# Non-clustered (scattered) mutations all scattered mutation 
"Sample"	"A_T_coord_clusters"	"G_C_coord_clusters"	"Non_coord_clusters"	"clusters"	"mutations"	"complex"	"insertions"	"deletions"	"indels"	"substitutions"	"bases"	"A_to_T"	"A_to_G"	"A_to_C"	"A"	"a"	"T_to_A"	"T_to_C"	"T_to_G"	"T"	"t"	"G_to_C"	"G_to_T"	"G_to_A"	"G"	"g"	"C_to_G"	"C_to_A"	"C_to_T"	"C"	"c"	"tCw_to_G"	"tCw_to_A"	"tCw_to_T"	"tCw"	"tcw"	"tCw_per_mut"	"tCw_per_C"	"tcw_per_c"	"enrich_tCw"	"freq_tCw"	"wGa_to_C"	"wGa_to_T"	"wGa_to_A"	"wGa"	"wga"	"wGa_per_mut"	"wGa_per_G"	"wga_per_g"	"enrich_wGa"	"freq_wGa"	"[tCw_to_G+tCw_to_T]_per_mut"	"tCw_to_G+tCw_to_T"	"[(C_to_G)+(C_to_T)]-[(tCw_to_G)+(tCw_to_T)]"	"tcw+wga"	"c-tcw"	"Fisher_p-value_tCw"	"BH_Fisher_p-value_tCw"	"bonferroni_Fisher_p-value_tCw"	"odds_ratio_tCw"	"95%_confidence_lower_tCw"	"95%_confidence_upper_tCw"	"APOBEC_enrich"	"tCw_to_G_enrich"	"Fisher_p-value_tCw_to_G"	"BH_Fisher_p-value_tCw_to_G"	"bonferroni_Fisher_p-value_tCw_to_G"	"odds_ratio_tCw_to_G"	"tCw_to_T_enrich"	"Fisher_p-value_tCw_to_T"	"BH_Fisher_p-value_tCw_to_T"	"bonferroni_Fisher_p-value_tCw_to_T"	"odds_ratio_tCw_to_T"	"p-value_GvT_skew"	"BH_p-value_GvT_skew"	"bonferroni_p-value_GvT_skew"	"non-APOBEC_mutations"	"non-APOBEC_substitutions"	"APOBEC_MutLoad_MinEstimate"
"TCGA-AF-2687-01A-02D-1733-10"	0	0	0	0	187	0	0	3	3	184	7544	3	36	1	40	1739	2	25	0	27	1758	5	12	52	69	2032	0	8	40	48	2015	0	0	3	3	247	0.0160427807486631	0.0625	0.12258064516129	0.509868421052632	0.0121457489878543	1	1	3	5	273	0.0267379679144385	0.072463768115942	0.134350393700787	0.539364017624887	0.0183150183150183	0.0374331550802139	7	90	520	3527	0.971910183171664	1	1	0.527608771613157	0.240139497485543	Inf	0.561637589214909	1.55653846153846	0.497676919061715	0.855163156697595	1	1.69540021027199	0.507566889632107	0.982522040763797	1	1	0.473277769099589	0.0405594405594406	0.260434302539566	1	180	177	0
"TCGA-AF-2689-01A-01W-0831-10"	0	0	0	0	63	0	1	0	1	62	2542	4	8	3	15	646	2	7	1	10	641	3	2	17	22	610	3	3	9	15	645	0	1	1	2	95	0.0317460317460317	0.133333333333333	0.147286821705426	0.905263157894737	0.0210526315789474	1	1	2	4	97	0.0634920634920635	0.181818181818182	0.159016393442623	1.14339268978444	0.0412371134020619	0.0634920634920635	4	28	192	1063	0.742858943593363	1	1	0.791056608024652	0.251284713013187	Inf	0.817057291666667	1.08940972222222	0.631701070045371	0.957831436875846	1	1.10723120871303	0.754206730769231	0.782391245890608	1	1	0.722312315998172	0.545454545454546	1	1	59	58	0
"TCGA-AF-2691-01A-01W-0831-10"	0	0	0	0	72	0	0	0	0	72	2952	5	2	0	7	716	2	5	1	8	733	1	12	16	29	730	6	10	12	28	773	1	2	1	4	120	0.0555555555555556	0.142857142857143	0.155239327296248	0.920238095238095	0.0333333333333333	0	1	0	1	105	0.0138888888888889	0.0344827586206897	0.143835616438356	0.239737274220033	0.00952380952380952	0.0277777777777778	2	33	225	1278	0.974783575368433	1	1	0.344406008915689	0.0584485900576782	Inf	0.381714285714286	0.954285714285714	0.6793360676997	0.985766927516092	1	0.946691255705624	0.238571428571429	0.989061082999538	1	1	0.210494807104675	1	1	1	70	70	0
"TCGA-AF-2692-01A-01W-0831-10"	0	0	0	0	39	0	1	1	2	37	1517	2	4	0	6	352	0	2	0	2	381	1	1	12	14	405	1	2	12	15	379	1	0	0	1	51	0.0256410256410256	0.0666666666666667	0.134564643799472	0.495424836601307	0.0196078431372549	0	1	2	3	47	0.0769230769230769	0.214285714285714	0.116049382716049	1.84650455927052	0.0638297872340425	0.0769230769230769	3	23	98	686	0.649788517365541	1	1	0.913123603962913	0.228962991211589	Inf	0.923076923076923	4	0.236184178538435	0.600301453785189	1	6.96961280997499	0.666666666666667	0.820074959172692	1	1	0.636667426956065	1	1	1	36	34	0
"TCGA-AF-2693-01A-02D-1733-10"	0	0	0	0	252	1	0	3	3	248	10168	4	53	1	58	2508	6	56	1	63	2541	2	14	43	59	2625	1	12	55	68	2494	0	1	3	4	367	0.0158730158730159	0.0588235294117647	0.147153167602245	0.399743548645616	0.0108991825613079	0	6	4	10	384	0.0396825396825397	0.169491525423729	0.146285714285714	1.15863347457627	0.0260416666666667	0.0277777777777778	7	94	751	4368	0.994317960444746	1	1	0.433174487177696	0.197687903714416	Inf	0.472413020263411	0	1	1	1	0	0.486874643332699	0.992332504169383	1	1	0.447453461692189	0.00579710144927537	0.0785829307568439	0.707246376811595	245	241	0
"TCGA-AF-3400-01A-01W-0831-10"	0	0	0	0	29	1	0	0	0	28	1148	1	4	0	5	267	0	1	1	2	262	1	1	10	12	328	1	2	6	9	291	0	0	0	0	38	0	0	0.130584192439863	0	0	0	0	0	0	33	0	0	0.100609756097561	0	0	0	0	18	71	548	1	1	1	0	0	Inf	0	0	1	1	1	0	0	1	1	1	0	1	1	1	29	28	0
"TCGA-AF-3913-01A-02W-1073-09"	0	0	0	0	114	0	1	2	3	110	4510	3	3	4	10	1067	3	8	1	12	1155	10	13	16	39	1206	6	9	34	49	1082	4	2	3	9	160	0.0789473684210526	0.183673469387755	0.147874306839187	1.24209183673469	0.05625	4	0	3	7	165	0.0614035087719298	0.179487179487179	0.13681592039801	1.31188811188811	0.0424242424242424	0.12280701754386	14	52	325	1963	0.0823595980696246	1	1	1.62575476059343	0.916942857031148	Inf	1.49333333333333	3.52	0.000781971771616899	0.0238501390343154	0.0954005561372617	6.0323818857151	0.8448	0.731823719315564	1	1	0.823700596161857	0.722393472194293	1	1	100	96	0
"TCGA-AF-4110-01A-02D-1733-10"	0	0	0	0	134	1	5	1	6	127	5207	2	30	1	33	1283	2	17	1	20	1288	2	7	24	33	1261	5	9	27	41	1375	1	2	2	5	195	0.0373134328358209	0.121951219512195	0.141818181818182	0.859912445278299	0.0256410256410256	1	2	1	4	175	0.0298507462686567	0.121212121212121	0.13877874702617	0.873419913419913	0.0228571428571429	0.0373134328358209	5	53	370	2266	0.922739895345679	1	1	0.577865232983886	0.21810962137464	Inf	0.614165890027959	2.03552123552124	0.257587762371384	0.612948800612312	1	2.44869164634099	0.419077901430843	0.980107370662576	1	1	0.382866379212585	1	1	1	129	122	0
"TCGA-AF-5654-01A-01D-1657-10"	0	0	0	0	175	2	3	0	3	170	6970	4	21	1	26	1703	2	20	0	22	1658	3	8	41	52	1866	6	12	52	70	1743	1	2	3	6	210	0.0342857142857143	0.0857142857142857	0.120481927710843	0.711428571428571	0.0285714285714286	2	3	0	5	247	0.0285714285714286	0.0961538461538462	0.132368703108253	0.726409218312052	0.0202429149797571	0.0342857142857143	6	96	457	3152	0.991593353645053	1	1	0.431143247595515	0.182621712577339	Inf	0.464538550650019	2.63238512035011	0.0954677958442057	0.375711970741713	1	3.44663156508376	0.254746947130656	0.999609057162411	1	1	0.229958950740734	1	1	1	169	164	0
"TCGA-AF-6136-01A-11D-1826-10"	0	0	0	0	195	1	1	3	4	190	7790	0	33	1	34	1893	1	35	1	37	1987	4	6	54	64	1953	1	10	44	55	1957	0	0	3	3	296	0.0153846153846154	0.0545454545454545	0.151251916198263	0.360626535626536	0.0101351351351351	3	1	1	5	271	0.0256410256410256	0.078125	0.138760880696365	0.563018911439114	0.018450184501845	0.0358974358974359	7	96	567	3343	0.994646040006969	1	1	0.429977877718681	0.196108287521067	Inf	0.468656358623996	4.13756613756614	0.0244307622466114	0.208375039861594	1	8.83551971480781	0.281467084188173	0.999785503319856	1	1	0.250944231100451	1	1	1	188	183	0
"TCGA-AF-6655-01A-11D-1826-10"	0	0	0	0	140	0	0	7	7	133	5453	2	25	1	28	1318	2	23	0	25	1439	2	12	30	44	1329	1	12	23	36	1367	0	2	1	3	217	0.0214285714285714	0.0833333333333333	0.158741770299927	0.524961597542243	0.0138248847926267	1	2	1	4	186	0.0285714285714286	0.0909090909090909	0.139954853273138	0.649560117302053	0.021505376344086	0.0214285714285714	3	53	403	2293	0.99296421443289	1	1	0.322153966507965	0.0848803729293759	Inf	0.358383551931939	2.22994210090984	0.38531249968332	0.725809826855656	1	2.84339047792582	0.252446275574699	0.997963305666709	1	1	0.223202439824267	1	1	1	137	130	0
"TCGA-AF-6672-01A-11D-1826-10"	0	0	0	0	146	1	1	2	3	142	5822	3	23	1	27	1415	4	28	1	33	1505	3	10	22	35	1417	7	4	36	47	1485	4	1	2	7	223	0.0479452054794521	0.148936170212766	0.15016835016835	0.991794676080527	0.031390134529148	1	1	2	4	207	0.0273972602739726	0.114285714285714	0.146083274523642	0.782332643202208	0.0193236714975845	0.0616438356164384	9	59	430	2472	0.69399176727999	1	1	0.876988225611973	0.435212039549407	Inf	0.893228454172367	3.37441860465116	0.00957305475325146	0.127263032021188	1	5.74340527944726	0.465437048917402	0.978982832575531	1	1	0.425928993184406	1	1	1	137	133	0
"TCGA-AG-3574-01A-01W-0831-10"	0	0	0	0	41	0	1	0	1	40	1640	1	0	0	1	416	1	4	1	6	414	0	4	15	19	391	0	6	8	14	419	0	2	0	2	57	0.0487804878048781	0.142857142857143	0.136038186157518	1.05012531328321	0.0350877192982456	0	2	0	2	61	0.0487804878048781	0.105263157894737	0.156010230179028	0.674719585849871	0.0327868852459016	0	0	23	118	692	1	1	1	0	0	Inf	0	NA	1	1	1	0	0	1	1	1	0	1	1	1	41	40	0
"TCGA-AG-3575-01A-01W-0831-10"	0	0	0	0	51	0	0	1	1	50	2050	2	4	3	9	508	1	2	0	3	522	1	1	19	21	483	0	6	11	17	537	0	2	0	2	82	0.0392156862745098	0.117647058823529	0.152700186219739	0.770444763271162	0.024390243902439	0	1	0	1	62	0.0196078431372549	0.0476190476190476	0.128364389233954	0.370967741935484	0.0161290322580645	0	0	31	144	876	1	1	1	0	0	Inf	0	0	1	1	1	0	0	1	1	1	0	1	1	1	51	50	0
"TCGA-AG-3578-01A-01W-0831-10"	0	0	0	0	25	1	0	0	0	24	984	2	0	0	2	246	0	2	1	3	245	0	1	7	8	242	1	3	7	11	251	0	0	0	0	38	0	0	0.151394422310757	0	0	0	0	0	0	36	0	0	0.148760330578512	0	0	0	0	15	74	419	1	1	1	0	0	Inf	0	0	1	1	1	0	0	1	1	1	0	1	1	1	25	24	0
"TCGA-AG-3580-01A-01W-0831-10"	0	0	0	0	40	0	0	1	1	39	1599	0	2	0	2	417	0	1	0	1	376	0	4	19	23	406	0	2	11	13	400	0	1	0	1	62	0.025	0.0769230769230769	0.155	0.496277915632754	0.0161290322580645	0	2	2	4	66	0.1	0.173913043478261	0.16256157635468	1.06982872200264	0.0606060606060606	0.05	2	28	128	678	0.961520164501166	1	1	0.378663458912945	0.0635199228230906	Inf	0.419791666666667	NA	1	1	1	0	0.419791666666667	0.961520164501166	1	1	0.378663458912945	0.444444444444444	1	1	38	37	0
"TCGA-AG-3581-01A-01W-0831-10"	0	0	0	0	54	0	1	0	1	53	2173	1	2	0	3	542	1	1	1	3	522	4	2	14	20	551	3	1	23	27	558	0	0	3	3	65	0.0555555555555556	0.111111111111111	0.116487455197133	0.953846153846154	0.0461538461538462	0	0	0	0	84	0	0	0.152450090744102	0	0	0.0555555555555556	3	41	149	960	0.944680137134654	1	1	0.471674913973893	0.12233088153457	Inf	0.507474069554606	0	1	1	1	0	0.603482677308181	0.889032018883545	1	1	0.568727699693672	0.1	0.449606625258802	1	51	50	0
"TCGA-AG-3582-01A-01W-0831-10"	0	0	0	0	35	0	0	1	1	34	1394	0	4	1	5	302	0	2	1	3	341	1	5	10	16	379	1	4	5	10	372	0	0	0	0	48	0	0	0.129032258064516	0	0	0	1	0	1	37	0.0285714285714286	0.0625	0.0976253298153034	0.640202702702703	0.027027027027027	0	0	17	85	666	1	1	1	0	0	Inf	0	0	1	1	1	0	0	1	1	1	0	1	1	1	35	34	0
"TCGA-AG-3583-01A-01W-0831-10"	0	0	0	0	59	0	0	2	2	57	2337	0	1	0	1	601	0	1	2	3	563	1	1	15	17	565	1	2	33	36	608	1	1	1	3	85	0.0508474576271186	0.0833333333333333	0.139802631578947	0.596078431372549	0.0352941176470588	0	0	2	2	75	0.0338983050847458	0.117647058823529	0.132743362831858	0.886274509803922	0.0266666666666667	0.0677966101694915	4	46	160	1013	0.921450382319253	1	1	0.550765051570747	0.178766847320925	Inf	0.5865	3.665625	0.255368443945051	0.612948800612312	1	6.31467879708456	0.458203125	0.96631423603853	1	1	0.422302465956329	0.523809523809524	1	1	55	53	0
"TCGA-AG-3584-01A-01W-0831-10"	0	0	0	0	33	0	1	0	1	32	1312	0	2	1	3	316	0	0	1	1	347	1	3	7	11	307	0	2	15	17	342	0	0	0	0	57	0	0	0.166666666666667	0	0	0	0	0	0	48	0	0	0.156351791530945	0	0	0	0	23	105	544	1	1	1	0	0	Inf	0	0	1	1	1	0	0	1	1	1	0	1	1	1	33	32	0
"TCGA-AG-3586-01A-02W-0831-10"	0	0	0	0	66	2	1	0	1	63	2583	1	6	3	10	653	5	7	3	15	621	2	6	14	22	650	2	3	11	16	659	0	2	1	3	107	0.0454545454545455	0.1875	0.16236722306525	1.15478971962617	0.0280373831775701	0	2	1	3	101	0.0454545454545455	0.136363636363636	0.155384615384615	0.877587758775878	0.0297029702970297	0.0303030303030303	2	27	208	1101	0.956333194677374	1	1	0.392291051585903	0.0659830176529992	Inf	0.434018567639257	0	1	1	1	0	0.503461538461539	0.923590462534875	1	1	0.460493329250003	0.454545454545454	1	1	64	61	0
"TCGA-AG-3587-01A-01W-0831-10"	0	0	0	0	66	1	1	0	1	64	2624	1	4	3	8	667	0	4	0	4	629	0	6	16	22	644	2	4	24	30	684	1	0	0	1	95	0.0151515151515152	0.0333333333333333	0.138888888888889	0.24	0.0105263157894737	0	2	0	2	94	0.0303030303030303	0.0909090909090909	0.145962732919255	0.622823984526112	0.0212765957446809	0.0151515151515152	1	41	189	1139	0.998294509257684	1	1	0.147093438296597	0.00729645688180887	Inf	0.167296548248929	3.51322751322751	0.26539825862625	0.612948800612312	1	6.01323741558411	0	1	1	1	0	1	1	1	65	63	0
"TCGA-AG-3593-01A-01W-0831-10"	0	0	0	0	75	1	0	0	0	74	3034	5	4	0	9	780	4	7	1	12	808	7	3	19	29	742	3	6	15	24	704	1	1	0	2	132	0.0266666666666667	0.0833333333333333	0.1875	0.444444444444444	0.0151515151515152	1	2	1	4	107	0.0533333333333333	0.137931034482759	0.144204851752022	0.956493715758943	0.0373831775700935	0.04	3	41	239	1207	0.982699648172881	1	1	0.369701831549227	0.0962834793194978	Inf	0.412514263978699	1.21004184100418	0.512072914268421	0.867679104732602	1	1.26233371281309	0.177947329559439	0.997735149956762	1	1	0.153140190257088	1	1	1	72	71	0
"TCGA-AG-3594-01A-02W-0831-10"	0	0	0	0	42	0	0	2	2	40	1640	0	2	1	3	440	0	3	0	3	358	0	2	13	15	414	0	4	15	19	428	0	1	0	1	55	0.0238095238095238	0.0526315789473684	0.128504672897196	0.409569377990431	0.0181818181818182	0	0	0	0	65	0	0	0.157004830917874	0	0	0	0	28	120	722	1	1	1	0	0	Inf	0	NA	1	1	1	0	0	1	1	1	0	1	1	1	42	40	0
"TCGA-AG-3598-01A-01W-0833-10"	0	0	0	0	72	0	0	0	0	72	2952	3	4	5	12	709	1	1	0	2	677	2	6	14	22	771	4	6	26	36	795	1	1	0	2	111	0.0277777777777778	0.0555555555555556	0.139622641509434	0.397897897897898	0.018018018018018	1	1	0	2	92	0.0277777777777778	0.0909090909090909	0.119325551232166	0.761857707509881	0.0217391304347826	0.0277777777777778	2	44	203	1363	0.986189962852864	1	1	0.305341467140413	0.0522826323630782	Inf	0.335403726708075	2.57142857142857	0.178267032320271	0.517823284358882	1	3.35335730804571	0	1	1	1	0	0.428571428571429	1	1	70	70	0
"TCGA-AG-3599-01A-02W-0833-10"	0	0	0	0	67	0	1	0	1	66	2706	1	2	0	3	634	1	5	0	6	663	3	2	21	26	709	0	7	24	31	700	0	0	0	0	94	0	0	0.134285714285714	0	0	0	0	0	0	93	0	0	0.131170662905501	0	0	0	0	48	187	1222	1	1	1	0	0	Inf	0	0	1	1	1	0	0	1	1	1	0	1	1	1	67	66	0
"TCGA-AG-3600-01A-01W-0833-10"	0	0	0	0	95	0	2	1	3	92	3772	0	10	1	11	985	2	6	8	16	968	8	6	26	40	911	4	6	15	25	908	2	0	0	2	151	0.0210526315789474	0.08	0.166299559471366	0.481059602649007	0.0132450331125828	0	1	2	3	135	0.0315789473684211	0.075	0.148188803512623	0.506111111111111	0.0222222222222222	0.0421052631578947	4	49	286	1533	0.974637435920293	1	1	0.437705228077665	0.143177954078743	Inf	0.480010555482254	1.06002331002331	0.585176541892246	0.939362343563869	1	1.07200298278221	0.310250724884871	0.991894545185102	1	1	0.275000778078239	1	1	1	91	88	0
"TCGA-AG-3601-01A-01W-0833-10"	0	0	0	0	107	0	0	0	0	107	4387	1	10	9	20	1187	4	5	4	13	1073	6	9	20	35	1078	3	10	26	39	1049	0	2	6	8	151	0.0747663551401869	0.205128205128205	0.143946615824595	1.42502971642044	0.0529801324503311	2	2	1	5	155	0.0467289719626168	0.142857142857143	0.14378478664193	0.993548387096774	0.032258064516129	0.0841121495327103	9	46	306	1821	0.39770693644189	1	1	1.16420921784854	0.569642809741127	Inf	1.13743315508021	1.54466230936819	0.380461721883903	0.725809826855656	1	1.69976963411769	1.057757885763	0.501639333975813	1	1	1.06810760010109	0.0968421052631578	0.449606625258802	1	98	98	0
"TCGA-AG-3602-01A-02W-0833-10"	0	0	0	0	47	0	0	0	0	47	1927	0	2	0	2	435	1	1	2	4	453	0	2	13	15	538	4	2	20	26	501	2	0	1	3	65	0.0638297872340425	0.115384615384615	0.129740518962076	0.889349112426036	0.0461538461538462	0	1	1	2	55	0.0425531914893617	0.133333333333333	0.102230483271375	1.30424242424242	0.0363636363636364	0.0851063829787234	4	33	120	919	0.634328559473082	1	1	0.928333933677251	0.295946229556391	Inf	0.936036036036036	4.32916666666667	0.0695089645240409	0.312771510182919	1	7.63081579814389	0.524747474747475	0.906327691656403	1	1	0.494338177872082	1	1	1	43	43	0
"TCGA-AG-3605-01A-01W-0833-10"	0	0	0	0	60	0	0	0	0	60	2460	1	3	0	4	623	1	2	3	6	604	2	6	14	22	615	2	4	22	28	618	1	1	2	4	86	0.0666666666666667	0.142857142857143	0.13915857605178	1.0265780730897	0.0465116279069767	1	3	0	4	79	0.0666666666666667	0.181818181818182	0.128455284552846	1.41542002301496	0.0506329113924051	0.0666666666666667	4	36	165	1068	0.800300694072482	1	1	0.719358839173359	0.23123605119834	Inf	0.747272727272727	3.73636363636364	0.0903759653304243	0.367528925677059	1	6.45628235345358	0.415151515151515	0.96177195405825	1	1	0.38095329791661	1	1	1	56	56	0
"TCGA-AG-3608-01A-01W-0833-10"	0	0	0	0	57	0	0	0	0	57	2337	0	2	0	2	603	0	4	0	4	519	1	4	21	26	595	2	5	18	25	620	0	0	0	0	71	0	0	0.114516129032258	0	0	1	1	0	2	81	0.0350877192982456	0.0769230769230769	0.136134453781513	0.565052231718899	0.0246913580246914	0.0175438596491228	1	41	152	1063	0.99610599631091	1	1	0.17070013831812	0.00852160014611592	Inf	0.19031954887218	2.66447368421053	0.331728317230046	0.674514245034427	1	3.49102654455274	0	1	1	1	0	1	1	1	56	56	0
"TCGA-AG-3609-01A-02W-0833-10"	0	0	0	0	90	1	0	0	0	89	3649	6	6	3	15	907	5	2	1	8	923	4	4	19	27	850	7	8	24	39	969	2	0	5	7	138	0.0777777777777778	0.179487179487179	0.142414860681115	1.2603121516165	0.0507246376811594	1	1	3	5	123	0.0555555555555556	0.185185185185185	0.144705882352941	1.27973501957242	0.040650406504065	0.122222222222222	11	43	261	1558	0.148846187564772	1	1	1.52664282668675	0.794005127752445	Inf	1.41968213424152	1.90073145245559	0.203525136636463	0.564319697037466	1	2.23722641967459	1.29662300632629	0.274669159675628	1	1	1.36416795898325	0.0995327192661963	0.449606625258802	1	79	78	0
"TCGA-AG-3611-01A-01W-0833-10"	0	0	0	0	51	0	0	0	0	51	2091	0	2	3	5	495	1	5	0	6	536	1	3	15	19	548	1	0	20	21	512	0	0	1	1	70	0.0196078431372549	0.0476190476190476	0.13671875	0.348299319727891	0.0142857142857143	0	0	0	0	71	0	0	0.12956204379562	0	0	0.0196078431372549	1	36	141	919	0.994600981207592	1	1	0.181203670599672	0.00900962010943809	Inf	0.203181905309565	0	1	1	1	0	0.214792299898683	0.992875075370347	1	1	0.191860296300339	1	1	1	50	50	0
"TCGA-AG-3612-01A-01W-0833-10"	0	0	0	0	70	0	0	0	0	70	2870	3	1	3	7	715	5	4	2	11	698	2	6	9	17	691	2	8	25	35	766	2	2	2	6	115	0.0857142857142857	0.171428571428571	0.150130548302872	1.14186335403727	0.0521739130434783	1	0	2	3	96	0.0428571428571429	0.176470588235294	0.138929088277858	1.27022058823529	0.03125	0.1	7	31	211	1246	0.312825090464445	1	1	1.33315144081974	0.575576317092341	Inf	1.27201297081566	5.17890995260664	0.0110721807668157	0.127263032021188	1	17.6565285466814	0.812378031781433	0.745682666763291	1	1	0.787478629666264	1	1	1	63	63	0
"TCGA-AG-3726-01A-02W-0899-10"	0	0	0	0	132	0	0	3	3	109	4469	4	5	2	11	1040	3	4	2	9	1025	5	9	31	45	1184	4	8	32	44	1220	1	3	0	4	137	0.0303030303030303	0.0909090909090909	0.112295081967213	0.809555408095554	0.0291970802919708	0	2	1	3	151	0.0227272727272727	0.0666666666666667	0.127533783783784	0.522737306843267	0.0198675496688742	0.0151515151515152	2	70	288	2116	0.998796732180341	1	1	0.209996134250832	0.0364525753915252	Inf	0.231867283950617	0.927469135802469	0.68341459128014	0.985766927516092	1	0.918423741415871	0.132495590828924	0.999649626824378	1	1	0.118551964757696	1	1	1	130	107	0
"TCGA-AG-3727-01A-01W-0899-10"	0	0	0	0	81	0	3	0	3	78	3198	0	2	2	4	797	4	2	4	10	729	0	5	20	25	844	1	4	34	39	828	1	2	1	4	122	0.0493827160493827	0.102564102564103	0.147342995169082	0.69609079445145	0.0327868852459016	0	0	2	2	112	0.0246913580246914	0.08	0.132701421800948	0.602857142857143	0.0178571428571429	0.0493827160493827	4	51	234	1438	0.957909295274051	1	1	0.482144993627464	0.157717694141611	Inf	0.51965811965812	7.14529914529915	0.140466228332337	0.46315891504176	1	Inf	0.39696106362773	0.985377793454174	1	1	0.361636315979205	0.545454545454546	1	1	77	74	0
"TCGA-AG-3731-01A-11D-1733-10"	0	0	0	0	211	0	1	8	9	202	8282	5	40	1	46	1944	1	29	1	31	2197	5	7	52	64	2060	9	7	45	61	2081	7	2	2	11	317	0.0521327014218009	0.180327868852459	0.152330610283518	1.1837927289652	0.0347003154574132	5	0	0	5	299	0.023696682464455	0.078125	0.145145631067961	0.538252508361204	0.0167224080267559	0.0663507109004739	14	97	616	3525	0.784257319643656	1	1	0.825949036830192	0.480574143344095	Inf	0.847870597870598	5.76205936920223	8.8005321593423e-09	1.07366492343976e-06	1.07366492343976e-06	34.2653481708913	0.138606239121703	0.999996589411097	1	1	0.120500918893341	0.000965052278614514	0.0196227296651618	0.117736377990971	197	188	0
"TCGA-AG-3732-01A-11D-1657-10"	0	0	0	0	168	2	4	11	15	151	6191	5	34	1	40	1474	0	39	0	39	1623	2	6	31	39	1572	2	3	28	33	1522	0	2	3	5	221	0.0297619047619048	0.151515151515152	0.145203679369251	1.04346633758398	0.0226244343891403	0	0	2	2	207	0.0119047619047619	0.0512820512820513	0.131679389312977	0.389446302489781	0.00966183574879227	0.0297619047619048	5	58	428	2666	0.946497107853878	1	1	0.53706692114953	0.203512575915346	Inf	0.573727933541018	0	1	1	1	0	0.612624742594646	0.92366661802561	1	1	0.576841017804143	0.020979020979021	0.159965034965035	1	163	146	0
"TCGA-AG-3742-01A-11D-1657-10"	0	0	0	0	221	0	7	3	10	209	8569	3	29	1	33	1977	2	38	2	42	2156	3	9	53	65	2226	4	9	56	69	2210	2	3	4	9	313	0.0407239819004525	0.130434782608696	0.141628959276018	0.920961244617308	0.0287539936102236	0	3	2	5	303	0.0226244343891403	0.0769230769230769	0.136118598382749	0.565118050266565	0.0165016501650165	0.0361990950226244	8	108	616	3820	0.993479784833926	1	1	0.459417375437627	0.222462562259943	Inf	0.496641289744738	2.05751391465677	0.253043500242957	0.612948800612312	1	2.47982598541909	0.39640176337424	0.99840788515762	1	1	0.361296085989441	0.208695652173913	0.651958540853412	1	213	201	0
"TCGA-AG-3878-01A-02W-0899-10"	0	0	0	0	80	0	2	1	3	76	3116	2	2	1	5	793	1	3	3	7	766	0	6	20	26	745	2	7	29	38	812	1	1	0	2	113	0.025	0.0526315789473684	0.139162561576355	0.378202142524453	0.0176991150442478	0	1	0	1	119	0.0125	0.0384615384615385	0.159731543624161	0.240788623141564	0.00840336134453781	0.0125	1	50	232	1325	0.999702740037482	1	1	0.114298585363166	0.00569394316655243	Inf	0.131592292089249	3.35560344827586	0.276654417062384	0.612948800612312	1	5.7011441849014	0	1	1	1	0	1	1	1	79	75	0
"TCGA-AG-3881-01A-01W-0899-10"	0	0	0	0	96	0	0	2	2	93	3813	3	4	2	9	915	4	5	2	11	859	2	8	30	40	1035	4	5	24	33	1004	2	1	3	6	125	0.0625	0.181818181818182	0.124501992031873	1.46036363636364	0.048	0	2	0	2	120	0.0208333333333333	0.05	0.115942028985507	0.43125	0.0166666666666667	0.0520833333333333	5	55	245	1794	0.860388430233658	1	1	0.665789278396022	0.250902374460443	Inf	0.693537414965986	2.77414965986395	0.157110172666406	0.491472847828244	1	3.6576775613614	0.462358276643991	0.964112215827251	1	1	0.430858835512604	1	1	1	91	88	0
"TCGA-AG-3882-01A-01W-0899-10"	0	0	0	0	61	0	2	0	2	58	2378	0	3	0	3	608	2	1	1	4	534	1	5	23	29	604	1	5	16	22	632	0	1	2	3	79	0.0491803278688525	0.136363636363636	0.125	1.09090909090909	0.0379746835443038	0	0	2	2	84	0.0327868852459016	0.0689655172413793	0.139072847682119	0.495894909688013	0.0238095238095238	0.0655737704918033	4	37	163	1073	0.806321391262339	1	1	0.711825653836267	0.229075844562653	Inf	0.739787520574592	0	1	1	1	0	0.77772534214252	0.773839251435452	1	1	0.752475156564089	0.0476190476190476	0.276643990929705	1	57	54	0
"TCGA-AG-3883-01A-02W-0899-10"	0	0	0	0	125	0	0	3	3	122	5002	3	3	2	8	1178	2	4	2	8	1241	1	15	37	53	1341	4	7	42	53	1242	3	0	1	4	168	0.032	0.0754716981132075	0.135265700483092	0.557951482479784	0.0238095238095238	0	8	1	9	178	0.072	0.169811320754717	0.132736763609247	1.27930888276447	0.050561797752809	0.04	5	79	346	2237	0.990582326038399	1	1	0.409295898162432	0.156299592338998	Inf	0.444364161849711	4.47919075144509	0.0197152577133511	0.185020110848372	1	9.68237970611207	0.188995390356333	0.999826326901871	1	1	0.16799072207806	1	1	1	120	117	0
"TCGA-AG-3885-01A-01W-0899-10"	0	0	0	0	184	2	2	5	7	174	7134	1	31	2	34	1654	4	39	6	49	1648	3	5	38	46	1870	3	6	36	45	1962	0	1	5	6	234	0.0326086956521739	0.133333333333333	0.119266055045872	1.11794871794872	0.0256410256410256	0	2	1	3	235	0.016304347826087	0.0652173913043478	0.125668449197861	0.518963922294172	0.0127659574468085	0.0326086956521739	6	74	469	3363	0.935841637238321	1	1	0.581464995181953	0.244742602854985	Inf	0.612793176972281	0	1	1	1	0	0.662479110240304	0.901646714554492	1	1	0.632761250750744	0.0090497737556561	0.0920060331825037	1	178	168	0
"TCGA-AG-3887-01A-01W-1073-09"	0	0	0	0	76	0	2	2	4	72	2952	2	4	1	7	709	3	5	0	8	703	2	5	26	33	722	2	7	15	24	818	1	0	1	2	113	0.0263157894736842	0.0833333333333333	0.138141809290954	0.603244837758112	0.0176991150442478	1	1	1	3	91	0.0394736842105263	0.0909090909090909	0.126038781163435	0.721278721278721	0.032967032967033	0.0526315789473684	4	41	204	1336	0.862481973734597	1	1	0.639084200046394	0.207079308111785	Inf	0.671023965141612	3.77450980392157	0.0885215887369903	0.367528925677059	1	6.53551110699707	0.368244858919177	0.977882975604599	1	1	0.336003536109525	1	1	1	72	68	0
"TCGA-AG-3890-01A-01W-1073-09"	0	0	0	0	77	0	1	1	2	74	3034	1	4	5	10	785	4	4	2	10	807	3	9	19	31	683	7	4	12	23	759	4	0	1	5	125	0.0649350649350649	0.217391304347826	0.164690382081686	1.32	0.04	3	2	2	7	100	0.0909090909090909	0.225806451612903	0.146412884333821	1.54225806451613	0.07	0.12987012987013	10	31	225	1217	0.100425880024363	1	1	1.74402368743155	0.85958266399154	Inf	1.56314363143631	4.48622222222222	0.000190548021900623	0.00774895289062533	0.023246858671876	12.5846913052327	0.620215053763441	0.881365965798569	1	1	0.579705042991907	0.213756898640463	0.651958540853412	1	67	64	0
"TCGA-AG-3892-01A-01W-1073-09"	0	0	0	0	2177	0	4	1	5	2170	88970	4	86	167	257	25094	9	93	183	285	24962	3	401	436	840	19440	2	375	411	788	19474	1	329	37	367	3617	0.168580615525953	0.465736040609137	0.185734825921742	2.50753211358096	0.101465302737075	1	344	34	379	3639	0.174092788240698	0.451190476190476	0.187191358024691	2.41031680602991	0.104149491618577	0.0335323840146991	73	779	7256	31658	1	1	1	0.408858018956454	0.330057561931899	Inf	0.459506718739486	2.145203969129	0.235302409109841	0.600301453785189	1	2.90850000882372	0.44955573142904	1	1	1	0.39919406125518	1.09380633530124e-19	6.67221864533756e-18	1.33444372906751e-17	2104	2097	0
"TCGA-AG-3893-01A-01W-1073-09"	0	0	0	0	115	0	0	1	1	113	4633	4	4	4	12	1101	1	5	2	8	1096	5	8	32	45	1203	5	13	30	48	1233	2	5	3	10	163	0.0869565217391304	0.208333333333333	0.132197891321979	1.57592024539877	0.0613496932515337	1	1	0	2	171	0.0173913043478261	0.0444444444444444	0.14214463840399	0.312670565302144	0.0116959064327485	0.0521739130434783	6	66	334	2102	0.939869994592088	1	1	0.572235177669662	0.239518447999442	Inf	0.607784431137725	2.18802395209581	0.148730059187073	0.477501768969024	1	2.6957391215535	0.352907089047711	0.993392438207107	1	1	0.320100848947872	1	1	1	109	107	0
"TCGA-AG-3894-01A-01W-1073-09"	0	0	0	0	104	0	2	2	4	99	4059	4	2	5	11	938	3	3	2	8	959	3	8	27	38	1073	8	3	31	42	1089	0	1	0	1	133	0.00961538461538462	0.0238095238095238	0.122130394857668	0.194951664876477	0.0075187969924812	0	2	0	2	131	0.0192307692307692	0.0526315789473684	0.122087604846226	0.431096826034552	0.0152671755725191	0	0	69	264	1898	1	1	1	0	0	Inf	0	0	1	1	1	0	0	1	1	1	0	1	1	1	104	99	0
"TCGA-AG-3896-01A-01W-1073-09"	0	0	0	0	106	0	1	0	1	105	4305	5	5	3	13	1046	1	4	1	6	992	3	7	36	46	1138	3	2	35	40	1129	1	1	1	3	150	0.0283018867924528	0.075	0.132860938883968	0.5645	0.02	0	3	2	5	157	0.0471698113207547	0.108695652173913	0.137961335676626	0.787870396012185	0.0318471337579618	0.0377358490566038	4	73	307	1960	0.994611801433108	1	1	0.349935553004531	0.115846098950399	Inf	0.383603367316722	1.23072747014115	0.583007056697137	0.939362343563869	1	1.27672179077969	0.312015414965362	0.997413431830779	1	1	0.281760386416265	0.569230769230769	1	1	102	101	0
"TCGA-AG-3898-01A-01W-1073-09"	0	0	0	0	110	0	1	0	1	108	4428	5	4	3	12	1117	3	3	2	8	1095	1	7	34	42	1115	3	6	37	46	1101	1	0	2	3	143	0.0272727272727273	0.0652173913043478	0.129881925522253	0.502128306476132	0.020979020979021	0	2	0	2	148	0.0181818181818182	0.0476190476190476	0.132735426008969	0.358751608751609	0.0135135135135135	0.0272727272727273	3	72	291	1925	0.997841788687788	1	1	0.275727960161342	0.0730856919143932	Inf	0.304604810996564	1.90378006872852	0.431358896066753	0.785459482390207	1	2.20401032433388	0.21451043027927	0.999405685927443	1	1	0.191820109372351	1	1	1	107	105	0
"TCGA-AG-3901-01A-01W-1073-09"	0	0	0	0	66	0	0	0	0	66	2706	0	2	0	2	629	2	4	2	8	684	2	4	18	24	740	1	2	29	32	653	0	0	0	0	81	0	0	0.124042879019908	0	0	1	1	0	2	85	0.0303030303030303	0.0833333333333333	0.114864864864865	0.725490196078431	0.0235294117647059	0.0151515151515152	1	49	166	1227	0.998095610752257	1	1	0.150949872309468	0.00757284256879525	Inf	0.167831325301205	2.79718875502008	0.317861734203103	0.668605716772044	1	3.69040186955357	0	1	1	1	0	1	1	1	65	65	0
"TCGA-AG-3902-01A-01W-1073-09"	0	0	0	0	135	0	0	0	0	134	5494	9	10	7	26	1430	6	6	9	21	1405	7	9	32	48	1321	8	5	26	39	1338	2	2	3	7	207	0.0518518518518519	0.179487179487179	0.154708520179372	1.16016350798959	0.0338164251207729	3	2	2	7	190	0.0518518518518519	0.145833333333333	0.143830431491294	1.01392543859649	0.0368421052631579	0.0740740740740741	10	63	397	2262	0.665574083173541	1	1	0.90446081351694	0.466681190490759	Inf	0.917497670887823	2.23257766582704	0.061676061620389	0.300979180707498	1	2.84732966602793	0.577390775644923	0.945503596958035	1	1	0.537623713907087	1	1	1	125	124	0
"TCGA-AG-3909-01A-01W-1073-09"	0	0	0	0	82	0	0	0	0	82	3362	1	4	0	5	738	1	5	1	7	836	1	10	23	34	850	3	3	30	36	938	0	0	1	1	116	0.0121951219512195	0.0277777777777778	0.123667377398721	0.224616858237548	0.00862068965517241	1	0	0	1	89	0.0121951219512195	0.0294117647058824	0.104705882352941	0.280898876404494	0.0112359550561798	0.024390243902439	2	55	205	1583	0.991432612403225	1	1	0.280919762524089	0.0483808741110761	Inf	0.306033376123235	2.18048780487805	0.386701956931292	0.725809826855656	1	2.57207256397546	0.164565117349287	0.998314276983332	1	1	0.14857698160351	1	1	1	80	80	0
"TCGA-AG-3999-01A-01W-1073-09"	0	0	0	0	97	0	1	0	1	94	3854	1	2	5	8	867	1	2	3	6	896	1	4	32	37	1003	3	4	36	43	1088	1	0	0	1	125	0.0103092783505155	0.0232558139534884	0.114889705882353	0.202418604651163	0.008	1	1	2	4	116	0.0412371134020619	0.108108108108108	0.115653040877368	0.934762348555452	0.0344827586206897	0.0412371134020619	4	68	241	1850	0.971256779825854	1	1	0.451673146917497	0.149068319499254	Inf	0.482019363762102	4.33817427385892	0.0686120765748946	0.312771510182919	1	7.66247955838648	0.255186721991701	0.997420588776692	1	1	0.232709273498493	1	1	1	93	90	0
"TCGA-AG-4001-01A-02W-1073-09"	0	0	0	0	124	0	1	2	3	120	4920	2	6	1	9	1134	2	3	1	6	1237	4	7	47	58	1238	4	4	39	47	1311	1	1	3	5	164	0.0403225806451613	0.106382978723404	0.12509534706331	0.850415153087701	0.0304878048780488	1	2	1	4	168	0.032258064516129	0.0689655172413793	0.135702746365105	0.508210180623974	0.0238095238095238	0.0483870967741935	6	88	332	2217	0.986575668251517	1	1	0.455399346173571	0.192095701750374	Inf	0.490066649577032	1.91942771084337	0.281353547822045	0.612948800612312	1	2.22498651323768	0.357102829924349	0.997047419557552	1	1	0.325834447082321	0.619909502262444	1	1	118	114	0
"TCGA-AG-4005-01A-01W-1073-09"	0	0	0	0	120	0	1	3	4	115	4715	4	7	2	13	1141	5	6	2	13	1090	3	8	38	49	1194	4	6	30	40	1290	2	1	1	4	153	0.0333333333333333	0.1	0.118604651162791	0.843137254901961	0.0261437908496732	1	3	0	4	175	0.0333333333333333	0.0816326530612245	0.146566164154104	0.556967930029155	0.0228571428571429	0.0333333333333333	4	71	328	2156	0.991839768290747	1	1	0.370419471020604	0.122597939040604	Inf	0.40390243902439	3.24564459930314	0.0539739029651821	0.300879517831208	1	4.92492196787854	0.111370157819225	0.999926630797137	1	1	0.0981473102596725	0.569230769230769	1	1	116	111	0
"TCGA-AG-4007-01A-01W-1073-09"	0	0	0	0	165	0	4	0	4	161	6601	4	5	4	13	1467	4	8	5	17	1690	3	9	48	60	1754	3	12	56	71	1690	3	5	3	11	215	0.0666666666666667	0.154929577464789	0.127218934911243	1.21781853914183	0.0511627906976744	1	2	3	6	214	0.0363636363636364	0.1	0.122006841505131	0.819626168224299	0.0280373831775701	0.0606060606060606	10	100	429	3015	0.88941835043204	1	1	0.702859445545757	0.36848779928913	Inf	0.729815638906548	5.35198135198135	0.00298246158698461	0.0606433856020204	0.363860313612122	14.0358061386259	0.463152232383002	0.991730003757259	1	1	0.430358341580735	0.707985303535915	1	1	155	151	0
"TCGA-AG-4008-01A-01W-1073-09"	0	0	0	0	77	0	1	1	2	74	3034	0	3	2	5	739	3	6	2	11	683	0	3	19	22	814	1	8	27	36	798	1	1	1	3	94	0.038961038961039	0.0833333333333333	0.117794486215539	0.707446808510638	0.0319148936170213	0	1	0	1	109	0.012987012987013	0.0454545454545455	0.133906633906634	0.339449541284404	0.00917431192660551	0.025974025974026	2	45	203	1409	0.985495035116152	1	1	0.308626764252734	0.0528708002688778	Inf	0.337910072319463	7.94088669950739	0.126472411655301	0.447415426946292	1	Inf	0.172627971728422	0.997820905846029	1	1	0.154331949988348	1	1	1	75	72	0
"TCGA-AG-4015-01A-01W-1073-09"	0	0	0	0	97	0	0	1	1	95	3895	4	4	1	9	961	2	6	4	12	956	0	10	26	36	1012	2	5	31	38	966	0	1	4	5	129	0.0515463917525773	0.131578947368421	0.133540372670807	0.98531211750306	0.0387596899224806	0	3	2	5	141	0.0515463917525773	0.138888888888889	0.139328063241107	0.996847911741529	0.0354609929078014	0.0618556701030928	6	53	270	1708	0.831831786767575	1	1	0.716248022952755	0.297012221202784	Inf	0.745009416195857	0	1	1	1	0	0.771150097465887	0.80655676136357	1	1	0.744324809301847	0.0108359133126935	0.101690878780662	1	91	89	0
"TCGA-AG-A002-01A-01W-A00K-09"	0	0	0	0	12312	1	25	17	42	12255	502455	47	351	439	837	135838	53	315	474	842	137352	9	2538	2746	5293	114292	16	2518	2749	5283	114973	0	2013	204	2217	20328	0.180068226120858	0.419647927314026	0.176806728536265	2.37348392104858	0.109061393152302	0	2038	202	2240	20300	0.181936322287199	0.423200453429057	0.177615231162286	2.38268109474452	0.110344827586207	0.0329759584145549	406	5114	40628	188637	1	1	1	0.368606982833841	0.337793995240377	Inf	0.415048904303878	0	1	1	1	0	0.41693720687123	1	1	1	0.370417763853851	7.67023552891641e-127	9.35768734527802e-125	9.35768734527802e-125	11906	11849	0
"TCGA-AG-A008-01A-01W-A005-10"	0	0	0	0	49	0	0	0	0	49	2009	1	1	0	2	500	1	3	2	6	477	3	1	17	21	514	0	3	17	20	518	0	0	1	1	72	0.0204081632653061	0.05	0.138996138996139	0.359722222222222	0.0138888888888889	2	1	2	5	79	0.102040816326531	0.238095238095238	0.153696498054475	1.54912597950573	0.0632911392405063	0.102040816326531	5	32	151	881	0.648200594436247	1	1	0.911737753034835	0.333408948996669	Inf	0.923572579201718	4.55629139072848	0.058839134399482	0.300879517831208	1	11.6222008959629	0.603038566419945	0.890952607433482	1	1	0.564874917593252	1	1	1	44	44	0
"TCGA-AG-A00C-01A-01W-A005-10"	0	0	0	0	69	0	0	0	0	69	2829	1	1	1	3	688	1	4	3	8	724	4	10	21	35	705	3	8	12	23	712	0	2	0	2	95	0.0289855072463768	0.0869565217391304	0.133426966292135	0.651716247139588	0.0210526315789474	1	3	0	4	95	0.0579710144927536	0.114285714285714	0.134751773049645	0.84812030075188	0.0421052631578947	0.0144927536231884	1	39	190	1227	0.996664258744523	1	1	0.165696100024196	0.0082743315525203	Inf	0.186447368421053	1.06541353383459	0.63593726546675	0.957831436875846	1	1.07628093890234	0	1	1	1	0	1	1	1	68	68	0
"TCGA-AG-A00H-01A-01W-A00E-09"	0	0	0	0	75	0	0	0	0	74	3034	3	4	1	8	762	1	3	0	4	773	3	4	23	30	737	5	7	20	32	762	2	2	0	4	115	0.0533333333333333	0.125	0.150918635170604	0.828260869565217	0.0347826086956522	2	1	2	5	127	0.0666666666666667	0.166666666666667	0.172320217096336	0.967191601049869	0.0393700787401575	0.08	6	45	242	1257	0.850527610233941	1	1	0.692710245025032	0.284924693817179	Inf	0.728731161886242	3.09710743801653	0.0281931594133101	0.208375039861594	1	5.18576576299563	0.28810301748991	0.994925813579375	1	1	0.253517575343961	0.619909502262444	1	1	69	68	0
"TCGA-AG-A00Y-01A-02W-A005-10"	0	0	0	0	145	4	20	13	33	108	4428	4	11	2	17	1088	3	13	4	20	1060	4	6	27	37	1102	4	8	22	34	1178	0	2	3	5	162	0.0344827586206897	0.147058823529412	0.137521222410866	1.06935366739288	0.0308641975308642	1	1	8	10	161	0.0689655172413793	0.27027027027027	0.146098003629764	1.84992445862011	0.062111801242236	0.0827586206896552	12	45	323	1957	0.104869680617433	1	1	1.61529174778211	0.866350311664679	Inf	1.48606811145511	0.882352941176471	0.705825618772142	1	1	0.86561690764422	1.58463385354142	0.0816376874633311	1	1	1.75335869327173	0.000483968542044767	0.0118088324258923	0.0590441621294616	133	96	0
"TCGA-AG-A011-01A-01W-A00K-09"	0	0	0	0	111	0	0	0	0	111	4551	4	3	1	8	1071	9	5	3	17	1138	3	10	30	43	1174	3	12	28	43	1168	1	3	3	7	161	0.0630630630630631	0.162790697674419	0.137842465753425	1.18099089989889	0.0434782608695652	3	1	2	6	148	0.0540540540540541	0.13953488372093	0.126064735945486	1.1068510370836	0.0405405405405405	0.0810810810810811	9	55	309	2033	0.476301635173483	1	1	1.07659772275798	0.531368212099049	Inf	1.06583737864078	5.05285868392664	0.00372960476782158	0.065001683096319	0.455011781674233	13.1325706474566	0.653386898783618	0.894119396728624	1	1	0.620792848527303	1	1	1	102	102	0
"TCGA-AG-A014-01A-02W-A00K-09"	0	0	0	0	120	2	5	1	6	100	4100	1	8	1	10	990	1	6	2	9	1035	5	10	29	44	1021	7	5	25	37	1054	0	1	3	4	142	0.0333333333333333	0.108108108108108	0.134724857685009	0.802436239055957	0.028169014084507	1	3	3	7	140	0.0583333333333333	0.159090909090909	0.137120470127326	1.16022727272727	0.05	0.0583333333333333	7	59	282	1793	0.808588633749433	1	1	0.754448293886224	0.337549261	Inf	0.780410487857296	0.613179669030733	0.826856620434388	1	1	0.578139454353181	0.817572892040977	0.759383872639884	1	1	0.794849055758165	0.0634674922600621	0.336653654596851	1	113	93	0
"TCGA-AG-A015-01A-01W-A005-10"	0	0	0	0	64	0	0	0	0	64	2624	2	3	2	7	709	2	3	4	9	665	2	5	17	24	615	2	10	12	24	635	1	2	0	3	95	0.046875	0.125	0.149606299212598	0.835526315789474	0.0315789473684211	1	2	1	4	109	0.0625	0.166666666666667	0.177235772357724	0.940366972477064	0.036697247706422	0.046875	3	30	204	1046	0.92179396382206	1	1	0.512963438483561	0.131653834559686	Inf	0.557040998217469	3.06372549019608	0.128356884779674	0.447415426946292	1	5.11753931610744	0.211291413116971	0.994068999096758	1	1	0.183260250863381	1	1	1	61	61	0
"TCGA-AG-A016-01A-01W-A005-10"	0	0	0	0	57	0	0	0	0	57	2337	1	2	1	4	577	1	1	1	3	551	1	1	20	22	619	1	4	23	28	590	0	1	2	3	90	0.0526315789473684	0.107142857142857	0.152542372881356	0.702380952380952	0.0333333333333333	1	0	0	1	90	0.0175438596491228	0.0454545454545455	0.145395799676898	0.312626262626263	0.0111111111111111	0.0526315789473684	3	42	180	1029	0.971041905125348	1	1	0.40854585018853	0.10624817902621	Inf	0.447777777777778	3.35833333333333	0.27669230401758	0.612948800612312	1	5.70367805685392	0.312403100775194	0.991148065195521	1	1	0.279044878516805	1	1	1	54	54	0
"TCGA-AG-A01L-01A-01W-A00K-09"	0	0	0	0	74	0	1	0	1	72	2952	1	0	0	1	606	2	4	1	7	694	0	2	24	26	841	1	3	34	38	811	0	1	3	4	103	0.0540540540540541	0.105263157894737	0.127003699136868	0.828819621870209	0.0388349514563107	0	0	2	2	95	0.027027027027027	0.0769230769230769	0.112960760998811	0.680971659919028	0.0210526315789474	0.0675675675675676	5	54	198	1454	0.848587100037101	1	1	0.680081907330402	0.255589806251885	Inf	0.707070707070707	0	1	1	1	0	0.719261581330547	0.838069822912248	1	1	0.69290790092979	0.0151515151515152	0.123232323232324	1	69	67	0
"TCGA-AG-A01W-01A-21W-A096-10"	0	0	0	0	127	0	0	2	2	125	5125	1	4	6	11	1218	3	7	6	16	1281	5	9	31	45	1304	3	11	39	53	1322	1	1	3	5	173	0.0393700787401575	0.0943396226415094	0.130862329803328	0.72090740538772	0.0289017341040462	1	0	3	4	167	0.031496062992126	0.0888888888888889	0.128067484662577	0.694078509647372	0.0239520958083832	0.062992125984252	8	70	340	2286	0.805607505023731	1	1	0.768472061931825	0.366379549967294	Inf	0.792156862745098	1.93088235294118	0.278885084408864	0.612948800612312	1	2.24026917997276	0.662016806722689	0.902449278095902	1	1	0.630423534515386	0.153434800493624	0.550560166477121	1	119	117	0
"TCGA-AG-A01Y-01A-41W-A096-10"	0	0	0	0	92	0	1	2	3	89	3649	1	10	5	16	945	4	7	2	13	902	3	6	22	31	945	4	2	23	29	857	1	0	1	2	133	0.0217391304347826	0.0689655172413793	0.155192532088681	0.44438682914182	0.0150375939849624	0	1	2	3	142	0.0326086956521739	0.0967741935483871	0.15026455026455	0.644025442980463	0.0211267605633803	0.0434782608695652	4	48	275	1527	0.965613787618864	1	1	0.462878884360327	0.151269117749728	Inf	0.504055944055944	0.936103896103896	0.686804826548097	0.985766927516092	1	0.925475032516152	0.436848484848485	0.975288225159921	1	1	0.396765748402455	0.523809523809524	1	1	88	85	0
"TCGA-AG-A020-01A-21W-A096-10"	0	0	0	0	79	0	1	3	4	74	3034	1	5	3	9	743	2	2	3	7	699	1	6	19	26	767	2	6	24	32	825	0	0	0	0	101	0	0	0.122424242424242	0	0	0	3	2	5	110	0.0632911392405063	0.192307692307692	0.143415906127771	1.34090909090909	0.0454545454545455	0.0253164556962025	2	44	211	1381	0.987875152614071	1	1	0.297643767878914	0.0509883881066637	Inf	0.328044508551411	0	1	1	1	0	0.350931334729417	0.982632884100271	1	1	0.31941729858729	0.444444444444444	1	1	77	72	0
"TCGA-AG-A025-01A-01W-A00E-09"	0	0	0	0	94	0	1	3	4	87	3567	2	6	2	10	851	2	3	2	7	839	1	5	24	30	888	3	4	33	40	989	0	2	0	2	116	0.0212765957446809	0.05	0.117290192113246	0.426293103448276	0.0172413793103448	0	0	1	1	112	0.0106382978723404	0.0333333333333333	0.126126126126126	0.264285714285714	0.00892857142857143	0.0106382978723404	1	60	228	1649	0.999590283788385	1	1	0.120603840424867	0.00602872455671002	Inf	0.134958297382801	0	1	1	1	0	0.144429055093875	0.999322186230406	1	1	0.129217659961413	1	1	1	93	86	0
"TCGA-AG-A026-01A-32W-A096-10"	0	0	0	0	218	0	2	2	4	213	8733	7	17	5	29	2173	6	14	7	27	2121	18	14	48	80	2218	19	15	43	77	2221	6	1	4	11	312	0.0504587155963303	0.142857142857143	0.140477262494372	1.01694139194139	0.0352564102564103	9	3	5	17	310	0.0779816513761468	0.2125	0.139765554553652	1.52040322580645	0.0548387096774194	0.110091743119266	24	104	622	3817	0.0860286861104024	1	1	1.41602733617186	0.932826181275343	Inf	1.3381229903537	2.89323889806205	7.52762348767196e-05	0.0045918503274799	0.00918370065495979	4.18239107212018	0.705823115790961	0.904206793827041	1	1	0.67358771127432	0.176476338697089	0.598058703362357	1	194	189	0
"TCGA-AG-A02G-01A-01W-A00E-09"	0	0	0	0	51	0	1	1	2	47	1927	0	1	0	1	451	1	2	2	5	435	0	1	20	21	519	2	3	15	20	522	0	0	1	1	65	0.0196078431372549	0.05	0.124521072796935	0.401538461538462	0.0153846153846154	0	0	2	2	64	0.0392156862745098	0.0952380952380952	0.123314065510597	0.772321428571428	0.03125	0.0588235294117647	3	34	129	912	0.85231891310997	1	1	0.624035036205587	0.160379895748907	Inf	0.654305468258957	0	1	1	1	0	0.691694352159468	0.824972463287447	1	1	0.66301040821284	0.1	0.449606625258802	1	48	44	0
"TCGA-AG-A02N-01A-11W-A096-10"	0	0	0	0	1221	0	13	87	100	1121	45961	6	44	6	56	10157	11	37	8	56	10291	0	43	472	515	12782	3	44	447	494	12731	0	1	1	2	1454	0.00163800163800164	0.00404858299595142	0.114209410101327	0.0354487689968759	0.00137551581843191	0	2	1	3	1376	0.00245700245700246	0.0058252427184466	0.107651384759818	0.0541121020546399	0.00218023255813953	0.00163800163800164	2	920	2830	22683	1	1	1	0.0174334410097889	0.00306273851114094	Inf	0.0195557361090884	0	1	1	1	0	0.0196195742030245	1	1	1	0.0174904878682621	0.444444444444444	1	1	1219	1119	0
"TCGA-AG-A02X-01A-01W-A00E-09"	0	0	0	0	139	1	1	0	1	132	5412	1	6	2	9	1282	5	7	2	14	1343	4	11	45	60	1389	2	11	36	49	1398	0	2	4	6	206	0.0431654676258993	0.122448979591837	0.147353361945637	0.830988706162077	0.029126213592233	1	3	1	5	218	0.0359712230215827	0.0833333333333333	0.156947444204464	0.530963302752294	0.0229357798165138	0.0431654676258993	6	81	424	2363	0.993779671065217	1	1	0.412914547986958	0.174086141404825	Inf	0.453318152244632	1.09551886792453	0.628938956061492	0.957831436875846	1	1.11461362852092	0.405747728860936	0.996053597760246	1	1	0.366741249227239	0.148606811145511	0.549394877568253	1	133	126	0
"TCGA-AG-A032-01A-01W-A00E-09"	0	0	0	0	78	0	0	0	0	74	3034	1	2	2	5	722	0	5	1	6	710	4	5	18	27	787	1	13	22	36	815	0	1	1	2	102	0.0256410256410256	0.0555555555555556	0.125153374233129	0.443899782135076	0.0196078431372549	1	0	0	1	97	0.0128205128205128	0.037037037037037	0.123252858958069	0.300496372661321	0.0103092783505155	0.0256410256410256	2	43	199	1403	0.980429451386535	1	1	0.32806659910536	0.0561406618408928	Inf	0.357788944723618	1.61005025125628	0.485949033024713	0.846939743271643	1	1.76179637510664	0.201256281407035	0.99481712839616	1	1	0.180877942644711	1	1	1	76	72	0
"TCGA-AG-A036-01A-12W-A096-10"	0	0	0	0	150	0	0	1	1	148	6068	8	8	3	19	1456	5	12	4	21	1478	12	6	34	52	1507	7	10	39	56	1627	2	5	3	10	213	0.0666666666666667	0.178571428571429	0.130915795943454	1.3640174379611	0.0469483568075117	3	0	3	6	205	0.04	0.115384615384615	0.136031851360319	0.848217636022514	0.0292682926829268	0.0733333333333333	11	81	418	2716	0.696289951787326	1	1	0.882446962369442	0.47434283080238	Inf	0.896453089244851	1.97305464618484	0.0999242064587814	0.380961037124104	1	2.31987729725928	0.616241725109786	0.934721505880074	1	1	0.581957745458916	1	1	1	139	137	0
"TCGA-AH-6544-01A-11D-1826-10"	0	0	0	0	183	0	0	2	2	181	7421	5	16	6	27	1723	3	25	10	38	1885	0	18	40	58	1946	8	15	35	58	1867	2	2	3	7	269	0.0382513661202186	0.120689655172414	0.144081414033208	0.837649019356493	0.0260223048327138	0	3	4	7	266	0.0382513661202186	0.120689655172414	0.136690647482014	0.882940108892922	0.0263157894736842	0.0491803278688525	9	74	535	3278	0.838876849314833	1	1	0.745239670117117	0.373474742532977	Inf	0.772818376308974	1.78177570093458	0.312806149116074	0.668605716772044	1	2.04192361243406	0.665196261682243	0.914854632010099	1	1	0.630796136252917	0.103188405797102	0.449606625258802	1	174	172	0
"TCGA-AH-6547-01A-11D-1826-10"	0	0	0	0	40	0	0	2	2	38	1558	0	13	0	13	404	0	13	0	13	462	0	4	2	6	327	0	2	4	6	365	0	0	1	1	69	0.025	0.166666666666667	0.189041095890411	0.881642512077295	0.0144927536231884	0	1	0	1	63	0.025	0.166666666666667	0.192660550458716	0.865079365079365	0.0158730158730159	0.025	1	5	132	560	0.720135250269381	1	1	0.848675374441485	0.036155723533324	Inf	0.873737373737374	NA	1	1	1	0	0.873737373737374	0.720135250269381	1	1	0.848675374441485	1	1	1	39	37	0
"TCGA-AH-6549-01A-11D-1826-10"	0	0	0	0	138	0	1	4	5	133	5453	3	17	3	23	1327	1	20	0	21	1359	1	15	27	43	1332	5	14	27	46	1435	3	1	2	6	233	0.0434782608695652	0.130434782608696	0.162369337979094	0.803321515208061	0.0257510729613734	0	1	2	3	197	0.0217391304347826	0.0697674418604651	0.147897897897898	0.471727068823043	0.0152284263959391	0.0507246376811594	7	53	430	2337	0.842284184388233	1	1	0.717891570697872	0.320810130129775	Inf	0.750736434108527	3.21744186046512	0.0523964252632669	0.300879517831208	1	5.42984233486594	0.476658053402239	0.975944942407709	1	1	0.434884514846105	1	1	1	131	126	0
"TCGA-AH-6643-01A-11D-1826-10"	0	0	0	0	191	0	1	2	3	185	7585	0	25	7	32	1879	3	35	11	49	1908	5	8	41	54	1929	4	9	37	50	1869	0	5	1	6	268	0.031413612565445	0.12	0.143392188336009	0.836865671641791	0.0223880597014925	0	1	2	3	283	0.0157068062827225	0.0555555555555556	0.146708138932089	0.378680800942285	0.0106007067137809	0.0157068062827225	3	84	551	3247	0.999837066108147	1	1	0.210510343254701	0.0561364739673025	Inf	0.237686964140434	0	1	1	1	0	0.265112383079715	0.999468568945881	1	1	0.235769545280703	0.205882352941176	0.651958540853412	1	188	182	0
"TCGA-AH-6644-01A-21D-1826-10"	0	0	0	0	139	0	3	4	7	132	5412	2	26	2	30	1275	3	14	0	17	1318	1	6	29	36	1312	4	9	36	49	1507	1	1	2	4	211	0.0287769784172662	0.0816326530612245	0.140013271400133	0.583035109778508	0.018957345971564	0	1	1	2	183	0.0143884892086331	0.0555555555555556	0.139481707317073	0.398299939283546	0.0109289617486339	0.0287769784172662	4	66	394	2425	0.991337519782157	1	1	0.373108244800251	0.123379532949788	Inf	0.408846990572879	1.43096446700508	0.529495546448512	0.884910365297513	1	1.53842713859736	0.330222569308864	0.996050031458562	1	1	0.297894911214391	0.545454545454546	1	1	135	128	0
"TCGA-CI-6619-01B-11D-1826-10"	0	0	0	0	141	0	0	4	4	137	5617	3	27	3	33	1419	3	27	2	32	1487	5	7	21	33	1345	4	7	28	39	1366	1	1	0	2	216	0.0141843971631206	0.0512820512820513	0.158125915080527	0.324311490978158	0.00925925925925926	1	1	1	3	190	0.0212765957446809	0.0909090909090909	0.141263940520446	0.643540669856459	0.0157894736842105	0.0212765957446809	3	55	406	2305	0.994631514239918	1	1	0.309759346681812	0.0817022863910695	Inf	0.34537965007644	1.48385331143952	0.400648240953382	0.740592202974433	1	1.62175106080608	0.136272242887303	0.999626312704555	1	1	0.118322073043069	1	1	1	138	134	0
"TCGA-CI-6620-01A-11D-1826-10"	0	0	0	0	126	0	2	4	6	120	4920	2	27	0	29	1161	1	28	1	30	1247	3	0	21	24	1178	0	6	31	37	1334	0	1	2	3	194	0.0238095238095238	0.0810810810810811	0.145427286356822	0.557536918361661	0.0154639175257732	2	0	0	2	171	0.0158730158730159	0.0833333333333333	0.145161290322581	0.574074074074074	0.0116959064327485	0.0317460317460317	4	51	365	2147	0.966763240918584	1	1	0.461456937057537	0.151405394125478	Inf	0.50052303860523	4.58812785388128	0.0575618485503324	0.300879517831208	1	11.7448492495186	0.264699683877766	0.997057786345984	1	1	0.235367400263858	1	1	1	122	116	0
"TCGA-CI-6621-01A-11D-1826-10"	0	0	0	0	117	0	1	1	2	114	4674	2	9	3	14	1131	2	11	1	14	1182	4	10	27	41	1126	4	9	32	45	1235	1	2	1	4	185	0.0341880341880342	0.0888888888888889	0.149797570850202	0.593393393393393	0.0216216216216216	1	1	1	3	156	0.0256410256410256	0.0731707317073171	0.13854351687389	0.528142589118199	0.0192307692307692	0.0341880341880342	4	63	341	2020	0.990647444929587	1	1	0.376217592426122	0.12414769382131	Inf	0.413358427802337	1.73093841642229	0.326297302830718	0.674514245034427	1	1.9739542670859	0.234703514091158	0.998813283328735	1	1	0.207928974144698	1	1	1	113	110	0
"TCGA-CI-6622-01A-11D-1826-10"	0	0	0	0	175	0	3	2	5	170	6970	0	24	2	26	1751	4	21	1	26	1750	4	15	34	53	1753	2	12	51	65	1716	1	1	3	5	255	0.0285714285714286	0.0769230769230769	0.148601398601399	0.517647058823529	0.0196078431372549	1	5	1	7	250	0.04	0.132075471698113	0.142612664004564	0.92611320754717	0.028	0.0342857142857143	6	85	505	2964	0.993766185211254	1	1	0.414377539587089	0.175086713551927	Inf	0.452921336089653	2.28976897689769	0.213832136443327	0.567120014045346	1	2.93338096322543	0.32326150262085	0.998973123527889	1	1	0.289907162495759	0.64040536122916	1	1	169	164	0
"TCGA-CI-6624-01C-11D-1826-10"	0	0	0	0	300	1	3	2	5	292	11972	11	34	10	55	3017	18	43	15	76	3158	21	20	38	79	2892	14	26	42	82	2905	7	2	6	15	446	0.05	0.182926829268293	0.153528399311532	1.19148528929235	0.0336322869955157	6	3	5	14	409	0.0466666666666667	0.177215189873418	0.141424619640387	1.253071709325	0.0342298288508557	0.08	24	91	855	4942	0.0496250027117542	1	1	1.52429759724634	1.00089930405841	Inf	1.41498093058734	2.51832915622389	0.000980638341985642	0.0239275755444497	0.119637877722248	3.41449899515469	0.932266081871345	0.647185197051215	1	1	0.92146027332981	0.79012274822034	1	1	276	268	0
"TCGA-CL-5917-01A-11D-1657-10"	0	0	0	0	200	0	1	4	5	195	7995	7	44	4	55	1837	1	42	1	44	1917	4	3	36	43	2143	3	10	40	53	2098	1	2	2	5	269	0.025	0.0943396226415094	0.128217349857007	0.735778915620397	0.0185873605947955	0	0	3	3	259	0.015	0.0697674418604651	0.120858609426038	0.57726497261381	0.0115830115830116	0.03	6	77	528	3713	0.954120219855458	1	1	0.548025590613006	0.231050654589269	Inf	0.580640744797371	1.14745670995671	0.606100007728402	0.957831436875846	1	1.17197634500152	0.528434011164274	0.966707911335914	1	1	0.495288468955353	0.118881118881119	0.483449883449884	1	194	189	0
"TCGA-CL-5918-01A-11D-1657-10"	0	0	0	0	228	2	0	2	2	224	9184	5	35	3	43	1944	3	40	8	51	2110	7	12	41	60	2540	4	8	58	70	2590	0	2	0	2	280	0.0087719298245614	0.0285714285714286	0.108108108108108	0.264285714285714	0.00714285714285714	0	1	1	2	269	0.0087719298245614	0.0333333333333333	0.105905511811024	0.314745972738538	0.00743494423791822	0.0043859649122807	1	109	549	4581	0.999995600239979	1	1	0.0765681241560648	0.00385748199593674	Inf	0.0849478390461997	0	1	1	1	0	0.0943864878291108	0.999985082116733	1	1	0.0851623299850121	1	1	1	227	223	0
"TCGA-DC-5337-01A-01D-1657-10"	0	0	0	0	283	1	6	3	9	271	11111	0	61	0	61	2589	2	57	1	60	2508	0	13	58	71	2938	4	14	61	79	3076	0	0	1	1	334	0.00353356890459364	0.0126582278481013	0.108582574772432	0.116576972637004	0.0029940119760479	0	4	4	8	330	0.0282685512367491	0.112676056338028	0.112321307011573	1.00315834400341	0.0242424242424242	0.0176678445229682	5	118	664	5350	0.998282291927292	1	1	0.341447719262921	0.131849080497412	Inf	0.368180037222059	0	1	1	1	0	0.380555836792548	0.997591054356404	1	1	0.353427519812912	0.0294117647058824	0.199346405228758	1	278	266	0
"TCGA-DC-5869-01A-01D-1657-10"	0	0	0	0	184	2	4	9	13	169	6929	1	38	0	39	1454	2	35	1	38	1491	5	5	31	41	1970	4	7	40	51	2014	1	1	3	5	219	0.0271739130434783	0.0980392156862745	0.108738828202582	0.901602650192497	0.0228310502283105	0	1	2	3	198	0.016304347826087	0.0731707317073171	0.100507614213198	0.728011825572801	0.0151515151515152	0.0326086956521739	6	74	417	3567	0.853988682153908	1	1	0.693618644763059	0.29179193959214	Inf	0.716546762589928	1.06155075939249	0.630740121853512	0.957831436875846	1	1.06925032549762	0.672813861586787	0.875789911637468	1	1	0.648086063513979	0.118881118881119	0.483449883449884	1	178	163	0
"TCGA-DC-6155-01A-11D-1657-10"	0	0	0	0	137	1	3	1	4	132	5412	3	23	1	27	1114	0	29	0	29	1261	2	6	21	29	1537	4	4	39	47	1500	2	0	3	5	165	0.0364963503649635	0.106382978723404	0.11	0.967117988394584	0.0303030303030303	0	0	1	1	166	0.0072992700729927	0.0344827586206897	0.108002602472349	0.319277108433735	0.00602409638554217	0.0437956204379562	6	60	331	2706	0.738165477091215	1	1	0.817590188323202	0.341199524374302	Inf	0.83411150782752	3.05840886203424	0.133141230064547	0.451200835218743	1	4.08497703211991	0.611681772406848	0.903054418637445	1	1	0.584028022009583	0.567099567099567	1	1	131	126	0
"TCGA-DC-6157-01A-11D-1657-10"	0	0	0	0	175	1	1	3	4	170	6970	5	36	1	42	1657	1	39	2	42	1668	5	5	32	42	1780	6	10	28	44	1865	0	2	2	4	210	0.0228571428571429	0.0909090909090909	0.112600536193029	0.807359307359307	0.019047619047619	3	1	2	6	212	0.0342857142857143	0.142857142857143	0.119101123595506	1.19946091644205	0.0283018867924528	0.04	7	64	422	3223	0.728165844850616	1	1	0.835402856644386	0.376030769187158	Inf	0.85157866631066	2.35566566135287	0.126879923545258	0.447415426946292	1	2.86284746720798	0.575829383886256	0.926980138733232	1	1	0.545603245177373	1	1	1	168	163	0
"TCGA-DC-6158-01A-11D-1657-10"	0	0	0	0	133	1	1	3	4	126	5166	1	30	1	32	1237	1	28	0	29	1329	2	2	29	33	1295	3	1	28	32	1305	0	0	4	4	197	0.0300751879699248	0.125	0.15095785440613	0.828045685279188	0.0203045685279188	0	1	1	2	185	0.0150375939849624	0.0606060606060606	0.142857142857143	0.424242424242424	0.0108108108108108	0.037593984962406	5	57	382	2218	0.959337798510792	1	1	0.509427867536334	0.192802946368108	Inf	0.548893767944604	0	1	1	1	0	0.597042344080095	0.934113630376844	1	1	0.558398796756492	0.0151515151515152	0.123232323232324	1	128	121	0
"TCGA-DC-6160-01A-11D-1657-10"	0	0	0	0	187	3	2	5	7	176	7216	4	42	2	48	1627	1	39	2	42	1650	1	6	38	45	1968	1	4	36	41	1971	1	1	3	5	227	0.0267379679144385	0.121951219512195	0.115169964485033	1.05888041259267	0.0220264317180617	0	3	2	5	217	0.0267379679144385	0.111111111111111	0.110264227642276	1.00768049155146	0.0230414746543779	0.0320855614973262	6	70	444	3495	0.869439623082091	1	1	0.6747678751772	0.283482915494687	Inf	0.700391180654339	4.43581081081081	0.213106519126661	0.567120014045346	1	7.86366738625615	0.599433893352812	0.929179956503928	1	1	0.570472581372878	0.140866873065015	0.544642857142858	1	181	170	0
"TCGA-DC-6681-01A-11D-1826-10"	0	0	0	0	178	0	4	0	4	174	7134	0	30	7	37	1721	1	30	3	34	1638	6	4	33	43	1904	6	7	47	60	1871	2	0	2	4	246	0.0224719101123595	0.0666666666666667	0.13148049171566	0.507046070460705	0.016260162601626	2	0	3	5	232	0.0280898876404494	0.116279069767442	0.121848739495798	0.954290296712109	0.021551724137931	0.050561797752809	9	83	478	3297	0.836931099261373	1	1	0.747971634471384	0.375998679530109	Inf	0.772580498453702	2.63249651324965	0.0555974721592623	0.300879517831208	1	3.44687906552164	0.49359309623431	0.97898940059717	1	1	0.459901378254905	1	1	1	169	165	0
"TCGA-DC-6682-01A-11D-1826-10"	0	0	0	0	203	2	4	4	8	193	7913	2	22	1	25	1867	1	39	5	45	2061	4	8	42	54	1913	5	13	51	69	2072	2	1	2	5	308	0.0246305418719212	0.072463768115942	0.148648648648649	0.487483530961792	0.0162337662337662	2	2	3	7	243	0.0344827586206897	0.12962962962963	0.127025614218505	1.0204999237921	0.0288065843621399	0.0443349753694581	9	93	551	3434	0.951910455360714	1	1	0.603190445130785	0.304422244354086	Inf	0.638144550016014	3.21435773341399	0.0260855153439905	0.208375039861594	1	4.98278807124634	0.388833596783951	0.997290287159551	1	1	0.354169650291552	1	1	1	194	184	0
"TCGA-DC-6683-01A-11D-1826-10"	0	0	0	0	118	3	0	0	0	115	4715	4	21	1	26	1256	4	19	0	23	1221	2	5	19	26	1114	3	8	29	40	1124	1	1	1	3	180	0.0254237288135593	0.075	0.160142348754448	0.468333333333333	0.0166666666666667	2	2	2	6	165	0.0508474576271186	0.230769230769231	0.148114901256732	1.55804195804196	0.0363636363636364	0.0508474576271186	6	47	345	1893	0.844811437633864	1	1	0.700560713318969	0.289597718119499	Inf	0.734372436423298	3.89217391304348	0.0290358662102221	0.208375039861594	1	8.21818828604096	0.405434782608696	0.984200809811059	1	1	0.365909160177365	1	1	1	112	109	0
"TCGA-DT-5265-01A-21D-1826-10"	0	0	0	0	118	0	2	2	4	114	4674	2	19	0	21	1121	0	20	1	21	1228	2	7	26	35	1169	2	4	31	37	1156	0	1	4	5	190	0.0423728813559322	0.135135135135135	0.164359861591695	0.822190611664296	0.0263157894736842	0	1	2	3	156	0.0254237288135593	0.0857142857142857	0.133447390932421	0.642307692307692	0.0192307692307692	0.0508474576271186	6	55	346	1979	0.905740658151056	1	1	0.624069353990326	0.259601972529533	Inf	0.660949493035156	0	1	1	1	0	0.707331913599026	0.868253018757733	1	1	0.672999792400662	0.00699300699300699	0.0853146853146853	0.853146853146853	112	108	0
"TCGA-DY-A0XA-01A-11D-A152-10"	0	0	0	0	326	0	1	1	2	323	13243	9	72	5	86	3334	5	65	3	73	3390	14	25	40	79	3269	10	22	53	85	3250	3	2	6	11	476	0.0337423312883436	0.129411764705882	0.146461538461538	0.883588729609491	0.023109243697479	5	4	5	14	478	0.0429447852760736	0.177215189873418	0.146222086264913	1.21195911233515	0.0292887029288703	0.0582822085889571	19	98	954	5565	0.351741510222528	1	1	1.13089483564969	0.710765830357272	Inf	1.10968660968661	2.27777777777778	0.0175512109382931	0.17843731120598	1	2.91600166484741	0.808243727598566	0.816954579442117	1	1	0.782547501541979	0.560744103424875	1	1	307	304	0
"TCGA-DY-A1DC-01A-31D-A152-10"	0	0	0	0	207	1	1	1	2	204	8364	7	47	2	56	2171	4	32	7	43	2071	7	13	26	46	2088	14	14	31	59	2034	4	4	3	11	292	0.0531400966183575	0.186440677966102	0.143559488692232	1.29869979103785	0.0376712328767123	1	3	1	5	302	0.0241545893719807	0.108695652173913	0.14463601532567	0.751511661387849	0.0165562913907285	0.0434782608695652	9	69	594	3528	0.80830324617445	1	1	0.774747236295677	0.387525128604201	Inf	0.800699300699301	1.65223665223665	0.176710373698206	0.517823284358882	1	1.85568924562904	0.486975013290803	0.972011431124029	1	1	0.448319221478611	1	1	1	198	195	0
"TCGA-DY-A1DD-01A-21D-A152-10"	0	0	0	0	231	1	4	6	10	219	8979	5	51	2	58	2259	7	31	1	39	2306	4	15	43	62	2248	1	13	46	60	2166	0	5	4	9	330	0.038961038961039	0.15	0.152354570637119	0.984545454545455	0.0272727272727273	0	1	3	4	309	0.0173160173160173	0.0645161290322581	0.137455516014235	0.469360058461217	0.0129449838187702	0.0303030303030303	7	87	639	3775	0.987045881440764	1	1	0.475392476408257	0.216381564550529	Inf	0.514400825758332	0	1	1	1	0	0.543299748553744	0.97934941129306	1	1	0.504375754911938	0.00521739130434783	0.0785829307568439	0.636521739130435	224	212	0
"TCGA-DY-A1DF-01A-11D-A152-10"	0	0	0	0	186	1	2	3	5	179	7339	5	25	7	37	1862	3	26	2	31	1831	7	9	39	55	1789	7	8	41	56	1857	4	3	0	7	270	0.0376344086021505	0.125	0.145395799676898	0.859722222222222	0.0259259259259259	2	2	2	6	274	0.032258064516129	0.109090909090909	0.153158188932364	0.71227604512276	0.0218978102189781	0.043010752688172	8	86	544	3102	0.97656018175553	1	1	0.530512992278408	0.255261682570314	Inf	0.570400500625782	2.87237394957983	0.0114745356740415	0.127263032021188	1	4.2743390070296	0.167555147058824	0.999959348660736	1	1	0.146249392799634	0.201556064073226	0.651958540853412	1	178	171	0
"TCGA-DY-A1DG-01A-11D-A152-10"	0	0	0	0	335	1	2	6	8	324	13284	7	62	2	71	3258	8	50	0	58	3222	3	21	64	88	3372	8	28	71	107	3432	2	6	7	15	494	0.0447761194029851	0.14018691588785	0.143939393939394	0.973930152484014	0.0303643724696356	0	4	9	13	479	0.0388059701492537	0.147727272727273	0.142052194543298	1.0399506547732	0.0271398747390397	0.0537313432835821	18	128	973	5831	0.783375112576838	1	1	0.842758114327533	0.527576239264084	Inf	0.862126736966591	1.27141922825376	0.481090433914812	0.846939743271643	1	1.33167070308118	0.828776978417266	0.823033963834145	1	1	0.805779070994293	0.000114104820121922	0.00464026268495816	0.0139207880548745	317	306	0
"TCGA-DY-A1H8-01A-21D-A152-10"	0	0	0	0	168	0	2	1	3	164	6724	1	28	2	31	1717	1	30	2	33	1636	3	11	39	53	1682	2	7	38	47	1689	0	2	1	3	234	0.0178571428571429	0.0638297872340425	0.13854351687389	0.460720130932897	0.0128205128205128	1	3	1	5	254	0.0297619047619048	0.0943396226415094	0.151010701545779	0.624721438122122	0.0196850393700787	0.0178571428571429	3	79	488	2883	0.999673760921469	1	1	0.224403755423351	0.0597366747009237	Inf	0.252723910435826	1.38155737704918	0.542907994008082	0.895064530661973	1	1.47674714951558	0.179423035980413	0.999908568813859	1	1	0.15758551739842	1	1	1	165	161	0
"TCGA-EF-5830-01A-01D-1657-10"	0	0	0	0	291	1	0	0	0	289	11849	3	86	7	96	2639	3	84	6	93	2758	4	12	38	54	3158	1	19	26	46	3294	1	1	4	6	405	0.0206185567010309	0.130434782608696	0.122950819672131	1.06086956521739	0.0148148148148148	0	1	5	6	352	0.0206185567010309	0.111111111111111	0.111462951234959	0.996843434343434	0.0170454545454545	0.0343642611683849	10	59	757	5695	0.289786626728036	1	1	1.27505179318407	0.658609083845956	Inf	1.23523443034097	1.70462351387054	0.464511868671228	0.833388940851321	1	1.88047625248825	1.19856340819022	0.336434970991654	1	1	1.23101238080216	0.00275945618522009	0.0480933792281216	0.336653654596851	281	279	0
"TCGA-EI-6506-01A-11D-1733-10"	0	0	0	0	262	0	3	5	8	253	10373	5	20	1	26	2561	9	28	4	41	2606	6	25	60	91	2613	8	20	67	95	2593	3	7	4	14	383	0.0534351145038168	0.147368421052632	0.147705360586194	0.997718840181393	0.0365535248041775	0	9	4	13	389	0.049618320610687	0.142857142857143	0.148871029468044	0.959603378626515	0.0334190231362468	0.0419847328244275	11	130	772	4434	0.995732049642114	1	1	0.486044666046226	0.26556068393598	Inf	0.526090471465844	1.44504071058475	0.34576191742961	0.69152383485922	1	1.56625377865222	0.424788870303129	0.999032488573613	1	1	0.386166978449447	0.175080710726683	0.598058703362357	1	251	242	0
"TCGA-EI-6507-01A-11D-1733-10"	0	0	0	0	1086	0	41	147	188	898	36818	10	68	4	82	8320	14	63	6	83	8347	4	51	306	361	9960	5	74	293	372	10191	1	8	6	15	1206	0.0138121546961326	0.0403225806451613	0.118339711510156	0.340735836944311	0.0124378109452736	0	8	8	16	1142	0.0147329650092081	0.0443213296398892	0.114658634538153	0.386550300537037	0.0140105078809107	0.0138121546961326	15	593	2348	17803	1	1	1	0.191800869325677	0.117371070098972	Inf	0.211731849054066	0.953577512776831	0.672148124721192	0.985766927516092	1	0.947773202559119	0.200585586994793	1	1	1	0.181462328522869	0.000183147697995668	0.00558600478886787	0.0223440191554715	1071	883	0
"TCGA-EI-6508-01A-11D-1733-10"	0	0	0	0	172	2	0	2	2	168	6888	3	19	4	26	1643	5	27	5	37	1727	1	12	36	49	1685	5	9	42	56	1833	2	1	4	7	239	0.0406976744186047	0.125	0.130387343153301	0.958682008368201	0.0292887029288703	0	0	1	1	255	0.00581395348837209	0.0204081632653061	0.1513353115727	0.134853941576631	0.00392156862745098	0.0406976744186047	7	77	494	3024	0.958915141219299	1	1	0.556571831606112	0.252187319679026	Inf	0.593454790823212	2.37381916329285	0.201899848422637	0.564319697037466	1	3.05934514373963	0.456503685248625	0.988733022336785	1	1	0.419350906745947	0.314685314685315	0.936380692478254	1	165	161	0
"TCGA-EI-6510-01A-11D-1733-10"	0	0	0	0	262	1	0	8	8	251	10291	2	39	2	43	2471	6	54	1	61	2753	3	10	58	71	2478	0	18	58	76	2589	0	3	5	8	413	0.0305343511450382	0.105263157894737	0.159521050598687	0.659870014018096	0.0193704600484262	1	0	2	3	340	0.0114503816793893	0.0422535211267606	0.137207425343019	0.307953603976802	0.00882352941176471	0.0305343511450382	8	111	753	4314	0.99784061396208	1	1	0.412956713309271	0.200238600643806	Inf	0.452375372459741	2.24302788844621	0.383155750982504	0.725809826855656	1	2.86371749698161	0.406065393598022	0.998991786025446	1	1	0.367971415109717	0.0237358101135191	0.170339343167608	1	254	243	0
"TCGA-F5-6464-01A-11D-1733-10"	0	0	0	0	143	0	2	3	5	137	5617	1	25	9	35	1384	3	15	7	25	1523	3	12	21	36	1297	5	10	26	41	1413	1	4	3	8	241	0.0559440559440559	0.195121951219512	0.170559094125973	1.14401376378909	0.033195020746888	0	1	0	1	221	0.00699300699300699	0.0277777777777778	0.170393215111796	0.163021618903972	0.00452488687782805	0.027972027972028	4	51	462	2248	0.989199035833843	1	1	0.381724714068997	0.125392487613223	Inf	0.426603699330972	0.733225108225108	0.775995738216824	1	1	0.695198592009811	0.374412821221332	0.991086692264722	1	1	0.331848727177191	0.576470588235294	1	1	139	133	0
"TCGA-F5-6465-01A-11D-1733-10"	0	0	0	0	213	1	0	4	4	207	8487	5	34	2	41	2189	5	39	3	47	2205	6	13	46	65	2018	5	9	40	54	2075	1	2	2	5	311	0.0234741784037559	0.0925925925925926	0.149879518072289	0.617780159580803	0.0160771704180064	3	2	2	7	308	0.0328638497652582	0.107692307692308	0.152626362735382	0.705594405594406	0.0227272727272727	0.0375586854460094	8	89	619	3474	0.984352479478795	1	1	0.504542616751072	0.243104133367732	Inf	0.545342504538414	2.40446467910119	0.0717836252878831	0.312771510182919	1	3.20572819771285	0.307547807792013	0.99942231160725	1	1	0.273823119060672	1	1	1	205	199	0
"TCGA-F5-6571-01A-12D-1826-10"	0	0	0	0	144	0	0	4	4	140	5740	0	23	0	23	1390	4	23	0	27	1476	1	15	25	41	1457	2	7	40	49	1417	1	1	3	5	210	0.0347222222222222	0.102040816326531	0.148200423429781	0.688532555879495	0.0238095238095238	1	4	5	10	214	0.0694444444444444	0.24390243902439	0.146877144818119	1.66058810120811	0.0467289719626168	0.0694444444444444	10	58	424	2450	0.557761275671209	1	1	0.996260156696943	0.512543876290743	Inf	0.99680910099889	4.5188679245283	0.0591894133438443	0.300879517831208	1	11.5401143048383	0.834252539912917	0.760570191449664	1	1	0.811044024196145	0.0501749125437281	0.278242696833401	1	134	130	0
"TCGA-F5-6702-01A-11D-1826-10"	0	0	0	0	89	0	0	2	2	87	3567	0	14	2	16	841	2	15	1	18	933	0	4	17	21	857	0	8	24	32	936	0	1	2	3	140	0.0337078651685393	0.09375	0.14957264957265	0.626785714285714	0.0214285714285714	0	0	1	1	104	0.0112359550561798	0.0476190476190476	0.121353558926488	0.392399267399267	0.00961538461538462	0.0337078651685393	3	38	244	1549	0.929829337711361	1	1	0.501335828562096	0.130238763560332	Inf	0.537684926029588	NA	1	1	1	0	0.537684926029588	0.929829337711361	1	1	0.501335828562096	0.142857142857143	0.544642857142858	1	86	84	0
"TCGA-F5-6811-01A-11D-1826-10"	0	0	0	0	178	0	3	2	5	173	7093	3	37	1	41	1733	0	27	2	29	1741	0	5	34	39	1771	4	4	56	64	1848	0	1	1	2	259	0.0112359550561798	0.03125	0.140151515151515	0.222972972972973	0.00772200772200772	0	0	3	3	254	0.0168539325842697	0.0769230769230769	0.143421795595709	0.536341611144761	0.0118110236220472	0.0224719101123595	4	90	513	3106	0.999530380705661	1	1	0.269152040026943	0.0897851662774882	Inf	0.300194931773879	0	1	1	1	0	0.313536928741607	0.999242963052923	1	1	0.281669504909933	0.0476190476190476	0.276643990929705	1	174	169	0
"TCGA-F5-6812-01A-11D-1826-10"	0	0	0	0	134	0	0	4	4	129	5289	3	23	3	29	1332	3	18	4	25	1391	2	13	21	36	1291	3	5	31	39	1275	1	1	1	3	213	0.0223880597014925	0.0769230769230769	0.167058823529412	0.460455037919827	0.0140845070422535	2	2	1	5	192	0.0373134328358209	0.138888888888889	0.148721920991479	0.933883101851852	0.0260416666666667	0.0373134328358209	5	52	405	2161	0.957131741331985	1	1	0.513165639799979	0.193649819015607	Inf	0.555772146415421	3.80148148148148	0.0309131617183179	0.209522540535266	1	7.99511865974443	0.243684710351377	0.998498720417781	1	1	0.213505979501876	1	1	1	129	124	0
"TCGA-F5-6813-01A-11D-1826-10"	0	0	0	0	189	0	3	2	5	184	7544	2	25	5	32	1848	2	27	1	30	1905	8	12	42	62	1964	6	10	44	60	1827	3	3	5	11	259	0.0582010582010582	0.183333333333333	0.14176245210728	1.29324324324324	0.0424710424710425	3	2	4	9	266	0.0476190476190476	0.145161290322581	0.135437881873727	1.07179238418627	0.0338345864661654	0.0793650793650794	15	85	525	3266	0.415059913011344	1	1	1.09781695091772	0.646943827626889	Inf	1.08314285714286	3.09469387755102	0.0079763534670219	0.121639390372084	0.973115122976672	4.66296435900392	0.755681063122924	0.856700117031116	1	1	0.727178560535809	0.514475543396567	1	1	174	169	0
"TCGA-G5-6235-01A-11D-1733-10"	0	0	0	0	260	1	0	0	0	259	10619	4	26	4	34	2570	7	26	3	36	2781	1	24	55	80	2595	3	31	75	109	2673	0	8	6	14	405	0.0538461538461538	0.128440366972477	0.151515151515152	0.847706422018349	0.0345679012345679	0	6	1	7	352	0.0269230769230769	0.0875	0.135645472061657	0.645063920454545	0.0198863636363636	0.0269230769230769	7	127	757	4511	0.999771232961631	1	1	0.328496357590379	0.150848165840051	Inf	0.363532404030048	0	1	1	1	0	0.374718016461742	0.999646474168248	1	1	0.339178296898973	0.00862025252269155	0.0920060331825037	1	253	252	0
"TCGA-G5-6641-01A-11D-1826-10"	0	0	0	0	121	2	1	3	4	115	4715	1	16	2	19	1166	5	20	1	26	1240	2	9	31	42	1132	3	3	22	28	1177	2	0	0	2	187	0.0165289256198347	0.0714285714285714	0.158878504672897	0.449579831932773	0.0106951871657754	0	3	0	3	161	0.0247933884297521	0.0714285714285714	0.142226148409894	0.502218278615794	0.0186335403726708	0.0165289256198347	2	56	348	1961	0.9990642955839	1	1	0.201330394473694	0.0348241646547092	Inf	0.228795085216013	2.65402298850575	0.16694524647525	0.509183001749512	1	3.75359405005221	0	1	1	1	0	0.444444444444444	1	1	119	113	0
"Totals"	0	0	0	0	31952	54	239	479	718	31071	1273911	368	2466	879	3713	324390	396	2430	938	3764	329325	391	3951	7319	11661	308484	443	3927	7563	11933	311712	131	2522	478	3131	48087	0.0979907361041562	0.262381630771809	0.154267400677549	1.70082356751601	0.0651111527023936	108	2579	437	3124	47129	0.0977716574862293	0.267901552182489	0.152776156948172	1.75355603605981	0.0662861507776528	0.0361166750125188	1154	14562	95216	524980	1	NA	NA	0.436933399167735	0.415072514756255	Inf	0.478280656454624	1.86659835297616	1.51860875191021e-22	NA	NA	2.21469648670492	0.400478146113341	1	NA	NA	0.36120117092757	2.60041888117485e-102	NA	NA	30798	29917	NA
