"Sample"	"A_T_coord_clusters"	"G_C_coord_clusters"	"Non_coord_clusters"	"clusters"	"mutations"	"complex"	"insertions"	"deletions"	"indels"	"substitutions"	"bases"	"A_to_T"	"A_to_G"	"A_to_C"	"A"	"a"	"T_to_A"	"T_to_C"	"T_to_G"	"T"	"t"	"G_to_C"	"G_to_T"	"G_to_A"	"G"	"g"	"C_to_G"	"C_to_A"	"C_to_T"	"C"	"c"	"tCw_to_G"	"tCw_to_A"	"tCw_to_T"	"tCw"	"tcw"	"tCw_per_mut"	"tCw_per_C"	"tcw_per_c"	"enrich_tCw"	"freq_tCw"	"wGa_to_C"	"wGa_to_T"	"wGa_to_A"	"wGa"	"wga"	"wGa_per_mut"	"wGa_per_G"	"wga_per_g"	"enrich_wGa"	"freq_wGa"	"[tCw_to_G+tCw_to_T]_per_mut"	"tCw_to_G+tCw_to_T"	"[(C_to_G)+(C_to_T)]-[(tCw_to_G)+(tCw_to_T)]"	"tcw+wga"	"c-tcw"	"Fisher_p-value_tCw"	"BH_Fisher_p-value_tCw"	"bonferroni_Fisher_p-value_tCw"	"odds_ratio_tCw"	"95%_confidence_lower_tCw"	"95%_confidence_upper_tCw"	"APOBEC_enrich"	"tCw_to_G_enrich"	"Fisher_p-value_tCw_to_G"	"BH_Fisher_p-value_tCw_to_G"	"bonferroni_Fisher_p-value_tCw_to_G"	"odds_ratio_tCw_to_G"	"tCw_to_T_enrich"	"Fisher_p-value_tCw_to_T"	"BH_Fisher_p-value_tCw_to_T"	"bonferroni_Fisher_p-value_tCw_to_T"	"odds_ratio_tCw_to_T"	"p-value_GvT_skew"	"BH_p-value_GvT_skew"	"bonferroni_p-value_GvT_skew"	"non-APOBEC_mutations"	"non-APOBEC_substitutions"	"APOBEC_MutLoad_MinEstimate"
"TCGA-AF-2687-01A-02D-1733-10"	0	0	1	1	191	0	0	3	3	188	7708	3	36	1	40	1774	3	25	0	28	1790	5	12	52	69	2082	0	9	42	51	2062	0	0	3	3	252	0.0157068062827225	0.0588235294117647	0.122211445198836	0.481325863678805	0.0119047619047619	1	1	3	5	281	0.0261780104712042	0.072463768115942	0.134966378482229	0.536902367321677	0.0177935943060498	0.0366492146596859	7	92	533	3611	0.976240455714102	1	1	0.515543235256481	0.234842077691744	Inf	0.549737525347281	1.55497185741088	0.498039444855397	0.832339894141896	1	1.69344912333369	0.496267614067303	0.985425147501328	1	1	0.461987314843286	0.0405594405594406	0.274902874902875	1	184	181	0
"TCGA-AF-2689-01A-01W-0831-10"	0	0	0	0	63	0	1	0	1	62	2542	4	8	3	15	646	2	7	1	10	641	3	2	17	22	610	3	3	9	15	645	0	1	1	2	95	0.0317460317460317	0.133333333333333	0.147286821705426	0.905263157894737	0.0210526315789474	1	1	2	4	97	0.0634920634920635	0.181818181818182	0.159016393442623	1.14339268978444	0.0412371134020619	0.0634920634920635	4	28	192	1063	0.742858943593363	1	1	0.791056608024652	0.251284713013187	Inf	0.817057291666667	1.08940972222222	0.631701070045371	0.934751161288476	1	1.10723120871303	0.754206730769231	0.782391245890608	1	1	0.722312315998172	0.545454545454546	1	1	59	58	0
"TCGA-AF-2691-01A-01W-0831-10"	0	0	0	0	72	0	0	0	0	72	2952	5	2	0	7	716	2	5	1	8	733	1	12	16	29	730	6	10	12	28	773	1	2	1	4	120	0.0555555555555556	0.142857142857143	0.155239327296248	0.920238095238095	0.0333333333333333	0	1	0	1	105	0.0138888888888889	0.0344827586206897	0.143835616438356	0.239737274220033	0.00952380952380952	0.0277777777777778	2	33	225	1278	0.974783575368433	1	1	0.344406008915689	0.0584485900576782	Inf	0.381714285714286	0.954285714285714	0.6793360676997	0.963105618837561	1	0.946691255705624	0.238571428571429	0.989061082999538	1	1	0.210494807104675	1	1	1	70	70	0
"TCGA-AF-2692-01A-01W-0831-10"	0	0	0	0	39	0	1	1	2	37	1517	2	4	0	6	352	0	2	0	2	381	1	1	12	14	405	1	2	12	15	379	1	0	0	1	51	0.0256410256410256	0.0666666666666667	0.134564643799472	0.495424836601307	0.0196078431372549	0	1	2	3	47	0.0769230769230769	0.214285714285714	0.116049382716049	1.84650455927052	0.0638297872340425	0.0769230769230769	3	23	98	686	0.649788517365541	1	1	0.913123603962913	0.228962991211589	Inf	0.923076923076923	4	0.236184178538435	0.576289395633781	1	6.96961280997499	0.666666666666667	0.820074959172692	1	1	0.636667426956065	1	1	1	36	34	0
"TCGA-AF-2693-01A-02D-1733-10"	0	0	0	0	252	1	0	3	3	248	10168	4	53	1	58	2508	6	56	1	63	2541	2	14	43	59	2625	1	12	55	68	2494	0	1	3	4	367	0.0158730158730159	0.0588235294117647	0.147153167602245	0.399743548645616	0.0108991825613079	0	6	4	10	384	0.0396825396825397	0.169491525423729	0.146285714285714	1.15863347457627	0.0260416666666667	0.0277777777777778	7	94	751	4368	0.994317960444746	1	1	0.433174487177696	0.197687903714416	Inf	0.472413020263411	0	1	1	1	0	0.486874643332699	0.992332504169383	1	1	0.447453461692189	0.00579710144927537	0.0785829307568439	0.707246376811595	245	241	0
"TCGA-AF-3400-01A-01W-0831-10"	0	0	0	0	29	1	0	0	0	28	1148	1	4	0	5	267	0	1	1	2	262	1	1	10	12	328	1	2	6	9	291	0	0	0	0	38	0	0	0.130584192439863	0	0	0	0	0	0	33	0	0	0.100609756097561	0	0	0	0	18	71	548	1	1	1	0	0	Inf	0	0	1	1	1	0	0	1	1	1	0	1	1	1	29	28	0
"TCGA-AF-3913-01A-02W-1073-09"	0	0	0	0	114	0	1	2	3	110	4510	3	3	4	10	1067	3	8	1	12	1155	10	13	16	39	1206	6	9	34	49	1082	4	2	3	9	160	0.0789473684210526	0.183673469387755	0.147874306839187	1.24209183673469	0.05625	4	0	3	7	165	0.0614035087719298	0.179487179487179	0.13681592039801	1.31188811188811	0.0424242424242424	0.12280701754386	14	52	325	1963	0.0823595980696246	1	1	1.62575476059343	0.916942857031148	Inf	1.49333333333333	3.52	0.000781971771616899	0.0238501390343154	0.0954005561372617	6.0323818857151	0.8448	0.731823719315564	1	1	0.823700596161857	0.722393472194293	1	1	100	96	0
"TCGA-AF-4110-01A-02D-1733-10"	0	0	0	0	134	1	5	1	6	127	5207	2	30	1	33	1283	2	17	1	20	1288	2	7	24	33	1261	5	9	27	41	1375	1	2	2	5	195	0.0373134328358209	0.121951219512195	0.141818181818182	0.859912445278299	0.0256410256410256	1	2	1	4	175	0.0298507462686567	0.121212121212121	0.13877874702617	0.873419913419913	0.0228571428571429	0.0373134328358209	5	53	370	2266	0.922739895345679	1	1	0.577865232983886	0.21810962137464	Inf	0.614165890027959	2.03552123552124	0.257587762371384	0.591812635073957	1	2.44869164634099	0.419077901430843	0.980107370662576	1	1	0.382866379212585	1	1	1	129	122	0
"TCGA-AF-5654-01A-01D-1657-10"	0	0	0	0	175	2	3	0	3	170	6970	4	21	1	26	1703	2	20	0	22	1658	3	8	41	52	1866	6	12	52	70	1743	1	2	3	6	210	0.0342857142857143	0.0857142857142857	0.120481927710843	0.711428571428571	0.0285714285714286	2	3	0	5	247	0.0285714285714286	0.0961538461538462	0.132368703108253	0.726409218312052	0.0202429149797571	0.0342857142857143	6	96	457	3152	0.991593353645053	1	1	0.431143247595515	0.182621712577339	Inf	0.464538550650019	2.63238512035011	0.0954677958442057	0.363970971656034	1	3.44663156508376	0.254746947130656	0.999609057162411	1	1	0.229958950740734	1	1	1	169	164	0
"TCGA-AF-6136-01A-11D-1826-10"	0	0	0	0	195	1	1	3	4	190	7790	0	33	1	34	1893	1	35	1	37	1987	4	6	54	64	1953	1	10	44	55	1957	0	0	3	3	296	0.0153846153846154	0.0545454545454545	0.151251916198263	0.360626535626536	0.0101351351351351	3	1	1	5	271	0.0256410256410256	0.078125	0.138760880696365	0.563018911439114	0.018450184501845	0.0358974358974359	7	96	567	3343	0.994646040006969	1	1	0.429977877718681	0.196108287521067	Inf	0.468656358623996	4.13756613756614	0.0244307622466114	0.192630465491309	1	8.83551971480781	0.281467084188173	0.999785503319856	1	1	0.250944231100451	1	1	1	188	183	0
"TCGA-AF-6655-01A-11D-1826-10"	0	0	0	0	140	0	0	7	7	133	5453	2	25	1	28	1318	2	23	0	25	1439	2	12	30	44	1329	1	12	23	36	1367	0	2	1	3	217	0.0214285714285714	0.0833333333333333	0.158741770299927	0.524961597542243	0.0138248847926267	1	2	1	4	186	0.0285714285714286	0.0909090909090909	0.139954853273138	0.649560117302053	0.021505376344086	0.0214285714285714	3	53	403	2293	0.99296421443289	1	1	0.322153966507965	0.0848803729293759	Inf	0.358383551931939	2.22994210090984	0.38531249968332	0.71224431759644	1	2.84339047792582	0.252446275574699	0.997963305666709	1	1	0.223202439824267	1	1	1	137	130	0
"TCGA-AF-6672-01A-11D-1826-10"	0	0	0	0	146	1	1	2	3	142	5822	3	23	1	27	1415	4	28	1	33	1505	3	10	22	35	1417	7	4	36	47	1485	4	1	2	7	223	0.0479452054794521	0.148936170212766	0.15016835016835	0.991794676080527	0.031390134529148	1	1	2	4	207	0.0273972602739726	0.114285714285714	0.146083274523642	0.782332643202208	0.0193236714975845	0.0616438356164384	9	59	430	2472	0.69399176727999	1	1	0.876988225611973	0.435212039549407	Inf	0.893228454172367	3.37441860465116	0.00957305475325146	0.106173879990607	1	5.74340527944726	0.465437048917402	0.978982832575531	1	1	0.425928993184406	1	1	1	137	133	0
"TCGA-AG-3574-01A-01W-0831-10"	0	0	0	0	41	0	1	0	1	40	1640	1	0	0	1	416	1	4	1	6	414	0	4	15	19	391	0	6	8	14	419	0	2	0	2	57	0.0487804878048781	0.142857142857143	0.136038186157518	1.05012531328321	0.0350877192982456	0	2	0	2	61	0.0487804878048781	0.105263157894737	0.156010230179028	0.674719585849871	0.0327868852459016	0	0	23	118	692	1	1	1	0	0	Inf	0	NA	1	1	1	0	0	1	1	1	0	1	1	1	41	40	0
"TCGA-AG-3575-01A-01W-0831-10"	0	0	0	0	51	0	0	1	1	50	2050	2	4	3	9	508	1	2	0	3	522	1	1	19	21	483	0	6	11	17	537	0	2	0	2	82	0.0392156862745098	0.117647058823529	0.152700186219739	0.770444763271162	0.024390243902439	0	1	0	1	62	0.0196078431372549	0.0476190476190476	0.128364389233954	0.370967741935484	0.0161290322580645	0	0	31	144	876	1	1	1	0	0	Inf	0	0	1	1	1	0	0	1	1	1	0	1	1	1	51	50	0
"TCGA-AG-3578-01A-01W-0831-10"	0	0	0	0	25	1	0	0	0	24	984	2	0	0	2	246	0	2	1	3	245	0	1	7	8	242	1	3	7	11	251	0	0	0	0	38	0	0	0.151394422310757	0	0	0	0	0	0	36	0	0	0.148760330578512	0	0	0	0	15	74	419	1	1	1	0	0	Inf	0	0	1	1	1	0	0	1	1	1	0	1	1	1	25	24	0
"TCGA-AG-3580-01A-01W-0831-10"	0	1	0	1	42	0	0	1	1	41	1681	0	2	0	2	430	0	1	0	1	402	0	5	20	25	429	0	2	11	13	420	0	1	0	1	66	0.0238095238095238	0.0769230769230769	0.157142857142857	0.48951048951049	0.0151515151515152	0	2	2	4	68	0.0952380952380952	0.16	0.158508158508158	1.00941176470588	0.0588235294117647	0.0476190476190476	2	29	134	715	0.9656513958641	1	1	0.368284272407581	0.0618816716354453	Inf	0.408762638420799	NA	1	1	1	0	0.408762638420799	0.9656513958641	1	1	0.368284272407581	0.444444444444444	1	1	40	39	0
"TCGA-AG-3581-01A-01W-0831-10"	0	0	0	0	54	0	1	0	1	53	2173	1	2	0	3	542	1	1	1	3	522	4	2	14	20	551	3	1	23	27	558	0	0	3	3	65	0.0555555555555556	0.111111111111111	0.116487455197133	0.953846153846154	0.0461538461538462	0	0	0	0	84	0	0	0.152450090744102	0	0	0.0555555555555556	3	41	149	960	0.944680137134654	1	1	0.471674913973893	0.12233088153457	Inf	0.507474069554606	0	1	1	1	0	0.603482677308181	0.889032018883545	1	1	0.568727699693672	0.1	0.466258722490609	1	51	50	0
"TCGA-AG-3582-01A-01W-0831-10"	0	0	0	0	35	0	0	1	1	34	1394	0	4	1	5	302	0	2	1	3	341	1	5	10	16	379	1	4	5	10	372	0	0	0	0	48	0	0	0.129032258064516	0	0	0	1	0	1	37	0.0285714285714286	0.0625	0.0976253298153034	0.640202702702703	0.027027027027027	0	0	17	85	666	1	1	1	0	0	Inf	0	0	1	1	1	0	0	1	1	1	0	1	1	1	35	34	0
"TCGA-AG-3583-01A-01W-0831-10"	0	0	0	0	59	0	0	2	2	57	2337	0	1	0	1	601	0	1	2	3	563	1	1	15	17	565	1	2	33	36	608	1	1	1	3	85	0.0508474576271186	0.0833333333333333	0.139802631578947	0.596078431372549	0.0352941176470588	0	0	2	2	75	0.0338983050847458	0.117647058823529	0.132743362831858	0.886274509803922	0.0266666666666667	0.0677966101694915	4	46	160	1013	0.921450382319253	1	1	0.550765051570747	0.178766847320925	Inf	0.5865	3.665625	0.255368443945051	0.591812635073957	1	6.31467879708456	0.458203125	0.96631423603853	1	1	0.422302465956329	0.523809523809524	1	1	55	53	0
"TCGA-AG-3584-01A-01W-0831-10"	0	0	0	0	33	0	1	0	1	32	1312	0	2	1	3	316	0	0	1	1	347	1	3	7	11	307	0	2	15	17	342	0	0	0	0	57	0	0	0.166666666666667	0	0	0	0	0	0	48	0	0	0.156351791530945	0	0	0	0	23	105	544	1	1	1	0	0	Inf	0	0	1	1	1	0	0	1	1	1	0	1	1	1	33	32	0
"TCGA-AG-3586-01A-02W-0831-10"	0	0	0	0	66	2	1	0	1	63	2583	1	6	3	10	653	5	7	3	15	621	2	6	14	22	650	2	3	11	16	659	0	2	1	3	107	0.0454545454545455	0.1875	0.16236722306525	1.15478971962617	0.0280373831775701	0	2	1	3	101	0.0454545454545455	0.136363636363636	0.155384615384615	0.877587758775878	0.0297029702970297	0.0303030303030303	2	27	208	1101	0.956333194677374	1	1	0.392291051585903	0.0659830176529992	Inf	0.434018567639257	0	1	1	1	0	0.503461538461539	0.923590462534875	1	1	0.460493329250003	0.454545454545454	1	1	64	61	0
"TCGA-AG-3587-01A-01W-0831-10"	0	0	0	0	66	1	1	0	1	64	2624	1	4	3	8	667	0	4	0	4	629	0	6	16	22	644	2	4	24	30	684	1	0	0	1	95	0.0151515151515152	0.0333333333333333	0.138888888888889	0.24	0.0105263157894737	0	2	0	2	94	0.0303030303030303	0.0909090909090909	0.145962732919255	0.622823984526112	0.0212765957446809	0.0151515151515152	1	41	189	1139	0.998294509257684	1	1	0.147093438296597	0.00729645688180887	Inf	0.167296548248929	3.51322751322751	0.26539825862625	0.591812635073957	1	6.01323741558411	0	1	1	1	0	1	1	1	65	63	0
"TCGA-AG-3593-01A-01W-0831-10"	0	0	0	0	75	1	0	0	0	74	3034	5	4	0	9	780	4	7	1	12	808	7	3	19	29	742	3	6	15	24	704	1	1	0	2	132	0.0266666666666667	0.0833333333333333	0.1875	0.444444444444444	0.0151515151515152	1	2	1	4	107	0.0533333333333333	0.137931034482759	0.144204851752022	0.956493715758943	0.0373831775700935	0.04	3	41	239	1207	0.982699648172881	1	1	0.369701831549227	0.0962834793194978	Inf	0.412514263978699	1.21004184100418	0.512072914268421	0.844228318118208	1	1.26233371281309	0.177947329559439	0.997735149956762	1	1	0.153140190257088	1	1	1	72	71	0
"TCGA-AG-3594-01A-02W-0831-10"	0	0	0	0	42	0	0	2	2	40	1640	0	2	1	3	440	0	3	0	3	358	0	2	13	15	414	0	4	15	19	428	0	1	0	1	55	0.0238095238095238	0.0526315789473684	0.128504672897196	0.409569377990431	0.0181818181818182	0	0	0	0	65	0	0	0.157004830917874	0	0	0	0	28	120	722	1	1	1	0	0	Inf	0	NA	1	1	1	0	0	1	1	1	0	1	1	1	42	40	0
"TCGA-AG-3598-01A-01W-0833-10"	0	0	0	0	72	0	0	0	0	72	2952	3	4	5	12	709	1	1	0	2	677	2	6	14	22	771	4	6	26	36	795	1	1	0	2	111	0.0277777777777778	0.0555555555555556	0.139622641509434	0.397897897897898	0.018018018018018	1	1	0	2	92	0.0277777777777778	0.0909090909090909	0.119325551232166	0.761857707509881	0.0217391304347826	0.0277777777777778	2	44	203	1363	0.986189962852864	1	1	0.305341467140413	0.0522826323630782	Inf	0.335403726708075	2.57142857142857	0.178267032320271	0.505780882397048	1	3.35335730804571	0	1	1	1	0	0.428571428571429	1	1	70	70	0
"TCGA-AG-3599-01A-02W-0833-10"	0	0	0	0	67	0	1	0	1	66	2706	1	2	0	3	634	1	5	0	6	663	3	2	21	26	709	0	7	24	31	700	0	0	0	0	94	0	0	0.134285714285714	0	0	0	0	0	0	93	0	0	0.131170662905501	0	0	0	0	48	187	1222	1	1	1	0	0	Inf	0	0	1	1	1	0	0	1	1	1	0	1	1	1	67	66	0
"TCGA-AG-3600-01A-01W-0833-10"	0	0	0	0	95	0	2	1	3	92	3772	0	10	1	11	985	2	6	8	16	968	8	6	26	40	911	4	6	15	25	908	2	0	0	2	151	0.0210526315789474	0.08	0.166299559471366	0.481059602649007	0.0132450331125828	0	1	2	3	135	0.0315789473684211	0.075	0.148188803512623	0.506111111111111	0.0222222222222222	0.0421052631578947	4	49	286	1533	0.974637435920293	1	1	0.437705228077665	0.143177954078743	Inf	0.480010555482254	1.06002331002331	0.585176541892246	0.915276129626333	1	1.07200298278221	0.310250724884871	0.991894545185102	1	1	0.275000778078239	1	1	1	91	88	0
"TCGA-AG-3601-01A-01W-0833-10"	0	0	0	0	107	0	0	0	0	107	4387	1	10	9	20	1187	4	5	4	13	1073	6	9	20	35	1078	3	10	26	39	1049	0	2	6	8	151	0.0747663551401869	0.205128205128205	0.143946615824595	1.42502971642044	0.0529801324503311	2	2	1	5	155	0.0467289719626168	0.142857142857143	0.14378478664193	0.993548387096774	0.032258064516129	0.0841121495327103	9	46	306	1821	0.39770693644189	1	1	1.16420921784854	0.569642809741127	Inf	1.13743315508021	1.54466230936819	0.380461721883903	0.71224431759644	1	1.69976963411769	1.057757885763	0.501639333975813	1	1	1.06810760010109	0.0968421052631578	0.466258722490609	1	98	98	0
"TCGA-AG-3602-01A-02W-0833-10"	0	0	0	0	47	0	0	0	0	47	1927	0	2	0	2	435	1	1	2	4	453	0	2	13	15	538	4	2	20	26	501	2	0	1	3	65	0.0638297872340425	0.115384615384615	0.129740518962076	0.889349112426036	0.0461538461538462	0	1	1	2	55	0.0425531914893617	0.133333333333333	0.102230483271375	1.30424242424242	0.0363636363636364	0.0851063829787234	4	33	120	919	0.634328559473082	1	1	0.928333933677251	0.295946229556391	Inf	0.936036036036036	4.32916666666667	0.0695089645240409	0.302860488283321	1	7.63081579814389	0.524747474747475	0.906327691656403	1	1	0.494338177872082	1	1	1	43	43	0
"TCGA-AG-3605-01A-01W-0833-10"	0	0	0	0	60	0	0	0	0	60	2460	1	3	0	4	623	1	2	3	6	604	2	6	14	22	615	2	4	22	28	618	1	1	2	4	86	0.0666666666666667	0.142857142857143	0.13915857605178	1.0265780730897	0.0465116279069767	1	3	0	4	79	0.0666666666666667	0.181818181818182	0.128455284552846	1.41542002301496	0.0506329113924051	0.0666666666666667	4	36	165	1068	0.800300694072482	1	1	0.719358839173359	0.23123605119834	Inf	0.747272727272727	3.73636363636364	0.0903759653304243	0.355673153881025	1	6.45628235345358	0.415151515151515	0.96177195405825	1	1	0.38095329791661	1	1	1	56	56	0
"TCGA-AG-3608-01A-01W-0833-10"	0	0	0	0	57	0	0	0	0	57	2337	0	2	0	2	603	0	4	0	4	519	1	4	21	26	595	2	5	18	25	620	0	0	0	0	71	0	0	0.114516129032258	0	0	1	1	0	2	81	0.0350877192982456	0.0769230769230769	0.136134453781513	0.565052231718899	0.0246913580246914	0.0175438596491228	1	41	152	1063	0.99610599631091	1	1	0.17070013831812	0.00852160014611592	Inf	0.19031954887218	2.66447368421053	0.331728317230046	0.652755721001058	1	3.49102654455274	0	1	1	1	0	1	1	1	56	56	0
"TCGA-AG-3609-01A-02W-0833-10"	0	0	0	0	90	1	0	0	0	89	3649	6	6	3	15	907	5	2	1	8	923	4	4	19	27	850	7	8	24	39	969	2	0	5	7	138	0.0777777777777778	0.179487179487179	0.142414860681115	1.2603121516165	0.0507246376811594	1	1	3	5	123	0.0555555555555556	0.185185185185185	0.144705882352941	1.27973501957242	0.040650406504065	0.122222222222222	11	43	261	1558	0.148846187564772	1	1	1.52664282668675	0.794005127752445	Inf	1.41968213424152	1.90073145245559	0.203525136636463	0.543490013460123	1	2.23722641967459	1.29662300632629	0.274669159675628	1	1	1.36416795898325	0.0995327192661963	0.466258722490609	1	79	78	0
"TCGA-AG-3611-01A-01W-0833-10"	0	0	0	0	51	0	0	0	0	51	2091	0	2	3	5	495	1	5	0	6	536	1	3	15	19	548	1	0	20	21	512	0	0	1	1	70	0.0196078431372549	0.0476190476190476	0.13671875	0.348299319727891	0.0142857142857143	0	0	0	0	71	0	0	0.12956204379562	0	0	0.0196078431372549	1	36	141	919	0.994600981207592	1	1	0.181203670599672	0.00900962010943809	Inf	0.203181905309565	0	1	1	1	0	0.214792299898683	0.992875075370347	1	1	0.191860296300339	1	1	1	50	50	0
"TCGA-AG-3612-01A-01W-0833-10"	0	0	1	1	72	0	0	0	0	72	2952	3	1	3	7	742	5	4	2	11	727	3	6	9	18	705	2	9	25	36	778	2	2	2	6	121	0.0833333333333333	0.166666666666667	0.155526992287918	1.07162534435262	0.0495867768595041	2	0	2	4	101	0.0555555555555556	0.222222222222222	0.143262411347518	1.55115511551155	0.0396039603960396	0.111111111111111	8	31	222	1261	0.22613510257058	1	1	1.46543334380954	0.667964915650106	Inf	1.37029337029337	5.34414414414414	0.00228979683609796	0.0465592023339919	0.279355214003951	22.6379534256919	0.785903550609433	0.769709367899175	1	1	0.757484484172543	1	1	1	64	64	0
"TCGA-AG-3726-01A-02W-0899-10"	0	0	0	0	132	0	0	3	3	109	4469	4	5	2	11	1040	3	4	2	9	1025	5	9	31	45	1184	4	8	32	44	1220	1	3	0	4	137	0.0303030303030303	0.0909090909090909	0.112295081967213	0.809555408095554	0.0291970802919708	0	2	1	3	151	0.0227272727272727	0.0666666666666667	0.127533783783784	0.522737306843267	0.0198675496688742	0.0151515151515152	2	70	288	2116	0.998796732180341	1	1	0.209996134250832	0.0364525753915252	Inf	0.231867283950617	0.927469135802469	0.68341459128014	0.963105618837561	1	0.918423741415871	0.132495590828924	0.999649626824378	1	1	0.118551964757696	1	1	1	130	107	0
"TCGA-AG-3727-01A-01W-0899-10"	0	0	0	0	81	0	3	0	3	78	3198	0	2	2	4	797	4	2	4	10	729	0	5	20	25	844	1	4	34	39	828	1	2	1	4	122	0.0493827160493827	0.102564102564103	0.147342995169082	0.69609079445145	0.0327868852459016	0	0	2	2	112	0.0246913580246914	0.08	0.132701421800948	0.602857142857143	0.0178571428571429	0.0493827160493827	4	51	234	1438	0.957909295274051	1	1	0.482144993627464	0.157717694141611	Inf	0.51965811965812	7.14529914529915	0.140466228332337	0.439407175808849	1	Inf	0.39696106362773	0.985377793454174	1	1	0.361636315979205	0.545454545454546	1	1	77	74	0
"TCGA-AG-3731-01A-11D-1733-10"	0	0	0	0	211	0	1	8	9	202	8282	5	40	1	46	1944	1	29	1	31	2197	5	7	52	64	2060	9	7	45	61	2081	7	2	2	11	317	0.0521327014218009	0.180327868852459	0.152330610283518	1.1837927289652	0.0347003154574132	5	0	0	5	299	0.023696682464455	0.078125	0.145145631067961	0.538252508361204	0.0167224080267559	0.0663507109004739	14	97	616	3525	0.784257319643656	1	1	0.825949036830192	0.480574143344095	Inf	0.847870597870598	5.76205936920223	8.8005321593423e-09	1.07366492343976e-06	1.07366492343976e-06	34.2653481708913	0.138606239121703	0.999996589411097	1	1	0.120500918893341	0.000965052278614514	0.0196227296651618	0.117736377990971	197	188	0
"TCGA-AG-3732-01A-11D-1657-10"	0	0	0	0	168	2	4	11	15	151	6191	5	34	1	40	1474	0	39	0	39	1623	2	6	31	39	1572	2	3	28	33	1522	0	2	3	5	221	0.0297619047619048	0.151515151515152	0.145203679369251	1.04346633758398	0.0226244343891403	0	0	2	2	207	0.0119047619047619	0.0512820512820513	0.131679389312977	0.389446302489781	0.00966183574879227	0.0297619047619048	5	58	428	2666	0.946497107853878	1	1	0.53706692114953	0.203512575915346	Inf	0.573727933541018	0	1	1	1	0	0.612624742594646	0.92366661802561	1	1	0.576841017804143	0.020979020979021	0.170629370629371	1	163	146	0
"TCGA-AG-3742-01A-11D-1657-10"	0	0	0	0	221	0	7	3	10	209	8569	3	29	1	33	1977	2	38	2	42	2156	3	9	53	65	2226	4	9	56	69	2210	2	3	4	9	313	0.0407239819004525	0.130434782608696	0.141628959276018	0.920961244617308	0.0287539936102236	0	3	2	5	303	0.0226244343891403	0.0769230769230769	0.136118598382749	0.565118050266565	0.0165016501650165	0.0361990950226244	8	108	616	3820	0.993479784833926	1	1	0.459417375437627	0.222462562259943	Inf	0.496641289744738	2.05751391465677	0.253043500242957	0.591812635073957	1	2.47982598541909	0.39640176337424	0.99840788515762	1	1	0.361296085989441	0.208695652173913	0.66867542651632	1	213	201	0
"TCGA-AG-3878-01A-02W-0899-10"	0	0	0	0	80	0	2	1	3	76	3116	2	2	1	5	793	1	3	3	7	766	0	6	20	26	745	2	7	29	38	812	1	1	0	2	113	0.025	0.0526315789473684	0.139162561576355	0.378202142524453	0.0176991150442478	0	1	0	1	119	0.0125	0.0384615384615385	0.159731543624161	0.240788623141564	0.00840336134453781	0.0125	1	50	232	1325	0.999702740037482	1	1	0.114298585363166	0.00569394316655243	Inf	0.131592292089249	3.35560344827586	0.276654417062384	0.591812635073957	1	5.7011441849014	0	1	1	1	0	1	1	1	79	75	0
"TCGA-AG-3881-01A-01W-0899-10"	0	0	0	0	96	0	0	2	2	93	3813	3	4	2	9	915	4	5	2	11	859	2	8	30	40	1035	4	5	24	33	1004	2	1	3	6	125	0.0625	0.181818181818182	0.124501992031873	1.46036363636364	0.048	0	2	0	2	120	0.0208333333333333	0.05	0.115942028985507	0.43125	0.0166666666666667	0.0520833333333333	5	55	245	1794	0.860388430233658	1	1	0.665789278396022	0.250902374460443	Inf	0.693537414965986	2.77414965986395	0.157110172666406	0.46749856256833	1	3.6576775613614	0.462358276643991	0.964112215827251	1	1	0.430858835512604	1	1	1	91	88	0
"TCGA-AG-3882-01A-01W-0899-10"	0	0	0	0	61	0	2	0	2	58	2378	0	3	0	3	608	2	1	1	4	534	1	5	23	29	604	1	5	16	22	632	0	1	2	3	79	0.0491803278688525	0.136363636363636	0.125	1.09090909090909	0.0379746835443038	0	0	2	2	84	0.0327868852459016	0.0689655172413793	0.139072847682119	0.495894909688013	0.0238095238095238	0.0655737704918033	4	37	163	1073	0.806321391262339	1	1	0.711825653836267	0.229075844562653	Inf	0.739787520574592	0	1	1	1	0	0.77772534214252	0.773839251435452	1	1	0.752475156564089	0.0476190476190476	0.29047619047619	1	57	54	0
"TCGA-AG-3883-01A-02W-0899-10"	0	0	0	0	125	0	0	3	3	122	5002	3	3	2	8	1178	2	4	2	8	1241	1	15	37	53	1341	4	7	42	53	1242	3	0	1	4	168	0.032	0.0754716981132075	0.135265700483092	0.557951482479784	0.0238095238095238	0	8	1	9	178	0.072	0.169811320754717	0.132736763609247	1.27930888276447	0.050561797752809	0.04	5	79	346	2237	0.990582326038399	1	1	0.409295898162432	0.156299592338998	Inf	0.444364161849711	4.47919075144509	0.0197152577133511	0.171804388644917	1	9.68237970611207	0.188995390356333	0.999826326901871	1	1	0.16799072207806	1	1	1	120	117	0
"TCGA-AG-3885-01A-01W-0899-10"	0	0	2	2	193	4	2	6	8	180	7380	1	34	2	37	1730	4	41	6	51	1703	3	5	38	46	1926	3	7	36	46	2021	0	1	5	6	243	0.0310880829015544	0.130434782608696	0.120237506185057	1.08480944712829	0.0246913580246914	0	2	1	3	251	0.0155440414507772	0.0652173913043478	0.130321910695742	0.500433050407067	0.0119521912350598	0.0310880829015544	6	74	494	3453	0.944153041379091	1	1	0.566812891751423	0.238633396699569	Inf	0.599240890688259	0	1	1	1	0	0.647827989933253	0.91289464632117	1	1	0.616816956470634	0.0090497737556561	0.0920060331825037	1	187	174	0
"TCGA-AG-3887-01A-01W-1073-09"	0	0	0	0	76	0	2	2	4	72	2952	2	4	1	7	709	3	5	0	8	703	2	5	26	33	722	2	7	15	24	818	1	0	1	2	113	0.0263157894736842	0.0833333333333333	0.138141809290954	0.603244837758112	0.0176991150442478	1	1	1	3	91	0.0394736842105263	0.0909090909090909	0.126038781163435	0.721278721278721	0.032967032967033	0.0526315789473684	4	41	204	1336	0.862481973734597	1	1	0.639084200046394	0.207079308111785	Inf	0.671023965141612	3.77450980392157	0.0885215887369903	0.355673153881025	1	6.53551110699707	0.368244858919177	0.977882975604599	1	1	0.336003536109525	1	1	1	72	68	0
"TCGA-AG-3890-01A-01W-1073-09"	0	0	0	0	77	0	1	1	2	74	3034	1	4	5	10	785	4	4	2	10	807	3	9	19	31	683	7	4	12	23	759	4	0	1	5	125	0.0649350649350649	0.217391304347826	0.164690382081686	1.32	0.04	3	2	2	7	100	0.0909090909090909	0.225806451612903	0.146412884333821	1.54225806451613	0.07	0.12987012987013	10	31	225	1217	0.100425880024363	1	1	1.74402368743155	0.85958266399154	Inf	1.56314363143631	4.48622222222222	0.000190548021900623	0.00774895289062533	0.023246858671876	12.5846913052327	0.620215053763441	0.881365965798569	1	1	0.579705042991907	0.213756898640463	0.66867542651632	1	67	64	0
"TCGA-AG-3892-01A-01W-1073-09"	0	0	2	2	2187	0	4	1	5	2180	89380	4	86	167	257	25220	9	93	183	285	25066	3	405	438	846	19524	2	378	412	792	19570	1	332	37	370	3635	0.169181527206219	0.467171717171717	0.185743484925907	2.51514456810193	0.101788170563961	1	347	34	382	3661	0.17466849565615	0.451536643026005	0.187512804753124	2.4080309801802	0.104343075662387	0.0333790580704161	73	782	7296	31798	1	1	1	0.406847833984546	0.328447535449301	Inf	0.457490445778188	2.14331140350877	0.235632825559681	0.576289395633781	1	2.90534939629835	0.447573851909185	1	1	1	0.397225499221025	1.10909463699096e-19	6.76547728564486e-18	1.35309545712897e-17	2114	2107	0
"TCGA-AG-3893-01A-01W-1073-09"	0	0	0	0	115	0	0	1	1	113	4633	4	4	4	12	1101	1	5	2	8	1096	5	8	32	45	1203	5	13	30	48	1233	2	5	3	10	163	0.0869565217391304	0.208333333333333	0.132197891321979	1.57592024539877	0.0613496932515337	1	1	0	2	171	0.0173913043478261	0.0444444444444444	0.14214463840399	0.312670565302144	0.0116959064327485	0.0521739130434783	6	66	334	2102	0.939869994592088	1	1	0.572235177669662	0.239518447999442	Inf	0.607784431137725	2.18802395209581	0.148730059187073	0.453626680520573	1	2.6957391215535	0.352907089047711	0.993392438207107	1	1	0.320100848947872	1	1	1	109	107	0
"TCGA-AG-3894-01A-01W-1073-09"	0	0	0	0	104	0	2	2	4	99	4059	4	2	5	11	938	3	3	2	8	959	3	8	27	38	1073	8	3	31	42	1089	0	1	0	1	133	0.00961538461538462	0.0238095238095238	0.122130394857668	0.194951664876477	0.0075187969924812	0	2	0	2	131	0.0192307692307692	0.0526315789473684	0.122087604846226	0.431096826034552	0.0152671755725191	0	0	69	264	1898	1	1	1	0	0	Inf	0	0	1	1	1	0	0	1	1	1	0	1	1	1	104	99	0
"TCGA-AG-3896-01A-01W-1073-09"	0	0	0	0	106	0	1	0	1	105	4305	5	5	3	13	1046	1	4	1	6	992	3	7	36	46	1138	3	2	35	40	1129	1	1	1	3	150	0.0283018867924528	0.075	0.132860938883968	0.5645	0.02	0	3	2	5	157	0.0471698113207547	0.108695652173913	0.137961335676626	0.787870396012185	0.0318471337579618	0.0377358490566038	4	73	307	1960	0.994611801433108	1	1	0.349935553004531	0.115846098950399	Inf	0.383603367316722	1.23072747014115	0.583007056697137	0.915276129626333	1	1.27672179077969	0.312015414965362	0.997413431830779	1	1	0.281760386416265	0.569230769230769	1	1	102	101	0
"TCGA-AG-3898-01A-01W-1073-09"	0	0	0	0	110	0	1	0	1	108	4428	5	4	3	12	1117	3	3	2	8	1095	1	7	34	42	1115	3	6	37	46	1101	1	0	2	3	143	0.0272727272727273	0.0652173913043478	0.129881925522253	0.502128306476132	0.020979020979021	0	2	0	2	148	0.0181818181818182	0.0476190476190476	0.132735426008969	0.358751608751609	0.0135135135135135	0.0272727272727273	3	72	291	1925	0.997841788687788	1	1	0.275727960161342	0.0730856919143932	Inf	0.304604810996564	1.90378006872852	0.431358896066753	0.76269254087165	1	2.20401032433388	0.21451043027927	0.999405685927443	1	1	0.191820109372351	1	1	1	107	105	0
"TCGA-AG-3901-01A-01W-1073-09"	0	0	0	0	66	0	0	0	0	66	2706	0	2	0	2	629	2	4	2	8	684	2	4	18	24	740	1	2	29	32	653	0	0	0	0	81	0	0	0.124042879019908	0	0	1	1	0	2	85	0.0303030303030303	0.0833333333333333	0.114864864864865	0.725490196078431	0.0235294117647059	0.0151515151515152	1	49	166	1227	0.998095610752257	1	1	0.150949872309468	0.00757284256879525	Inf	0.167831325301205	2.79718875502008	0.317861734203103	0.646318859546309	1	3.69040186955357	0	1	1	1	0	1	1	1	65	65	0
"TCGA-AG-3902-01A-01W-1073-09"	0	0	0	0	135	0	0	0	0	134	5494	9	10	7	26	1430	6	6	9	21	1405	7	9	32	48	1321	8	5	26	39	1338	2	2	3	7	207	0.0518518518518519	0.179487179487179	0.154708520179372	1.16016350798959	0.0338164251207729	3	2	2	7	190	0.0518518518518519	0.145833333333333	0.143830431491294	1.01392543859649	0.0368421052631579	0.0740740740740741	10	63	397	2262	0.665574083173541	1	1	0.90446081351694	0.466681190490759	Inf	0.917497670887823	2.23257766582704	0.061676061620389	0.289403058372595	1	2.84732966602793	0.577390775644923	0.945503596958035	1	1	0.537623713907087	1	1	1	125	124	0
"TCGA-AG-3909-01A-01W-1073-09"	0	0	1	1	85	0	0	2	2	83	3403	1	4	0	5	754	1	5	1	7	846	1	10	24	35	861	3	3	30	36	942	0	0	1	1	118	0.0117647058823529	0.0277777777777778	0.125265392781316	0.221751412429379	0.00847457627118644	1	0	1	2	94	0.0235294117647059	0.0571428571428571	0.10917537746806	0.523404255319149	0.0212765957446809	0.0352941176470588	3	55	212	1591	0.972033984889495	1	1	0.40948932360754	0.107595745096317	Inf	0.439899154196487	2.12617924528302	0.394759895025724	0.718816525270721	1	2.49967139187237	0.314989517819707	0.989965882545717	1	1	0.288765663860446	1	1	1	82	80	0
"TCGA-AG-3999-01A-01W-1073-09"	0	0	0	0	97	0	1	0	1	94	3854	1	2	5	8	867	1	2	3	6	896	1	4	32	37	1003	3	4	36	43	1088	1	0	0	1	125	0.0103092783505155	0.0232558139534884	0.114889705882353	0.202418604651163	0.008	1	1	2	4	116	0.0412371134020619	0.108108108108108	0.115653040877368	0.934762348555452	0.0344827586206897	0.0412371134020619	4	68	241	1850	0.971256779825854	1	1	0.451673146917497	0.149068319499254	Inf	0.482019363762102	4.33817427385892	0.0686120765748946	0.302860488283321	1	7.66247955838648	0.255186721991701	0.997420588776692	1	1	0.232709273498493	1	1	1	93	90	0
"TCGA-AG-4001-01A-02W-1073-09"	0	0	0	0	124	0	1	2	3	120	4920	2	6	1	9	1134	2	3	1	6	1237	4	7	47	58	1238	4	4	39	47	1311	1	1	3	5	164	0.0403225806451613	0.106382978723404	0.12509534706331	0.850415153087701	0.0304878048780488	1	2	1	4	168	0.032258064516129	0.0689655172413793	0.135702746365105	0.508210180623974	0.0238095238095238	0.0483870967741935	6	88	332	2217	0.986575668251517	1	1	0.455399346173571	0.192095701750374	Inf	0.490066649577032	1.91942771084337	0.281353547822045	0.591812635073957	1	2.22498651323768	0.357102829924349	0.997047419557552	1	1	0.325834447082321	0.619909502262444	1	1	118	114	0
"TCGA-AG-4005-01A-01W-1073-09"	0	0	0	0	120	0	1	3	4	115	4715	4	7	2	13	1141	5	6	2	13	1090	3	8	38	49	1194	4	6	30	40	1290	2	1	1	4	153	0.0333333333333333	0.1	0.118604651162791	0.843137254901961	0.0261437908496732	1	3	0	4	175	0.0333333333333333	0.0816326530612245	0.146566164154104	0.556967930029155	0.0228571428571429	0.0333333333333333	4	71	328	2156	0.991839768290747	1	1	0.370419471020604	0.122597939040604	Inf	0.40390243902439	3.24564459930314	0.0539739029651821	0.288070888293309	1	4.92492196787854	0.111370157819225	0.999926630797137	1	1	0.0981473102596725	0.569230769230769	1	1	116	111	0
"TCGA-AG-4007-01A-01W-1073-09"	0	0	0	0	165	0	4	0	4	161	6601	4	5	4	13	1467	4	8	5	17	1690	3	9	48	60	1754	3	12	56	71	1690	3	5	3	11	215	0.0666666666666667	0.154929577464789	0.127218934911243	1.21781853914183	0.0511627906976744	1	2	3	6	214	0.0363636363636364	0.1	0.122006841505131	0.819626168224299	0.0280373831775701	0.0606060606060606	10	100	429	3015	0.88941835043204	1	1	0.702859445545757	0.36848779928913	Inf	0.729815638906548	5.35198135198135	0.00298246158698461	0.0519800448017318	0.363860313612122	14.0358061386259	0.463152232383002	0.991730003757259	1	1	0.430358341580735	0.707985303535915	1	1	155	151	0
"TCGA-AG-4008-01A-01W-1073-09"	0	0	0	0	77	0	1	1	2	74	3034	0	3	2	5	739	3	6	2	11	683	0	3	19	22	814	1	8	27	36	798	1	1	1	3	94	0.038961038961039	0.0833333333333333	0.117794486215539	0.707446808510638	0.0319148936170213	0	1	0	1	109	0.012987012987013	0.0454545454545455	0.133906633906634	0.339449541284404	0.00917431192660551	0.025974025974026	2	45	203	1409	0.985495035116152	1	1	0.308626764252734	0.0528708002688778	Inf	0.337910072319463	7.94088669950739	0.126472411655301	0.439407175808849	1	Inf	0.172627971728422	0.997820905846029	1	1	0.154331949988348	1	1	1	75	72	0
"TCGA-AG-4015-01A-01W-1073-09"	0	0	0	0	97	0	0	1	1	95	3895	4	4	1	9	961	2	6	4	12	956	0	10	26	36	1012	2	5	31	38	966	0	1	4	5	129	0.0515463917525773	0.131578947368421	0.133540372670807	0.98531211750306	0.0387596899224806	0	3	2	5	141	0.0515463917525773	0.138888888888889	0.139328063241107	0.996847911741529	0.0354609929078014	0.0618556701030928	6	53	270	1708	0.831831786767575	1	1	0.716248022952755	0.297012221202784	Inf	0.745009416195857	0	1	1	1	0	0.771150097465887	0.80655676136357	1	1	0.744324809301847	0.0108359133126935	0.101690878780662	1	91	89	0
"TCGA-AG-A002-01A-01W-A00K-09"	0	0	0	0	12312	1	25	17	42	12255	502455	47	351	439	837	135838	53	315	474	842	137352	9	2538	2746	5293	114292	16	2518	2749	5283	114973	0	2013	204	2217	20328	0.180068226120858	0.419647927314026	0.176806728536265	2.37348392104858	0.109061393152302	0	2038	202	2240	20300	0.181936322287199	0.423200453429057	0.177615231162286	2.38268109474452	0.110344827586207	0.0329759584145549	406	5114	40628	188637	1	1	1	0.368606982833841	0.337793995240377	Inf	0.415048904303878	0	1	1	1	0	0.41693720687123	1	1	1	0.370417763853851	7.67023552891641e-127	9.35768734527802e-125	9.35768734527802e-125	11906	11849	0
"TCGA-AG-A008-01A-01W-A005-10"	0	0	0	0	49	0	0	0	0	49	2009	1	1	0	2	500	1	3	2	6	477	3	1	17	21	514	0	3	17	20	518	0	0	1	1	72	0.0204081632653061	0.05	0.138996138996139	0.359722222222222	0.0138888888888889	2	1	2	5	79	0.102040816326531	0.238095238095238	0.153696498054475	1.54912597950573	0.0632911392405063	0.102040816326531	5	32	151	881	0.648200594436247	1	1	0.911737753034835	0.333408948996669	Inf	0.923572579201718	4.55629139072848	0.058839134399482	0.288070888293309	1	11.6222008959629	0.603038566419945	0.890952607433482	1	1	0.564874917593252	1	1	1	44	44	0
"TCGA-AG-A00C-01A-01W-A005-10"	0	0	0	0	69	0	0	0	0	69	2829	1	1	1	3	688	1	4	3	8	724	4	10	21	35	705	3	8	12	23	712	0	2	0	2	95	0.0289855072463768	0.0869565217391304	0.133426966292135	0.651716247139588	0.0210526315789474	1	3	0	4	95	0.0579710144927536	0.114285714285714	0.134751773049645	0.84812030075188	0.0421052631578947	0.0144927536231884	1	39	190	1227	0.996664258744523	1	1	0.165696100024196	0.0082743315525203	Inf	0.186447368421053	1.06541353383459	0.63593726546675	0.934751161288476	1	1.07628093890234	0	1	1	1	0	1	1	1	68	68	0
"TCGA-AG-A00H-01A-01W-A00E-09"	0	0	0	0	75	0	0	0	0	74	3034	3	4	1	8	762	1	3	0	4	773	3	4	23	30	737	5	7	20	32	762	2	2	0	4	115	0.0533333333333333	0.125	0.150918635170604	0.828260869565217	0.0347826086956522	2	1	2	5	127	0.0666666666666667	0.166666666666667	0.172320217096336	0.967191601049869	0.0393700787401575	0.08	6	45	242	1257	0.850527610233941	1	1	0.692710245025032	0.284924693817179	Inf	0.728731161886242	3.09710743801653	0.0281931594133101	0.192630465491309	1	5.18576576299563	0.28810301748991	0.994925813579375	1	1	0.253517575343961	0.619909502262444	1	1	69	68	0
"TCGA-AG-A00Y-01A-02W-A005-10"	0	0	1	1	149	5	20	13	33	111	4551	4	11	2	17	1116	3	13	4	20	1087	4	6	30	40	1138	4	8	22	34	1210	0	2	3	5	166	0.0335570469798658	0.147058823529412	0.137190082644628	1.07193479801559	0.0301204819277108	1	1	11	13	166	0.087248322147651	0.325	0.145869947275923	2.22801204819277	0.0783132530120482	0.100671140939597	15	45	332	2016	0.0196371015188657	1	1	2.02339574043161	1.15155736752909	Inf	1.76807228915663	0.884036144578313	0.705073895194771	0.977488809247296	1	0.86753977305503	1.90407784986098	0.0125185617712838	1	1	2.23619220642664	2.0077937570804e-05	0.000816502794546029	0.00244950838363809	134	96	0
"TCGA-AG-A011-01A-01W-A00K-09"	0	0	0	0	111	0	0	0	0	111	4551	4	3	1	8	1071	9	5	3	17	1138	3	10	30	43	1174	3	12	28	43	1168	1	3	3	7	161	0.0630630630630631	0.162790697674419	0.137842465753425	1.18099089989889	0.0434782608695652	3	1	2	6	148	0.0540540540540541	0.13953488372093	0.126064735945486	1.1068510370836	0.0405405405405405	0.0810810810810811	9	55	309	2033	0.476301635173483	1	1	1.07659772275798	0.531368212099049	Inf	1.06583737864078	5.05285868392664	0.00372960476782158	0.0568278517291138	0.455011781674233	13.1325706474566	0.653386898783618	0.894119396728624	1	1	0.620792848527303	1	1	1	102	102	0
"TCGA-AG-A014-01A-02W-A00K-09"	0	0	1	1	122	2	5	3	8	100	4100	1	8	1	10	990	1	6	2	9	1035	5	10	29	44	1021	7	5	25	37	1054	0	1	3	4	142	0.0327868852459016	0.108108108108108	0.134724857685009	0.802436239055957	0.028169014084507	1	3	3	7	140	0.0573770491803279	0.159090909090909	0.137120470127326	1.16022727272727	0.05	0.0573770491803279	7	59	282	1793	0.808588633749433	1	1	0.754448293886224	0.337549261	Inf	0.780410487857296	0.613179669030733	0.826856620434388	1	1	0.578139454353181	0.817572892040977	0.759383872639884	1	1	0.794849055758165	0.0634674922600621	0.351956093442163	1	115	93	0
"TCGA-AG-A015-01A-01W-A005-10"	0	0	0	0	64	0	0	0	0	64	2624	2	3	2	7	709	2	3	4	9	665	2	5	17	24	615	2	10	12	24	635	1	2	0	3	95	0.046875	0.125	0.149606299212598	0.835526315789474	0.0315789473684211	1	2	1	4	109	0.0625	0.166666666666667	0.177235772357724	0.940366972477064	0.036697247706422	0.046875	3	30	204	1046	0.92179396382206	1	1	0.512963438483561	0.131653834559686	Inf	0.557040998217469	3.06372549019608	0.128356884779674	0.439407175808849	1	5.11753931610744	0.211291413116971	0.994068999096758	1	1	0.183260250863381	1	1	1	61	61	0
"TCGA-AG-A016-01A-01W-A005-10"	0	0	0	0	57	0	0	0	0	57	2337	1	2	1	4	577	1	1	1	3	551	1	1	20	22	619	1	4	23	28	590	0	1	2	3	90	0.0526315789473684	0.107142857142857	0.152542372881356	0.702380952380952	0.0333333333333333	1	0	0	1	90	0.0175438596491228	0.0454545454545455	0.145395799676898	0.312626262626263	0.0111111111111111	0.0526315789473684	3	42	180	1029	0.971041905125348	1	1	0.40854585018853	0.10624817902621	Inf	0.447777777777778	3.35833333333333	0.27669230401758	0.591812635073957	1	5.70367805685392	0.312403100775194	0.991148065195521	1	1	0.279044878516805	1	1	1	54	54	0
"TCGA-AG-A01L-01A-01W-A00K-09"	0	0	0	0	74	0	1	0	1	72	2952	1	0	0	1	606	2	4	1	7	694	0	2	24	26	841	1	3	34	38	811	0	1	3	4	103	0.0540540540540541	0.105263157894737	0.127003699136868	0.828819621870209	0.0388349514563107	0	0	2	2	95	0.027027027027027	0.0769230769230769	0.112960760998811	0.680971659919028	0.0210526315789474	0.0675675675675676	5	54	198	1454	0.848587100037101	1	1	0.680081907330402	0.255589806251885	Inf	0.707070707070707	0	1	1	1	0	0.719261581330547	0.838069822912248	1	1	0.69290790092979	0.0151515151515152	0.132034632034632	1	69	67	0
"TCGA-AG-A01W-01A-21W-A096-10"	0	0	0	0	127	0	0	2	2	125	5125	1	4	6	11	1218	3	7	6	16	1281	5	9	31	45	1304	3	11	39	53	1322	1	1	3	5	173	0.0393700787401575	0.0943396226415094	0.130862329803328	0.72090740538772	0.0289017341040462	1	0	3	4	167	0.031496062992126	0.0888888888888889	0.128067484662577	0.694078509647372	0.0239520958083832	0.062992125984252	8	70	340	2286	0.805607505023731	1	1	0.768472061931825	0.366379549967294	Inf	0.792156862745098	1.93088235294118	0.278885084408864	0.591812635073957	1	2.24026917997276	0.662016806722689	0.902449278095902	1	1	0.630423534515386	0.153434800493624	0.584970176881942	1	119	117	0
"TCGA-AG-A01Y-01A-41W-A096-10"	0	0	0	0	92	0	1	2	3	89	3649	1	10	5	16	945	4	7	2	13	902	3	6	22	31	945	4	2	23	29	857	1	0	1	2	133	0.0217391304347826	0.0689655172413793	0.155192532088681	0.44438682914182	0.0150375939849624	0	1	2	3	142	0.0326086956521739	0.0967741935483871	0.15026455026455	0.644025442980463	0.0211267605633803	0.0434782608695652	4	48	275	1527	0.965613787618864	1	1	0.462878884360327	0.151269117749728	Inf	0.504055944055944	0.936103896103896	0.686804826548097	0.963105618837561	1	0.925475032516152	0.436848484848485	0.975288225159921	1	1	0.396765748402455	0.523809523809524	1	1	88	85	0
"TCGA-AG-A020-01A-21W-A096-10"	0	0	0	0	79	0	1	3	4	74	3034	1	5	3	9	743	2	2	3	7	699	1	6	19	26	767	2	6	24	32	825	0	0	0	0	101	0	0	0.122424242424242	0	0	0	3	2	5	110	0.0632911392405063	0.192307692307692	0.143415906127771	1.34090909090909	0.0454545454545455	0.0253164556962025	2	44	211	1381	0.987875152614071	1	1	0.297643767878914	0.0509883881066637	Inf	0.328044508551411	0	1	1	1	0	0.350931334729417	0.982632884100271	1	1	0.31941729858729	0.444444444444444	1	1	77	72	0
"TCGA-AG-A025-01A-01W-A00E-09"	0	0	0	0	94	0	1	3	4	87	3567	2	6	2	10	851	2	3	2	7	839	1	5	24	30	888	3	4	33	40	989	0	2	0	2	116	0.0212765957446809	0.05	0.117290192113246	0.426293103448276	0.0172413793103448	0	0	1	1	112	0.0106382978723404	0.0333333333333333	0.126126126126126	0.264285714285714	0.00892857142857143	0.0106382978723404	1	60	228	1649	0.999590283788385	1	1	0.120603840424867	0.00602872455671002	Inf	0.134958297382801	0	1	1	1	0	0.144429055093875	0.999322186230406	1	1	0.129217659961413	1	1	1	93	86	0
"TCGA-AG-A026-01A-32W-A096-10"	0	0	0	0	218	0	2	2	4	213	8733	7	17	5	29	2173	6	14	7	27	2121	18	14	48	80	2218	19	15	43	77	2221	6	1	4	11	312	0.0504587155963303	0.142857142857143	0.140477262494372	1.01694139194139	0.0352564102564103	9	3	5	17	310	0.0779816513761468	0.2125	0.139765554553652	1.52040322580645	0.0548387096774194	0.110091743119266	24	104	622	3817	0.0860286861104024	1	1	1.41602733617186	0.932826181275343	Inf	1.3381229903537	2.89323889806205	7.52762348767196e-05	0.0045918503274799	0.00918370065495979	4.18239107212018	0.705823115790961	0.904206793827041	1	1	0.67358771127432	0.176476338697089	0.633238627089555	1	194	189	0
"TCGA-AG-A02G-01A-01W-A00E-09"	0	0	0	0	51	0	1	1	2	47	1927	0	1	0	1	451	1	2	2	5	435	0	1	20	21	519	2	3	15	20	522	0	0	1	1	65	0.0196078431372549	0.05	0.124521072796935	0.401538461538462	0.0153846153846154	0	0	2	2	64	0.0392156862745098	0.0952380952380952	0.123314065510597	0.772321428571428	0.03125	0.0588235294117647	3	34	129	912	0.85231891310997	1	1	0.624035036205587	0.160379895748907	Inf	0.654305468258957	0	1	1	1	0	0.691694352159468	0.824972463287447	1	1	0.66301040821284	0.1	0.466258722490609	1	48	44	0
"TCGA-AG-A02N-01A-11W-A096-10"	0	0	0	0	1221	0	13	87	100	1121	45961	6	44	6	56	10157	11	37	8	56	10291	0	43	472	515	12782	3	44	447	494	12731	0	1	1	2	1454	0.00163800163800164	0.00404858299595142	0.114209410101327	0.0354487689968759	0.00137551581843191	0	2	1	3	1376	0.00245700245700246	0.0058252427184466	0.107651384759818	0.0541121020546399	0.00218023255813953	0.00163800163800164	2	920	2830	22683	1	1	1	0.0174334410097889	0.00306273851114094	Inf	0.0195557361090884	0	1	1	1	0	0.0196195742030245	1	1	1	0.0174904878682621	0.444444444444444	1	1	1219	1119	0
"TCGA-AG-A02X-01A-01W-A00E-09"	0	0	0	0	139	1	1	0	1	132	5412	1	6	2	9	1282	5	7	2	14	1343	4	11	45	60	1389	2	11	36	49	1398	0	2	4	6	206	0.0431654676258993	0.122448979591837	0.147353361945637	0.830988706162077	0.029126213592233	1	3	1	5	218	0.0359712230215827	0.0833333333333333	0.156947444204464	0.530963302752294	0.0229357798165138	0.0431654676258993	6	81	424	2363	0.993779671065217	1	1	0.412914547986958	0.174086141404825	Inf	0.453318152244632	1.09551886792453	0.628938956061492	0.934751161288476	1	1.11461362852092	0.405747728860936	0.996053597760246	1	1	0.366741249227239	0.148606811145511	0.584839708379108	1	133	126	0
"TCGA-AG-A032-01A-01W-A00E-09"	0	0	0	0	78	0	0	0	0	74	3034	1	2	2	5	722	0	5	1	6	710	4	5	18	27	787	1	13	22	36	815	0	1	1	2	102	0.0256410256410256	0.0555555555555556	0.125153374233129	0.443899782135076	0.0196078431372549	1	0	0	1	97	0.0128205128205128	0.037037037037037	0.123252858958069	0.300496372661321	0.0103092783505155	0.0256410256410256	2	43	199	1403	0.980429451386535	1	1	0.32806659910536	0.0561406618408928	Inf	0.357788944723618	1.61005025125628	0.485949033024713	0.823413639291875	1	1.76179637510664	0.201256281407035	0.99481712839616	1	1	0.180877942644711	1	1	1	76	72	0
"TCGA-AG-A036-01A-12W-A096-10"	0	0	0	0	150	0	0	1	1	148	6068	8	8	3	19	1456	5	12	4	21	1478	12	6	34	52	1507	7	10	39	56	1627	2	5	3	10	213	0.0666666666666667	0.178571428571429	0.130915795943454	1.3640174379611	0.0469483568075117	3	0	3	6	205	0.04	0.115384615384615	0.136031851360319	0.848217636022514	0.0292682926829268	0.0733333333333333	11	81	418	2716	0.696289951787326	1	1	0.882446962369442	0.47434283080238	Inf	0.896453089244851	1.97305464618484	0.0999242064587814	0.369416763271859	1	2.31987729725928	0.616241725109786	0.934721505880074	1	1	0.581957745458916	1	1	1	139	137	0
"TCGA-AH-6544-01A-11D-1826-10"	0	0	1	1	186	0	0	2	2	184	7544	5	17	6	28	1773	3	25	10	38	1905	0	18	40	58	1973	8	15	37	60	1893	2	2	3	7	274	0.0376344086021505	0.116666666666667	0.144743792921289	0.806021897810219	0.0255474452554745	0	3	4	7	271	0.0376344086021505	0.120689655172414	0.137354282818044	0.878674131568902	0.025830258302583	0.0483870967741935	9	76	545	3321	0.86182001491213	1	1	0.721661998807092	0.3619979802739	Inf	0.751084727468969	1.77339449541284	0.314897347493594	0.646318859546309	1	2.03076813548781	0.644870725604671	0.929313262878758	1	1	0.609423675628255	0.103188405797102	0.466258722490609	1	177	175	0
"TCGA-AH-6547-01A-11D-1826-10"	0	0	1	1	43	0	0	2	2	41	1681	0	14	1	15	452	0	13	0	13	482	0	4	2	6	348	0	2	5	7	399	0	0	1	1	74	0.0232558139534884	0.142857142857143	0.18546365914787	0.77027027027027	0.0135135135135135	0	1	0	1	67	0.0232558139534884	0.166666666666667	0.192528735632184	0.865671641791045	0.0149253731343284	0.0232558139534884	1	6	141	606	0.769412438860473	1	1	0.716600372585345	0.0314209939073685	Inf	0.756838905775076	NA	1	1	1	0	0.756838905775076	0.769412438860473	1	1	0.716600372585345	1	1	1	42	40	0
"TCGA-AH-6549-01A-11D-1826-10"	0	0	0	0	138	0	1	4	5	133	5453	3	17	3	23	1327	1	20	0	21	1359	1	15	27	43	1332	5	14	27	46	1435	3	1	2	6	233	0.0434782608695652	0.130434782608696	0.162369337979094	0.803321515208061	0.0257510729613734	0	1	2	3	197	0.0217391304347826	0.0697674418604651	0.147897897897898	0.471727068823043	0.0152284263959391	0.0507246376811594	7	53	430	2337	0.842284184388233	1	1	0.717891570697872	0.320810130129775	Inf	0.750736434108527	3.21744186046512	0.0523964252632669	0.288070888293309	1	5.42984233486594	0.476658053402239	0.975944942407709	1	1	0.434884514846105	1	1	1	131	126	0
"TCGA-AH-6643-01A-11D-1826-10"	0	0	0	0	191	0	1	2	3	185	7585	0	25	7	32	1879	3	35	11	49	1908	5	8	41	54	1929	4	9	37	50	1869	0	5	1	6	268	0.031413612565445	0.12	0.143392188336009	0.836865671641791	0.0223880597014925	0	1	2	3	283	0.0157068062827225	0.0555555555555556	0.146708138932089	0.378680800942285	0.0106007067137809	0.0157068062827225	3	84	551	3247	0.999837066108147	1	1	0.210510343254701	0.0561364739673025	Inf	0.237686964140434	0	1	1	1	0	0.265112383079715	0.999468568945881	1	1	0.235769545280703	0.205882352941176	0.66867542651632	1	188	182	0
"TCGA-AH-6644-01A-21D-1826-10"	0	0	1	1	141	0	3	4	7	134	5494	2	26	2	30	1287	3	14	0	17	1334	1	6	30	37	1333	4	9	37	50	1540	1	1	2	4	213	0.0283687943262411	0.08	0.138311688311688	0.578403755868545	0.0187793427230047	0	1	1	2	183	0.0141843971631206	0.0540540540540541	0.13728432108027	0.393738000295377	0.0109289617486339	0.0283687943262411	4	68	396	2477	0.992193360833284	1	1	0.368030737479517	0.121800211118963	Inf	0.403058361391695	1.4510101010101	0.524184993998422	0.8526742569041	1	1.56347255486954	0.324853007688829	0.996505682591856	1	1	0.293284170454522	0.545454545454546	1	1	137	130	0
"TCGA-CI-6619-01B-11D-1826-10"	1	0	0	1	145	0	0	4	4	141	5781	3	31	3	37	1474	3	27	2	32	1533	5	7	21	33	1381	4	7	28	39	1393	1	1	0	2	222	0.0137931034482759	0.0512820512820513	0.159368269921034	0.321783321783322	0.00900900900900901	1	1	1	3	203	0.0206896551724138	0.0909090909090909	0.146994931209269	0.618450515002239	0.0147783251231527	0.0206896551724138	3	55	425	2349	0.995542142090796	1	1	0.301559286845353	0.079553519115038	Inf	0.337606490872211	1.45045751633987	0.412509323251637	0.740090256422055	1	1.57885350064223	0.133205282112845	0.999693563239158	1	1	0.115189395703216	1	1	1	142	138	0
"TCGA-CI-6620-01A-11D-1826-10"	0	0	0	0	126	0	2	4	6	120	4920	2	27	0	29	1161	1	28	1	30	1247	3	0	21	24	1178	0	6	31	37	1334	0	1	2	3	194	0.0238095238095238	0.0810810810810811	0.145427286356822	0.557536918361661	0.0154639175257732	2	0	0	2	171	0.0158730158730159	0.0833333333333333	0.145161290322581	0.574074074074074	0.0116959064327485	0.0317460317460317	4	51	365	2147	0.966763240918584	1	1	0.461456937057537	0.151405394125478	Inf	0.50052303860523	4.58812785388128	0.0575618485503324	0.288070888293309	1	11.7448492495186	0.264699683877766	0.997057786345984	1	1	0.235367400263858	1	1	1	122	116	0
"TCGA-CI-6621-01A-11D-1826-10"	0	0	0	0	117	0	1	1	2	114	4674	2	9	3	14	1131	2	11	1	14	1182	4	10	27	41	1126	4	9	32	45	1235	1	2	1	4	185	0.0341880341880342	0.0888888888888889	0.149797570850202	0.593393393393393	0.0216216216216216	1	1	1	3	156	0.0256410256410256	0.0731707317073171	0.13854351687389	0.528142589118199	0.0192307692307692	0.0341880341880342	4	63	341	2020	0.990647444929587	1	1	0.376217592426122	0.12414769382131	Inf	0.413358427802337	1.73093841642229	0.326297302830718	0.652594605661436	1	1.9739542670859	0.234703514091158	0.998813283328735	1	1	0.207928974144698	1	1	1	113	110	0
"TCGA-CI-6622-01A-11D-1826-10"	0	0	0	0	175	0	3	2	5	170	6970	0	24	2	26	1751	4	21	1	26	1750	4	15	34	53	1753	2	12	51	65	1716	1	1	3	5	255	0.0285714285714286	0.0769230769230769	0.148601398601399	0.517647058823529	0.0196078431372549	1	5	1	7	250	0.04	0.132075471698113	0.142612664004564	0.92611320754717	0.028	0.0342857142857143	6	85	505	2964	0.993766185211254	1	1	0.414377539587089	0.175086713551927	Inf	0.452921336089653	2.28976897689769	0.213832136443327	0.543490013460123	1	2.93338096322543	0.32326150262085	0.998973123527889	1	1	0.289907162495759	0.64040536122916	1	1	169	164	0
"TCGA-CI-6624-01C-11D-1826-10"	0	0	1	1	304	1	3	2	5	296	12136	11	34	11	56	3064	18	44	15	77	3203	21	21	38	80	2935	14	26	43	83	2934	7	2	6	15	454	0.0493421052631579	0.180722891566265	0.154737559645535	1.16793163844807	0.0330396475770925	6	4	5	15	421	0.0493421052631579	0.1875	0.143441226575809	1.30715558194774	0.0356294536817102	0.0789473684210526	24	92	875	4994	0.0597443752335574	1	1	1.48877801829653	0.978139433431172	Inf	1.38774384236453	2.4913306122449	0.00108545982243474	0.0264852196674077	0.132426098337038	3.37158398540877	0.910885361552028	0.678104630176258	1	1	0.896924180376571	0.792494242590731	1	1	280	272	0
"TCGA-CL-5917-01A-11D-1657-10"	0	0	1	1	205	0	1	5	6	199	8159	7	45	4	56	1893	1	44	1	46	1956	4	3	36	43	2176	3	10	41	54	2134	1	2	2	5	276	0.024390243902439	0.0925925925925926	0.12933458294283	0.715915190552872	0.0181159420289855	0	0	3	3	268	0.0146341463414634	0.0697674418604651	0.123161764705882	0.566469975702881	0.0111940298507463	0.0292682926829268	6	78	544	3766	0.96135466476981	1	1	0.532584429883246	0.22464728343126	Inf	0.565913865546218	1.13182773109244	0.611472399934286	0.934751161288476	1	1.15374184978362	0.514467150496562	0.972166973937546	1	1	0.480812111696725	0.118881118881119	0.500120569086087	1	199	193	0
"TCGA-CL-5918-01A-11D-1657-10"	0	0	0	0	228	2	0	2	2	224	9184	5	35	3	43	1944	3	40	8	51	2110	7	12	41	60	2540	4	8	58	70	2590	0	2	0	2	280	0.0087719298245614	0.0285714285714286	0.108108108108108	0.264285714285714	0.00714285714285714	0	1	1	2	269	0.0087719298245614	0.0333333333333333	0.105905511811024	0.314745972738538	0.00743494423791822	0.0043859649122807	1	109	549	4581	0.999995600239979	1	1	0.0765681241560648	0.00385748199593674	Inf	0.0849478390461997	0	1	1	1	0	0.0943864878291108	0.999985082116733	1	1	0.0851623299850121	1	1	1	227	223	0
"TCGA-DC-5337-01A-01D-1657-10"	0	0	0	0	283	1	6	3	9	271	11111	0	61	0	61	2589	2	57	1	60	2508	0	13	58	71	2938	4	14	61	79	3076	0	0	1	1	334	0.00353356890459364	0.0126582278481013	0.108582574772432	0.116576972637004	0.0029940119760479	0	4	4	8	330	0.0282685512367491	0.112676056338028	0.112321307011573	1.00315834400341	0.0242424242424242	0.0176678445229682	5	118	664	5350	0.998282291927292	1	1	0.341447719262921	0.131849080497412	Inf	0.368180037222059	0	1	1	1	0	0.380555836792548	0.997591054356404	1	1	0.353427519812912	0.0294117647058824	0.211072664359862	1	278	266	0
"TCGA-DC-5869-01A-01D-1657-10"	0	0	1	1	187	2	4	10	14	171	7011	1	38	0	39	1463	2	37	1	40	1505	5	5	31	41	1986	4	7	40	51	2057	1	1	3	5	221	0.0267379679144385	0.0980392156862745	0.107438016528926	0.912518853695324	0.0226244343891403	0	1	2	3	198	0.0160427807486631	0.0731707317073171	0.0996978851963746	0.733924611973392	0.0151515151515152	0.0320855614973262	6	74	419	3624	0.847368081933119	1	1	0.701336557330302	0.295050045476196	Inf	0.723687350835322	1.07212940864492	0.626886660414595	0.934751161288476	1	1.0811555033373	0.679518639281993	0.870249495840999	1	1	0.655297278784581	0.118881118881119	0.500120569086087	1	181	165	0
"TCGA-DC-6155-01A-11D-1657-10"	0	1	2	3	144	1	3	1	4	139	5699	4	23	1	28	1172	0	30	0	30	1302	2	7	23	32	1629	4	4	41	49	1596	2	0	3	5	175	0.0347222222222222	0.102040816326531	0.109649122807018	0.930612244897959	0.0285714285714286	0	0	1	1	176	0.00694444444444444	0.03125	0.108041743400859	0.289240056818182	0.00568181818181818	0.0416666666666667	6	64	351	2874	0.786209445290686	1	1	0.767684161657587	0.321214434675218	Inf	0.787545787545788	3.06267806267806	0.132783892000509	0.439407175808849	1	4.0915466773146	0.574252136752137	0.926997818057207	1	1	0.545949412502487	0.567099567099567	1	1	138	133	0
"TCGA-DC-6157-01A-11D-1657-10"	1	0	2	3	183	2	1	4	5	176	7216	5	40	1	46	1736	1	39	2	42	1731	5	5	32	42	1830	6	10	30	46	1919	0	2	2	4	219	0.0218579234972678	0.0869565217391304	0.11412193850964	0.761961485010919	0.0182648401826484	3	1	2	6	225	0.0327868852459016	0.142857142857143	0.122950819672131	1.16190476190476	0.0266666666666667	0.0382513661202186	7	66	444	3305	0.775186912096074	1	1	0.789527613208872	0.355894722169754	Inf	0.809669258299395	2.30282555282555	0.133520838666228	0.439407175808849	1	2.79029249250898	0.544754431851206	0.944654424983543	1	1	0.513429021143428	1	1	1	176	169	0
"TCGA-DC-6158-01A-11D-1657-10"	0	2	0	2	154	1	1	3	4	147	6027	1	30	1	32	1566	1	28	0	29	1559	2	2	29	33	1401	13	2	38	53	1501	7	0	11	18	225	0.116883116883117	0.339622641509434	0.149900066622252	2.26566037735849	0.08	0	1	1	2	219	0.012987012987013	0.0606060606060606	0.156316916488223	0.387712743877128	0.0091324200913242	0.123376623376623	19	63	444	2458	0.0420160871482153	1	1	1.66925737034893	1.02447329759102	Inf	1.51444737420347	3.05015015015015	0.00419221857018053	0.0568278517291138	0.511450665562025	4.84021178254385	1.17063331988705	0.327959658547205	1	1	1.20775715646662	0.204927155190733	0.66867542651632	1	135	128	0
"TCGA-DC-6160-01A-11D-1657-10"	0	0	0	0	187	3	2	5	7	176	7216	4	42	2	48	1627	1	39	2	42	1650	1	6	38	45	1968	1	4	36	41	1971	1	1	3	5	227	0.0267379679144385	0.121951219512195	0.115169964485033	1.05888041259267	0.0220264317180617	0	3	2	5	217	0.0267379679144385	0.111111111111111	0.110264227642276	1.00768049155146	0.0230414746543779	0.0320855614973262	6	70	444	3495	0.869439623082091	1	1	0.6747678751772	0.283482915494687	Inf	0.700391180654339	4.43581081081081	0.213106519126661	0.543490013460123	1	7.86366738625615	0.599433893352812	0.929179956503928	1	1	0.570472581372878	0.140866873065015	0.572858617131061	1	181	170	0
"TCGA-DC-6681-01A-11D-1826-10"	0	0	0	0	178	0	4	0	4	174	7134	0	30	7	37	1721	1	30	3	34	1638	6	4	33	43	1904	6	7	47	60	1871	2	0	2	4	246	0.0224719101123595	0.0666666666666667	0.13148049171566	0.507046070460705	0.016260162601626	2	0	3	5	232	0.0280898876404494	0.116279069767442	0.121848739495798	0.954290296712109	0.021551724137931	0.050561797752809	9	83	478	3297	0.836931099261373	1	1	0.747971634471384	0.375998679530109	Inf	0.772580498453702	2.63249651324965	0.0555974721592623	0.288070888293309	1	3.44687906552164	0.49359309623431	0.97898940059717	1	1	0.459901378254905	1	1	1	169	165	0
"TCGA-DC-6682-01A-11D-1826-10"	0	0	0	0	203	2	4	4	8	193	7913	2	22	1	25	1867	1	39	5	45	2061	4	8	42	54	1913	5	13	51	69	2072	2	1	2	5	308	0.0246305418719212	0.072463768115942	0.148648648648649	0.487483530961792	0.0162337662337662	2	2	3	7	243	0.0344827586206897	0.12962962962963	0.127025614218505	1.0204999237921	0.0288065843621399	0.0443349753694581	9	93	551	3434	0.951910455360714	1	1	0.603190445130785	0.304422244354086	Inf	0.638144550016014	3.21435773341399	0.0260855153439905	0.192630465491309	1	4.98278807124634	0.388833596783951	0.997290287159551	1	1	0.354169650291552	1	1	1	194	184	0
"TCGA-DC-6683-01A-11D-1826-10"	0	0	0	0	118	3	0	0	0	115	4715	4	21	1	26	1256	4	19	0	23	1221	2	5	19	26	1114	3	8	29	40	1124	1	1	1	3	180	0.0254237288135593	0.075	0.160142348754448	0.468333333333333	0.0166666666666667	2	2	2	6	165	0.0508474576271186	0.230769230769231	0.148114901256732	1.55804195804196	0.0363636363636364	0.0508474576271186	6	47	345	1893	0.844811437633864	1	1	0.700560713318969	0.289597718119499	Inf	0.734372436423298	3.89217391304348	0.0290358662102221	0.192630465491309	1	8.21818828604096	0.405434782608696	0.984200809811059	1	1	0.365909160177365	1	1	1	112	109	0
"TCGA-DT-5265-01A-21D-1826-10"	0	0	0	0	118	0	2	2	4	114	4674	2	19	0	21	1121	0	20	1	21	1228	2	7	26	35	1169	2	4	31	37	1156	0	1	4	5	190	0.0423728813559322	0.135135135135135	0.164359861591695	0.822190611664296	0.0263157894736842	0	1	2	3	156	0.0254237288135593	0.0857142857142857	0.133447390932421	0.642307692307692	0.0192307692307692	0.0508474576271186	6	55	346	1979	0.905740658151056	1	1	0.624069353990326	0.259601972529533	Inf	0.660949493035156	0	1	1	1	0	0.707331913599026	0.868253018757733	1	1	0.672999792400662	0.00699300699300699	0.0853146853146853	0.853146853146853	112	108	0
"TCGA-DY-A0XA-01A-11D-A152-10"	0	0	1	1	330	0	1	1	2	327	13407	10	72	5	87	3385	5	66	3	74	3435	14	26	40	80	3304	10	23	53	86	3283	3	3	6	12	484	0.0363636363636364	0.13953488372093	0.147426134632958	0.94647318854507	0.0247933884297521	5	5	5	15	487	0.0454545454545455	0.1875	0.147397094430993	1.27207392197125	0.0308008213552361	0.0575757575757576	19	98	971	5616	0.363980122951567	1	1	1.12135313882886	0.704771874289049	Inf	1.10163106146628	2.261242705115	0.0182865543050491	0.171612278862769	1	2.89121899345088	0.802376443750484	0.824325427341121	1	1	0.775893539782003	0.569404760261442	1	1	311	308	0
"TCGA-DY-A1DC-01A-31D-A152-10"	0	0	1	1	210	1	1	1	2	207	8487	7	48	2	57	2219	4	32	7	43	2101	7	13	26	46	2108	14	14	33	61	2059	4	4	4	12	300	0.0571428571428571	0.19672131147541	0.14570179698883	1.35016393442623	0.04	1	3	1	5	309	0.0238095238095238	0.108695652173913	0.146584440227704	0.741522442662164	0.0161812297734628	0.0476190476190476	10	70	609	3558	0.748954534829262	1	1	0.834657184793601	0.43359845136105	Inf	0.855295566502463	1.62913441238564	0.184203428349453	0.510745869514392	1	1.82541644510344	0.579861401018619	0.94425722169027	1	1	0.541025003465652	1	1	1	200	197	0
"TCGA-DY-A1DD-01A-21D-A152-10"	0	0	0	0	231	1	4	6	10	219	8979	5	51	2	58	2259	7	31	1	39	2306	4	15	43	62	2248	1	13	46	60	2166	0	5	4	9	330	0.038961038961039	0.15	0.152354570637119	0.984545454545455	0.0272727272727273	0	1	3	4	309	0.0173160173160173	0.0645161290322581	0.137455516014235	0.469360058461217	0.0129449838187702	0.0303030303030303	7	87	639	3775	0.987045881440764	1	1	0.475392476408257	0.216381564550529	Inf	0.514400825758332	0	1	1	1	0	0.543299748553744	0.97934941129306	1	1	0.504375754911938	0.00521739130434783	0.0785829307568439	0.636521739130435	224	212	0
"TCGA-DY-A1DF-01A-11D-A152-10"	0	0	0	0	186	1	2	3	5	179	7339	5	25	7	37	1862	3	26	2	31	1831	7	9	39	55	1789	7	8	41	56	1857	4	3	0	7	270	0.0376344086021505	0.125	0.145395799676898	0.859722222222222	0.0259259259259259	2	2	2	6	274	0.032258064516129	0.109090909090909	0.153158188932364	0.71227604512276	0.0218978102189781	0.043010752688172	8	86	544	3102	0.97656018175553	1	1	0.530512992278408	0.255261682570314	Inf	0.570400500625782	2.87237394957983	0.0114745356740415	0.116657779352755	1	4.2743390070296	0.167555147058824	0.999959348660736	1	1	0.146249392799634	0.201556064073226	0.66867542651632	1	178	171	0
"TCGA-DY-A1DG-01A-11D-A152-10"	0	0	0	0	335	1	2	6	8	324	13284	7	62	2	71	3258	8	50	0	58	3222	3	21	64	88	3372	8	28	71	107	3432	2	6	7	15	494	0.0447761194029851	0.14018691588785	0.143939393939394	0.973930152484014	0.0303643724696356	0	4	9	13	479	0.0388059701492537	0.147727272727273	0.142052194543298	1.0399506547732	0.0271398747390397	0.0537313432835821	18	128	973	5831	0.783375112576838	1	1	0.842758114327533	0.527576239264084	Inf	0.862126736966591	1.27141922825376	0.481090433914812	0.823413639291875	1	1.33167070308118	0.828776978417266	0.823033963834145	1	1	0.805779070994293	0.000114104820121922	0.00348019701371862	0.0139207880548745	317	306	0
"TCGA-DY-A1H8-01A-21D-A152-10"	0	0	1	1	171	0	2	1	3	167	6847	1	29	2	32	1761	1	31	2	34	1665	3	11	39	53	1707	2	7	39	48	1714	0	2	1	3	241	0.0175438596491228	0.0625	0.140606767794632	0.444502074688797	0.012448132780083	1	3	1	5	261	0.0292397660818713	0.0943396226415094	0.152899824253076	0.617002819345045	0.0191570881226054	0.0175438596491228	3	80	502	2919	0.999756429999091	1	1	0.218108387629532	0.0581056893724938	Inf	0.246315941055057	1.36294820717131	0.548155567328886	0.879933937027949	1	1.45350086442545	0.174736949637348	0.999932684542012	1	1	0.153062471841843	1	1	1	168	164	0
"TCGA-EF-5830-01A-01D-1657-10"	0	0	4	4	304	2	0	1	1	300	12300	3	91	7	101	2760	3	87	7	97	2867	4	12	38	54	3299	1	20	27	48	3374	1	2	4	7	411	0.0230263157894737	0.145833333333333	0.121813870776526	1.19718167072182	0.0170316301703163	0	1	5	6	373	0.0197368421052632	0.111111111111111	0.113064565019703	0.982722669049747	0.0160857908847185	0.0328947368421053	10	60	784	5889	0.306872923983042	1	1	1.25186708627159	0.647184878974969	Inf	1.21592565597668	1.70229591836735	0.464988077983078	0.810407793056222	1	1.87757958408977	1.1785125588697	0.355053447850572	1	1	1.20716517987164	0.0036074841836048	0.0628732957713979	0.440113070399786	294	290	0
"TCGA-EI-6506-01A-11D-1733-10"	0	0	0	0	262	0	3	5	8	253	10373	5	20	1	26	2561	9	28	4	41	2606	6	25	60	91	2613	8	20	67	95	2593	3	7	4	14	383	0.0534351145038168	0.147368421052632	0.147705360586194	0.997718840181393	0.0365535248041775	0	9	4	13	389	0.049618320610687	0.142857142857143	0.148871029468044	0.959603378626515	0.0334190231362468	0.0419847328244275	11	130	772	4434	0.995732049642114	1	1	0.486044666046226	0.26556068393598	Inf	0.526090471465844	1.44504071058475	0.34576191742961	0.669570697244642	1	1.56625377865222	0.424788870303129	0.999032488573613	1	1	0.386166978449447	0.175080710726683	0.633238627089555	1	251	242	0
"TCGA-EI-6507-01A-11D-1733-10"	0	0	0	0	1086	0	41	147	188	898	36818	10	68	4	82	8320	14	63	6	83	8347	4	51	306	361	9960	5	74	293	372	10191	1	8	6	15	1206	0.0138121546961326	0.0403225806451613	0.118339711510156	0.340735836944311	0.0124378109452736	0	8	8	16	1142	0.0147329650092081	0.0443213296398892	0.114658634538153	0.386550300537037	0.0140105078809107	0.0138121546961326	15	593	2348	17803	1	1	1	0.191800869325677	0.117371070098972	Inf	0.211731849054066	0.953577512776831	0.672148124721192	0.963105618837561	1	0.947773202559119	0.200585586994793	1	1	1	0.181462328522869	0.000183147697995668	0.0044688038310943	0.0223440191554715	1071	883	0
"TCGA-EI-6508-01A-11D-1733-10"	0	1	1	2	179	2	0	2	2	175	7175	3	21	4	28	1755	5	27	5	37	1807	1	13	36	50	1738	5	11	44	60	1875	2	2	4	8	253	0.0446927374301676	0.133333333333333	0.134933333333333	0.988142292490119	0.0316205533596838	0	1	1	2	270	0.0111731843575419	0.04	0.155350978135788	0.257481481481481	0.00740740740740741	0.0391061452513966	7	79	523	3090	0.972686364289351	1	1	0.523588876719305	0.237457731680528	Inf	0.56229712303793	2.30274059910771	0.211899399030622	0.543490013460123	1	2.95286984075204	0.431763862332696	0.993009895742022	1	1	0.39395158503607	0.34984520123839	1	1	172	168	0
"TCGA-EI-6510-01A-11D-1733-10"	0	0	0	0	262	1	0	8	8	251	10291	2	39	2	43	2471	6	54	1	61	2753	3	10	58	71	2478	0	18	58	76	2589	0	3	5	8	413	0.0305343511450382	0.105263157894737	0.159521050598687	0.659870014018096	0.0193704600484262	1	0	2	3	340	0.0114503816793893	0.0422535211267606	0.137207425343019	0.307953603976802	0.00882352941176471	0.0305343511450382	8	111	753	4314	0.99784061396208	1	1	0.412956713309271	0.200238600643806	Inf	0.452375372459741	2.24302788844621	0.383155750982504	0.71224431759644	1	2.86371749698161	0.406065393598022	0.998991786025446	1	1	0.367971415109717	0.0237358101135191	0.180985552115583	1	254	243	0
"TCGA-F5-6464-01A-11D-1733-10"	0	0	0	0	143	0	2	3	5	137	5617	1	25	9	35	1384	3	15	7	25	1523	3	12	21	36	1297	5	10	26	41	1413	1	4	3	8	241	0.0559440559440559	0.195121951219512	0.170559094125973	1.14401376378909	0.033195020746888	0	1	0	1	221	0.00699300699300699	0.0277777777777778	0.170393215111796	0.163021618903972	0.00452488687782805	0.027972027972028	4	51	462	2248	0.989199035833843	1	1	0.381724714068997	0.125392487613223	Inf	0.426603699330972	0.733225108225108	0.775995738216824	1	1	0.695198592009811	0.374412821221332	0.991086692264722	1	1	0.331848727177191	0.576470588235294	1	1	139	133	0
"TCGA-F5-6465-01A-11D-1733-10"	1	0	0	1	215	1	0	4	4	209	8569	5	36	2	43	2225	5	39	3	47	2225	6	13	46	65	2036	5	9	40	54	2083	1	2	2	5	316	0.0232558139534884	0.0925925925925926	0.151704272683629	0.610349273323957	0.0158227848101266	3	2	2	7	314	0.0325581395348837	0.107692307692308	0.154223968565815	0.69828515433611	0.0222929936305732	0.0372093023255814	8	89	630	3489	0.98597237854465	1	1	0.497874437652989	0.239916656311464	Inf	0.539224349533628	2.37748917748918	0.0742983948927533	0.312565661272962	1	3.16338396324615	0.304097452934662	0.999495561196537	1	1	0.270203768826766	1	1	1	207	201	0
"TCGA-F5-6571-01A-12D-1826-10"	0	0	2	2	149	0	0	6	6	143	5863	0	24	0	24	1424	4	23	0	27	1500	1	15	25	41	1471	2	7	42	51	1468	1	1	3	5	217	0.0335570469798658	0.0980392156862745	0.147820163487738	0.663233035149544	0.0230414746543779	1	4	5	10	216	0.0671140939597315	0.24390243902439	0.146838885112169	1.66102077687444	0.0462962962962963	0.0671140939597315	10	60	433	2506	0.594220175420142	1	1	0.964594714960608	0.497034712056613	Inf	0.969646981194325	4.52501924557352	0.0590309197322355	0.288070888293309	1	11.5588830611061	0.810451208162421	0.788141138283091	1	1	0.784808558213666	0.0501749125437281	0.291492349063563	1	139	133	0
"TCGA-F5-6702-01A-11D-1826-10"	0	1	0	1	91	0	0	2	2	89	3649	0	14	2	16	879	2	15	1	18	953	1	5	17	23	873	0	8	24	32	944	0	1	2	3	142	0.032967032967033	0.09375	0.150423728813559	0.623239436619718	0.0211267605633803	1	1	1	3	110	0.032967032967033	0.130434782608696	0.126002290950745	1.03517786561265	0.0272727272727273	0.043956043956044	4	38	252	1565	0.851404543319639	1	1	0.653847654318509	0.211551355255117	Inf	0.686696900982615	7.21031746031746	0.139163916391639	0.439407175808849	1	Inf	0.527584204413473	0.935582770202652	1	1	0.490436347955139	0.545454545454546	1	1	87	85	0
"TCGA-F5-6811-01A-11D-1826-10"	0	0	1	1	181	0	4	2	6	175	7175	3	39	1	43	1763	0	27	2	29	1758	0	5	34	39	1793	4	4	56	64	1861	0	1	1	2	262	0.0110497237569061	0.03125	0.140784524449221	0.221970419847328	0.00763358778625954	0	0	3	3	258	0.0165745856353591	0.0769230769230769	0.143892916899052	0.53458556946929	0.0116279069767442	0.0220994475138122	4	90	520	3134	0.999552611907361	1	1	0.267922101112489	0.0893790365521972	Inf	0.299018003273322	0	1	1	1	0	0.312307692307692	0.999276927933921	1	1	0.280382379827925	0.0476190476190476	0.29047619047619	1	177	171	0
"TCGA-F5-6812-01A-11D-1826-10"	0	0	1	1	137	0	0	4	4	132	5412	3	23	4	30	1359	3	19	4	26	1414	2	14	21	37	1324	3	5	31	39	1315	1	1	1	3	216	0.0218978102189781	0.0769230769230769	0.16425855513308	0.468304843304843	0.0138888888888889	2	2	1	5	196	0.0364963503649635	0.135135135135135	0.148036253776435	0.912851627137342	0.0255102040816327	0.0364963503649635	5	52	412	2227	0.954097412364777	1	1	0.519848511372896	0.196188213586269	Inf	0.561871912791688	3.84320388349515	0.0299998265929088	0.192630465491309	1	8.09884689914492	0.246359223300971	0.998355183028467	1	1	0.216285971676966	1	1	1	132	127	0
"TCGA-F5-6813-01A-11D-1826-10"	0	0	0	0	189	0	3	2	5	184	7544	2	25	5	32	1848	2	27	1	30	1905	8	12	42	62	1964	6	10	44	60	1827	3	3	5	11	259	0.0582010582010582	0.183333333333333	0.14176245210728	1.29324324324324	0.0424710424710425	3	2	4	9	266	0.0476190476190476	0.145161290322581	0.135437881873727	1.07179238418627	0.0338345864661654	0.0793650793650794	15	85	525	3266	0.415059913011344	1	1	1.09781695091772	0.646943827626889	Inf	1.08314285714286	3.09469387755102	0.0079763534670219	0.0973115122976672	0.973115122976672	4.66296435900392	0.755681063122924	0.856700117031116	1	1	0.727178560535809	0.514475543396567	1	1	174	169	0
"TCGA-G5-6235-01A-11D-1733-10"	0	0	2	2	268	1	0	0	0	267	10947	5	28	4	37	2667	7	28	3	38	2865	1	25	55	81	2660	3	32	76	111	2755	0	8	6	14	426	0.0522388059701493	0.126126126126126	0.154627949183303	0.815674829759337	0.0328638497652582	0	7	1	8	366	0.0298507462686567	0.0987654320987654	0.137593984962406	0.717803413613978	0.0218579234972678	0.0261194029850746	7	128	792	4623	0.999845922329928	1	1	0.319260678853998	0.146642842808331	Inf	0.354517396184063	0	1	1	1	0	0.365342354846172	0.999758821225047	1	1	0.329558607799809	0.00890091190715127	0.0920060331825037	1	261	260	0
"TCGA-G5-6641-01A-11D-1826-10"	0	0	0	0	121	2	1	3	4	115	4715	1	16	2	19	1166	5	20	1	26	1240	2	9	31	42	1132	3	3	22	28	1177	2	0	0	2	187	0.0165289256198347	0.0714285714285714	0.158878504672897	0.449579831932773	0.0106951871657754	0	3	0	3	161	0.0247933884297521	0.0714285714285714	0.142226148409894	0.502218278615794	0.0186335403726708	0.0165289256198347	2	56	348	1961	0.9990642955839	1	1	0.201330394473694	0.0348241646547092	Inf	0.228795085216013	2.65402298850575	0.16694524647525	0.484936192142393	1	3.75359405005221	0	1	1	1	0	0.444444444444444	1	1	119	113	0
"Totals"	3	6	33	42	32101	59	240	490	730	31203	1279323	371	2496	882	3749	326092	397	2446	939	3782	330623	393	3963	7329	11685	309645	453	3939	7595	11987	312963	138	2528	486	3152	48301	0.0981900875362138	0.262951530825061	0.154334537948575	1.70377631812185	0.065257448085961	110	2587	441	3138	47387	0.0977539640509641	0.268549422336329	0.153036541846308	1.75480587248259	0.0662206934391289	0.0366032210834553	1175	14595	95688	526920	1	NA	NA	0.443321248947165	0.421331522810524	Inf	0.484800872334135	1.90738576496545	9.513703710102e-25	NA	NA	2.28369046848693	0.404158496351416	1	NA	NA	0.36469540773217	2.45194414382054e-101	NA	NA	30926	30028	NA
