEAK 21(19Q13.2) WILD-TYPE     12
D21V9, multiclass
        clus
vv       AMP PEAK 21(19Q13.2) MUTATED AMP PEAK 21(19Q13.2) WILD-TYPE
  CLUS_1                            8                             19
  CLUS_2                            5                              6
  CLUS_3                            7                             20
  CLUS_4                            1                             12
  CLUS_5                           16                             35
  CLUS_6                            4                             23
  CLUS_7                            5                             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(19Q13.2) MUTATED        7     15      4     11      5      4
  AMP PEAK 21(19Q13.2) WILD-TYPE     16     29     15     42     21      4
D21V10, multiclass
        clus
vv       AMP PEAK 21(19Q13.2) MUTATED AMP PEAK 21(19Q13.2) WILD-TYPE
  CLUS_1                            7                             16
  CLUS_2                           15                             29
  CLUS_3                            4                             15
  CLUS_4                           11                             42
  CLUS_5                            5                             21
  CLUS_6                            4                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(20P11.23) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20P11.23) MUTATED        2     19      4     13
  AMP PEAK 22(20P11.23) WILD-TYPE     24     55     42     25
D22V1, multiclass
        clus
vv       AMP PEAK 22(20P11.23) MUTATED AMP PEAK 22(20P11.23) WILD-TYPE
  CLUS_1                             2                              24
  CLUS_2                            19                              55
  CLUS_3                             4                              42
  CLUS_4                            13                              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20P11.23) MUTATED       16      8     11      2
  AMP PEAK 22(20P11.23) WILD-TYPE     29     41     41     35
D22V2, multiclass
        clus
vv       AMP PEAK 22(20P11.23) MUTATED AMP PEAK 22(20P11.23) WILD-TYPE
  CLUS_1                            16                              29
  CLUS_2                             8                              41
  CLUS_3                            11                              41
  CLUS_4                             2                              35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(20P11.23) MUTATED       14      4      2      1      6
  AMP PEAK 22(20P11.23) WILD-TYPE     25     21     18     14     17
D22V3, multiclass
        clus
vv       AMP PEAK 22(20P11.23) MUTATED AMP PEAK 22(20P11.23) WILD-TYPE
  CLUS_1                            14                              25
  CLUS_2                             4                              21
  CLUS_3                             2                              18
  CLUS_4                             1                              14
  CLUS_5                             6                              17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(20P11.23) MUTATED       12      5      0      4      6
  AMP PEAK 22(20P11.23) WILD-TYPE     35     20     16     12     12
D22V4, multiclass
        clus
vv       AMP PEAK 22(20P11.23) MUTATED AMP PEAK 22(20P11.23) WILD-TYPE
  CLUS_1                            12                              35
  CLUS_2                             5                              20
  CLUS_3                             0                              16
  CLUS_4                             4                              12
  CLUS_5                             6                              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(20P11.23) MUTATED       11      8     11      4      3
  AMP PEAK 22(20P11.23) WILD-TYPE     28     18     32     35     27
D22V5, multiclass
        clus
vv       AMP PEAK 22(20P11.23) MUTATED AMP PEAK 22(20P11.23) WILD-TYPE
  CLUS_1                            11                              28
  CLUS_2                             8                              18
  CLUS_3                            11                              32
  CLUS_4                             4                              35
  CLUS_5                             3                              27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20P11.23) MUTATED       12     19      6
  AMP PEAK 22(20P11.23) WILD-TYPE     62     56     22
D22V6, multiclass
        clus
vv       AMP PEAK 22(20P11.23) MUTATED AMP PEAK 22(20P11.23) WILD-TYPE
  CLUS_1                            12                              62
  CLUS_2                            19                              56
  CLUS_3                             6                              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(20P11.23) MUTATED       13      6      3     12      3
  AMP PEAK 22(20P11.23) WILD-TYPE     39     41     22     19     19
D22V7, multiclass
        clus
vv       AMP PEAK 22(20P11.23) MUTATED AMP PEAK 22(20P11.23) WILD-TYPE
  CLUS_1                            13                              39
  CLUS_2                             6                              41
  CLUS_3                             3                              22
  CLUS_4                            12                              19
  CLUS_5                             3                              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20P11.23) MUTATED       27      3      7
  AMP PEAK 22(20P11.23) WILD-TYPE     75     39     26
D22V8, multiclass
        clus
vv       AMP PEAK 22(20P11.23) MUTATED AMP PEAK 22(20P11.23) WILD-TYPE
  CLUS_1                            27                              75
  CLUS_2                             3                              39
  CLUS_3                             7                              26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(20P11.23) MUTATED        4      2      3      1     15      5
  AMP PEAK 22(20P11.23) WILD-TYPE     23      9     24     12     36     22
                                 vv
clus                              CLUS_7
  AMP PEAK 22(20P11.23) MUTATED        6
  AMP PEAK 22(20P11.23) WILD-TYPE     11
D22V9, multiclass
        clus
vv       AMP PEAK 22(20P11.23) MUTATED AMP PEAK 22(20P11.23) WILD-TYPE
  CLUS_1                             4                              23
  CLUS_2                             2                               9
  CLUS_3                             3                              24
  CLUS_4                             1                              12
  CLUS_5                            15                              36
  CLUS_6                             5                              22
  CLUS_7                             6                              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(20P11.23) MUTATED        3     12      7      7      2      5
  AMP PEAK 22(20P11.23) WILD-TYPE     20     32     12     46     24      3
D22V10, multiclass
        clus
vv       AMP PEAK 22(20P11.23) MUTATED AMP PEAK 22(20P11.23) WILD-TYPE
  CLUS_1                             3                              20
  CLUS_2                            12                              32
  CLUS_3                             7                              12
  CLUS_4                             7                              46
  CLUS_5                             2                              24
  CLUS_6                             5                               3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(XQ28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(XQ28) MUTATED        0     14      1      5
  AMP PEAK 23(XQ28) WILD-TYPE     26     60     45     33
D23V1, multiclass
        clus
vv       AMP PEAK 23(XQ28) MUTATED AMP PEAK 23(XQ28) WILD-TYPE
  CLUS_1                         0                          26
  CLUS_2                        14                          60
  CLUS_3                         1                          45
  CLUS_4                         5                          33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(XQ28) MUTATED        4      8      6      2
  AMP PEAK 23(XQ28) WILD-TYPE     41     41     46     35
D23V2, multiclass
        clus
vv       AMP PEAK 23(XQ28) MUTATED AMP PEAK 23(XQ28) WILD-TYPE
  CLUS_1                         4                          41
  CLUS_2                         8                          41
  CLUS_3                         6                          46
  CLUS_4                         2                          35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(XQ28) MUTATED        5      0      1      2      3
  AMP PEAK 23(XQ28) WILD-TYPE     34     25     19     13     20
D23V3, multiclass
        clus
vv       AMP PEAK 23(XQ28) MUTATED AMP PEAK 23(XQ28) WILD-TYPE
  CLUS_1                         5                          34
  CLUS_2                         0                          25
  CLUS_3                         1                          19
  CLUS_4                         2                          13
  CLUS_5                         3                          20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(XQ28) MUTATED        4      1      0      4      2
  AMP PEAK 23(XQ28) WILD-TYPE     43     24     16     12     16
D23V4, multiclass
        clus
vv       AMP PEAK 23(XQ28) MUTATED AMP PEAK 23(XQ28) WILD-TYPE
  CLUS_1                         4                          43
  CLUS_2                         1                          24
  CLUS_3                         0                          16
  CLUS_4                         4                          12
  CLUS_5                         2                          16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(XQ28) MUTATED        4      6      4      5      1
  AMP PEAK 23(XQ28) WILD-TYPE     35     20     39     34     29
D23V5, multiclass
        clus
vv       AMP PEAK 23(XQ28) MUTATED AMP PEAK 23(XQ28) WILD-TYPE
  CLUS_1                         4                          35
  CLUS_2                         6                          20
  CLUS_3                         4                          39
  CLUS_4                         5                          34
  CLUS_5                         1                          29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(XQ28) MUTATED        7      7      6
  AMP PEAK 23(XQ28) WILD-TYPE     67     68     22
D23V6, multiclass
        clus
vv       AMP PEAK 23(XQ28) MUTATED AMP PEAK 23(XQ28) WILD-TYPE
  CLUS_1                         7                          67
  CLUS_2                         7                          68
  CLUS_3                         6                          22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(XQ28) MUTATED        9      1      3      5      2
  AMP PEAK 23(XQ28) WILD-TYPE     43     46     22     26     20
D23V7, multiclass
        clus
vv       AMP PEAK 23(XQ28) MUTATED AMP PEAK 23(XQ28) WILD-TYPE
  CLUS_1                         9                          43
  CLUS_2                         1                          46
  CLUS_3                         3                          22
  CLUS_4                         5                          26
  CLUS_5                         2                          20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(XQ28) MUTATED        9      5      6
  AMP PEAK 23(XQ28) WILD-TYPE     93     37     27
D23V8, multiclass
        clus
vv       AMP PEAK 23(XQ28) MUTATED AMP PEAK 23(XQ28) WILD-TYPE
  CLUS_1                         9                          93
  CLUS_2                         5                          37
  CLUS_3                         6                          27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 23(XQ28) MUTATED        2      1      3      1      8      0      5
  AMP PEAK 23(XQ28) WILD-TYPE     25     10     24     12     43     27     12
D23V9, multiclass
        clus
vv       AMP PEAK 23(XQ28) MUTATED AMP PEAK 23(XQ28) WILD-TYPE
  CLUS_1                         2                          25
  CLUS_2                         1                          10
  CLUS_3                         3                          24
  CLUS_4                         1                          12
  CLUS_5                         8                          43
  CLUS_6                         0                          27
  CLUS_7                         5                          12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(XQ28) MUTATED        3      6      0      5      2      4
  AMP PEAK 23(XQ28) WILD-TYPE     20     38     19     48     24      4
D23V10, multiclass
        clus
vv       AMP PEAK 23(XQ28) MUTATED AMP PEAK 23(XQ28) WILD-TYPE
  CLUS_1                         3                          20
  CLUS_2                         6                          38
  CLUS_3                         0                          19
  CLUS_4                         5                          48
  CLUS_5                         2                          24
  CLUS_6                         4                           4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = DEL PEAK  1(1P36.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED        8     40      6     14
  DEL PEAK  1(1P36.11) WILD-TYPE     18     34     40     24
D24V1, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            8                             18
  CLUS_2                           40                             34
  CLUS_3                            6                             40
  CLUS_4                           14                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       33     15     18      2
  DEL PEAK  1(1P36.11) WILD-TYPE     12     34     34     35
D24V2, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           33                             12
  CLUS_2                           15                             34
  CLUS_3                           18                             34
  CLUS_4                            2                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED       24      6      9      4      7
  DEL PEAK  1(1P36.11) WILD-TYPE     15     19     11     11     16
D24V3, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           24                             15
  CLUS_2                            6                             19
  CLUS_3                            9                             11
  CLUS_4                            4                             11
  CLUS_5                            7                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED       25      8      6      6      5
  DEL PEAK  1(1P36.11) WILD-TYPE     22     17     10     10     13
D24V4, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           25                             22
  CLUS_2                            8                             17
  CLUS_3                            6                             10
  CLUS_4                            6                             10
  CLUS_5                            5                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED       23      9     15     15      2
  DEL PEAK  1(1P36.11) WILD-TYPE     16     17     28     24     28
D24V5, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           23                             16
  CLUS_2                            9                             17
  CLUS_3                           15                             28
  CLUS_4                           15                             24
  CLUS_5                            2                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       27     33      4
  DEL PEAK  1(1P36.11) WILD-TYPE     47     42     24
D24V6, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           27                             47
  CLUS_2                           33                             42
  CLUS_3                            4                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED       24     11     10     12      7
  DEL PEAK  1(1P36.11) WILD-TYPE     28     36     15     19     15
D24V7, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           24                             28
  CLUS_2                           11                             36
  CLUS_3                           10                             15
  CLUS_4                           12                             19
  CLUS_5                            7                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       43     14      7
  DEL PEAK  1(1P36.11) WILD-TYPE     59     28     26
D24V8, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           43                             59
  CLUS_2                           14                             28
  CLUS_3                            7                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.11) MUTATED       10      3      8      1     26      9
  DEL PEAK  1(1P36.11) WILD-TYPE     17      8     19     12     25     18
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.11) MUTATED        5
  DEL PEAK  1(1P36.11) WILD-TYPE     12
D24V9, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           10                             17
  CLUS_2                            3                              8
  CLUS_3                            8                             19
  CLUS_4                            1                             12
  CLUS_5                           26                             25
  CLUS_6                            9                             18
  CLUS_7                            5                             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.11) MUTATED       11     18      6     21      4      2
  DEL PEAK  1(1P36.11) WILD-TYPE     12     26     13     32     22      6
D24V10, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           11                             12
  CLUS_2                           18                             26
  CLUS_3                            6                             13
  CLUS_4                           21                             32
  CLUS_5                            4                             22
  CLUS_6                            2                              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = DEL PEAK  2(2Q14.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(2Q14.3) MUTATED        2      5      0      2
  DEL PEAK  2(2Q14.3) WILD-TYPE     24     69     46     36
D25V1, multiclass
        clus
vv       DEL PEAK  2(2Q14.3) MUTATED DEL PEAK  2(2Q14.3) WILD-TYPE
  CLUS_1                           2                            24
  CLUS_2                           5                            69
  CLUS_3                           0                            46
  CLUS_4                           2                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(2Q14.3) MUTATED        1      3      5      0
  DEL PEAK  2(2Q14.3) WILD-TYPE     44     46     47     37
D25V2, multiclass
        clus
vv       DEL PEAK  2(2Q14.3) MUTATED DEL PEAK  2(2Q14.3) WILD-TYPE
  CLUS_1                           1                            44
  CLUS_2                           3                            46
  CLUS_3                           5                            47
  CLUS_4                           0                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(2Q14.3) MUTATED        3      0      0      0      0
  DEL PEAK  2(2Q14.3) WILD-TYPE     36     25     20     15     23
D25V3, multiclass
        clus
vv       DEL PEAK  2(2Q14.3) MUTATED DEL PEAK  2(2Q14.3) WILD-TYPE
  CLUS_1                           3                            36
  CLUS_2                           0                            25
  CLUS_3                           0                            20
  CLUS_4                           0                            15
  CLUS_5                           0                            23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(2Q14.3) MUTATED        1      0      0      2      0
  DEL PEAK  2(2Q14.3) WILD-TYPE     46     25     16     14     18
D25V4, multiclass
        clus
vv       DEL PEAK  2(2Q14.3) MUTATED DEL PEAK  2(2Q14.3) WILD-TYPE
  CLUS_1                           1                            46
  CLUS_2                           0                            25
  CLUS_3                           0                            16
  CLUS_4                           2                            14
  CLUS_5                           0                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(2Q14.3) MUTATED        4      2      1      2      0
  DEL PEAK  2(2Q14.3) WILD-TYPE     35     24     42     37     30
D25V5, multiclass
        clus
vv       DEL PEAK  2(2Q14.3) MUTATED DEL PEAK  2(2Q14.3) WILD-TYPE
  CLUS_1                           4                            35
  CLUS_2                           2                            24
  CLUS_3                           1                            42
  CLUS_4                           2                            37
  CLUS_5                           0                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2Q14.3) MUTATED        2      5      2
  DEL PEAK  2(2Q14.3) WILD-TYPE     72     70     26
D25V6, multiclass
        clus
vv       DEL PEAK  2(2Q14.3) MUTATED DEL PEAK  2(2Q14.3) WILD-TYPE
  CLUS_1                           2                            72
  CLUS_2                           5                            70
  CLUS_3                           2                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(2Q14.3) MUTATED        2      0      0      7      0
  DEL PEAK  2(2Q14.3) WILD-TYPE     50     47     25     24     22
D25V7, multiclass
        clus
vv       DEL PEAK  2(2Q14.3) MUTATED DEL PEAK  2(2Q14.3) WILD-TYPE
  CLUS_1                           2                            50
  CLUS_2                           0                            47
  CLUS_3                           0                            25
  CLUS_4                           7                            24
  CLUS_5                           0                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2Q14.3) MUTATED        6      1      2
  DEL PEAK  2(2Q14.3) WILD-TYPE     96     41     31
D25V8, multiclass
        clus
vv       DEL PEAK  2(2Q14.3) MUTATED DEL PEAK  2(2Q14.3) WILD-TYPE
  CLUS_1                           6                            96
  CLUS_2                           1                            41
  CLUS_3                           2                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(2Q14.3) MUTATED        1      1      1      0      4      0
  DEL PEAK  2(2Q14.3) WILD-TYPE     26     10     26     13     47     27
                               vv
clus                            CLUS_7
  DEL PEAK  2(2Q14.3) MUTATED        2
  DEL PEAK  2(2Q14.3) WILD-TYPE     15
D25V9, multiclass
        clus
vv       DEL PEAK  2(2Q14.3) MUTATED DEL PEAK  2(2Q14.3) WILD-TYPE
  CLUS_1                           1                            26
  CLUS_2                           1                            10
  CLUS_3                           1                            26
  CLUS_4                           0                            13
  CLUS_5                           4                            47
  CLUS_6                           0                            27
  CLUS_7                           2                            15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(2Q14.3) MUTATED        1      2      2      2      0      2
  DEL PEAK  2(2Q14.3) WILD-TYPE     22     42     17     51     26      6
D25V10, multiclass
        clus
vv       DEL PEAK  2(2Q14.3) MUTATED DEL PEAK  2(2Q14.3) WILD-TYPE
  CLUS_1                           1                            22
  CLUS_2                           2                            42
  CLUS_3                           2                            17
  CLUS_4                           2                            51
  CLUS_5                           0                            26
  CLUS_6                           2                             6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK  3(3P21.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(3P21.31) MUTATED       10     23      5     13
  DEL PEAK  3(3P21.31) WILD-TYPE     16     51     41     25
D26V1, multiclass
        clus
vv       DEL PEAK  3(3P21.31) MUTATED DEL PEAK  3(3P21.31) WILD-TYPE
  CLUS_1                           10                             16
  CLUS_2                           23                             51
  CLUS_3                            5                             41
  CLUS_4                           13                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(3P21.31) MUTATED       18     10     19      4
  DEL PEAK  3(3P21.31) WILD-TYPE     27     39     33     33
D26V2, multiclass
        clus
vv       DEL PEAK  3(3P21.31) MUTATED DEL PEAK  3(3P21.31) WILD-TYPE
  CLUS_1                           18                             27
  CLUS_2                           10                             39
  CLUS_3                           19                             33
  CLUS_4                            4                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(3P21.31) MUTATED       17      6      7      2      8
  DEL PEAK  3(3P21.31) WILD-TYPE     22     19     13     13     15
D26V3, multiclass
        clus
vv       DEL PEAK  3(3P21.31) MUTATED DEL PEAK  3(3P21.31) WILD-TYPE
  CLUS_1                           17                             22
  CLUS_2                            6                             19
  CLUS_3                            7                             13
  CLUS_4                            2                             13
  CLUS_5                            8                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(3P21.31) MUTATED       15      8      4      4      9
  DEL PEAK  3(3P21.31) WILD-TYPE     32     17     12     12      9
D26V4, multiclass
        clus
vv       DEL PEAK  3(3P21.31) MUTATED DEL PEAK  3(3P21.31) WILD-TYPE
  CLUS_1                           15                             32
  CLUS_2                            8                             17
  CLUS_3                            4                             12
  CLUS_4                            4                             12
  CLUS_5                            9                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(3P21.31) MUTATED       16      5     18      7      3
  DEL PEAK  3(3P21.31) WILD-TYPE     23     21     25     32     27
D26V5, multiclass
        clus
vv       DEL PEAK  3(3P21.31) MUTATED DEL PEAK  3(3P21.31) WILD-TYPE
  CLUS_1                           16                             23
  CLUS_2                            5                             21
  CLUS_3                           18                             25
  CLUS_4                            7                             32
  CLUS_5                            3                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(3P21.31) MUTATED       19     23      7
  DEL PEAK  3(3P21.31) WILD-TYPE     55     52     21
D26V6, multiclass
        clus
vv       DEL PEAK  3(3P21.31) MUTATED DEL PEAK  3(3P21.31) WILD-TYPE
  CLUS_1                           19                             55
  CLUS_2                           23                             52
  CLUS_3                            7                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(3P21.31) MUTATED       21      8      5      8      7
  DEL PEAK  3(3P21.31) WILD-TYPE     31     39     20     23     15
D26V7, multiclass
        clus
vv       DEL PEAK  3(3P21.31) MUTATED DEL PEAK  3(3P21.31) WILD-TYPE
  CLUS_1                           21                             31
  CLUS_2                            8                             39
  CLUS_3                            5                             20
  CLUS_4                            8                             23
  CLUS_5                            7                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(3P21.31) MUTATED       35      6      8
  DEL PEAK  3(3P21.31) WILD-TYPE     67     36     25
D26V8, multiclass
        clus
vv       DEL PEAK  3(3P21.31) MUTATED DEL PEAK  3(3P21.31) WILD-TYPE
  CLUS_1                           35                             67
  CLUS_2                            6                             36
  CLUS_3                            8                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(3P21.31) MUTATED        5      3      7      2     19      8
  DEL PEAK  3(3P21.31) WILD-TYPE     22      8     20     11     32     19
                                vv
clus                             CLUS_7
  DEL PEAK  3(3P21.31) MUTATED        4
  DEL PEAK  3(3P21.31) WILD-TYPE     13
D26V9, multiclass
        clus
vv       DEL PEAK  3(3P21.31) MUTATED DEL PEAK  3(3P21.31) WILD-TYPE
  CLUS_1                            5                             22
  CLUS_2                            3                              8
  CLUS_3                            7                             20
  CLUS_4                            2                             11
  CLUS_5                           19                             32
  CLUS_6                            8                             19
  CLUS_7                            4                             13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(3P21.31) MUTATED        9     18      3     10      6      2
  DEL PEAK  3(3P21.31) WILD-TYPE     14     26     16     43     20      6
D26V10, multiclass
        clus
vv       DEL PEAK  3(3P21.31) MUTATED DEL PEAK  3(3P21.31) WILD-TYPE
  CLUS_1                            9                             14
  CLUS_2                           18                             26
  CLUS_3                            3                             16
  CLUS_4                           10                             43
  CLUS_5                            6                             20
  CLUS_6                            2                              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK  4(4Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(4Q22.1) MUTATED        2     15      5      5
  DEL PEAK  4(4Q22.1) WILD-TYPE     24     59     41     33
D27V1, multiclass
        clus
vv       DEL PEAK  4(4Q22.1) MUTATED DEL PEAK  4(4Q22.1) WILD-TYPE
  CLUS_1                           2                            24
  CLUS_2                          15                            59
  CLUS_3                           5                            41
  CLUS_4                           5                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(4Q22.1) MUTATED       11      1      9      6
  DEL PEAK  4(4Q22.1) WILD-TYPE     34     48     43     31
D27V2, multiclass
        clus
vv       DEL PEAK  4(4Q22.1) MUTATED DEL PEAK  4(4Q22.1) WILD-TYPE
  CLUS_1                          11                            34
  CLUS_2                           1                            48
  CLUS_3                           9                            43
  CLUS_4                           6                            31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(4Q22.1) MUTATED        6      3      5      0      3
  DEL PEAK  4(4Q22.1) WILD-TYPE     33     22     15     15     20
D27V3, multiclass
        clus
vv       DEL PEAK  4(4Q22.1) MUTATED DEL PEAK  4(4Q22.1) WILD-TYPE
  CLUS_1                           6                            33
  CLUS_2                           3                            22
  CLUS_3                           5                            15
  CLUS_4                           0                            15
  CLUS_5                           3                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(4Q22.1) MUTATED        7      2      3      0      5
  DEL PEAK  4(4Q22.1) WILD-TYPE     40     23     13     16     13
D27V4, multiclass
        clus
vv       DEL PEAK  4(4Q22.1) MUTATED DEL PEAK  4(4Q22.1) WILD-TYPE
  CLUS_1                           7                            40
  CLUS_2                           2                            23
  CLUS_3                           3                            13
  CLUS_4                           0                            16
  CLUS_5                           5                            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(4Q22.1) MUTATED        6      3     10      0      7
  DEL PEAK  4(4Q22.1) WILD-TYPE     33     23     33     39     23
D27V5, multiclass
        clus
vv       DEL PEAK  4(4Q22.1) MUTATED DEL PEAK  4(4Q22.1) WILD-TYPE
  CLUS_1                           6                            33
  CLUS_2                           3                            23
  CLUS_3                          10                            33
  CLUS_4                           0                            39
  CLUS_5                           7                            23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(4Q22.1) MUTATED        6     15      5
  DEL PEAK  4(4Q22.1) WILD-TYPE     68     60     23
D27V6, multiclass
        clus
vv       DEL PEAK  4(4Q22.1) MUTATED DEL PEAK  4(4Q22.1) WILD-TYPE
  CLUS_1                           6                            68
  CLUS_2                          15                            60
  CLUS_3                           5                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(4Q22.1) MUTATED        7      9      1      4      5
  DEL PEAK  4(4Q22.1) WILD-TYPE     45     38     24     27     17
D27V7, multiclass
        clus
vv       DEL PEAK  4(4Q22.1) MUTATED DEL PEAK  4(4Q22.1) WILD-TYPE
  CLUS_1                           7                            45
  CLUS_2                           9                            38
  CLUS_3                           1                            24
  CLUS_4                           4                            27
  CLUS_5                           5                            17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(4Q22.1) MUTATED       19      0      7
  DEL PEAK  4(4Q22.1) WILD-TYPE     83     42     26
D27V8, multiclass
        clus
vv       DEL PEAK  4(4Q22.1) MUTATED DEL PEAK  4(4Q22.1) WILD-TYPE
  CLUS_1                          19                            83
  CLUS_2                           0                            42
  CLUS_3                           7                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(4Q22.1) MUTATED        0      1      4      3      9      6
  DEL PEAK  4(4Q22.1) WILD-TYPE     27     10     23     10     42     21
                               vv
clus                            CLUS_7
  DEL PEAK  4(4Q22.1) MUTATED        2
  DEL PEAK  4(4Q22.1) WILD-TYPE     15
D27V9, multiclass
        clus
vv       DEL PEAK  4(4Q22.1) MUTATED DEL PEAK  4(4Q22.1) WILD-TYPE
  CLUS_1                           0                            27
  CLUS_2                           1                            10
  CLUS_3                           4                            23
  CLUS_4                           3                            10
  CLUS_5                           9                            42
  CLUS_6                           6                            21
  CLUS_7                           2                            15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(4Q22.1) MUTATED        3      9      5      2      6      0
  DEL PEAK  4(4Q22.1) WILD-TYPE     20     35     14     51     20      8
D27V10, multiclass
        clus
vv       DEL PEAK  4(4Q22.1) MUTATED DEL PEAK  4(4Q22.1) WILD-TYPE
  CLUS_1                           3                            20
  CLUS_2                           9                            35
  CLUS_3                           5                            14
  CLUS_4                           2                            51
  CLUS_5                           6                            20
  CLUS_6                           0                             8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK  5(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4Q34.3) MUTATED        2     22      5      6
  DEL PEAK  5(4Q34.3) WILD-TYPE     24     52     41     32
D28V1, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                           2                            24
  CLUS_2                          22                            52
  CLUS_3                           5                            41
  CLUS_4                           6                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4Q34.3) MUTATED       12      4     14      5
  DEL PEAK  5(4Q34.3) WILD-TYPE     33     45     38     32
D28V2, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                          12                            33
  CLUS_2                           4                            45
  CLUS_3                          14                            38
  CLUS_4                           5                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(4Q34.3) MUTATED        9      4      7      0      4
  DEL PEAK  5(4Q34.3) WILD-TYPE     30     21     13     15     19
D28V3, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                           9                            30
  CLUS_2                           4                            21
  CLUS_3                           7                            13
  CLUS_4                           0                            15
  CLUS_5                           4                            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(4Q34.3) MUTATED       10      3      5      0      6
  DEL PEAK  5(4Q34.3) WILD-TYPE     37     22     11     16     12
D28V4, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                          10                            37
  CLUS_2                           3                            22
  CLUS_3                           5                            11
  CLUS_4                           0                            16
  CLUS_5                           6                            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(4Q34.3) MUTATED        7      4     14      3      6
  DEL PEAK  5(4Q34.3) WILD-TYPE     32     22     29     36     24
D28V5, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                           7                            32
  CLUS_2                           4                            22
  CLUS_3                          14                            29
  CLUS_4                           3                            36
  CLUS_5                           6                            24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(4Q34.3) MUTATED       12     17      5
  DEL PEAK  5(4Q34.3) WILD-TYPE     62     58     23
D28V6, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                          12                            62
  CLUS_2                          17                            58
  CLUS_3                           5                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(4Q34.3) MUTATED        9     11      5      4      5
  DEL PEAK  5(4Q34.3) WILD-TYPE     43     36     20     27     17
D28V7, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                           9                            43
  CLUS_2                          11                            36
  CLUS_3                           5                            20
  CLUS_4                           4                            27
  CLUS_5                           5                            17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(4Q34.3) MUTATED       23      4      7
  DEL PEAK  5(4Q34.3) WILD-TYPE     79     38     26
D28V8, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                          23                            79
  CLUS_2                           4                            38
  CLUS_3                           7                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(4Q34.3) MUTATED        2      3      5      2     11      8
  DEL PEAK  5(4Q34.3) WILD-TYPE     25      8     22     11     40     19
                               vv
clus                            CLUS_7
  DEL PEAK  5(4Q34.3) MUTATED        2
  DEL PEAK  5(4Q34.3) WILD-TYPE     15
D28V9, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                           2                            25
  CLUS_2                           3                             8
  CLUS_3                           5                            22
  CLUS_4                           2                            11
  CLUS_5                          11                            40
  CLUS_6                           8                            19
  CLUS_7                           2                            15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(4Q34.3) MUTATED        3     13      5      6      6      0
  DEL PEAK  5(4Q34.3) WILD-TYPE     20     31     14     47     20      8
D28V10, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                           3                            20
  CLUS_2                          13                            31
  CLUS_3                           5                            14
  CLUS_4                           6                            47
  CLUS_5                           6                            20
  CLUS_6                           0                             8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK  6(5Q14.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(5Q14.2) MUTATED        5     23      2      5
  DEL PEAK  6(5Q14.2) WILD-TYPE     21     51     44     33
D29V1, multiclass
        clus
vv       DEL PEAK  6(5Q14.2) MUTATED DEL PEAK  6(5Q14.2) WILD-TYPE
  CLUS_1                           5                            21
  CLUS_2                          23                            51
  CLUS_3                           2                            44
  CLUS_4                           5                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(5Q14.2) MUTATED        8      7     16      4
  DEL PEAK  6(5Q14.2) WILD-TYPE     37     42     36     33
D29V2, multiclass
        clus
vv       DEL PEAK  6(5Q14.2) MUTATED DEL PEAK  6(5Q14.2) WILD-TYPE
  CLUS_1                           8                            37
  CLUS_2                           7                            42
  CLUS_3                          16                            36
  CLUS_4                           4                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(5Q14.2) MUTATED       10      5      2      1      7
  DEL PEAK  6(5Q14.2) WILD-TYPE     29     20     18     14     16
D29V3, multiclass
        clus
vv       DEL PEAK  6(5Q14.2) MUTATED DEL PEAK  6(5Q14.2) WILD-TYPE
  CLUS_1                          10                            29
  CLUS_2                           5                            20
  CLUS_3                           2                            18
  CLUS_4                           1                            14
  CLUS_5                           7                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(5Q14.2) MUTATED        9      4      2      2      8
  DEL PEAK  6(5Q14.2) WILD-TYPE     38     21     14     14     10
D29V4, multiclass
        clus
vv       DEL PEAK  6(5Q14.2) MUTATED DEL PEAK  6(5Q14.2) WILD-TYPE
  CLUS_1                           9                            38
  CLUS_2                           4                            21
  CLUS_3                           2                            14
  CLUS_4                           2                            14
  CLUS_5                           8                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(5Q14.2) MUTATED        7      0     16      7      4
  DEL PEAK  6(5Q14.2) WILD-TYPE     32     26     27     32     26
D29V5, multiclass
        clus
vv       DEL PEAK  6(5Q14.2) MUTATED DEL PEAK  6(5Q14.2) WILD-TYPE
  CLUS_1                           7                            32
  CLUS_2                           0                            26
  CLUS_3                          16                            27
  CLUS_4                           7                            32
  CLUS_5                           4                            26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(5Q14.2) MUTATED       16     16      2
  DEL PEAK  6(5Q14.2) WILD-TYPE     58     59     26
D29V6, multiclass
        clus
vv       DEL PEAK  6(5Q14.2) MUTATED DEL PEAK  6(5Q14.2) WILD-TYPE
  CLUS_1                          16                            58
  CLUS_2                          16                            59
  CLUS_3                           2                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(5Q14.2) MUTATED       13      8      6      6      1
  DEL PEAK  6(5Q14.2) WILD-TYPE     39     39     19     25     21
D29V7, multiclass
        clus
vv       DEL PEAK  6(5Q14.2) MUTATED DEL PEAK  6(5Q14.2) WILD-TYPE
  CLUS_1                          13                            39
  CLUS_2                           8                            39
  CLUS_3                           6                            19
  CLUS_4                           6                            25
  CLUS_5                           1                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(5Q14.2) MUTATED       24      7      3
  DEL PEAK  6(5Q14.2) WILD-TYPE     78     35     30
D29V8, multiclass
        clus
vv       DEL PEAK  6(5Q14.2) MUTATED DEL PEAK  6(5Q14.2) WILD-TYPE
  CLUS_1                          24                            78
  CLUS_2                           7                            35
  CLUS_3                           3                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(5Q14.2) MUTATED        2      1      6      2     16      3
  DEL PEAK  6(5Q14.2) WILD-TYPE     25     10     21     11     35     24
                               vv
clus                            CLUS_7
  DEL PEAK  6(5Q14.2) MUTATED        2
  DEL PEAK  6(5Q14.2) WILD-TYPE     15
D29V9, multiclass
        clus
vv       DEL PEAK  6(5Q14.2) MUTATED DEL PEAK  6(5Q14.2) WILD-TYPE
  CLUS_1                           2                            25
  CLUS_2                           1                            10
  CLUS_3                           6                            21
  CLUS_4                           2                            11
  CLUS_5                          16                            35
  CLUS_6                           3                            24
  CLUS_7                           2                            15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(5Q14.2) MUTATED        4     14      2      9      3      0
  DEL PEAK  6(5Q14.2) WILD-TYPE     19     30     17     44     23      8
D29V10, multiclass
        clus
vv       DEL PEAK  6(5Q14.2) MUTATED DEL PEAK  6(5Q14.2) WILD-TYPE
  CLUS_1                           4                            19
  CLUS_2                          14                            30
  CLUS_3                           2                            17
  CLUS_4                           9                            44
  CLUS_5                           3                            23
  CLUS_6                           0                             8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  7(6P25.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(6P25.2) MUTATED       17     38      0     19
  DEL PEAK  7(6P25.2) WILD-TYPE      9     36     46     19
D30V1, multiclass
        clus
vv       DEL PEAK  7(6P25.2) MUTATED DEL PEAK  7(6P25.2) WILD-TYPE
  CLUS_1                          17                             9
  CLUS_2                          38                            36
  CLUS_3                           0                            46
  CLUS_4                          19                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(6P25.2) MUTATED       25     11     31      6
  DEL PEAK  7(6P25.2) WILD-TYPE     20     38     21     31
D30V2, multiclass
        clus
vv       DEL PEAK  7(6P25.2) MUTATED DEL PEAK  7(6P25.2) WILD-TYPE
  CLUS_1                          25                            20
  CLUS_2                          11                            38
  CLUS_3                          31                            21
  CLUS_4                           6                            31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(6P25.2) MUTATED       26      5      8      4      8
  DEL PEAK  7(6P25.2) WILD-TYPE     13     20     12     11     15
D30V3, multiclass
        clus
vv       DEL PEAK  7(6P25.2) MUTATED DEL PEAK  7(6P25.2) WILD-TYPE
  CLUS_1                          26                            13
  CLUS_2                           5                            20
  CLUS_3                           8                            12
  CLUS_4                           4                            11
  CLUS_5                           8                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(6P25.2) MUTATED       26      7      5      6      7
  DEL PEAK  7(6P25.2) WILD-TYPE     21     18     11     10     11
D30V4, multiclass
        clus
vv       DEL PEAK  7(6P25.2) MUTATED DEL PEAK  7(6P25.2) WILD-TYPE
  CLUS_1                          26                            21
  CLUS_2                           7                            18
  CLUS_3                           5                            11
  CLUS_4                           6                            10
  CLUS_5                           7                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(6P25.2) MUTATED       21      8     24     11      6
  DEL PEAK  7(6P25.2) WILD-TYPE     18     18     19     28     24
D30V5, multiclass
        clus
vv       DEL PEAK  7(6P25.2) MUTATED DEL PEAK  7(6P25.2) WILD-TYPE
  CLUS_1                          21                            18
  CLUS_2                           8                            18
  CLUS_3                          24                            19
  CLUS_4                          11                            28
  CLUS_5                           6                            24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(6P25.2) MUTATED       28     37      5
  DEL PEAK  7(6P25.2) WILD-TYPE     46     38     23
D30V6, multiclass
        clus
vv       DEL PEAK  7(6P25.2) MUTATED DEL PEAK  7(6P25.2) WILD-TYPE
  CLUS_1                          28                            46
  CLUS_2                          37                            38
  CLUS_3                           5                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(6P25.2) MUTATED       28     14     10     13      5
  DEL PEAK  7(6P25.2) WILD-TYPE     24     33     15     18     17
D30V7, multiclass
        clus
vv       DEL PEAK  7(6P25.2) MUTATED DEL PEAK  7(6P25.2) WILD-TYPE
  CLUS_1                          28                            24
  CLUS_2                          14                            33
  CLUS_3                          10                            15
  CLUS_4                          13                            18
  CLUS_5                           5                            17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(6P25.2) MUTATED       53     10      7
  DEL PEAK  7(6P25.2) WILD-TYPE     49     32     26
D30V8, multiclass
        clus
vv       DEL PEAK  7(6P25.2) MUTATED DEL PEAK  7(6P25.2) WILD-TYPE
  CLUS_1                          53                            49
  CLUS_2                          10                            32
  CLUS_3                           7                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(6P25.2) MUTATED       10      6      8      3     28      9
  DEL PEAK  7(6P25.2) WILD-TYPE     17      5     19     10     23     18
                               vv
clus                            CLUS_7
  DEL PEAK  7(6P25.2) MUTATED        6
  DEL PEAK  7(6P25.2) WILD-TYPE     11
D30V9, multiclass
        clus
vv       DEL PEAK  7(6P25.2) MUTATED DEL PEAK  7(6P25.2) WILD-TYPE
  CLUS_1                          10                            17
  CLUS_2                           6                             5
  CLUS_3                           8                            19
  CLUS_4                           3                            10
  CLUS_5                          28                            23
  CLUS_6                           9                            18
  CLUS_7                           6                            11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(6P25.2) MUTATED       13     26      7     18      3      3
  DEL PEAK  7(6P25.2) WILD-TYPE     10     18     12     35     23      5
D30V10, multiclass
        clus
vv       DEL PEAK  7(6P25.2) MUTATED DEL PEAK  7(6P25.2) WILD-TYPE
  CLUS_1                          13                            10
  CLUS_2                          26                            18
  CLUS_3                           7                            12
  CLUS_4                          18                            35
  CLUS_5                           3                            23
  CLUS_6                           3                             5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  8(6P22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6P22.2) MUTATED       14     36      0     20
  DEL PEAK  8(6P22.2) WILD-TYPE     12     38     46     18
D31V1, multiclass
        clus
vv       DEL PEAK  8(6P22.2) MUTATED DEL PEAK  8(6P22.2) WILD-TYPE
  CLUS_1                          14                            12
  CLUS_2                          36                            38
  CLUS_3                           0                            46
  CLUS_4                          20                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6P22.2) MUTATED       23     10     30      6
  DEL PEAK  8(6P22.2) WILD-TYPE     22     39     22     31
D31V2, multiclass
        clus
vv       DEL PEAK  8(6P22.2) MUTATED DEL PEAK  8(6P22.2) WILD-TYPE
  CLUS_1                          23                            22
  CLUS_2                          10                            39
  CLUS_3                          30                            22
  CLUS_4                           6                            31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(6P22.2) MUTATED       23      6      8      4      7
  DEL PEAK  8(6P22.2) WILD-TYPE     16     19     12     11     16
D31V3, multiclass
        clus
vv       DEL PEAK  8(6P22.2) MUTATED DEL PEAK  8(6P22.2) WILD-TYPE
  CLUS_1                          23                            16
  CLUS_2                           6                            19
  CLUS_3                           8                            12
  CLUS_4                           4                            11
  CLUS_5                           7                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(6P22.2) MUTATED       23      8      5      6      6
  DEL PEAK  8(6P22.2) WILD-TYPE     24     17     11     10     12
D31V4, multiclass
        clus
vv       DEL PEAK  8(6P22.2) MUTATED DEL PEAK  8(6P22.2) WILD-TYPE
  CLUS_1                          23                            24
  CLUS_2                           8                            17
  CLUS_3                           5                            11
  CLUS_4                           6                            10
  CLUS_5                           6                            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(6P22.2) MUTATED       17      8     25     10      6
  DEL PEAK  8(6P22.2) WILD-TYPE     22     18     18     29     24
D31V5, multiclass
        clus
vv       DEL PEAK  8(6P22.2) MUTATED DEL PEAK  8(6P22.2) WILD-TYPE
  CLUS_1                          17                            22
  CLUS_2                           8                            18
  CLUS_3                          25                            18
  CLUS_4                          10                            29
  CLUS_5                           6                            24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(6P22.2) MUTATED       26     35      5
  DEL PEAK  8(6P22.2) WILD-TYPE     48     40     23
D31V6, multiclass
        clus
vv       DEL PEAK  8(6P22.2) MUTATED DEL PEAK  8(6P22.2) WILD-TYPE
  CLUS_1                          26                            48
  CLUS_2                          35                            40
  CLUS_3                           5                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(6P22.2) MUTATED       25     15      9     13      4
  DEL PEAK  8(6P22.2) WILD-TYPE     27     32     16     18     18
D31V7, multiclass
        clus
vv       DEL PEAK  8(6P22.2) MUTATED DEL PEAK  8(6P22.2) WILD-TYPE
  CLUS_1                          25                            27
  CLUS_2                          15                            32
  CLUS_3                           9                            16
  CLUS_4                          13                            18
  CLUS_5                           4                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(6P22.2) MUTATED       50      9      7
  DEL PEAK  8(6P22.2) WILD-TYPE     52     33     26
D31V8, multiclass
        clus
vv       DEL PEAK  8(6P22.2) MUTATED DEL PEAK  8(6P22.2) WILD-TYPE
  CLUS_1                          50                            52
  CLUS_2                           9                            33
  CLUS_3                           7                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(6P22.2) MUTATED        9      6      8      3     26      8
  DEL PEAK  8(6P22.2) WILD-TYPE     18      5     19     10     25     19
                               vv
clus                            CLUS_7
  DEL PEAK  8(6P22.2) MUTATED        6
  DEL PEAK  8(6P22.2) WILD-TYPE     11
D31V9, multiclass
        clus
vv       DEL PEAK  8(6P22.2) MUTATED DEL PEAK  8(6P22.2) WILD-TYPE
  CLUS_1                           9                            18
  CLUS_2                           6                             5
  CLUS_3                           8                            19
  CLUS_4                           3                            10
  CLUS_5                          26                            25
  CLUS_6                           8                            19
  CLUS_7                           6                            11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(6P22.2) MUTATED       11     26      7     16      3      3
  DEL PEAK  8(6P22.2) WILD-TYPE     12     18     12     37     23      5
D31V10, multiclass
        clus
vv       DEL PEAK  8(6P22.2) MUTATED DEL PEAK  8(6P22.2) WILD-TYPE
  CLUS_1                          11                            12
  CLUS_2                          26                            18
  CLUS_3                           7                            12
  CLUS_4                          16                            37
  CLUS_5                           3                            23
  CLUS_6                           3                             5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK  9(6Q25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6Q25.3) MUTATED       18     48      0     25
  DEL PEAK  9(6Q25.3) WILD-TYPE      8     26     46     13
D32V1, multiclass
        clus
vv       DEL PEAK  9(6Q25.3) MUTATED DEL PEAK  9(6Q25.3) WILD-TYPE
  CLUS_1                          18                             8
  CLUS_2                          48                            26
  CLUS_3                           0                            46
  CLUS_4                          25                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6Q25.3) MUTATED       30     13     38      9
  DEL PEAK  9(6Q25.3) WILD-TYPE     15     36     14     28
D32V2, multiclass
        clus
vv       DEL PEAK  9(6Q25.3) MUTATED DEL PEAK  9(6Q25.3) WILD-TYPE
  CLUS_1                          30                            15
  CLUS_2                          13                            36
  CLUS_3                          38                            14
  CLUS_4                           9                            28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(6Q25.3) MUTATED       27      8     11      4     13
  DEL PEAK  9(6Q25.3) WILD-TYPE     12     17      9     11     10
D32V3, multiclass
        clus
vv       DEL PEAK  9(6Q25.3) MUTATED DEL PEAK  9(6Q25.3) WILD-TYPE
  CLUS_1                          27                            12
  CLUS_2                           8                            17
  CLUS_3                          11                             9
  CLUS_4                           4                            11
  CLUS_5                          13                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(6Q25.3) MUTATED       28     11      7      6     11
  DEL PEAK  9(6Q25.3) WILD-TYPE     19     14      9     10      7
D32V4, multiclass
        clus
vv       DEL PEAK  9(6Q25.3) MUTATED DEL PEAK  9(6Q25.3) WILD-TYPE
  CLUS_1                          28                            19
  CLUS_2                          11                            14
  CLUS_3                           7                             9
  CLUS_4                           6                            10
  CLUS_5                          11                             7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(6Q25.3) MUTATED       23      9     33     13      8
  DEL PEAK  9(6Q25.3) WILD-TYPE     16     17     10     26     22
D32V5, multiclass
        clus
vv       DEL PEAK  9(6Q25.3) MUTATED DEL PEAK  9(6Q25.3) WILD-TYPE
  CLUS_1                          23                            16
  CLUS_2                           9                            17
  CLUS_3                          33                            10
  CLUS_4                          13                            26
  CLUS_5                           8                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6Q25.3) MUTATED       34     45      7
  DEL PEAK  9(6Q25.3) WILD-TYPE     40     30     21
D32V6, multiclass
        clus
vv       DEL PEAK  9(6Q25.3) MUTATED DEL PEAK  9(6Q25.3) WILD-TYPE
  CLUS_1                          34                            40
  CLUS_2                          45                            30
  CLUS_3                           7                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(6Q25.3) MUTATED       36     18     11     15      6
  DEL PEAK  9(6Q25.3) WILD-TYPE     16     29     14     16     16
D32V7, multiclass
        clus
vv       DEL PEAK  9(6Q25.3) MUTATED DEL PEAK  9(6Q25.3) WILD-TYPE
  CLUS_1                          36                            16
  CLUS_2                          18                            29
  CLUS_3                          11                            14
  CLUS_4                          15                            16
  CLUS_5                           6                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6Q25.3) MUTATED       63     12     11
  DEL PEAK  9(6Q25.3) WILD-TYPE     39     30     22
D32V8, multiclass
        clus
vv       DEL PEAK  9(6Q25.3) MUTATED DEL PEAK  9(6Q25.3) WILD-TYPE
  CLUS_1                          63                            39
  CLUS_2                          12                            30
  CLUS_3                          11                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(6Q25.3) MUTATED       11      7     10      3     38     10
  DEL PEAK  9(6Q25.3) WILD-TYPE     16      4     17     10     13     17
                               vv
clus                            CLUS_7
  DEL PEAK  9(6Q25.3) MUTATED        6
  DEL PEAK  9(6Q25.3) WILD-TYPE     11
D32V9, multiclass
        clus
vv       DEL PEAK  9(6Q25.3) MUTATED DEL PEAK  9(6Q25.3) WILD-TYPE
  CLUS_1                          11                            16
  CLUS_2                           7                             4
  CLUS_3                          10                            17
  CLUS_4                           3                            10
  CLUS_5                          38                            13
  CLUS_6                          10                            17
  CLUS_7                           6                            11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(6Q25.3) MUTATED       13     30      9     24      6      3
  DEL PEAK  9(6Q25.3) WILD-TYPE     10     14     10     29     20      5
D32V10, multiclass
        clus
vv       DEL PEAK  9(6Q25.3) MUTATED DEL PEAK  9(6Q25.3) WILD-TYPE
  CLUS_1                          13                            10
  CLUS_2                          30                            14
  CLUS_3                           9                            10
  CLUS_4                          24                            29
  CLUS_5                           6                            20
  CLUS_6                           3                             5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK 10(7Q31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(7Q31.1) MUTATED        2      9      1      3
  DEL PEAK 10(7Q31.1) WILD-TYPE     24     65     45     35
D33V1, multiclass
        clus
vv       DEL PEAK 10(7Q31.1) MUTATED DEL PEAK 10(7Q31.1) WILD-TYPE
  CLUS_1                           2                            24
  CLUS_2                           9                            65
  CLUS_3                           1                            45
  CLUS_4                           3                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(7Q31.1) MUTATED        4      3      6      2
  DEL PEAK 10(7Q31.1) WILD-TYPE     41     46     46     35
D33V2, multiclass
        clus
vv       DEL PEAK 10(7Q31.1) MUTATED DEL PEAK 10(7Q31.1) WILD-TYPE
  CLUS_1                           4                            41
  CLUS_2                           3                            46
  CLUS_3                           6                            46
  CLUS_4                           2                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(7Q31.1) MUTATED        2      3      1      0      3
  DEL PEAK 10(7Q31.1) WILD-TYPE     37     22     19     15     20
D33V3, multiclass
        clus
vv       DEL PEAK 10(7Q31.1) MUTATED DEL PEAK 10(7Q31.1) WILD-TYPE
  CLUS_1                           2                            37
  CLUS_2                           3                            22
  CLUS_3                           1                            19
  CLUS_4                           0                            15
  CLUS_5                           3                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(7Q31.1) MUTATED        1      4      1      0      3
  DEL PEAK 10(7Q31.1) WILD-TYPE     46     21     15     16     15
D33V4, multiclass
        clus
vv       DEL PEAK 10(7Q31.1) MUTATED DEL PEAK 10(7Q31.1) WILD-TYPE
  CLUS_1                           1                            46
  CLUS_2                           4                            21
  CLUS_3                           1                            15
  CLUS_4                           0                            16
  CLUS_5                           3                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(7Q31.1) MUTATED        3      0      5      3      3
  DEL PEAK 10(7Q31.1) WILD-TYPE     36     26     38     36     27
D33V5, multiclass
        clus
vv       DEL PEAK 10(7Q31.1) MUTATED DEL PEAK 10(7Q31.1) WILD-TYPE
  CLUS_1                           3                            36
  CLUS_2                           0                            26
  CLUS_3                           5                            38
  CLUS_4                           3                            36
  CLUS_5                           3                            27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(7Q31.1) MUTATED        4      9      1
  DEL PEAK 10(7Q31.1) WILD-TYPE     70     66     27
D33V6, multiclass
        clus
vv       DEL PEAK 10(7Q31.1) MUTATED DEL PEAK 10(7Q31.1) WILD-TYPE
  CLUS_1                           4                            70
  CLUS_2                           9                            66
  CLUS_3                           1                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(7Q31.1) MUTATED        4      3      2      4      1
  DEL PEAK 10(7Q31.1) WILD-TYPE     48     44     23     27     21
D33V7, multiclass
        clus
vv       DEL PEAK 10(7Q31.1) MUTATED DEL PEAK 10(7Q31.1) WILD-TYPE
  CLUS_1                           4                            48
  CLUS_2                           3                            44
  CLUS_3                           2                            23
  CLUS_4                           4                            27
  CLUS_5                           1                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(7Q31.1) MUTATED       10      3      1
  DEL PEAK 10(7Q31.1) WILD-TYPE     92     39     32
D33V8, multiclass
        clus
vv       DEL PEAK 10(7Q31.1) MUTATED DEL PEAK 10(7Q31.1) WILD-TYPE
  CLUS_1                          10                            92
  CLUS_2                           3                            39
  CLUS_3                           1                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(7Q31.1) MUTATED        2      1      3      1      6      1
  DEL PEAK 10(7Q31.1) WILD-TYPE     25     10     24     12     45     26
                               vv
clus                            CLUS_7
  DEL PEAK 10(7Q31.1) MUTATED        0
  DEL PEAK 10(7Q31.1) WILD-TYPE     17
D33V9, multiclass
        clus
vv       DEL PEAK 10(7Q31.1) MUTATED DEL PEAK 10(7Q31.1) WILD-TYPE
  CLUS_1                           2                            25
  CLUS_2                           1                            10
  CLUS_3                           3                            24
  CLUS_4                           1                            12
  CLUS_5                           6                            45
  CLUS_6                           1                            26
  CLUS_7                           0                            17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(7Q31.1) MUTATED        1      7      1      4      1      0
  DEL PEAK 10(7Q31.1) WILD-TYPE     22     37     18     49     25      8
D33V10, multiclass
        clus
vv       DEL PEAK 10(7Q31.1) MUTATED DEL PEAK 10(7Q31.1) WILD-TYPE
  CLUS_1                           1                            22
  CLUS_2                           7                            37
  CLUS_3                           1                            18
  CLUS_4                           4                            49
  CLUS_5                           1                            25
  CLUS_6                           0                             8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK 11(7Q36.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(7Q36.1) MUTATED        2     10      0      3
  DEL PEAK 11(7Q36.1) WILD-TYPE     24     64     46     35
D34V1, multiclass
        clus
vv       DEL PEAK 11(7Q36.1) MUTATED DEL PEAK 11(7Q36.1) WILD-TYPE
  CLUS_1                           2                            24
  CLUS_2                          10                            64
  CLUS_3                           0                            46
  CLUS_4                           3                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(7Q36.1) MUTATED        4      2      8      1
  DEL PEAK 11(7Q36.1) WILD-TYPE     41     47     44     36
D34V2, multiclass
        clus
vv       DEL PEAK 11(7Q36.1) MUTATED DEL PEAK 11(7Q36.1) WILD-TYPE
  CLUS_1                           4                            41
  CLUS_2                           2                            47
  CLUS_3                           8                            44
  CLUS_4                           1                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(7Q36.1) MUTATED        2      3      1      0      5
  DEL PEAK 11(7Q36.1) WILD-TYPE     37     22     19     15     18
D34V3, multiclass
        clus
vv       DEL PEAK 11(7Q36.1) MUTATED DEL PEAK 11(7Q36.1) WILD-TYPE
  CLUS_1                           2                            37
  CLUS_2                           3                            22
  CLUS_3                           1                            19
  CLUS_4                           0                            15
  CLUS_5                           5                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(7Q36.1) MUTATED        1      4      2      0      4
  DEL PEAK 11(7Q36.1) WILD-TYPE     46     21     14     16     14
D34V4, multiclass
        clus
vv       DEL PEAK 11(7Q36.1) MUTATED DEL PEAK 11(7Q36.1) WILD-TYPE
  CLUS_1                           1                            46
  CLUS_2                           4                            21
  CLUS_3                           2                            14
  CLUS_4                           0                            16
  CLUS_5                           4                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(7Q36.1) MUTATED        3      0      7      2      2
  DEL PEAK 11(7Q36.1) WILD-TYPE     36     26     36     37     28
D34V5, multiclass
        clus
vv       DEL PEAK 11(7Q36.1) MUTATED DEL PEAK 11(7Q36.1) WILD-TYPE
  CLUS_1                           3                            36
  CLUS_2                           0                            26
  CLUS_3                           7                            36
  CLUS_4                           2                            37
  CLUS_5                           2                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(7Q36.1) MUTATED        5      8      1
  DEL PEAK 11(7Q36.1) WILD-TYPE     69     67     27
D34V6, multiclass
        clus
vv       DEL PEAK 11(7Q36.1) MUTATED DEL PEAK 11(7Q36.1) WILD-TYPE
  CLUS_1                           5                            69
  CLUS_2                           8                            67
  CLUS_3                           1                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(7Q36.1) MUTATED        5      2      2      3      2
  DEL PEAK 11(7Q36.1) WILD-TYPE     47     45     23     28     20
D34V7, multiclass
        clus
vv       DEL PEAK 11(7Q36.1) MUTATED DEL PEAK 11(7Q36.1) WILD-TYPE
  CLUS_1                           5                            47
  CLUS_2                           2                            45
  CLUS_3                           2                            23
  CLUS_4                           3                            28
  CLUS_5                           2                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(7Q36.1) MUTATED       11      2      1
  DEL PEAK 11(7Q36.1) WILD-TYPE     91     40     32
D34V8, multiclass
        clus
vv       DEL PEAK 11(7Q36.1) MUTATED DEL PEAK 11(7Q36.1) WILD-TYPE
  CLUS_1                          11                            91
  CLUS_2                           2                            40
  CLUS_3                           1                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(7Q36.1) MUTATED        2      1      3      0      7      1
  DEL PEAK 11(7Q36.1) WILD-TYPE     25     10     24     13     44     26
                               vv
clus                            CLUS_7
  DEL PEAK 11(7Q36.1) MUTATED        0
  DEL PEAK 11(7Q36.1) WILD-TYPE     17
D34V9, multiclass
        clus
vv       DEL PEAK 11(7Q36.1) MUTATED DEL PEAK 11(7Q36.1) WILD-TYPE
  CLUS_1                           2                            25
  CLUS_2                           1                            10
  CLUS_3                           3                            24
  CLUS_4                           0                            13
  CLUS_5                           7                            44
  CLUS_6                           1                            26
  CLUS_7                           0                            17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(7Q36.1) MUTATED        2      8      0      3      1      0
  DEL PEAK 11(7Q36.1) WILD-TYPE     21     36     19     50     25      8
D34V10, multiclass
        clus
vv       DEL PEAK 11(7Q36.1) MUTATED DEL PEAK 11(7Q36.1) WILD-TYPE
  CLUS_1                           2                            21
  CLUS_2                           8                            36
  CLUS_3                           0                            19
  CLUS_4                           3                            50
  CLUS_5                           1                            25
  CLUS_6                           0                             8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK 12(8P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(8P21.3) MUTATED        7     48      5      2
  DEL PEAK 12(8P21.3) WILD-TYPE     19     26     41     36
D35V1, multiclass
        clus
vv       DEL PEAK 12(8P21.3) MUTATED DEL PEAK 12(8P21.3) WILD-TYPE
  CLUS_1                           7                            19
  CLUS_2                          48                            26
  CLUS_3                           5                            41
  CLUS_4                           2                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(8P21.3) MUTATED       17     11     26      7
  DEL PEAK 12(8P21.3) WILD-TYPE     28     38     26     30
D35V2, multiclass
        clus
vv       DEL PEAK 12(8P21.3) MUTATED DEL PEAK 12(8P21.3) WILD-TYPE
  CLUS_1                          17                            28
  CLUS_2                          11                            38
  CLUS_3                          26                            26
  CLUS_4                           7                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(8P21.3) MUTATED       17      6      7      3      7
  DEL PEAK 12(8P21.3) WILD-TYPE     22     19     13     12     16
D35V3, multiclass
        clus
vv       DEL PEAK 12(8P21.3) MUTATED DEL PEAK 12(8P21.3) WILD-TYPE
  CLUS_1                          17                            22
  CLUS_2                           6                            19
  CLUS_3                           7                            13
  CLUS_4                           3                            12
  CLUS_5                           7                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(8P21.3) MUTATED       17      6      3      4     10
  DEL PEAK 12(8P21.3) WILD-TYPE     30     19     13     12      8
D35V4, multiclass
        clus
vv       DEL PEAK 12(8P21.3) MUTATED DEL PEAK 12(8P21.3) WILD-TYPE
  CLUS_1                          17                            30
  CLUS_2                           6                            19
  CLUS_3                           3                            13
  CLUS_4                           4                            12
  CLUS_5                          10                             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(8P21.3) MUTATED       14      8     23      9      6
  DEL PEAK 12(8P21.3) WILD-TYPE     25     18     20     30     24
D35V5, multiclass
        clus
vv       DEL PEAK 12(8P21.3) MUTATED DEL PEAK 12(8P21.3) WILD-TYPE
  CLUS_1                          14                            25
  CLUS_2                           8                            18
  CLUS_3                          23                            20
  CLUS_4                           9                            30
  CLUS_5                           6                            24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P21.3) MUTATED       22     33      5
  DEL PEAK 12(8P21.3) WILD-TYPE     52     42     23
D35V6, multiclass
        clus
vv       DEL PEAK 12(8P21.3) MUTATED DEL PEAK 12(8P21.3) WILD-TYPE
  CLUS_1                          22                            52
  CLUS_2                          33                            42
  CLUS_3                           5                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(8P21.3) MUTATED       22     13      8     10      7
  DEL PEAK 12(8P21.3) WILD-TYPE     30     34     17     21     15
D35V7, multiclass
        clus
vv       DEL PEAK 12(8P21.3) MUTATED DEL PEAK 12(8P21.3) WILD-TYPE
  CLUS_1                          22                            30
  CLUS_2                          13                            34
  CLUS_3                           8                            17
  CLUS_4                          10                            21
  CLUS_5                           7                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P21.3) MUTATED       43      9      8
  DEL PEAK 12(8P21.3) WILD-TYPE     59     33     25
D35V8, multiclass
        clus
vv       DEL PEAK 12(8P21.3) MUTATED DEL PEAK 12(8P21.3) WILD-TYPE
  CLUS_1                          43                            59
  CLUS_2                           9                            33
  CLUS_3                           8                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(8P21.3) MUTATED        7      5      7      4     24      7
  DEL PEAK 12(8P21.3) WILD-TYPE     20      6     20      9     27     20
                               vv
clus                            CLUS_7
  DEL PEAK 12(8P21.3) MUTATED        5
  DEL PEAK 12(8P21.3) WILD-TYPE     12
D35V9, multiclass
        clus
vv       DEL PEAK 12(8P21.3) MUTATED DEL PEAK 12(8P21.3) WILD-TYPE
  CLUS_1                           7                            20
  CLUS_2                           5                             6
  CLUS_3                           7                            20
  CLUS_4                           4                             9
  CLUS_5                          24                            27
  CLUS_6                           7                            20
  CLUS_7                           5                            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(8P21.3) MUTATED       10     18      8     16      5      2
  DEL PEAK 12(8P21.3) WILD-TYPE     13     26     11     37     21      6
D35V10, multiclass
        clus
vv       DEL PEAK 12(8P21.3) MUTATED DEL PEAK 12(8P21.3) WILD-TYPE
  CLUS_1                          10                            13
  CLUS_2                          18                            26
  CLUS_3                           8                            11
  CLUS_4                          16                            37
  CLUS_5                           5                            21
  CLUS_6                           2                             6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK 13(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(9P21.3) MUTATED       20     66      7     23
  DEL PEAK 13(9P21.3) WILD-TYPE      6      8     39     15
D36V1, multiclass
        clus
vv       DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE
  CLUS_1                          20                             6
  CLUS_2                          66                             8
  CLUS_3                           7                            39
  CLUS_4                          23                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(9P21.3) MUTATED       38     17     47     13
  DEL PEAK 13(9P21.3) WILD-TYPE      7     32      5     24
D36V2, multiclass
        clus
vv       DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE
  CLUS_1                          38                             7
  CLUS_2                          17                            32
  CLUS_3                          47                             5
  CLUS_4                          13                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(9P21.3) MUTATED       30     17     13      6     14
  DEL PEAK 13(9P21.3) WILD-TYPE      9      8      7      9      9
D36V3, multiclass
        clus
vv       DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE
  CLUS_1                          30                             9
  CLUS_2                          17                             8
  CLUS_3                          13                             7
  CLUS_4                           6                             9
  CLUS_5                          14                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(9P21.3) MUTATED       31     17     10      8     14
  DEL PEAK 13(9P21.3) WILD-TYPE     16      8      6      8      4
D36V4, multiclass
        clus
vv       DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE
  CLUS_1                          31                            16
  CLUS_2                          17                             8
  CLUS_3                          10                             6
  CLUS_4                           8                             8
  CLUS_5                          14                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(9P21.3) MUTATED       33      7     40     17     12
  DEL PEAK 13(9P21.3) WILD-TYPE      6     19      3     22     18
D36V5, multiclass
        clus
vv       DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE
  CLUS_1                          33                             6
  CLUS_2                           7                            19
  CLUS_3                          40                             3
  CLUS_4                          17                            22
  CLUS_5                          12                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9P21.3) MUTATED       44     57      8
  DEL PEAK 13(9P21.3) WILD-TYPE     30     18     20
D36V6, multiclass
        clus
vv       DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE
  CLUS_1                          44                            30
  CLUS_2                          57                            18
  CLUS_3                           8                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(9P21.3) MUTATED       49     22     14     15      9
  DEL PEAK 13(9P21.3) WILD-TYPE      3     25     11     16     13
D36V7, multiclass
        clus
vv       DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE
  CLUS_1                          49                             3
  CLUS_2                          22                            25
  CLUS_3                          14                            11
  CLUS_4                          15                            16
  CLUS_5                           9                            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9P21.3) MUTATED       80     17     12
  DEL PEAK 13(9P21.3) WILD-TYPE     22     25     21
D36V8, multiclass
        clus
vv       DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE
  CLUS_1                          80                            22
  CLUS_2                          17                            25
  CLUS_3                          12                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(9P21.3) MUTATED       13      9     15      4     46     16
  DEL PEAK 13(9P21.3) WILD-TYPE     14      2     12      9      5     11
                               vv
clus                            CLUS_7
  DEL PEAK 13(9P21.3) MUTATED        5
  DEL PEAK 13(9P21.3) WILD-TYPE     12
D36V9, multiclass
        clus
vv       DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE
  CLUS_1                          13                            14
  CLUS_2                           9                             2
  CLUS_3                          15                            12
  CLUS_4                           4                             9
  CLUS_5                          46                             5
  CLUS_6                          16                            11
  CLUS_7                           5                            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(9P21.3) MUTATED       19     40      9     28     11      1
  DEL PEAK 13(9P21.3) WILD-TYPE      4      4     10     25     15      7
D36V10, multiclass
        clus
vv       DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE
  CLUS_1                          19                             4
  CLUS_2                          40                             4
  CLUS_3                           9                            10
  CLUS_4                          28                            25
  CLUS_5                          11                            15
  CLUS_6                           1                             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK 14(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(10P15.3) MUTATED       11     18      0     12
  DEL PEAK 14(10P15.3) WILD-TYPE     15     56     46     26
D37V1, multiclass
        clus
vv       DEL PEAK 14(10P15.3) MUTATED DEL PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                           11                             15
  CLUS_2                           18                             56
  CLUS_3                            0                             46
  CLUS_4                           12                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(10P15.3) MUTATED       11      7     16      7
  DEL PEAK 14(10P15.3) WILD-TYPE     34     42     36     30
D37V2, multiclass
        clus
vv       DEL PEAK 14(10P15.3) MUTATED DEL PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                           11                             34
  CLUS_2                            7                             42
  CLUS_3                           16                             36
  CLUS_4                            7                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(10P15.3) MUTATED        8      3      3      2      5
  DEL PEAK 14(10P15.3) WILD-TYPE     31     22     17     13     18
D37V3, multiclass
        clus
vv       DEL PEAK 14(10P15.3) MUTATED DEL PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                            8                             31
  CLUS_2                            3                             22
  CLUS_3                            3                             17
  CLUS_4                            2                             13
  CLUS_5                            5                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(10P15.3) MUTATED        6      4      3      3      5
  DEL PEAK 14(10P15.3) WILD-TYPE     41     21     13     13     13
D37V4, multiclass
        clus
vv       DEL PEAK 14(10P15.3) MUTATED DEL PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                            6                             41
  CLUS_2                            4                             21
  CLUS_3                            3                             13
  CLUS_4                            3                             13
  CLUS_5                            5                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(10P15.3) MUTATED        5      6     20      6      3
  DEL PEAK 14(10P15.3) WILD-TYPE     34     20     23     33     27
D37V5, multiclass
        clus
vv       DEL PEAK 14(10P15.3) MUTATED DEL PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                            5                             34
  CLUS_2                            6                             20
  CLUS_3                           20                             23
  CLUS_4                            6                             33
  CLUS_5                            3                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(10P15.3) MUTATED       10     25      5
  DEL PEAK 14(10P15.3) WILD-TYPE     64     50     23
D37V6, multiclass
        clus
vv       DEL PEAK 14(10P15.3) MUTATED DEL PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                           10                             64
  CLUS_2                           25                             50
  CLUS_3                            5                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(10P15.3) MUTATED       12      9      4     10      5
  DEL PEAK 14(10P15.3) WILD-TYPE     40     38     21     21     17
D37V7, multiclass
        clus
vv       DEL PEAK 14(10P15.3) MUTATED DEL PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                           12                             40
  CLUS_2                            9                             38
  CLUS_3                            4                             21
  CLUS_4                           10                             21
  CLUS_5                            5                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(10P15.3) MUTATED       30      4      6
  DEL PEAK 14(10P15.3) WILD-TYPE     72     38     27
D37V8, multiclass
        clus
vv       DEL PEAK 14(10P15.3) MUTATED DEL PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                           30                             72
  CLUS_2                            4                             38
  CLUS_3                            6                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(10P15.3) MUTATED        2      7      2      2     17      3
  DEL PEAK 14(10P15.3) WILD-TYPE     25      4     25     11     34     24
                                vv
clus                             CLUS_7
  DEL PEAK 14(10P15.3) MUTATED        6
  DEL PEAK 14(10P15.3) WILD-TYPE     11
D37V9, multiclass
        clus
vv       DEL PEAK 14(10P15.3) MUTATED DEL PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                            2                             25
  CLUS_2                            7                              4
  CLUS_3                            2                             25
  CLUS_4                            2                             11
  CLUS_5                           17                             34
  CLUS_6                            3                             24
  CLUS_7                            6                             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(10P15.3) MUTATED        6     15      6      8      1      3
  DEL PEAK 14(10P15.3) WILD-TYPE     17     29     13     45     25      5
D37V10, multiclass
        clus
vv       DEL PEAK 14(10P15.3) MUTATED DEL PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                            6                             17
  CLUS_2                           15                             29
  CLUS_3                            6                             13
  CLUS_4                            8                             45
  CLUS_5                            1                             25
  CLUS_6                            3                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 15(10Q23.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(10Q23.33) MUTATED       10     17      0      8
  DEL PEAK 15(10Q23.33) WILD-TYPE     16     57     46     30
D38V1, multiclass
        clus
vv       DEL PEAK 15(10Q23.33) MUTATED DEL PEAK 15(10Q23.33) WILD-TYPE
  CLUS_1                            10                              16
  CLUS_2                            17                              57
  CLUS_3                             0                              46
  CLUS_4                             8                              30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(10Q23.33) MUTATED        7      9     12      6
  DEL PEAK 15(10Q23.33) WILD-TYPE     38     40     40     31
D38V2, multiclass
        clus
vv       DEL PEAK 15(10Q23.33) MUTATED DEL PEAK 15(10Q23.33) WILD-TYPE
  CLUS_1                             7                              38
  CLUS_2                             9                              40
  CLUS_3                            12                              40
  CLUS_4                             6                              31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(10Q23.33) MUTATED        8      3      3      1      6
  DEL PEAK 15(10Q23.33) WILD-TYPE     31     22     17     14     17
D38V3, multiclass
        clus
vv       DEL PEAK 15(10Q23.33) MUTATED DEL PEAK 15(10Q23.33) WILD-TYPE
  CLUS_1                             8                              31
  CLUS_2                             3                              22
  CLUS_3                             3                              17
  CLUS_4                             1                              14
  CLUS_5                             6                              17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(10Q23.33) MUTATED        5      4      3      3      6
  DEL PEAK 15(10Q23.33) WILD-TYPE     42     21     13     13     12
D38V4, multiclass
        clus
vv       DEL PEAK 15(10Q23.33) MUTATED DEL PEAK 15(10Q23.33) WILD-TYPE
  CLUS_1                             5                              42
  CLUS_2                             4                              21
  CLUS_3                             3                              13
  CLUS_4                             3                              13
  CLUS_5                             6                              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(10Q23.33) MUTATED        3      5     15      7      3
  DEL PEAK 15(10Q23.33) WILD-TYPE     36     21     28     32     27
D38V5, multiclass
        clus
vv       DEL PEAK 15(10Q23.33) MUTATED DEL PEAK 15(10Q23.33) WILD-TYPE
  CLUS_1                             3                              36
  CLUS_2                             5                              21
  CLUS_3                            15                              28
  CLUS_4                             7                              32
  CLUS_5                             3                              27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(10Q23.33) MUTATED       10     19      4
  DEL PEAK 15(10Q23.33) WILD-TYPE     64     56     24
D38V6, multiclass
        clus
vv       DEL PEAK 15(10Q23.33) MUTATED DEL PEAK 15(10Q23.33) WILD-TYPE
  CLUS_1                            10                              64
  CLUS_2                            19                              56
  CLUS_3                             4                              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(10Q23.33) MUTATED        5      9      5     10      4
  DEL PEAK 15(10Q23.33) WILD-TYPE     47     38     20     21     18
D38V7, multiclass
        clus
vv       DEL PEAK 15(10Q23.33) MUTATED DEL PEAK 15(10Q23.33) WILD-TYPE
  CLUS_1                             5                              47
  CLUS_2                             9                              38
  CLUS_3                             5                              20
  CLUS_4                            10                              21
  CLUS_5                             4                              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(10Q23.33) MUTATED       22      6      5
  DEL PEAK 15(10Q23.33) WILD-TYPE     80     36     28
D38V8, multiclass
        clus
vv       DEL PEAK 15(10Q23.33) MUTATED DEL PEAK 15(10Q23.33) WILD-TYPE
  CLUS_1                            22                              80
  CLUS_2                             6                              36
  CLUS_3                             5                              28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(10Q23.33) MUTATED        1      5      6      2     10      2
  DEL PEAK 15(10Q23.33) WILD-TYPE     26      6     21     11     41     25
                                 vv
clus                              CLUS_7
  DEL PEAK 15(10Q23.33) MUTATED        6
  DEL PEAK 15(10Q23.33) WILD-TYPE     11
D38V9, multiclass
        clus
vv       DEL PEAK 15(10Q23.33) MUTATED DEL PEAK 15(10Q23.33) WILD-TYPE
  CLUS_1                             1                              26
  CLUS_2                             5                               6
  CLUS_3                             6                              21
  CLUS_4                             2                              11
  CLUS_5                            10                              41
  CLUS_6                             2                              25
  CLUS_7                             6                              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(10Q23.33) MUTATED        5      9      5     10      0      3
  DEL PEAK 15(10Q23.33) WILD-TYPE     18     35     14     43     26      5
D38V10, multiclass
        clus
vv       DEL PEAK 15(10Q23.33) MUTATED DEL PEAK 15(10Q23.33) WILD-TYPE
  CLUS_1                             5                              18
  CLUS_2                             9                              35
  CLUS_3                             5                              14
  CLUS_4                            10                              43
  CLUS_5                             0                              26
  CLUS_6                             3                               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 16(11P15.4) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(11P15.4) MUTATED        5     13      1     10
  DEL PEAK 16(11P15.4) WILD-TYPE     21     61     45     28
D39V1, multiclass
        clus
vv       DEL PEAK 16(11P15.4) MUTATED DEL PEAK 16(11P15.4) WILD-TYPE
  CLUS_1                            5                             21
  CLUS_2                           13                             61
  CLUS_3                            1                             45
  CLUS_4                           10                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(11P15.4) MUTATED        9      8      9      3
  DEL PEAK 16(11P15.4) WILD-TYPE     36     41     43     34
D39V2, multiclass
        clus
vv       DEL PEAK 16(11P15.4) MUTATED DEL PEAK 16(11P15.4) WILD-TYPE
  CLUS_1                            9                             36
  CLUS_2                            8                             41
  CLUS_3                            9                             43
  CLUS_4                            3                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(11P15.4) MUTATED       10      1      0      1      8
  DEL PEAK 16(11P15.4) WILD-TYPE     29     24     20     14     15
D39V3, multiclass
        clus
vv       DEL PEAK 16(11P15.4) MUTATED DEL PEAK 16(11P15.4) WILD-TYPE
  CLUS_1                           10                             29
  CLUS_2                            1                             24
  CLUS_3                            0                             20
  CLUS_4                            1                             14
  CLUS_5                            8                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(11P15.4) MUTATED        9      1      1      3      6
  DEL PEAK 16(11P15.4) WILD-TYPE     38     24     15     13     12
D39V4, multiclass
        clus
vv       DEL PEAK 16(11P15.4) MUTATED DEL PEAK 16(11P15.4) WILD-TYPE
  CLUS_1                            9                             38
  CLUS_2                            1                             24
  CLUS_3                            1                             15
  CLUS_4                            3                             13
  CLUS_5                            6                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(11P15.4) MUTATED        5      4     10      5      3
  DEL PEAK 16(11P15.4) WILD-TYPE     34     22     33     34     27
D39V5, multiclass
        clus
vv       DEL PEAK 16(11P15.4) MUTATED DEL PEAK 16(11P15.4) WILD-TYPE
  CLUS_1                            5                             34
  CLUS_2                            4                             22
  CLUS_3                           10                             33
  CLUS_4                            5                             34
  CLUS_5                            3                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(11P15.4) MUTATED       12     10      5
  DEL PEAK 16(11P15.4) WILD-TYPE     62     65     23
D39V6, multiclass
        clus
vv       DEL PEAK 16(11P15.4) MUTATED DEL PEAK 16(11P15.4) WILD-TYPE
  CLUS_1                           12                             62
  CLUS_2                           10                             65
  CLUS_3                            5                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(11P15.4) MUTATED        8      6      3      8      2
  DEL PEAK 16(11P15.4) WILD-TYPE     44     41     22     23     20
D39V7, multiclass
        clus
vv       DEL PEAK 16(11P15.4) MUTATED DEL PEAK 16(11P15.4) WILD-TYPE
  CLUS_1                            8                             44
  CLUS_2                            6                             41
  CLUS_3                            3                             22
  CLUS_4                            8                             23
  CLUS_5                            2                             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(11P15.4) MUTATED       15      5      7
  DEL PEAK 16(11P15.4) WILD-TYPE     87     37     26
D39V8, multiclass
        clus
vv       DEL PEAK 16(11P15.4) MUTATED DEL PEAK 16(11P15.4) WILD-TYPE
  CLUS_1                           15                             87
  CLUS_2                            5                             37
  CLUS_3                            7                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(11P15.4) MUTATED        3      1      5      1     11      2
  DEL PEAK 16(11P15.4) WILD-TYPE     24     10     22     12     40     25
                                vv
clus                             CLUS_7
  DEL PEAK 16(11P15.4) MUTATED        3
  DEL PEAK 16(11P15.4) WILD-TYPE     14
D39V9, multiclass
        clus
vv       DEL PEAK 16(11P15.4) MUTATED DEL PEAK 16(11P15.4) WILD-TYPE
  CLUS_1                            3                             24
  CLUS_2                            1                             10
  CLUS_3                            5                             22
  CLUS_4                            1                             12
  CLUS_5                           11                             40
  CLUS_6                            2                             25
  CLUS_7                            3                             14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(11P15.4) MUTATED        2      7      3      8      3      3
  DEL PEAK 16(11P15.4) WILD-TYPE     21     37     16     45     23      5
D39V10, multiclass
        clus
vv       DEL PEAK 16(11P15.4) MUTATED DEL PEAK 16(11P15.4) WILD-TYPE
  CLUS_1                            2                             21
  CLUS_2                            7                             37
  CLUS_3                            3                             16
  CLUS_4                            8                             45
  CLUS_5                            3                             23
  CLUS_6                            3                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 17(12P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(12P13.1) MUTATED       10     15      1      3
  DEL PEAK 17(12P13.1) WILD-TYPE     16     59     45     35
D40V1, multiclass
        clus
vv       DEL PEAK 17(12P13.1) MUTATED DEL PEAK 17(12P13.1) WILD-TYPE
  CLUS_1                           10                             16
  CLUS_2                           15                             59
  CLUS_3                            1                             45
  CLUS_4                            3                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(12P13.1) MUTATED        9      1     16      3
  DEL PEAK 17(12P13.1) WILD-TYPE     36     48     36     34
D40V2, multiclass
        clus
vv       DEL PEAK 17(12P13.1) MUTATED DEL PEAK 17(12P13.1) WILD-TYPE
  CLUS_1                            9                             36
  CLUS_2                            1                             48
  CLUS_3                           16                             36
  CLUS_4                            3                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(12P13.1) MUTATED       12      2      0      1      2
  DEL PEAK 17(12P13.1) WILD-TYPE     27     23     20     14     21
D40V3, multiclass
        clus
vv       DEL PEAK 17(12P13.1) MUTATED DEL PEAK 17(12P13.1) WILD-TYPE
  CLUS_1                           12                             27
  CLUS_2                            2                             23
  CLUS_3                            0                             20
  CLUS_4                            1                             14
  CLUS_5                            2                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(12P13.1) MUTATED       12      2      2      1      0
  DEL PEAK 17(12P13.1) WILD-TYPE     35     23     14     15     18
D40V4, multiclass
        clus
vv       DEL PEAK 17(12P13.1) MUTATED DEL PEAK 17(12P13.1) WILD-TYPE
  CLUS_1                           12                             35
  CLUS_2                            2                             23
  CLUS_3                            2                             14
  CLUS_4                            1                             15
  CLUS_5                            0                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(12P13.1) MUTATED       13      2      9      1      2
  DEL PEAK 17(12P13.1) WILD-TYPE     26     24     34     38     28
D40V5, multiclass
        clus
vv       DEL PEAK 17(12P13.1) MUTATED DEL PEAK 17(12P13.1) WILD-TYPE
  CLUS_1                           13                             26
  CLUS_2                            2                             24
  CLUS_3                            9                             34
  CLUS_4                            1                             38
  CLUS_5                            2                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(12P13.1) MUTATED        6     20      1
  DEL PEAK 17(12P13.1) WILD-TYPE     68     55     27
D40V6, multiclass
        clus
vv       DEL PEAK 17(12P13.1) MUTATED DEL PEAK 17(12P13.1) WILD-TYPE
  CLUS_1                            6                             68
  CLUS_2                           20                             55
  CLUS_3                            1                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(12P13.1) MUTATED       12      5      2      6      2
  DEL PEAK 17(12P13.1) WILD-TYPE     40     42     23     25     20
D40V7, multiclass
        clus
vv       DEL PEAK 17(12P13.1) MUTATED DEL PEAK 17(12P13.1) WILD-TYPE
  CLUS_1                           12                             40
  CLUS_2                            5                             42
  CLUS_3                            2                             23
  CLUS_4                            6                             25
  CLUS_5                            2                             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(12P13.1) MUTATED       25      0      2
  DEL PEAK 17(12P13.1) WILD-TYPE     77     42     31
D40V8, multiclass
        clus
vv       DEL PEAK 17(12P13.1) MUTATED DEL PEAK 17(12P13.1) WILD-TYPE
  CLUS_1                           25                             77
  CLUS_2                            0                             42
  CLUS_3                            2                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(12P13.1) MUTATED        2      3      1      1     14      4
  DEL PEAK 17(12P13.1) WILD-TYPE     25      8     26     12     37     23
                                vv
clus                             CLUS_7
  DEL PEAK 17(12P13.1) MUTATED        1
  DEL PEAK 17(12P13.1) WILD-TYPE     16
D40V9, multiclass
        clus
vv       DEL PEAK 17(12P13.1) MUTATED DEL PEAK 17(12P13.1) WILD-TYPE
  CLUS_1                            2                             25
  CLUS_2                            3                              8
  CLUS_3                            1                             26
  CLUS_4                            1                             12
  CLUS_5                           14                             37
  CLUS_6                            4                             23
  CLUS_7                            1                             16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(12P13.1) MUTATED        7     11      4      2      2      0
  DEL PEAK 17(12P13.1) WILD-TYPE     16     33     15     51     24      8
D40V10, multiclass
        clus
vv       DEL PEAK 17(12P13.1) MUTATED DEL PEAK 17(12P13.1) WILD-TYPE
  CLUS_1                            7                             16
  CLUS_2                           11                             33
  CLUS_3                            4                             15
  CLUS_4                            2                             51
  CLUS_5                            2                             24
  CLUS_6                            0                              8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 18(12Q24.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(12Q24.33) MUTATED       11     22      4      6
  DEL PEAK 18(12Q24.33) WILD-TYPE     15     52     42     32
D41V1, multiclass
        clus
vv       DEL PEAK 18(12Q24.33) MUTATED DEL PEAK 18(12Q24.33) WILD-TYPE
  CLUS_1                            11                              15
  CLUS_2                            22                              52
  CLUS_3                             4                              42
  CLUS_4                             6                              32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(12Q24.33) MUTATED       12      5     22      4
  DEL PEAK 18(12Q24.33) WILD-TYPE     33     44     30     33
D41V2, multiclass
        clus
vv       DEL PEAK 18(12Q24.33) MUTATED DEL PEAK 18(12Q24.33) WILD-TYPE
  CLUS_1                            12                              33
  CLUS_2                             5                              44
  CLUS_3                            22                              30
  CLUS_4                             4                              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(12Q24.33) MUTATED       15      3      4      0      4
  DEL PEAK 18(12Q24.33) WILD-TYPE     24     22     16     15     19
D41V3, multiclass
        clus
vv       DEL PEAK 18(12Q24.33) MUTATED DEL PEAK 18(12Q24.33) WILD-TYPE
  CLUS_1                            15                              24
  CLUS_2                             3                              22
  CLUS_3                             4                              16
  CLUS_4                             0                              15
  CLUS_5                             4                              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(12Q24.33) MUTATED       14      3      2      0      7
  DEL PEAK 18(12Q24.33) WILD-TYPE     33     22     14     16     11
D41V4, multiclass
        clus
vv       DEL PEAK 18(12Q24.33) MUTATED DEL PEAK 18(12Q24.33) WILD-TYPE
  CLUS_1                            14                              33
  CLUS_2                             3                              22
  CLUS_3                             2                              14
  CLUS_4                             0                              16
  CLUS_5                             7                              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(12Q24.33) MUTATED       10      3     18      7      3
  DEL PEAK 18(12Q24.33) WILD-TYPE     29     23     25     32     27
D41V5, multiclass
        clus
vv       DEL PEAK 18(12Q24.33) MUTATED DEL PEAK 18(12Q24.33) WILD-TYPE
  CLUS_1                            10                              29
  CLUS_2                             3                              23
  CLUS_3                            18                              25
  CLUS_4                             7                              32
  CLUS_5                             3                              27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(12Q24.33) MUTATED       15     25      1
  DEL PEAK 18(12Q24.33) WILD-TYPE     59     50     27
D41V6, multiclass
        clus
vv       DEL PEAK 18(12Q24.33) MUTATED DEL PEAK 18(12Q24.33) WILD-TYPE
  CLUS_1                            15                              59
  CLUS_2                            25                              50
  CLUS_3                             1                              27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(12Q24.33) MUTATED       17      7      4     10      3
  DEL PEAK 18(12Q24.33) WILD-TYPE     35     40     21     21     19
D41V7, multiclass
        clus
vv       DEL PEAK 18(12Q24.33) MUTATED DEL PEAK 18(12Q24.33) WILD-TYPE
  CLUS_1                            17                              35
  CLUS_2                             7                              40
  CLUS_3                             4                              21
  CLUS_4                            10                              21
  CLUS_5                             3                              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(12Q24.33) MUTATED       34      5      2
  DEL PEAK 18(12Q24.33) WILD-TYPE     68     37     31
D41V8, multiclass
        clus
vv       DEL PEAK 18(12Q24.33) MUTATED DEL PEAK 18(12Q24.33) WILD-TYPE
  CLUS_1                            34                              68
  CLUS_2                             5                              37
  CLUS_3                             2                              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(12Q24.33) MUTATED        5      5      6      2     16      2
  DEL PEAK 18(12Q24.33) WILD-TYPE     22      6     21     11     35     25
                                 vv
clus                              CLUS_7
  DEL PEAK 18(12Q24.33) MUTATED        4
  DEL PEAK 18(12Q24.33) WILD-TYPE     13
D41V9, multiclass
        clus
vv       DEL PEAK 18(12Q24.33) MUTATED DEL PEAK 18(12Q24.33) WILD-TYPE
  CLUS_1                             5                              22
  CLUS_2                             5                               6
  CLUS_3                             6                              21
  CLUS_4                             2                              11
  CLUS_5                            16                              35
  CLUS_6                             2                              25
  CLUS_7                             4                              13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(12Q24.33) MUTATED        6     15      6     12      1      0
  DEL PEAK 18(12Q24.33) WILD-TYPE     17     29     13     41     25      8
D41V10, multiclass
        clus
vv       DEL PEAK 18(12Q24.33) MUTATED DEL PEAK 18(12Q24.33) WILD-TYPE
  CLUS_1                             6                              17
  CLUS_2                            15                              29
  CLUS_3                             6                              13
  CLUS_4                            12                              41
  CLUS_5                             1                              25
  CLUS_6                             0                               8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 19(14Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(14Q11.2) MUTATED        4     10      4      2
  DEL PEAK 19(14Q11.2) WILD-TYPE     22     64     42     36
D42V1, multiclass
        clus
vv       DEL PEAK 19(14Q11.2) MUTATED DEL PEAK 19(14Q11.2) WILD-TYPE
  CLUS_1                            4                             22
  CLUS_2                           10                             64
  CLUS_3                            4                             42
  CLUS_4                            2                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(14Q11.2) MUTATED        8      1     10      1
  DEL PEAK 19(14Q11.2) WILD-TYPE     37     48     42     36
D42V2, multiclass
        clus
vv       DEL PEAK 19(14Q11.2) MUTATED DEL PEAK 19(14Q11.2) WILD-TYPE
  CLUS_1                            8                             37
  CLUS_2                            1                             48
  CLUS_3                           10                             42
  CLUS_4                            1                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(14Q11.2) MUTATED        6      2      2      1      2
  DEL PEAK 19(14Q11.2) WILD-TYPE     33     23     18     14     21
D42V3, multiclass
        clus
vv       DEL PEAK 19(14Q11.2) MUTATED DEL PEAK 19(14Q11.2) WILD-TYPE
  CLUS_1                            6                             33
  CLUS_2                            2                             23
  CLUS_3                            2                             18
  CLUS_4                            1                             14
  CLUS_5                            2                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(14Q11.2) MUTATED        6      2      3      1      1
  DEL PEAK 19(14Q11.2) WILD-TYPE     41     23     13     15     17
D42V4, multiclass
        clus
vv       DEL PEAK 19(14Q11.2) MUTATED DEL PEAK 19(14Q11.2) WILD-TYPE
  CLUS_1                            6                             41
  CLUS_2                            2                             23
  CLUS_3                            3                             13
  CLUS_4                            1                             15
  CLUS_5                            1                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(14Q11.2) MUTATED        5      1     10      2      2
  DEL PEAK 19(14Q11.2) WILD-TYPE     34     25     33     37     28
D42V5, multiclass
        clus
vv       DEL PEAK 19(14Q11.2) MUTATED DEL PEAK 19(14Q11.2) WILD-TYPE
  CLUS_1                            5                             34
  CLUS_2                            1                             25
  CLUS_3                           10                             33
  CLUS_4                            2                             37
  CLUS_5                            2                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(14Q11.2) MUTATED        5     13      2
  DEL PEAK 19(14Q11.2) WILD-TYPE     69     62     26
D42V6, multiclass
        clus
vv       DEL PEAK 19(14Q11.2) MUTATED DEL PEAK 19(14Q11.2) WILD-TYPE
  CLUS_1                            5                             69
  CLUS_2                           13                             62
  CLUS_3                            2                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(14Q11.2) MUTATED        7      3      0      7      3
  DEL PEAK 19(14Q11.2) WILD-TYPE     45     44     25     24     19
D42V7, multiclass
        clus
vv       DEL PEAK 19(14Q11.2) MUTATED DEL PEAK 19(14Q11.2) WILD-TYPE
  CLUS_1                            7                             45
  CLUS_2                            3                             44
  CLUS_3                            0                             25
  CLUS_4                            7                             24
  CLUS_5                            3                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(14Q11.2) MUTATED       15      2      3
  DEL PEAK 19(14Q11.2) WILD-TYPE     87     40     30
D42V8, multiclass
        clus
vv       DEL PEAK 19(14Q11.2) MUTATED DEL PEAK 19(14Q11.2) WILD-TYPE
  CLUS_1                           15                             87
  CLUS_2                            2                             40
  CLUS_3                            3                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(14Q11.2) MUTATED        3      2      1      2      9      2
  DEL PEAK 19(14Q11.2) WILD-TYPE     24      9     26     11     42     25
                                vv
clus                             CLUS_7
  DEL PEAK 19(14Q11.2) MUTATED        0
  DEL PEAK 19(14Q11.2) WILD-TYPE     17
D42V9, multiclass
        clus
vv       DEL PEAK 19(14Q11.2) MUTATED DEL PEAK 19(14Q11.2) WILD-TYPE
  CLUS_1                            3                             24
  CLUS_2                            2                              9
  CLUS_3                            1                             26
  CLUS_4                            2                             11
  CLUS_5                            9                             42
  CLUS_6                            2                             25
  CLUS_7                            0                             17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(14Q11.2) MUTATED        3      7      2      4      3      0
  DEL PEAK 19(14Q11.2) WILD-TYPE     20     37     17     49     23      8
D42V10, multiclass
        clus
vv       DEL PEAK 19(14Q11.2) MUTATED DEL PEAK 19(14Q11.2) WILD-TYPE
  CLUS_1                            3                             20
  CLUS_2                            7                             37
  CLUS_3                            2                             17
  CLUS_4                            4                             49
  CLUS_5                            3                             23
  CLUS_6                            0                              8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 20(15Q15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(15Q15.1) MUTATED        5     22      2      7
  DEL PEAK 20(15Q15.1) WILD-TYPE     21     52     44     31
D43V1, multiclass
        clus
vv       DEL PEAK 20(15Q15.1) MUTATED DEL PEAK 20(15Q15.1) WILD-TYPE
  CLUS_1                            5                             21
  CLUS_2                           22                             52
  CLUS_3                            2                             44
  CLUS_4                            7                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(15Q15.1) MUTATED        9      5     16      5
  DEL PEAK 20(15Q15.1) WILD-TYPE     36     44     36     32
D43V2, multiclass
        clus
vv       DEL PEAK 20(15Q15.1) MUTATED DEL PEAK 20(15Q15.1) WILD-TYPE
  CLUS_1                            9                             36
  CLUS_2                            5                             44
  CLUS_3                           16                             36
  CLUS_4                            5                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(15Q15.1) MUTATED       11      7      2      1      4
  DEL PEAK 20(15Q15.1) WILD-TYPE     28     18     18     14     19
D43V3, multiclass
        clus
vv       DEL PEAK 20(15Q15.1) MUTATED DEL PEAK 20(15Q15.1) WILD-TYPE
  CLUS_1                           11                             28
  CLUS_2                            7                             18
  CLUS_3                            2                             18
  CLUS_4                            1                             14
  CLUS_5                            4                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(15Q15.1) MUTATED        7      6      2      4      6
  DEL PEAK 20(15Q15.1) WILD-TYPE     40     19     14     12     12
D43V4, multiclass
        clus
vv       DEL PEAK 20(15Q15.1) MUTATED DEL PEAK 20(15Q15.1) WILD-TYPE
  CLUS_1                            7                             40
  CLUS_2                            6                             19
  CLUS_3                            2                             14
  CLUS_4                            4                             12
  CLUS_5                            6                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(15Q15.1) MUTATED        8      2     16      4      5
  DEL PEAK 20(15Q15.1) WILD-TYPE     31     24     27     35     25
D43V5, multiclass
        clus
vv       DEL PEAK 20(15Q15.1) MUTATED DEL PEAK 20(15Q15.1) WILD-TYPE
  CLUS_1                            8                             31
  CLUS_2                            2                             24
  CLUS_3                           16                             27
  CLUS_4                            4                             35
  CLUS_5                            5                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(15Q15.1) MUTATED       11     23      1
  DEL PEAK 20(15Q15.1) WILD-TYPE     63     52     27
D43V6, multiclass
        clus
vv       DEL PEAK 20(15Q15.1) MUTATED DEL PEAK 20(15Q15.1) WILD-TYPE
  CLUS_1                           11                             63
  CLUS_2                           23                             52
  CLUS_3                            1                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(15Q15.1) MUTATED       10     10      5      8      2
  DEL PEAK 20(15Q15.1) WILD-TYPE     42     37     20     23     20
D43V7, multiclass
        clus
vv       DEL PEAK 20(15Q15.1) MUTATED DEL PEAK 20(15Q15.1) WILD-TYPE
  CLUS_1                           10                             42
  CLUS_2                           10                             37
  CLUS_3                            5                             20
  CLUS_4                            8                             23
  CLUS_5                            2                             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(15Q15.1) MUTATED       27      5      3
  DEL PEAK 20(15Q15.1) WILD-TYPE     75     37     30
D43V8, multiclass
        clus
vv       DEL PEAK 20(15Q15.1) MUTATED DEL PEAK 20(15Q15.1) WILD-TYPE
  CLUS_1                           27                             75
  CLUS_2                            5                             37
  CLUS_3                            3                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(15Q15.1) MUTATED        2      2      6      2     13      4
  DEL PEAK 20(15Q15.1) WILD-TYPE     25      9     21     11     38     23
                                vv
clus                             CLUS_7
  DEL PEAK 20(15Q15.1) MUTATED        4
  DEL PEAK 20(15Q15.1) WILD-TYPE     13
D43V9, multiclass
        clus
vv       DEL PEAK 20(15Q15.1) MUTATED DEL PEAK 20(15Q15.1) WILD-TYPE
  CLUS_1                            2                             25
  CLUS_2                            2                              9
  CLUS_3                            6                             21
  CLUS_4                            2                             11
  CLUS_5                           13                             38
  CLUS_6                            4                             23
  CLUS_7                            4                             13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(15Q15.1) MUTATED        3     13      8      7      1      1
  DEL PEAK 20(15Q15.1) WILD-TYPE     20     31     11     46     25      7
D43V10, multiclass
        clus
vv       DEL PEAK 20(15Q15.1) MUTATED DEL PEAK 20(15Q15.1) WILD-TYPE
  CLUS_1                            3                             20
  CLUS_2                           13                             31
  CLUS_3                            8                             11
  CLUS_4                            7                             46
  CLUS_5                            1                             25
  CLUS_6                            1                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 21(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(16Q23.1) MUTATED        4      9      2      4
  DEL PEAK 21(16Q23.1) WILD-TYPE     22     65     44     34
D44V1, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            4                             22
  CLUS_2                            9                             65
  CLUS_3                            2                             44
  CLUS_4                            4                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(16Q23.1) MUTATED        6      6      4      3
  DEL PEAK 21(16Q23.1) WILD-TYPE     39     43     48     34
D44V2, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            6                             39
  CLUS_2                            6                             43
  CLUS_3                            4                             48
  CLUS_4                            3                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(16Q23.1) MUTATED        3      0      1      2      0
  DEL PEAK 21(16Q23.1) WILD-TYPE     36     25     19     13     23
D44V3, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            3                             36
  CLUS_2                            0                             25
  CLUS_3                            1                             19
  CLUS_4                            2                             13
  CLUS_5                            0                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(16Q23.1) MUTATED        1      0      1      4      0
  DEL PEAK 21(16Q23.1) WILD-TYPE     46     25     15     12     18
D44V4, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            1                             46
  CLUS_2                            0                             25
  CLUS_3                            1                             15
  CLUS_4                            4                             12
  CLUS_5                            0                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(16Q23.1) MUTATED        5      5      4      2      2
  DEL PEAK 21(16Q23.1) WILD-TYPE     34     21     39     37     28
D44V5, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            5                             34
  CLUS_2                            5                             21
  CLUS_3                            4                             39
  CLUS_4                            2                             37
  CLUS_5                            2                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(16Q23.1) MUTATED        3     12      3
  DEL PEAK 21(16Q23.1) WILD-TYPE     71     63     25
D44V6, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            3                             71
  CLUS_2                           12                             63
  CLUS_3                            3                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(16Q23.1) MUTATED        2      4      1      8      3
  DEL PEAK 21(16Q23.1) WILD-TYPE     50     43     24     23     19
D44V7, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            2                             50
  CLUS_2                            4                             43
  CLUS_3                            1                             24
  CLUS_4                            8                             23
  CLUS_5                            3                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(16Q23.1) MUTATED       11      2      5
  DEL PEAK 21(16Q23.1) WILD-TYPE     91     40     28
D44V8, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                           11                             91
  CLUS_2                            2                             40
  CLUS_3                            5                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(16Q23.1) MUTATED        1      2      1      2      5      2
  DEL PEAK 21(16Q23.1) WILD-TYPE     26      9     26     11     46     25
                                vv
clus                             CLUS_7
  DEL PEAK 21(16Q23.1) MUTATED        4
  DEL PEAK 21(16Q23.1) WILD-TYPE     13
D44V9, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            1                             26
  CLUS_2                            2                              9
  CLUS_3                            1                             26
  CLUS_4                            2                             11
  CLUS_5                            5                             46
  CLUS_6                            2                             25
  CLUS_7                            4                             13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(16Q23.1) MUTATED        4      2      4      3      1      3
  DEL PEAK 21(16Q23.1) WILD-TYPE     19     42     15     50     25      5
D44V10, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            4                             19
  CLUS_2                            2                             42
  CLUS_3                            4                             15
  CLUS_4                            3                             50
  CLUS_5                            1                             25
  CLUS_6                            3                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 22(17P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(17P12) MUTATED       10     55      2     22
  DEL PEAK 22(17P12) WILD-TYPE     16     19     44     16
D45V1, multiclass
        clus
vv       DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE
  CLUS_1                         10                           16
  CLUS_2                         55                           19
  CLUS_3                          2                           44
  CLUS_4                         22                           16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(17P12) MUTATED       28     11     42      8
  DEL PEAK 22(17P12) WILD-TYPE     17     38     10     29
D45V2, multiclass
        clus
vv       DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE
  CLUS_1                         28                           17
  CLUS_2                         11                           38
  CLUS_3                         42                           10
  CLUS_4                          8                           29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(17P12) MUTATED       26     12      8      6     13
  DEL PEAK 22(17P12) WILD-TYPE     13     13     12      9     10
D45V3, multiclass
        clus
vv       DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE
  CLUS_1                         26                           13
  CLUS_2                         12                           13
  CLUS_3                          8                           12
  CLUS_4                          6                            9
  CLUS_5                         13                           10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(17P12) MUTATED       29     14      7      6      9
  DEL PEAK 22(17P12) WILD-TYPE     18     11      9     10      9
D45V4, multiclass
        clus
vv       DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE
  CLUS_1                         29                           18
  CLUS_2                         14                           11
  CLUS_3                          7                            9
  CLUS_4                          6                           10
  CLUS_5                          9                            9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(17P12) MUTATED       27      6     33     13      7
  DEL PEAK 22(17P12) WILD-TYPE     12     20     10     26     23
D45V5, multiclass
        clus
vv       DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE
  CLUS_1                         27                           12
  CLUS_2                          6                           20
  CLUS_3                         33                           10
  CLUS_4                         13                           26
  CLUS_5                          7                           23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(17P12) MUTATED       40     43      3
  DEL PEAK 22(17P12) WILD-TYPE     34     32     25
D45V6, multiclass
        clus
vv       DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE
  CLUS_1                         40                           34
  CLUS_2                         43                           32
  CLUS_3                          3                           25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(17P12) MUTATED       40     16     13     11      6
  DEL PEAK 22(17P12) WILD-TYPE     12     31     12     20     16
D45V7, multiclass
        clus
vv       DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE
  CLUS_1                         40                           12
  CLUS_2                         16                           31
  CLUS_3                         13                           12
  CLUS_4                         11                           20
  CLUS_5                          6                           16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(17P12) MUTATED       63     16      7
  DEL PEAK 22(17P12) WILD-TYPE     39     26     26
D45V8, multiclass
        clus
vv       DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE
  CLUS_1                         63                           39
  CLUS_2                         16                           26
  CLUS_3                          7                           26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 22(17P12) MUTATED       10      4     14      0     41     12      4
  DEL PEAK 22(17P12) WILD-TYPE     17      7     13     13     10     15     13
D45V9, multiclass
        clus
vv       DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE
  CLUS_1                         10                           17
  CLUS_2                          4                            7
  CLUS_3                         14                           13
  CLUS_4                          0                           13
  CLUS_5                         41                           10
  CLUS_6                         12                           15
  CLUS_7                          4                           13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(17P12) MUTATED       13     34      7     24      7      0
  DEL PEAK 22(17P12) WILD-TYPE     10     10     12     29     19      8
D45V10, multiclass
        clus
vv       DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE
  CLUS_1                         13                           10
  CLUS_2                         34                           10
  CLUS_3                          7                           12
  CLUS_4                         24                           29
  CLUS_5                          7                           19
  CLUS_6                          0                            8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 23(17Q22) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(17Q22) MUTATED        5     33      1     10
  DEL PEAK 23(17Q22) WILD-TYPE     21     41     45     28
D46V1, multiclass
        clus
vv       DEL PEAK 23(17Q22) MUTATED DEL PEAK 23(17Q22) WILD-TYPE
  CLUS_1                          5                           21
  CLUS_2                         33                           41
  CLUS_3                          1                           45
  CLUS_4                         10                           28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(17Q22) MUTATED       18      6     20      5
  DEL PEAK 23(17Q22) WILD-TYPE     27     43     32     32
D46V2, multiclass
        clus
vv       DEL PEAK 23(17Q22) MUTATED DEL PEAK 23(17Q22) WILD-TYPE
  CLUS_1                         18                           27
  CLUS_2                          6                           43
  CLUS_3                         20                           32
  CLUS_4                          5                           32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(17Q22) MUTATED       19      5      1      3      8
  DEL PEAK 23(17Q22) WILD-TYPE     20     20     19     12     15
D46V3, multiclass
        clus
vv       DEL PEAK 23(17Q22) MUTATED DEL PEAK 23(17Q22) WILD-TYPE
  CLUS_1                         19                           20
  CLUS_2                          5                           20
  CLUS_3                          1                           19
  CLUS_4                          3                           12
  CLUS_5                          8                           15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(17Q22) MUTATED       19      6      1      3      7
  DEL PEAK 23(17Q22) WILD-TYPE     28     19     15     13     11
D46V4, multiclass
        clus
vv       DEL PEAK 23(17Q22) MUTATED DEL PEAK 23(17Q22) WILD-TYPE
  CLUS_1                         19                           28
  CLUS_2                          6                           19
  CLUS_3                          1                           15
  CLUS_4                          3                           13
  CLUS_5                          7                           11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(17Q22) MUTATED       18      4     14      6      5
  DEL PEAK 23(17Q22) WILD-TYPE     21     22     29     33     25
D46V5, multiclass
        clus
vv       DEL PEAK 23(17Q22) MUTATED DEL PEAK 23(17Q22) WILD-TYPE
  CLUS_1                         18                           21
  CLUS_2                          4                           22
  CLUS_3                         14                           29
  CLUS_4                          6                           33
  CLUS_5                          5                           25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(17Q22) MUTATED       19     26      2
  DEL PEAK 23(17Q22) WILD-TYPE     55     49     26
D46V6, multiclass
        clus
vv       DEL PEAK 23(17Q22) MUTATED DEL PEAK 23(17Q22) WILD-TYPE
  CLUS_1                         19                           55
  CLUS_2                         26                           49
  CLUS_3                          2                           26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(17Q22) MUTATED       23      8      6      6      4
  DEL PEAK 23(17Q22) WILD-TYPE     29     39     19     25     18
D46V7, multiclass
        clus
vv       DEL PEAK 23(17Q22) MUTATED DEL PEAK 23(17Q22) WILD-TYPE
  CLUS_1                         23                           29
  CLUS_2                          8                           39
  CLUS_3                          6                           19
  CLUS_4                          6                           25
  CLUS_5                          4                           18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(17Q22) MUTATED       35      7      5
  DEL PEAK 23(17Q22) WILD-TYPE     67     35     28
D46V8, multiclass
        clus
vv       DEL PEAK 23(17Q22) MUTATED DEL PEAK 23(17Q22) WILD-TYPE
  CLUS_1                         35                           67
  CLUS_2                          7                           35
  CLUS_3                          5                           28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 23(17Q22) MUTATED        5      1      6      1     27      5      1
  DEL PEAK 23(17Q22) WILD-TYPE     22     10     21     12     24     22     16
D46V9, multiclass
        clus
vv       DEL PEAK 23(17Q22) MUTATED DEL PEAK 23(17Q22) WILD-TYPE
  CLUS_1                          5                           22
  CLUS_2                          1                           10
  CLUS_3                          6                           21
  CLUS_4                          1                           12
  CLUS_5                         27                           24
  CLUS_6                          5                           22
  CLUS_7                          1                           16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(17Q22) MUTATED        7     16      5     13      5      0
  DEL PEAK 23(17Q22) WILD-TYPE     16     28     14     40     21      8
D46V10, multiclass
        clus
vv       DEL PEAK 23(17Q22) MUTATED DEL PEAK 23(17Q22) WILD-TYPE
  CLUS_1                          7                           16
  CLUS_2                         16                           28
  CLUS_3                          5                           14
  CLUS_4                         13                           40
  CLUS_5                          5                           21
  CLUS_6                          0                            8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 24(18P11.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(18P11.31) MUTATED        5     22      8     19
  DEL PEAK 24(18P11.31) WILD-TYPE     21     52     38     19
D47V1, multiclass
        clus
vv       DEL PEAK 24(18P11.31) MUTATED DEL PEAK 24(18P11.31) WILD-TYPE
  CLUS_1                             5                              21
  CLUS_2                            22                              52
  CLUS_3                             8                              38
  CLUS_4                            19                              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(18P11.31) MUTATED       15     13     13     13
  DEL PEAK 24(18P11.31) WILD-TYPE     30     36     39     24
D47V2, multiclass
        clus
vv       DEL PEAK 24(18P11.31) MUTATED DEL PEAK 24(18P11.31) WILD-TYPE
  CLUS_1                            15                              30
  CLUS_2                            13                              36
  CLUS_3                            13                              39
  CLUS_4                            13                              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(18P11.31) MUTATED        8     10      5      7      6
  DEL PEAK 24(18P11.31) WILD-TYPE     31     15     15      8     17
D47V3, multiclass
        clus
vv       DEL PEAK 24(18P11.31) MUTATED DEL PEAK 24(18P11.31) WILD-TYPE
  CLUS_1                             8                              31
  CLUS_2                            10                              15
  CLUS_3                             5                              15
  CLUS_4                             7                               8
  CLUS_5                             6                              17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(18P11.31) MUTATED       11     11      2      6      6
  DEL PEAK 24(18P11.31) WILD-TYPE     36     14     14     10     12
D47V4, multiclass
        clus
vv       DEL PEAK 24(18P11.31) MUTATED DEL PEAK 24(18P11.31) WILD-TYPE
  CLUS_1                            11                              36
  CLUS_2                            11                              14
  CLUS_3                             2                              14
  CLUS_4                             6                              10
  CLUS_5                             6                              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(18P11.31) MUTATED        8      7     14     12     12
  DEL PEAK 24(18P11.31) WILD-TYPE     31     19     29     27     18
D47V5, multiclass
        clus
vv       DEL PEAK 24(18P11.31) MUTATED DEL PEAK 24(18P11.31) WILD-TYPE
  CLUS_1                             8                              31
  CLUS_2                             7                              19
  CLUS_3                            14                              29
  CLUS_4                            12                              27
  CLUS_5                            12                              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(18P11.31) MUTATED       23     22      8
  DEL PEAK 24(18P11.31) WILD-TYPE     51     53     20
D47V6, multiclass
        clus
vv       DEL PEAK 24(18P11.31) MUTATED DEL PEAK 24(18P11.31) WILD-TYPE
  CLUS_1                            23                              51
  CLUS_2                            22                              53
  CLUS_3                             8                              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(18P11.31) MUTATED        9     18     10      8      8
  DEL PEAK 24(18P11.31) WILD-TYPE     43     29     15     23     14
D47V7, multiclass
        clus
vv       DEL PEAK 24(18P11.31) MUTATED DEL PEAK 24(18P11.31) WILD-TYPE
  CLUS_1                             9                              43
  CLUS_2                            18                              29
  CLUS_3                            10                              15
  CLUS_4                             8                              23
  CLUS_5                             8                              14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(18P11.31) MUTATED       30     14      9
  DEL PEAK 24(18P11.31) WILD-TYPE     72     28     24
D47V8, multiclass
        clus
vv       DEL PEAK 24(18P11.31) MUTATED DEL PEAK 24(18P11.31) WILD-TYPE
  CLUS_1                            30                              72
  CLUS_2                            14                              28
  CLUS_3                             9                              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(18P11.31) MUTATED       10      0      8      5     13     12
  DEL PEAK 24(18P11.31) WILD-TYPE     17     11     19      8     38     15
                                 vv
clus                              CLUS_7
  DEL PEAK 24(18P11.31) MUTATED        4
  DEL PEAK 24(18P11.31) WILD-TYPE     13
D47V9, multiclass
        clus
vv       DEL PEAK 24(18P11.31) MUTATED DEL PEAK 24(18P11.31) WILD-TYPE
  CLUS_1                            10                              17
  CLUS_2                             0                              11
  CLUS_3                             8                              19
  CLUS_4                             5                               8
  CLUS_5                            13                              38
  CLUS_6                            12                              15
  CLUS_7                             4                              13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(18P11.31) MUTATED        5     12      9     18      8      0
  DEL PEAK 24(18P11.31) WILD-TYPE     18     32     10     35     18      8
D47V10, multiclass
        clus
vv       DEL PEAK 24(18P11.31) MUTATED DEL PEAK 24(18P11.31) WILD-TYPE
  CLUS_1                             5                              18
  CLUS_2                            12                              32
  CLUS_3                             9                              10
  CLUS_4                            18                              35
  CLUS_5                             8                              18
  CLUS_6                             0                               8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 25(18Q21.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(18Q21.2) MUTATED       18     70     10     28
  DEL PEAK 25(18Q21.2) WILD-TYPE      8      4     36     10
D48V1, multiclass
        clus
vv       DEL PEAK 25(18Q21.2) MUTATED DEL PEAK 25(18Q21.2) WILD-TYPE
  CLUS_1                           18                              8
  CLUS_2                           70                              4
  CLUS_3                           10                             36
  CLUS_4                           28                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(18Q21.2) MUTATED       37     23     47     18
  DEL PEAK 25(18Q21.2) WILD-TYPE      8     26      5     19
D48V2, multiclass
        clus
vv       DEL PEAK 25(18Q21.2) MUTATED DEL PEAK 25(18Q21.2) WILD-TYPE
  CLUS_1                           37                              8
  CLUS_2                           23                             26
  CLUS_3                           47                              5
  CLUS_4                           18                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(18Q21.2) MUTATED       31     18     10     10     16
  DEL PEAK 25(18Q21.2) WILD-TYPE      8      7     10      5      7
D48V3, multiclass
        clus
vv       DEL PEAK 25(18Q21.2) MUTATED DEL PEAK 25(18Q21.2) WILD-TYPE
  CLUS_1                           31                              8
  CLUS_2                           18                              7
  CLUS_3                           10                             10
  CLUS_4                           10                              5
  CLUS_5                           16                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(18Q21.2) MUTATED       33     19      9     10     14
  DEL PEAK 25(18Q21.2) WILD-TYPE     14      6      7      6      4
D48V4, multiclass
        clus
vv       DEL PEAK 25(18Q21.2) MUTATED DEL PEAK 25(18Q21.2) WILD-TYPE
  CLUS_1                           33                             14
  CLUS_2                           19                              6
  CLUS_3                            9                              7
  CLUS_4                           10                              6
  CLUS_5                           14                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(18Q21.2) MUTATED       31     14     39     23     13
  DEL PEAK 25(18Q21.2) WILD-TYPE      8     12      4     16     17
D48V5, multiclass
        clus
vv       DEL PEAK 25(18Q21.2) MUTATED DEL PEAK 25(18Q21.2) WILD-TYPE
  CLUS_1                           31                              8
  CLUS_2                           14                             12
  CLUS_3                           39                              4
  CLUS_4                           23                             16
  CLUS_5                           13                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(18Q21.2) MUTATED       51     60      9
  DEL PEAK 25(18Q21.2) WILD-TYPE     23     15     19
D48V6, multiclass
        clus
vv       DEL PEAK 25(18Q21.2) MUTATED DEL PEAK 25(18Q21.2) WILD-TYPE
  CLUS_1                           51                             23
  CLUS_2                           60                             15
  CLUS_3                            9                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(18Q21.2) MUTATED       46     27     19     14     14
  DEL PEAK 25(18Q21.2) WILD-TYPE      6     20      6     17      8
D48V7, multiclass
        clus
vv       DEL PEAK 25(18Q21.2) MUTATED DEL PEAK 25(18Q21.2) WILD-TYPE
  CLUS_1                           46                              6
  CLUS_2                           27                             20
  CLUS_3                           19                              6
  CLUS_4                           14                             17
  CLUS_5                           14                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(18Q21.2) MUTATED       82     25     13
  DEL PEAK 25(18Q21.2) WILD-TYPE     20     17     20
D48V8, multiclass
        clus
vv       DEL PEAK 25(18Q21.2) MUTATED DEL PEAK 25(18Q21.2) WILD-TYPE
  CLUS_1                           82                             20
  CLUS_2                           25                             17
  CLUS_3                           13                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(18Q21.2) MUTATED       18      9     16      6     44     18
  DEL PEAK 25(18Q21.2) WILD-TYPE      9      2     11      7      7      9
                                vv
clus                             CLUS_7
  DEL PEAK 25(18Q21.2) MUTATED        6
  DEL PEAK 25(18Q21.2) WILD-TYPE     11
D48V9, multiclass
        clus
vv       DEL PEAK 25(18Q21.2) MUTATED DEL PEAK 25(18Q21.2) WILD-TYPE
  CLUS_1                           18                              9
  CLUS_2                            9                              2
  CLUS_3                           16                             11
  CLUS_4                            6                              7
  CLUS_5                           44                              7
  CLUS_6                           18                              9
  CLUS_7                            6                             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(18Q21.2) MUTATED       20     38     12     36     11      0
  DEL PEAK 25(18Q21.2) WILD-TYPE      3      6      7     17     15      8
D48V10, multiclass
        clus
vv       DEL PEAK 25(18Q21.2) MUTATED DEL PEAK 25(18Q21.2) WILD-TYPE
  CLUS_1                           20                              3
  CLUS_2                           38                              6
  CLUS_3                           12                              7
  CLUS_4                           36                             17
  CLUS_5                           11                             15
  CLUS_6                            0                              8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 26(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(19P13.3) MUTATED        7     24      0      5
  DEL PEAK 26(19P13.3) WILD-TYPE     19     50     46     33
D49V1, multiclass
        clus
vv       DEL PEAK 26(19P13.3) MUTATED DEL PEAK 26(19P13.3) WILD-TYPE
  CLUS_1                            7                             19
  CLUS_2                           24                             50
  CLUS_3                            0                             46
  CLUS_4                            5                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(19P13.3) MUTATED       10      1     22      3
  DEL PEAK 26(19P13.3) WILD-TYPE     35     48     30     34
D49V2, multiclass
        clus
vv       DEL PEAK 26(19P13.3) MUTATED DEL PEAK 26(19P13.3) WILD-TYPE
  CLUS_1                           10                             35
  CLUS_2                            1                             48
  CLUS_3                           22                             30
  CLUS_4                            3                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(19P13.3) MUTATED        7      3      4      2      6
  DEL PEAK 26(19P13.3) WILD-TYPE     32     22     16     13     17
D49V3, multiclass
        clus
vv       DEL PEAK 26(19P13.3) MUTATED DEL PEAK 26(19P13.3) WILD-TYPE
  CLUS_1                            7                             32
  CLUS_2                            3                             22
  CLUS_3                            4                             16
  CLUS_4                            2                             13
  CLUS_5                            6                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(19P13.3) MUTATED        5      4      3      4      6
  DEL PEAK 26(19P13.3) WILD-TYPE     42     21     13     12     12
D49V4, multiclass
        clus
vv       DEL PEAK 26(19P13.3) MUTATED DEL PEAK 26(19P13.3) WILD-TYPE
  CLUS_1                            5                             42
  CLUS_2                            4                             21
  CLUS_3                            3                             13
  CLUS_4                            4                             12
  CLUS_5                            6                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(19P13.3) MUTATED        7      2     20      3      4
  DEL PEAK 26(19P13.3) WILD-TYPE     32     24     23     36     26
D49V5, multiclass
        clus
vv       DEL PEAK 26(19P13.3) MUTATED DEL PEAK 26(19P13.3) WILD-TYPE
  CLUS_1                            7                             32
  CLUS_2                            2                             24
  CLUS_3                           20                             23
  CLUS_4                            3                             36
  CLUS_5                            4                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(19P13.3) MUTATED       11     24      1
  DEL PEAK 26(19P13.3) WILD-TYPE     63     51     27
D49V6, multiclass
        clus
vv       DEL PEAK 26(19P13.3) MUTATED DEL PEAK 26(19P13.3) WILD-TYPE
  CLUS_1                           11                             63
  CLUS_2                           24                             51
  CLUS_3                            1                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(19P13.3) MUTATED       13      7      4      9      3
  DEL PEAK 26(19P13.3) WILD-TYPE     39     40     21     22     19
D49V7, multiclass
        clus
vv       DEL PEAK 26(19P13.3) MUTATED DEL PEAK 26(19P13.3) WILD-TYPE
  CLUS_1                           13                             39
  CLUS_2                            7                             40
  CLUS_3                            4                             21
  CLUS_4                            9                             22
  CLUS_5                            3                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(19P13.3) MUTATED       29      4      3
  DEL PEAK 26(19P13.3) WILD-TYPE     73     38     30
D49V8, multiclass
        clus
vv       DEL PEAK 26(19P13.3) MUTATED DEL PEAK 26(19P13.3) WILD-TYPE
  CLUS_1                           29                             73
  CLUS_2                            4                             38
  CLUS_3                            3                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(19P13.3) MUTATED        5      4      4      2     17      2
  DEL PEAK 26(19P13.3) WILD-TYPE     22      7     23     11     34     25
                                vv
clus                             CLUS_7
  DEL PEAK 26(19P13.3) MUTATED        1
  DEL PEAK 26(19P13.3) WILD-TYPE     16
D49V9, multiclass
        clus
vv       DEL PEAK 26(19P13.3) MUTATED DEL PEAK 26(19P13.3) WILD-TYPE
  CLUS_1                            5                             22
  CLUS_2                            4                              7
  CLUS_3                            4                             23
  CLUS_4                            2                             11
  CLUS_5                           17                             34
  CLUS_6                            2                             25
  CLUS_7                            1                             16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(19P13.3) MUTATED        5     14      5      9      2      0
  DEL PEAK 26(19P13.3) WILD-TYPE     18     30     14     44     24      8
D49V10, multiclass
        clus
vv       DEL PEAK 26(19P13.3) MUTATED DEL PEAK 26(19P13.3) WILD-TYPE
  CLUS_1                            5                             18
  CLUS_2                           14                             30
  CLUS_3                            5                             14
  CLUS_4                            9                             44
  CLUS_5                            2                             24
  CLUS_6                            0                              8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 27(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(19P13.2) MUTATED        6     17      0      5
  DEL PEAK 27(19P13.2) WILD-TYPE     20     57     46     33
D50V1, multiclass
        clus
vv       DEL PEAK 27(19P13.2) MUTATED DEL PEAK 27(19P13.2) WILD-TYPE
  CLUS_1                            6                             20
  CLUS_2                           17                             57
  CLUS_3                            0                             46
  CLUS_4                            5                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(19P13.2) MUTATED        6      1     19      2
  DEL PEAK 27(19P13.2) WILD-TYPE     39     48     33     35
D50V2, multiclass
        clus
vv       DEL PEAK 27(19P13.2) MUTATED DEL PEAK 27(19P13.2) WILD-TYPE
  CLUS_1                            6                             39
  CLUS_2                            1                             48
  CLUS_3                           19                             33
  CLUS_4                            2                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(19P13.2) MUTATED        5      3      3      1      6
  DEL PEAK 27(19P13.2) WILD-TYPE     34     22     17     14     17
D50V3, multiclass
        clus
vv       DEL PEAK 27(19P13.2) MUTATED DEL PEAK 27(19P13.2) WILD-TYPE
  CLUS_1                            5                             34
  CLUS_2                            3                             22
  CLUS_3                            3                             17
  CLUS_4                            1                             14
  CLUS_5                            6                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(19P13.2) MUTATED        3      4      2      3      6
  DEL PEAK 27(19P13.2) WILD-TYPE     44     21     14     13     12
D50V4, multiclass
        clus
vv       DEL PEAK 27(19P13.2) MUTATED DEL PEAK 27(19P13.2) WILD-TYPE
  CLUS_1                            3                             44
  CLUS_2                            4                             21
  CLUS_3                            2                             14
  CLUS_4                            3                             13
  CLUS_5                            6                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(19P13.2) MUTATED        4      0     17      3      3
  DEL PEAK 27(19P13.2) WILD-TYPE     35     26     26     36     27
D50V5, multiclass
        clus
vv       DEL PEAK 27(19P13.2) MUTATED DEL PEAK 27(19P13.2) WILD-TYPE
  CLUS_1                            4                             35
  CLUS_2                            0                             26
  CLUS_3                           17                             26
  CLUS_4                            3                             36
  CLUS_5                            3                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(19P13.2) MUTATED        9     18      0
  DEL PEAK 27(19P13.2) WILD-TYPE     65     57     28
D50V6, multiclass
        clus
vv       DEL PEAK 27(19P13.2) MUTATED DEL PEAK 27(19P13.2) WILD-TYPE
  CLUS_1                            9                             65
  CLUS_2                           18                             57
  CLUS_3                            0                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(19P13.2) MUTATED        9      6      4      8      0
  DEL PEAK 27(19P13.2) WILD-TYPE     43     41     21     23     22
D50V7, multiclass
        clus
vv       DEL PEAK 27(19P13.2) MUTATED DEL PEAK 27(19P13.2) WILD-TYPE
  CLUS_1                            9                             43
  CLUS_2                            6                             41
  CLUS_3                            4                             21
  CLUS_4                            8                             23
  CLUS_5                            0                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(19P13.2) MUTATED       24      3      0
  DEL PEAK 27(19P13.2) WILD-TYPE     78     39     33
D50V8, multiclass
        clus
vv       DEL PEAK 27(19P13.2) MUTATED DEL PEAK 27(19P13.2) WILD-TYPE
  CLUS_1                           24                             78
  CLUS_2                            3                             39
  CLUS_3                            0                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(19P13.2) MUTATED        3      3      3      2     15      0
  DEL PEAK 27(19P13.2) WILD-TYPE     24      8     24     11     36     27
                                vv
clus                             CLUS_7
  DEL PEAK 27(19P13.2) MUTATED        0
  DEL PEAK 27(19P13.2) WILD-TYPE     17
D50V9, multiclass
        clus
vv       DEL PEAK 27(19P13.2) MUTATED DEL PEAK 27(19P13.2) WILD-TYPE
  CLUS_1                            3                             24
  CLUS_2                            3                              8
  CLUS_3                            3                             24
  CLUS_4                            2                             11
  CLUS_5                           15                             36
  CLUS_6                            0                             27
  CLUS_7                            0                             17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(19P13.2) MUTATED        3     12      5      6      0      0
  DEL PEAK 27(19P13.2) WILD-TYPE     20     32     14     47     26      8
D50V10, multiclass
        clus
vv       DEL PEAK 27(19P13.2) MUTATED DEL PEAK 27(19P13.2) WILD-TYPE
  CLUS_1                            3                             20
  CLUS_2                           12                             32
  CLUS_3                            5                             14
  CLUS_4                            6                             47
  CLUS_5                            0                             26
  CLUS_6                            0                              8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 28(19Q13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(19Q13.33) MUTATED        5     13      1      3
  DEL PEAK 28(19Q13.33) WILD-TYPE     21     61     45     35
D51V1, multiclass
        clus
vv       DEL PEAK 28(19Q13.33) MUTATED DEL PEAK 28(19Q13.33) WILD-TYPE
  CLUS_1                             5                              21
  CLUS_2                            13                              61
  CLUS_3                             1                              45
  CLUS_4                             3                              35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(19Q13.33) MUTATED        9      2      8      3
  DEL PEAK 28(19Q13.33) WILD-TYPE     36     47     44     34
D51V2, multiclass
        clus
vv       DEL PEAK 28(19Q13.33) MUTATED DEL PEAK 28(19Q13.33) WILD-TYPE
  CLUS_1                             9                              36
  CLUS_2                             2                              47
  CLUS_3                             8                              44
  CLUS_4                             3                              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(19Q13.33) MUTATED        7      2      2      1      5
  DEL PEAK 28(19Q13.33) WILD-TYPE     32     23     18     14     18
D51V3, multiclass
        clus
vv       DEL PEAK 28(19Q13.33) MUTATED DEL PEAK 28(19Q13.33) WILD-TYPE
  CLUS_1                             7                              32
  CLUS_2                             2                              23
  CLUS_3                             2                              18
  CLUS_4                             1                              14
  CLUS_5                             5                              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(19Q13.33) MUTATED        5      2      3      3      4
  DEL PEAK 28(19Q13.33) WILD-TYPE     42     23     13     13     14
D51V4, multiclass
        clus
vv       DEL PEAK 28(19Q13.33) MUTATED DEL PEAK 28(19Q13.33) WILD-TYPE
  CLUS_1                             5                              42
  CLUS_2                             2                              23
  CLUS_3                             3                              13
  CLUS_4                             3                              13
  CLUS_5                             4                              14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(19Q13.33) MUTATED        6      1      8      2      4
  DEL PEAK 28(19Q13.33) WILD-TYPE     33     25     35     37     26
D51V5, multiclass
        clus
vv       DEL PEAK 28(19Q13.33) MUTATED DEL PEAK 28(19Q13.33) WILD-TYPE
  CLUS_1                             6                              33
  CLUS_2                             1                              25
  CLUS_3                             8                              35
  CLUS_4                             2                              37
  CLUS_5                             4                              26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(19Q13.33) MUTATED        8     12      1
  DEL PEAK 28(19Q13.33) WILD-TYPE     66     63     27
D51V6, multiclass
        clus
vv       DEL PEAK 28(19Q13.33) MUTATED DEL PEAK 28(19Q13.33) WILD-TYPE
  CLUS_1                             8                              66
  CLUS_2                            12                              63
  CLUS_3                             1                              27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(19Q13.33) MUTATED        9      7      1      3      1
  DEL PEAK 28(19Q13.33) WILD-TYPE     43     40     24     28     21
D51V7, multiclass
        clus
vv       DEL PEAK 28(19Q13.33) MUTATED DEL PEAK 28(19Q13.33) WILD-TYPE
  CLUS_1                             9                              43
  CLUS_2                             7                              40
  CLUS_3                             1                              24
  CLUS_4                             3                              28
  CLUS_5                             1                              21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(19Q13.33) MUTATED       17      2      2
  DEL PEAK 28(19Q13.33) WILD-TYPE     85     40     31
D51V8, multiclass
        clus
vv       DEL PEAK 28(19Q13.33) MUTATED DEL PEAK 28(19Q13.33) WILD-TYPE
  CLUS_1                            17                              85
  CLUS_2                             2                              40
  CLUS_3                             2                              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(19Q13.33) MUTATED        3      2      3      2      8      2
  DEL PEAK 28(19Q13.33) WILD-TYPE     24      9     24     11     43     25
                                 vv
clus                              CLUS_7
  DEL PEAK 28(19Q13.33) MUTATED        0
  DEL PEAK 28(19Q13.33) WILD-TYPE     17
D51V9, multiclass
        clus
vv       DEL PEAK 28(19Q13.33) MUTATED DEL PEAK 28(19Q13.33) WILD-TYPE
  CLUS_1                             3                              24
  CLUS_2                             2                               9
  CLUS_3                             3                              24
  CLUS_4                             2                              11
  CLUS_5                             8                              43
  CLUS_6                             2                              25
  CLUS_7                             0                              17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(19Q13.33) MUTATED        4      7      4      3      2      0
  DEL PEAK 28(19Q13.33) WILD-TYPE     19     37     15     50     24      8
D51V10, multiclass
        clus
vv       DEL PEAK 28(19Q13.33) MUTATED DEL PEAK 28(19Q13.33) WILD-TYPE
  CLUS_1                             4                              19
  CLUS_2                             7                              37
  CLUS_3                             4                              15
  CLUS_4                             3                              50
  CLUS_5                             2                              24
  CLUS_6                             0                               8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 29(21Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(21Q11.2) MUTATED        8     35      3     16
  DEL PEAK 29(21Q11.2) WILD-TYPE     18     39     43     22
D52V1, multiclass
        clus
vv       DEL PEAK 29(21Q11.2) MUTATED DEL PEAK 29(21Q11.2) WILD-TYPE
  CLUS_1                            8                             18
  CLUS_2                           35                             39
  CLUS_3                            3                             43
  CLUS_4                           16                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(21Q11.2) MUTATED       18     10     26      7
  DEL PEAK 29(21Q11.2) WILD-TYPE     27     39     26     30
D52V2, multiclass
        clus
vv       DEL PEAK 29(21Q11.2) MUTATED DEL PEAK 29(21Q11.2) WILD-TYPE
  CLUS_1                           18                             27
  CLUS_2                           10                             39
  CLUS_3                           26                             26
  CLUS_4                            7                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(21Q11.2) MUTATED       14      6      5      8      9
  DEL PEAK 29(21Q11.2) WILD-TYPE     25     19     15      7     14
D52V3, multiclass
        clus
vv       DEL PEAK 29(21Q11.2) MUTATED DEL PEAK 29(21Q11.2) WILD-TYPE
  CLUS_1                           14                             25
  CLUS_2                            6                             19
  CLUS_3                            5                             15
  CLUS_4                            8                              7
  CLUS_5                            9                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(21Q11.2) MUTATED       15      7      3      8      9
  DEL PEAK 29(21Q11.2) WILD-TYPE     32     18     13      8      9
D52V4, multiclass
        clus
vv       DEL PEAK 29(21Q11.2) MUTATED DEL PEAK 29(21Q11.2) WILD-TYPE
  CLUS_1                           15                             32
  CLUS_2                            7                             18
  CLUS_3                            3                             13
  CLUS_4                            8                              8
  CLUS_5                            9                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(21Q11.2) MUTATED       18      6     17      9      8
  DEL PEAK 29(21Q11.2) WILD-TYPE     21     20     26     30     22
D52V5, multiclass
        clus
vv       DEL PEAK 29(21Q11.2) MUTATED DEL PEAK 29(21Q11.2) WILD-TYPE
  CLUS_1                           18                             21
  CLUS_2                            6                             20
  CLUS_3                           17                             26
  CLUS_4                            9                             30
  CLUS_5                            8                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(21Q11.2) MUTATED       25     29      4
  DEL PEAK 29(21Q11.2) WILD-TYPE     49     46     24
D52V6, multiclass
        clus
vv       DEL PEAK 29(21Q11.2) MUTATED DEL PEAK 29(21Q11.2) WILD-TYPE
  CLUS_1                           25                             49
  CLUS_2                           29                             46
  CLUS_3                            4                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(21Q11.2) MUTATED       20     11      8     14      5
  DEL PEAK 29(21Q11.2) WILD-TYPE     32     36     17     17     17
D52V7, multiclass
        clus
vv       DEL PEAK 29(21Q11.2) MUTATED DEL PEAK 29(21Q11.2) WILD-TYPE
  CLUS_1                           20                             32
  CLUS_2                           11                             36
  CLUS_3                            8                             17
  CLUS_4                           14                             17
  CLUS_5                            5                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(21Q11.2) MUTATED       41     12      5
  DEL PEAK 29(21Q11.2) WILD-TYPE     61     30     28
D52V8, multiclass
        clus
vv       DEL PEAK 29(21Q11.2) MUTATED DEL PEAK 29(21Q11.2) WILD-TYPE
  CLUS_1                           41                             61
  CLUS_2                           12                             30
  CLUS_3                            5                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(21Q11.2) MUTATED        9      1      8      3     24      9
  DEL PEAK 29(21Q11.2) WILD-TYPE     18     10     19     10     27     18
                                vv
clus                             CLUS_7
  DEL PEAK 29(21Q11.2) MUTATED        2
  DEL PEAK 29(21Q11.2) WILD-TYPE     15
D52V9, multiclass
        clus
vv       DEL PEAK 29(21Q11.2) MUTATED DEL PEAK 29(21Q11.2) WILD-TYPE
  CLUS_1                            9                             18
  CLUS_2                            1                             10
  CLUS_3                            8                             19
  CLUS_4                            3                             10
  CLUS_5                           24                             27
  CLUS_6                            9                             18
  CLUS_7                            2                             15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(21Q11.2) MUTATED        8     17      8     17      4      2
  DEL PEAK 29(21Q11.2) WILD-TYPE     15     27     11     36     22      6
D52V10, multiclass
        clus
vv       DEL PEAK 29(21Q11.2) MUTATED DEL PEAK 29(21Q11.2) WILD-TYPE
  CLUS_1                            8                             15
  CLUS_2                           17                             27
  CLUS_3                            8                             11
  CLUS_4                           17                             36
  CLUS_5                            4                             22
  CLUS_6                            2                              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 30(22Q13.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(22Q13.31) MUTATED        1     42      2     15
  DEL PEAK 30(22Q13.31) WILD-TYPE     25     32     44     23
D53V1, multiclass
        clus
vv       DEL PEAK 30(22Q13.31) MUTATED DEL PEAK 30(22Q13.31) WILD-TYPE
  CLUS_1                             1                              25
  CLUS_2                            42                              32
  CLUS_3                             2                              44
  CLUS_4                            15                              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(22Q13.31) MUTATED       20     10     26      4
  DEL PEAK 30(22Q13.31) WILD-TYPE     25     39     26     33
D53V2, multiclass
        clus
vv       DEL PEAK 30(22Q13.31) MUTATED DEL PEAK 30(22Q13.31) WILD-TYPE
  CLUS_1                            20                              25
  CLUS_2                            10                              39
  CLUS_3                            26                              26
  CLUS_4                             4                              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(22Q13.31) MUTATED       16      5      5      5      8
  DEL PEAK 30(22Q13.31) WILD-TYPE     23     20     15     10     15
D53V3, multiclass
        clus
vv       DEL PEAK 30(22Q13.31) MUTATED DEL PEAK 30(22Q13.31) WILD-TYPE
  CLUS_1                            16                              23
  CLUS_2                             5                              20
  CLUS_3                             5                              15
  CLUS_4                             5                              10
  CLUS_5                             8                              15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(22Q13.31) MUTATED       17      6      5      5      6
  DEL PEAK 30(22Q13.31) WILD-TYPE     30     19     11     11     12
D53V4, multiclass
        clus
vv       DEL PEAK 30(22Q13.31) MUTATED DEL PEAK 30(22Q13.31) WILD-TYPE
  CLUS_1                            17                              30
  CLUS_2                             6                              19
  CLUS_3                             5                              11
  CLUS_4                             5                              11
  CLUS_5                             6                              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(22Q13.31) MUTATED       18      7     18     10      4
  DEL PEAK 30(22Q13.31) WILD-TYPE     21     19     25     29     26
D53V5, multiclass
        clus
vv       DEL PEAK 30(22Q13.31) MUTATED DEL PEAK 30(22Q13.31) WILD-TYPE
  CLUS_1                            18                              21
  CLUS_2                             7                              19
  CLUS_3                            18                              25
  CLUS_4                            10                              29
  CLUS_5                             4                              26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(22Q13.31) MUTATED       26     27      4
  DEL PEAK 30(22Q13.31) WILD-TYPE     48     48     24
D53V6, multiclass
        clus
vv       DEL PEAK 30(22Q13.31) MUTATED DEL PEAK 30(22Q13.31) WILD-TYPE
  CLUS_1                            26                              48
  CLUS_2                            27                              48
  CLUS_3                             4                              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(22Q13.31) MUTATED       25     11     10      8      3
  DEL PEAK 30(22Q13.31) WILD-TYPE     27     36     15     23     19
D53V7, multiclass
        clus
vv       DEL PEAK 30(22Q13.31) MUTATED DEL PEAK 30(22Q13.31) WILD-TYPE
  CLUS_1                            25                              27
  CLUS_2                            11                              36
  CLUS_3                            10                              15
  CLUS_4                             8                              23
  CLUS_5                             3                              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(22Q13.31) MUTATED       41     11      5
  DEL PEAK 30(22Q13.31) WILD-TYPE     61     31     28
D53V8, multiclass
        clus
vv       DEL PEAK 30(22Q13.31) MUTATED DEL PEAK 30(22Q13.31) WILD-TYPE
  CLUS_1                            41                              61
  CLUS_2                            11                              31
  CLUS_3                             5                              28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(22Q13.31) MUTATED        8      2      7      1     28      8
  DEL PEAK 30(22Q13.31) WILD-TYPE     19      9     20     12     23     19
                                 vv
clus                              CLUS_7
  DEL PEAK 30(22Q13.31) MUTATED        2
  DEL PEAK 30(22Q13.31) WILD-TYPE     15
D53V9, multiclass
        clus
vv       DEL PEAK 30(22Q13.31) MUTATED DEL PEAK 30(22Q13.31) WILD-TYPE
  CLUS_1                             8                              19
  CLUS_2                             2                               9
  CLUS_3                             7                              20
  CLUS_4                             1                              12
  CLUS_5                            28                              23
  CLUS_6                             8                              19
  CLUS_7                             2                              15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(22Q13.31) MUTATED       10     18      6     18      2      2
  DEL PEAK 30(22Q13.31) WILD-TYPE     13     26     13     35     24      6
D53V10, multiclass
        clus
vv       DEL PEAK 30(22Q13.31) MUTATED DEL PEAK 30(22Q13.31) WILD-TYPE
  CLUS_1                            10                              13
  CLUS_2                            18                              26
  CLUS_3                             6                              13
  CLUS_4                            18                              35
  CLUS_5                             2                              24
  CLUS_6                             2                               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 31(22Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(22Q13.32) MUTATED        1     42      2     16
  DEL PEAK 31(22Q13.32) WILD-TYPE     25     32     44     22
D54V1, multiclass
        clus
vv       DEL PEAK 31(22Q13.32) MUTATED DEL PEAK 31(22Q13.32) WILD-TYPE
  CLUS_1                             1                              25
  CLUS_2                            42                              32
  CLUS_3                             2                              44
  CLUS_4                            16                              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(22Q13.32) MUTATED       21     11     25      4
  DEL PEAK 31(22Q13.32) WILD-TYPE     24     38     27     33
D54V2, multiclass
        clus
vv       DEL PEAK 31(22Q13.32) MUTATED DEL PEAK 31(22Q13.32) WILD-TYPE
  CLUS_1                            21                              24
  CLUS_2                            11                              38
  CLUS_3                            25                              27
  CLUS_4                             4                              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(22Q13.32) MUTATED       16      7      5      5      8
  DEL PEAK 31(22Q13.32) WILD-TYPE     23     18     15     10     15
D54V3, multiclass
        clus
vv       DEL PEAK 31(22Q13.32) MUTATED DEL PEAK 31(22Q13.32) WILD-TYPE
  CLUS_1                            16                              23
  CLUS_2                             7                              18
  CLUS_3                             5                              15
  CLUS_4                             5                              10
  CLUS_5                             8                              15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(22Q13.32) MUTATED       17      7      5      5      7
  DEL PEAK 31(22Q13.32) WILD-TYPE     30     18     11     11     11
D54V4, multiclass
        clus
vv       DEL PEAK 31(22Q13.32) MUTATED DEL PEAK 31(22Q13.32) WILD-TYPE
  CLUS_1                            17                              30
  CLUS_2                             7                              18
  CLUS_3                             5                              11
  CLUS_4                             5                              11
  CLUS_5                             7                              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(22Q13.32) MUTATED       17      8     18     11      4
  DEL PEAK 31(22Q13.32) WILD-TYPE     22     18     25     28     26
D54V5, multiclass
        clus
vv       DEL PEAK 31(22Q13.32) MUTATED DEL PEAK 31(22Q13.32) WILD-TYPE
  CLUS_1                            17                              22
  CLUS_2                             8                              18
  CLUS_3                            18                              25
  CLUS_4                            11                              28
  CLUS_5                             4                              26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(22Q13.32) MUTATED       27     27      4
  DEL PEAK 31(22Q13.32) WILD-TYPE     47     48     24
D54V6, multiclass
        clus
vv       DEL PEAK 31(22Q13.32) MUTATED DEL PEAK 31(22Q13.32) WILD-TYPE
  CLUS_1                            27                              47
  CLUS_2                            27                              48
  CLUS_3                             4                              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(22Q13.32) MUTATED       24     11     11      8      4
  DEL PEAK 31(22Q13.32) WILD-TYPE     28     36     14     23     18
D54V7, multiclass
        clus
vv       DEL PEAK 31(22Q13.32) MUTATED DEL PEAK 31(22Q13.32) WILD-TYPE
  CLUS_1                            24                              28
  CLUS_2                            11                              36
  CLUS_3                            11                              14
  CLUS_4                             8                              23
  CLUS_5                             4                              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(22Q13.32) MUTATED       39     12      7
  DEL PEAK 31(22Q13.32) WILD-TYPE     63     30     26
D54V8, multiclass
        clus
vv       DEL PEAK 31(22Q13.32) MUTATED DEL PEAK 31(22Q13.32) WILD-TYPE
  CLUS_1                            39                              63
  CLUS_2                            12                              30
  CLUS_3                             7                              26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(22Q13.32) MUTATED        8      2      8      1     27      9
  DEL PEAK 31(22Q13.32) WILD-TYPE     19      9     19     12     24     18
                                 vv
clus                              CLUS_7
  DEL PEAK 31(22Q13.32) MUTATED        2
  DEL PEAK 31(22Q13.32) WILD-TYPE     15
D54V9, multiclass
        clus
vv       DEL PEAK 31(22Q13.32) MUTATED DEL PEAK 31(22Q13.32) WILD-TYPE
  CLUS_1                             8                              19
  CLUS_2                             2                               9
  CLUS_3                             8                              19
  CLUS_4                             1                              12
  CLUS_5                            27                              24
  CLUS_6                             9                              18
  CLUS_7                             2                              15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(22Q13.32) MUTATED        9     18      5     19      4      2
  DEL PEAK 31(22Q13.32) WILD-TYPE     14     26     14     34     22      6
D54V10, multiclass
        clus
vv       DEL PEAK 31(22Q13.32) MUTATED DEL PEAK 31(22Q13.32) WILD-TYPE
  CLUS_1                             9                              14
  CLUS_2                            18                              26
  CLUS_3                             5                              14
  CLUS_4                            19                              34
  CLUS_5                             4                              22
  CLUS_6                             2                               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 32(XP21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(XP21.1) MUTATED        3     17      1      7
  DEL PEAK 32(XP21.1) WILD-TYPE     23     57     45     31
D55V1, multiclass
        clus
vv       DEL PEAK 32(XP21.1) MUTATED DEL PEAK 32(XP21.1) WILD-TYPE
  CLUS_1                           3                            23
  CLUS_2                          17                            57
  CLUS_3                           1                            45
  CLUS_4                           7                            31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(XP21.1) MUTATED        9      5     11      3
  DEL PEAK 32(XP21.1) WILD-TYPE     36     44     41     34
D55V2, multiclass
        clus
vv       DEL PEAK 32(XP21.1) MUTATED DEL PEAK 32(XP21.1) WILD-TYPE
  CLUS_1                           9                            36
  CLUS_2                           5                            44
  CLUS_3                          11                            41
  CLUS_4                           3                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(XP21.1) MUTATED        8      0      1      1      5
  DEL PEAK 32(XP21.1) WILD-TYPE     31     25     19     14     18
D55V3, multiclass
        clus
vv       DEL PEAK 32(XP21.1) MUTATED DEL PEAK 32(XP21.1) WILD-TYPE
  CLUS_1                           8                            31
  CLUS_2                           0                            25
  CLUS_3                           1                            19
  CLUS_4                           1                            14
  CLUS_5                           5                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(XP21.1) MUTATED        7      1      2      2      3
  DEL PEAK 32(XP21.1) WILD-TYPE     40     24     14     14     15
D55V4, multiclass
        clus
vv       DEL PEAK 32(XP21.1) MUTATED DEL PEAK 32(XP21.1) WILD-TYPE
  CLUS_1                           7                            40
  CLUS_2                           1                            24
  CLUS_3                           2                            14
  CLUS_4                           2                            14
  CLUS_5                           3                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(XP21.1) MUTATED        8      4      8      6      1
  DEL PEAK 32(XP21.1) WILD-TYPE     31     22     35     33     29
D55V5, multiclass
        clus
vv       DEL PEAK 32(XP21.1) MUTATED DEL PEAK 32(XP21.1) WILD-TYPE
  CLUS_1                           8                            31
  CLUS_2                           4                            22
  CLUS_3                           8                            35
  CLUS_4                           6                            33
  CLUS_5                           1                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(XP21.1) MUTATED        8     15      4
  DEL PEAK 32(XP21.1) WILD-TYPE     66     60     24
D55V6, multiclass
        clus
vv       DEL PEAK 32(XP21.1) MUTATED DEL PEAK 32(XP21.1) WILD-TYPE
  CLUS_1                           8                            66
  CLUS_2                          15                            60
  CLUS_3                           4                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(XP21.1) MUTATED       14      3      3      6      1
  DEL PEAK 32(XP21.1) WILD-TYPE     38     44     22     25     21
D55V7, multiclass
        clus
vv       DEL PEAK 32(XP21.1) MUTATED DEL PEAK 32(XP21.1) WILD-TYPE
  CLUS_1                          14                            38
  CLUS_2                           3                            44
  CLUS_3                           3                            22
  CLUS_4                           6                            25
  CLUS_5                           1                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(XP21.1) MUTATED       18      5      4
  DEL PEAK 32(XP21.1) WILD-TYPE     84     37     29
D55V8, multiclass
        clus
vv       DEL PEAK 32(XP21.1) MUTATED DEL PEAK 32(XP21.1) WILD-TYPE
  CLUS_1                          18                            84
  CLUS_2                           5                            37
  CLUS_3                           4                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(XP21.1) MUTATED        3      3      2      1     14      1
  DEL PEAK 32(XP21.1) WILD-TYPE     24      8     25     12     37     26
                               vv
clus                            CLUS_7
  DEL PEAK 32(XP21.1) MUTATED        2
  DEL PEAK 32(XP21.1) WILD-TYPE     15
D55V9, multiclass
        clus
vv       DEL PEAK 32(XP21.1) MUTATED DEL PEAK 32(XP21.1) WILD-TYPE
  CLUS_1                           3                            24
  CLUS_2                           3                             8
  CLUS_3                           2                            25
  CLUS_4                           1                            12
  CLUS_5                          14                            37
  CLUS_6                           1                            26
  CLUS_7                           2                            15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(XP21.1) MUTATED        3     13      0      6      2      2
  DEL PEAK 32(XP21.1) WILD-TYPE     20     31     19     47     24      6
D55V10, multiclass
        clus
vv       DEL PEAK 32(XP21.1) MUTATED DEL PEAK 32(XP21.1) WILD-TYPE
  CLUS_1                           3                            20
  CLUS_2                          13                            31
  CLUS_3                           0                            19
  CLUS_4                           6                            47
  CLUS_5                           2                            24
  CLUS_6                           2                             6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 33(XQ11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(XQ11.2) MUTATED        3     16      1      3
  DEL PEAK 33(XQ11.2) WILD-TYPE     23     58     45     35
D56V1, multiclass
        clus
vv       DEL PEAK 33(XQ11.2) MUTATED DEL PEAK 33(XQ11.2) WILD-TYPE
  CLUS_1                           3                            23
  CLUS_2                          16                            58
  CLUS_3                           1                            45
  CLUS_4                           3                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(XQ11.2) MUTATED        7      4     12      0
  DEL PEAK 33(XQ11.2) WILD-TYPE     38     45     40     37
D56V2, multiclass
        clus
vv       DEL PEAK 33(XQ11.2) MUTATED DEL PEAK 33(XQ11.2) WILD-TYPE
  CLUS_1                           7                            38
  CLUS_2                           4                            45
  CLUS_3                          12                            40
  CLUS_4                           0                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(XQ11.2) MUTATED       10      0      0      0      3
  DEL PEAK 33(XQ11.2) WILD-TYPE     29     25     20     15     20
D56V3, multiclass
        clus
vv       DEL PEAK 33(XQ11.2) MUTATED DEL PEAK 33(XQ11.2) WILD-TYPE
  CLUS_1                          10                            29
  CLUS_2                           0                            25
  CLUS_3                           0                            20
  CLUS_4                           0                            15
  CLUS_5                           3                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(XQ11.2) MUTATED        8      1      0      2      2
  DEL PEAK 33(XQ11.2) WILD-TYPE     39     24     16     14     16
D56V4, multiclass
        clus
vv       DEL PEAK 33(XQ11.2) MUTATED DEL PEAK 33(XQ11.2) WILD-TYPE
  CLUS_1                           8                            39
  CLUS_2                           1                            24
  CLUS_3                           0                            16
  CLUS_4                           2                            14
  CLUS_5                           2                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(XQ11.2) MUTATED        8      2      8      3      0
  DEL PEAK 33(XQ11.2) WILD-TYPE     31     24     35     36     30
D56V5, multiclass
        clus
vv       DEL PEAK 33(XQ11.2) MUTATED DEL PEAK 33(XQ11.2) WILD-TYPE
  CLUS_1                           8                            31
  CLUS_2                           2                            24
  CLUS_3                           8                            35
  CLUS_4                           3                            36
  CLUS_5                           0                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(XQ11.2) MUTATED        5     15      1
  DEL PEAK 33(XQ11.2) WILD-TYPE     69     60     27
D56V6, multiclass
        clus
vv       DEL PEAK 33(XQ11.2) MUTATED DEL PEAK 33(XQ11.2) WILD-TYPE
  CLUS_1                           5                            69
  CLUS_2                          15                            60
  CLUS_3                           1                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(XQ11.2) MUTATED       10      3      1      7      0
  DEL PEAK 33(XQ11.2) WILD-TYPE     42     44     24     24     22
D56V7, multiclass
        clus
vv       DEL PEAK 33(XQ11.2) MUTATED DEL PEAK 33(XQ11.2) WILD-TYPE
  CLUS_1                          10                            42
  CLUS_2                           3                            44
  CLUS_3                           1                            24
  CLUS_4                           7                            24
  CLUS_5                           0                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(XQ11.2) MUTATED       18      2      1
  DEL PEAK 33(XQ11.2) WILD-TYPE     84     40     32
D56V8, multiclass
        clus
vv       DEL PEAK 33(XQ11.2) MUTATED DEL PEAK 33(XQ11.2) WILD-TYPE
  CLUS_1                          18                            84
  CLUS_2                           2                            40
  CLUS_3                           1                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(XQ11.2) MUTATED        1      3      2      0     12      1
  DEL PEAK 33(XQ11.2) WILD-TYPE     26      8     25     13     39     26
                               vv
clus                            CLUS_7
  DEL PEAK 33(XQ11.2) MUTATED        1
  DEL PEAK 33(XQ11.2) WILD-TYPE     16
D56V9, multiclass
        clus
vv       DEL PEAK 33(XQ11.2) MUTATED DEL PEAK 33(XQ11.2) WILD-TYPE
  CLUS_1                           1                            26
  CLUS_2                           3                             8
  CLUS_3                           2                            25
  CLUS_4                           0                            13
  CLUS_5                          12                            39
  CLUS_6                           1                            26
  CLUS_7                           1                            16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(XQ11.2) MUTATED        3     11      2      3      0      1
  DEL PEAK 33(XQ11.2) WILD-TYPE     20     33     17     50     26      7
D56V10, multiclass
        clus
vv       DEL PEAK 33(XQ11.2) MUTATED DEL PEAK 33(XQ11.2) WILD-TYPE
  CLUS_1                           3                            20
  CLUS_2                          11                            33
  CLUS_3                           2                            17
  CLUS_4                           3                            50
  CLUS_5                           0                            26
  CLUS_6                           1                             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
