[1] "ofn"        "-oTSARC-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/SARC-TP/22542442/SARC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/SARC-TP/22534094/transformed.cor.cli.txt"

nPatients in clinical file=261, in cluster file=257, common to both=257
[1]  69 257
[1] "AMP PEAK  1(1P32.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE 
                           94                           163 
  AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE 
                           94                           163 
[1] "AMP PEAK  2(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          105                           152 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          105                           152 
[1] "AMP PEAK  3(1Q24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1Q24.3) MUTATED AMP PEAK  3(1Q24.3) WILD-TYPE 
                          102                           155 
  AMP PEAK  3(1Q24.3) MUTATED AMP PEAK  3(1Q24.3) WILD-TYPE 
                          102                           155 
[1] "AMP PEAK  4(2P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(2P11.2) MUTATED AMP PEAK  4(2P11.2) WILD-TYPE 
                           64                           193 
  AMP PEAK  4(2P11.2) MUTATED AMP PEAK  4(2P11.2) WILD-TYPE 
                           64                           193 
[1] "AMP PEAK  5(3P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(3P12.1) MUTATED AMP PEAK  5(3P12.1) WILD-TYPE 
                           69                           188 
  AMP PEAK  5(3P12.1) MUTATED AMP PEAK  5(3P12.1) WILD-TYPE 
                           69                           188 
[1] "AMP PEAK  6(4Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE 
                         78                         179 
  AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE 
                         78                         179 
[1] "AMP PEAK  7(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                           119                            138 
  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                           119                            138 
[1] "AMP PEAK  8(6P21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE 
                           60                           197 
  AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE 
                           60                           197 
[1] "AMP PEAK  9(6Q25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(6Q25.1) MUTATED AMP PEAK  9(6Q25.1) WILD-TYPE 
                           75                           182 
  AMP PEAK  9(6Q25.1) MUTATED AMP PEAK  9(6Q25.1) WILD-TYPE 
                           75                           182 
[1] "AMP PEAK 10(7Q31.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE 
                           77                           180 
  AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE 
                           77                           180 
[1] "AMP PEAK 11(8P11.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(8P11.22) MUTATED AMP PEAK 11(8P11.22) WILD-TYPE 
                            81                            176 
  AMP PEAK 11(8P11.22) MUTATED AMP PEAK 11(8P11.22) WILD-TYPE 
                            81                            176 
[1] "AMP PEAK 12(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                            83                            174 
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                            83                            174 
[1] "AMP PEAK 13(11Q22.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(11Q22.2) MUTATED AMP PEAK 13(11Q22.2) WILD-TYPE 
                            36                            221 
  AMP PEAK 13(11Q22.2) MUTATED AMP PEAK 13(11Q22.2) WILD-TYPE 
                            36                            221 
[1] "AMP PEAK 14(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(12Q15) MUTATED AMP PEAK 14(12Q15) WILD-TYPE 
                          94                          163 
  AMP PEAK 14(12Q15) MUTATED AMP PEAK 14(12Q15) WILD-TYPE 
                          94                          163 
[1] "AMP PEAK 15(13Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE 
                          54                          203 
  AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE 
                          54                          203 
[1] "AMP PEAK 16(15Q26.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE 
                            84                            173 
  AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE 
                            84                            173 
[1] "AMP PEAK 17(17P12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(17P12) MUTATED AMP PEAK 17(17P12) WILD-TYPE 
                         102                          155 
  AMP PEAK 17(17P12) MUTATED AMP PEAK 17(17P12) WILD-TYPE 
                         102                          155 
[1] "AMP PEAK 18(17P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE 
                           104                            153 
  AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE 
                           104                            153 
[1] "AMP PEAK 19(17Q24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(17Q24.3) MUTATED AMP PEAK 19(17Q24.3) WILD-TYPE 
                            79                            178 
  AMP PEAK 19(17Q24.3) MUTATED AMP PEAK 19(17Q24.3) WILD-TYPE 
                            79                            178 
[1] "AMP PEAK 20(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE 
                           108                            149 
  AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE 
                           108                            149 
[1] "AMP PEAK 21(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE 
                          93                          164 
  AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE 
                          93                          164 
[1] "AMP PEAK 22(20Q13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE 
                             98                             159 
  AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE 
                             98                             159 
[1] "AMP PEAK 23(21Q21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(21Q21.1) MUTATED AMP PEAK 23(21Q21.1) WILD-TYPE 
                            73                            184 
  AMP PEAK 23(21Q21.1) MUTATED AMP PEAK 23(21Q21.1) WILD-TYPE 
                            73                            184 
[1] "AMP PEAK 24(XP21.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(XP21.2) MUTATED AMP PEAK 24(XP21.2) WILD-TYPE 
                           97                           160 
  AMP PEAK 24(XP21.2) MUTATED AMP PEAK 24(XP21.2) WILD-TYPE 
                           97                           160 
[1] "AMP PEAK 25(XQ21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE 
                           46                           211 
  AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE 
                           46                           211 
[1] "DEL PEAK  1(1P36.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                            69                            188 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                            69                            188 
[1] "DEL PEAK  2(1Q44) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE 
                         80                         177 
  DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE 
                         80                         177 
[1] "DEL PEAK  3(2P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                           94                           163 
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                           94                           163 
[1] "DEL PEAK  4(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                          108                           149 
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                          108                           149 
[1] "DEL PEAK  5(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                          110                           147 
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                          110                           147 
[1] "DEL PEAK  6(3P21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE 
                            65                            192 
  DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE 
                            65                            192 
[1] "DEL PEAK  7(3Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE 
                            51                            206 
  DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE 
                            51                            206 
[1] "DEL PEAK  8(3Q29) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE 
                         54                         203 
  DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE 
                         54                         203 
[1] "DEL PEAK  9(4Q35.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE 
                           94                           163 
  DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE 
                           94                           163 
[1] "DEL PEAK 10(5P15.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE 
                            33                            224 
  DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE 
                            33                            224 
[1] "DEL PEAK 11(6P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE 
                           81                           176 
  DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE 
                           81                           176 
[1] "DEL PEAK 12(6Q14.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(6Q14.1) MUTATED DEL PEAK 12(6Q14.1) WILD-TYPE 
                           78                           179 
  DEL PEAK 12(6Q14.1) MUTATED DEL PEAK 12(6Q14.1) WILD-TYPE 
                           78                           179 
[1] "DEL PEAK 13(7Q36.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE 
                           71                           186 
  DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE 
                           71                           186 
[1] "DEL PEAK 14(8P23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE 
                           81                           176 
  DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE 
                           81                           176 
[1] "DEL PEAK 15(9P24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE 
                          100                           157 
  DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE 
                          100                           157 
[1] "DEL PEAK 16(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE 
                          114                           143 
  DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE 
                          114                           143 
[1] "DEL PEAK 17(9Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE 
                           61                           196 
  DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE 
                           61                           196 
[1] "DEL PEAK 18(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE 
                           128                            129 
  DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE 
                           128                            129 
[1] "DEL PEAK 19(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE 
                            138                             119 
  DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE 
                            138                             119 
[1] "DEL PEAK 20(10Q26.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE 
                           132                            125 
  DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE 
                           132                            125 
[1] "DEL PEAK 21(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE 
                           110                            147 
  DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE 
                           110                            147 
[1] "DEL PEAK 22(11Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(11Q23.1) MUTATED DEL PEAK 22(11Q23.1) WILD-TYPE 
                           118                            139 
  DEL PEAK 22(11Q23.1) MUTATED DEL PEAK 22(11Q23.1) WILD-TYPE 
                           118                            139 
[1] "DEL PEAK 23(11Q25) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE 
                         123                          134 
  DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE 
                         123                          134 
[1] "DEL PEAK 24(12P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE 
                            87                            170 
  DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE 
                            87                            170 
[1] "DEL PEAK 25(12Q12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(12Q12) MUTATED DEL PEAK 25(12Q12) WILD-TYPE 
                          56                          201 
  DEL PEAK 25(12Q12) MUTATED DEL PEAK 25(12Q12) WILD-TYPE 
                          56                          201 
[1] "DEL PEAK 26(12Q24.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(12Q24.33) MUTATED DEL PEAK 26(12Q24.33) WILD-TYPE 
                             70                             187 
  DEL PEAK 26(12Q24.33) MUTATED DEL PEAK 26(12Q24.33) WILD-TYPE 
                             70                             187 
[1] "DEL PEAK 27(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(13Q14.2) MUTATED DEL PEAK 27(13Q14.2) WILD-TYPE 
                           180                             77 
  DEL PEAK 27(13Q14.2) MUTATED DEL PEAK 27(13Q14.2) WILD-TYPE 
                           180                             77 
[1] "DEL PEAK 28(14Q24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(14Q24.1) MUTATED DEL PEAK 28(14Q24.1) WILD-TYPE 
                            80                            177 
  DEL PEAK 28(14Q24.1) MUTATED DEL PEAK 28(14Q24.1) WILD-TYPE 
                            80                            177 
[1] "DEL PEAK 29(15Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE 
                            47                            210 
  DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE 
                            47                            210 
[1] "DEL PEAK 30(16Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(16Q11.2) MUTATED DEL PEAK 30(16Q11.2) WILD-TYPE 
                           130                            127 
  DEL PEAK 30(16Q11.2) MUTATED DEL PEAK 30(16Q11.2) WILD-TYPE 
                           130                            127 
[1] "DEL PEAK 31(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(16Q23.1) MUTATED DEL PEAK 31(16Q23.1) WILD-TYPE 
                           134                            123 
  DEL PEAK 31(16Q23.1) MUTATED DEL PEAK 31(16Q23.1) WILD-TYPE 
                           134                            123 
[1] "DEL PEAK 32(17P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(17P13.1) MUTATED DEL PEAK 32(17P13.1) WILD-TYPE 
                           129                            128 
  DEL PEAK 32(17P13.1) MUTATED DEL PEAK 32(17P13.1) WILD-TYPE 
                           129                            128 
[1] "DEL PEAK 33(17Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(17Q11.2) MUTATED DEL PEAK 33(17Q11.2) WILD-TYPE 
                            81                            176 
  DEL PEAK 33(17Q11.2) MUTATED DEL PEAK 33(17Q11.2) WILD-TYPE 
                            81                            176 
[1] "DEL PEAK 34(17Q25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(17Q25.3) MUTATED DEL PEAK 34(17Q25.3) WILD-TYPE 
                            67                            190 
  DEL PEAK 34(17Q25.3) MUTATED DEL PEAK 34(17Q25.3) WILD-TYPE 
                            67                            190 
[1] "DEL PEAK 35(18P11.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(18P11.32) MUTATED DEL PEAK 35(18P11.32) WILD-TYPE 
                             68                             189 
  DEL PEAK 35(18P11.32) MUTATED DEL PEAK 35(18P11.32) WILD-TYPE 
                             68                             189 
[1] "DEL PEAK 36(18Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE 
                          86                          171 
  DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE 
                          86                          171 
[1] "DEL PEAK 37(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE 
                            70                            187 
  DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE 
                            70                            187 
[1] "DEL PEAK 38(19Q13.43) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(19Q13.43) MUTATED DEL PEAK 38(19Q13.43) WILD-TYPE 
                            106                             151 
  DEL PEAK 38(19Q13.43) MUTATED DEL PEAK 38(19Q13.43) WILD-TYPE 
                            106                             151 
[1] "DEL PEAK 39(21Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE 
                            51                            206 
  DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE 
                            51                            206 
[1] "DEL PEAK 40(21Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(21Q22.3) MUTATED DEL PEAK 40(21Q22.3) WILD-TYPE 
                            66                            191 
  DEL PEAK 40(21Q22.3) MUTATED DEL PEAK 40(21Q22.3) WILD-TYPE 
                            66                            191 
[1] "DEL PEAK 41(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 41(22Q13.32) MUTATED DEL PEAK 41(22Q13.32) WILD-TYPE 
                             83                             174 
  DEL PEAK 41(22Q13.32) MUTATED DEL PEAK 41(22Q13.32) WILD-TYPE 
                             83                             174 
[1] "DEL PEAK 42(XP21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 42(XP21.1) MUTATED DEL PEAK 42(XP21.1) WILD-TYPE 
                           55                           202 
  DEL PEAK 42(XP21.1) MUTATED DEL PEAK 42(XP21.1) WILD-TYPE 
                           55                           202 
[1] "DEL PEAK 43(XQ21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 43(XQ21.1) MUTATED DEL PEAK 43(XQ21.1) WILD-TYPE 
                          114                           143 
  DEL PEAK 43(XQ21.1) MUTATED DEL PEAK 43(XQ21.1) WILD-TYPE 
                          114                           143 
[1] "DEL PEAK 44(XQ22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 44(XQ22.3) MUTATED DEL PEAK 44(XQ22.3) WILD-TYPE 
                          123                           134 
  DEL PEAK 44(XQ22.3) MUTATED DEL PEAK 44(XQ22.3) WILD-TYPE 
                          123                           134 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 257 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 257 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P32.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P32.1) MUTATED       43     12      6     33
  AMP PEAK  1(1P32.1) WILD-TYPE     52     48     33     30
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                          43                            52
  CLUS_2                          12                            48
  CLUS_3                           6                            33
  CLUS_4                          33                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P32.1) MUTATED       17      8     16     53
  AMP PEAK  1(1P32.1) WILD-TYPE     37     48     56     22
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                          17                            37
  CLUS_2                           8                            48
  CLUS_3                          16                            56
  CLUS_4                          53                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P32.1) MUTATED       21     26     15     26
  AMP PEAK  1(1P32.1) WILD-TYPE     37     19     46     30
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                          21                            37
  CLUS_2                          26                            19
  CLUS_3                          15                            46
  CLUS_4                          26                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P32.1) MUTATED        9     12     35     18      7      7
  AMP PEAK  1(1P32.1) WILD-TYPE     15     23     14     50     15     15
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                           9                            15
  CLUS_2                          12                            23
  CLUS_3                          35                            14
  CLUS_4                          18                            50
  CLUS_5                           7                            15
  CLUS_6                           7                            15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P32.1) MUTATED       60     17     17
  AMP PEAK  1(1P32.1) WILD-TYPE     54     60     47
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                          60                            54
  CLUS_2                          17                            60
  CLUS_3                          17                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P32.1) MUTATED       19      7     10      8     22      6
  AMP PEAK  1(1P32.1) WILD-TYPE     28     14     39     38      8     23
                               vv
clus                            CLUS_7
  AMP PEAK  1(1P32.1) MUTATED       22
  AMP PEAK  1(1P32.1) WILD-TYPE     11
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                          19                            28
  CLUS_2                           7                            14
  CLUS_3                          10                            39
  CLUS_4                           8                            38
  CLUS_5                          22                             8
  CLUS_6                           6                            23
  CLUS_7                          22                            11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P32.1) MUTATED       43     24     25
  AMP PEAK  1(1P32.1) WILD-TYPE     62     26     75
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                          43                            62
  CLUS_2                          24                            26
  CLUS_3                          25                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P32.1) MUTATED       40     15     34      3
  AMP PEAK  1(1P32.1) WILD-TYPE     42     22     80     19
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                          40                            42
  CLUS_2                          15                            22
  CLUS_3                          34                            80
  CLUS_4                           3                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P32.1) MUTATED       21     11     13      9     24
  AMP PEAK  1(1P32.1) WILD-TYPE     37     16     34     14     15
D1V9, multiclass
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                          21                            37
  CLUS_2                          11                            16
  CLUS_3                          13                            34
  CLUS_4                           9                            14
  CLUS_5                          24                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P32.1) MUTATED       27     13     10     25      3
  AMP PEAK  1(1P32.1) WILD-TYPE     31     36     11     17     21
D1V10, multiclass
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                          27                            31
  CLUS_2                          13                            36
  CLUS_3                          10                            11
  CLUS_4                          25                            17
  CLUS_5                           3                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       49      6      9     41
  AMP PEAK  2(1Q21.3) WILD-TYPE     46     54     30     22
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          49                            46
  CLUS_2                           6                            54
  CLUS_3                           9                            30
  CLUS_4                          41                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       17     17     29     42
  AMP PEAK  2(1Q21.3) WILD-TYPE     37     39     43     33
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          17                            37
  CLUS_2                          17                            39
  CLUS_3                          29                            43
  CLUS_4                          42                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       24     25     23     21
  AMP PEAK  2(1Q21.3) WILD-TYPE     34     20     38     35
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          24                            34
  CLUS_2                          25                            20
  CLUS_3                          23                            38
  CLUS_4                          21                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED       14     10     28     25      5     11
  AMP PEAK  2(1Q21.3) WILD-TYPE     10     25     21     43     17     11
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          14                            10
  CLUS_2                          10                            25
  CLUS_3                          28                            21
  CLUS_4                          25                            43
  CLUS_5                           5                            17
  CLUS_6                          11                            11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       51     31     23
  AMP PEAK  2(1Q21.3) WILD-TYPE     63     46     41
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          51                            63
  CLUS_2                          31                            46
  CLUS_3                          23                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED       21      7     14     15     14     16
  AMP PEAK  2(1Q21.3) WILD-TYPE     26     14     35     31     16     13
                               vv
clus                            CLUS_7
  AMP PEAK  2(1Q21.3) MUTATED       18
  AMP PEAK  2(1Q21.3) WILD-TYPE     15
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          21                            26
  CLUS_2                           7                            14
  CLUS_3                          14                            35
  CLUS_4                          15                            31
  CLUS_5                          14                            16
  CLUS_6                          16                            13
  CLUS_7                          18                            15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       41     23     39
  AMP PEAK  2(1Q21.3) WILD-TYPE     64     27     61
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          41                            64
  CLUS_2                          23                            27
  CLUS_3                          39                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       38     12     48      5
  AMP PEAK  2(1Q21.3) WILD-TYPE     44     25     66     17
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          38                            44
  CLUS_2                          12                            25
  CLUS_3                          48                            66
  CLUS_4                           5                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED       21      8     19     18     23
  AMP PEAK  2(1Q21.3) WILD-TYPE     37     19     28      5     16
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          21                            37
  CLUS_2                           8                            19
  CLUS_3                          19                            28
  CLUS_4                          18                             5
  CLUS_5                          23                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED       24     21     13     25      6
  AMP PEAK  2(1Q21.3) WILD-TYPE     34     28      8     17     18
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          24                            34
  CLUS_2                          21                            28
  CLUS_3                          13                             8
  CLUS_4                          25                            17
  CLUS_5                           6                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(1Q24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q24.3) MUTATED       48     12      6     36
  AMP PEAK  3(1Q24.3) WILD-TYPE     47     48     33     27
D3V1, multiclass
        clus
vv       AMP PEAK  3(1Q24.3) MUTATED AMP PEAK  3(1Q24.3) WILD-TYPE
  CLUS_1                          48                            47
  CLUS_2                          12                            48
  CLUS_3                           6                            33
  CLUS_4                          36                            27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q24.3) MUTATED       17     20     25     40
  AMP PEAK  3(1Q24.3) WILD-TYPE     37     36     47     35
D3V2, multiclass
        clus
vv       AMP PEAK  3(1Q24.3) MUTATED AMP PEAK  3(1Q24.3) WILD-TYPE
  CLUS_1                          17                            37
  CLUS_2                          20                            36
  CLUS_3                          25                            47
  CLUS_4                          40                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q24.3) MUTATED       27     23     21     18
  AMP PEAK  3(1Q24.3) WILD-TYPE     31     22     40     38
D3V3, multiclass
        clus
vv       AMP PEAK  3(1Q24.3) MUTATED AMP PEAK  3(1Q24.3) WILD-TYPE
  CLUS_1                          27                            31
  CLUS_2                          23                            22
  CLUS_3                          21                            40
  CLUS_4                          18                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q24.3) MUTATED       11     16     25     23      6      8
  AMP PEAK  3(1Q24.3) WILD-TYPE     13     19     24     45     16     14
D3V4, multiclass
        clus
vv       AMP PEAK  3(1Q24.3) MUTATED AMP PEAK  3(1Q24.3) WILD-TYPE
  CLUS_1                          11                            13
  CLUS_2                          16                            19
  CLUS_3                          25                            24
  CLUS_4                          23                            45
  CLUS_5                           6                            16
  CLUS_6                           8                            14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q24.3) MUTATED       56     28     18
  AMP PEAK  3(1Q24.3) WILD-TYPE     58     49     46
D3V5, multiclass
        clus
vv       AMP PEAK  3(1Q24.3) MUTATED AMP PEAK  3(1Q24.3) WILD-TYPE
  CLUS_1                          56                            58
  CLUS_2                          28                            49
  CLUS_3                          18                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q24.3) MUTATED       24      7     15     14      9     12
  AMP PEAK  3(1Q24.3) WILD-TYPE     23     14     34     32     21     17
                               vv
clus                            CLUS_7
  AMP PEAK  3(1Q24.3) MUTATED       21
  AMP PEAK  3(1Q24.3) WILD-TYPE     12
D3V6, multiclass
        clus
vv       AMP PEAK  3(1Q24.3) MUTATED AMP PEAK  3(1Q24.3) WILD-TYPE
  CLUS_1                          24                            23
  CLUS_2                           7                            14
  CLUS_3                          15                            34
  CLUS_4                          14                            32
  CLUS_5                           9                            21
  CLUS_6                          12                            17
  CLUS_7                          21                            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q24.3) MUTATED       42     21     37
  AMP PEAK  3(1Q24.3) WILD-TYPE     63     29     63
D3V7, multiclass
        clus
vv       AMP PEAK  3(1Q24.3) MUTATED AMP PEAK  3(1Q24.3) WILD-TYPE
  CLUS_1                          42                            63
  CLUS_2                          21                            29
  CLUS_3                          37                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q24.3) MUTATED       39     12     44      5
  AMP PEAK  3(1Q24.3) WILD-TYPE     43     25     70     17
D3V8, multiclass
        clus
vv       AMP PEAK  3(1Q24.3) MUTATED AMP PEAK  3(1Q24.3) WILD-TYPE
  CLUS_1                          39                            43
  CLUS_2                          12                            25
  CLUS_3                          44                            70
  CLUS_4                           5                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q24.3) MUTATED       21     13     18     13     18
  AMP PEAK  3(1Q24.3) WILD-TYPE     37     14     29     10     21
D3V9, multiclass
        clus
vv       AMP PEAK  3(1Q24.3) MUTATED AMP PEAK  3(1Q24.3) WILD-TYPE
  CLUS_1                          21                            37
  CLUS_2                          13                            14
  CLUS_3                          18                            29
  CLUS_4                          13                            10
  CLUS_5                          18                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q24.3) MUTATED       26     18     13     20      6
  AMP PEAK  3(1Q24.3) WILD-TYPE     32     31      8     22     18
D3V10, multiclass
        clus
vv       AMP PEAK  3(1Q24.3) MUTATED AMP PEAK  3(1Q24.3) WILD-TYPE
  CLUS_1                          26                            32
  CLUS_2                          18                            31
  CLUS_3                          13                             8
  CLUS_4                          20                            22
  CLUS_5                           6                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(2P11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2P11.2) MUTATED       35      4      9     16
  AMP PEAK  4(2P11.2) WILD-TYPE     60     56     30     47
D4V1, multiclass
        clus
vv       AMP PEAK  4(2P11.2) MUTATED AMP PEAK  4(2P11.2) WILD-TYPE
  CLUS_1                          35                            60
  CLUS_2                           4                            56
  CLUS_3                           9                            30
  CLUS_4                          16                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2P11.2) MUTATED       10      9     17     28
  AMP PEAK  4(2P11.2) WILD-TYPE     44     47     55     47
D4V2, multiclass
        clus
vv       AMP PEAK  4(2P11.2) MUTATED AMP PEAK  4(2P11.2) WILD-TYPE
  CLUS_1                          10                            44
  CLUS_2                           9                            47
  CLUS_3                          17                            55
  CLUS_4                          28                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2P11.2) MUTATED       17     15     13     11
  AMP PEAK  4(2P11.2) WILD-TYPE     41     30     48     45
D4V3, multiclass
        clus
vv       AMP PEAK  4(2P11.2) MUTATED AMP PEAK  4(2P11.2) WILD-TYPE
  CLUS_1                          17                            41
  CLUS_2                          15                            30
  CLUS_3                          13                            48
  CLUS_4                          11                            45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(2P11.2) MUTATED        8     10     19     13      2      4
  AMP PEAK  4(2P11.2) WILD-TYPE     16     25     30     55     20     18
D4V4, multiclass
        clus
vv       AMP PEAK  4(2P11.2) MUTATED AMP PEAK  4(2P11.2) WILD-TYPE
  CLUS_1                           8                            16
  CLUS_2                          10                            25
  CLUS_3                          19                            30
  CLUS_4                          13                            55
  CLUS_5                           2                            20
  CLUS_6                           4                            18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P11.2) MUTATED       31     18     15
  AMP PEAK  4(2P11.2) WILD-TYPE     83     59     49
D4V5, multiclass
        clus
vv       AMP PEAK  4(2P11.2) MUTATED AMP PEAK  4(2P11.2) WILD-TYPE
  CLUS_1                          31                            83
  CLUS_2                          18                            59
  CLUS_3                          15                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(2P11.2) MUTATED       16      4     11     11     11      6
  AMP PEAK  4(2P11.2) WILD-TYPE     31     17     38     35     19     23
                               vv
clus                            CLUS_7
  AMP PEAK  4(2P11.2) MUTATED        5
  AMP PEAK  4(2P11.2) WILD-TYPE     28
D4V6, multiclass
        clus
vv       AMP PEAK  4(2P11.2) MUTATED AMP PEAK  4(2P11.2) WILD-TYPE
  CLUS_1                          16                            31
  CLUS_2                           4                            17
  CLUS_3                          11                            38
  CLUS_4                          11                            35
  CLUS_5                          11                            19
  CLUS_6                           6                            23
  CLUS_7                           5                            28
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P11.2) MUTATED       27     13     23
  AMP PEAK  4(2P11.2) WILD-TYPE     78     37     77
D4V7, multiclass
        clus
vv       AMP PEAK  4(2P11.2) MUTATED AMP PEAK  4(2P11.2) WILD-TYPE
  CLUS_1                          27                            78
  CLUS_2                          13                            37
  CLUS_3                          23                            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2P11.2) MUTATED       23     10     28      2
  AMP PEAK  4(2P11.2) WILD-TYPE     59     27     86     20
D4V8, multiclass
        clus
vv       AMP PEAK  4(2P11.2) MUTATED AMP PEAK  4(2P11.2) WILD-TYPE
  CLUS_1                          23                            59
  CLUS_2                          10                            27
  CLUS_3                          28                            86
  CLUS_4                           2                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(2P11.2) MUTATED       16     10     12      6     10
  AMP PEAK  4(2P11.2) WILD-TYPE     42     17     35     17     29
D4V9, multiclass
        clus
vv       AMP PEAK  4(2P11.2) MUTATED AMP PEAK  4(2P11.2) WILD-TYPE
  CLUS_1                          16                            42
  CLUS_2                          10                            17
  CLUS_3                          12                            35
  CLUS_4                           6                            17
  CLUS_5                          10                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(2P11.2) MUTATED       16     13      6     13      6
  AMP PEAK  4(2P11.2) WILD-TYPE     42     36     15     29     18
D4V10, multiclass
        clus
vv       AMP PEAK  4(2P11.2) MUTATED AMP PEAK  4(2P11.2) WILD-TYPE
  CLUS_1                          16                            42
  CLUS_2                          13                            36
  CLUS_3                           6                            15
  CLUS_4                          13                            29
  CLUS_5                           6                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(3P12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(3P12.1) MUTATED       38      5      4     22
  AMP PEAK  5(3P12.1) WILD-TYPE     57     55     35     41
D5V1, multiclass
        clus
vv       AMP PEAK  5(3P12.1) MUTATED AMP PEAK  5(3P12.1) WILD-TYPE
  CLUS_1                          38                            57
  CLUS_2                           5                            55
  CLUS_3                           4                            35
  CLUS_4                          22                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(3P12.1) MUTATED       16      6     16     31
  AMP PEAK  5(3P12.1) WILD-TYPE     38     50     56     44
D5V2, multiclass
        clus
vv       AMP PEAK  5(3P12.1) MUTATED AMP PEAK  5(3P12.1) WILD-TYPE
  CLUS_1                          16                            38
  CLUS_2                           6                            50
  CLUS_3                          16                            56
  CLUS_4                          31                            44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(3P12.1) MUTATED       12     12     10     25
  AMP PEAK  5(3P12.1) WILD-TYPE     46     33     51     31
D5V3, multiclass
        clus
vv       AMP PEAK  5(3P12.1) MUTATED AMP PEAK  5(3P12.1) WILD-TYPE
  CLUS_1                          12                            46
  CLUS_2                          12                            33
  CLUS_3                          10                            51
  CLUS_4                          25                            31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(3P12.1) MUTATED        5      9     25     10      9      1
  AMP PEAK  5(3P12.1) WILD-TYPE     19     26     24     58     13     21
D5V4, multiclass
        clus
vv       AMP PEAK  5(3P12.1) MUTATED AMP PEAK  5(3P12.1) WILD-TYPE
  CLUS_1                           5                            19
  CLUS_2                           9                            26
  CLUS_3                          25                            24
  CLUS_4                          10                            58
  CLUS_5                           9                            13
  CLUS_6                           1                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3P12.1) MUTATED       43     17      8
  AMP PEAK  5(3P12.1) WILD-TYPE     71     60     56
D5V5, multiclass
        clus
vv       AMP PEAK  5(3P12.1) MUTATED AMP PEAK  5(3P12.1) WILD-TYPE
  CLUS_1                          43                            71
  CLUS_2                          17                            60
  CLUS_3                           8                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(3P12.1) MUTATED       18      6     12      2     15      4
  AMP PEAK  5(3P12.1) WILD-TYPE     29     15     37     44     15     25
                               vv
clus                            CLUS_7
  AMP PEAK  5(3P12.1) MUTATED       11
  AMP PEAK  5(3P12.1) WILD-TYPE     22
D5V6, multiclass
        clus
vv       AMP PEAK  5(3P12.1) MUTATED AMP PEAK  5(3P12.1) WILD-TYPE
  CLUS_1                          18                            29
  CLUS_2                           6                            15
  CLUS_3                          12                            37
  CLUS_4                           2                            44
  CLUS_5                          15                            15
  CLUS_6                           4                            25
  CLUS_7                          11                            22
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3P12.1) MUTATED       27     19     23
  AMP PEAK  5(3P12.1) WILD-TYPE     78     31     77
D5V7, multiclass
        clus
vv       AMP PEAK  5(3P12.1) MUTATED AMP PEAK  5(3P12.1) WILD-TYPE
  CLUS_1                          27                            78
  CLUS_2                          19                            31
  CLUS_3                          23                            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(3P12.1) MUTATED       29      9     31      0
  AMP PEAK  5(3P12.1) WILD-TYPE     53     28     83     22
D5V8, multiclass
        clus
vv       AMP PEAK  5(3P12.1) MUTATED AMP PEAK  5(3P12.1) WILD-TYPE
  CLUS_1                          29                            53
  CLUS_2                           9                            28
  CLUS_3                          31                            83
  CLUS_4                           0                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(3P12.1) MUTATED       14      7     12      4     23
  AMP PEAK  5(3P12.1) WILD-TYPE     44     20     35     19     16
D5V9, multiclass
        clus
vv       AMP PEAK  5(3P12.1) MUTATED AMP PEAK  5(3P12.1) WILD-TYPE
  CLUS_1                          14                            44
  CLUS_2                           7                            20
  CLUS_3                          12                            35
  CLUS_4                           4                            19
  CLUS_5                          23                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(3P12.1) MUTATED       18     13     10     19      0
  AMP PEAK  5(3P12.1) WILD-TYPE     40     36     11     23     24
D5V10, multiclass
        clus
vv       AMP PEAK  5(3P12.1) MUTATED AMP PEAK  5(3P12.1) WILD-TYPE
  CLUS_1                          18                            40
  CLUS_2                          13                            36
  CLUS_3                          10                            11
  CLUS_4                          19                            23
  CLUS_5                           0                            24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(4Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(4Q12) MUTATED       38      4      8     28
  AMP PEAK  6(4Q12) WILD-TYPE     57     56     31     35
D6V1, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                        38                          57
  CLUS_2                         4                          56
  CLUS_3                         8                          31
  CLUS_4                        28                          35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(4Q12) MUTATED       15     10     14     39
  AMP PEAK  6(4Q12) WILD-TYPE     39     46     58     36
D6V2, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                        15                          39
  CLUS_2                        10                          46
  CLUS_3                        14                          58
  CLUS_4                        39                          36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(4Q12) MUTATED       21     18     10     21
  AMP PEAK  6(4Q12) WILD-TYPE     37     27     51     35
D6V3, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                        21                          37
  CLUS_2                        18                          27
  CLUS_3                        10                          51
  CLUS_4                        21                          35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(4Q12) MUTATED       11     14     24     13      5      3
  AMP PEAK  6(4Q12) WILD-TYPE     13     21     25     55     17     19
D6V4, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                        11                          13
  CLUS_2                        14                          21
  CLUS_3                        24                          25
  CLUS_4                        13                          55
  CLUS_5                         5                          17
  CLUS_6                         3                          19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4Q12) MUTATED       49     14     15
  AMP PEAK  6(4Q12) WILD-TYPE     65     63     49
D6V5, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                        49                          65
  CLUS_2                        14                          63
  CLUS_3                        15                          49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  6(4Q12) MUTATED       19      8      7      9     15      7     13
  AMP PEAK  6(4Q12) WILD-TYPE     28     13     42     37     15     22     20
D6V6, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                        19                          28
  CLUS_2                         8                          13
  CLUS_3                         7                          42
  CLUS_4                         9                          37
  CLUS_5                        15                          15
  CLUS_6                         7                          22
  CLUS_7                        13                          20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4Q12) MUTATED       30     23     24
  AMP PEAK  6(4Q12) WILD-TYPE     75     27     76
D6V7, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                        30                          75
  CLUS_2                        23                          27
  CLUS_3                        24                          76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(4Q12) MUTATED       28     15     33      1
  AMP PEAK  6(4Q12) WILD-TYPE     54     22     81     21
D6V8, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                        28                          54
  CLUS_2                        15                          22
  CLUS_3                        33                          81
  CLUS_4                         1                          21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(4Q12) MUTATED       16     10     11     10     20
  AMP PEAK  6(4Q12) WILD-TYPE     42     17     36     13     19
D6V9, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                        16                          42
  CLUS_2                        10                          17
  CLUS_3                        11                          36
  CLUS_4                        10                          13
  CLUS_5                        20                          19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(4Q12) MUTATED       19     12     12     21      3
  AMP PEAK  6(4Q12) WILD-TYPE     39     37      9     21     21
D6V10, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                        19                          39
  CLUS_2                        12                          37
  CLUS_3                        12                           9
  CLUS_4                        21                          21
  CLUS_5                         3                          21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5P15.33) MUTATED       71      8     14     26
  AMP PEAK  7(5P15.33) WILD-TYPE     24     52     25     37
D7V1, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           71                             24
  CLUS_2                            8                             52
  CLUS_3                           14                             25
  CLUS_4                           26                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5P15.33) MUTATED       24     17     29     49
  AMP PEAK  7(5P15.33) WILD-TYPE     30     39     43     26
D7V2, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           24                             30
  CLUS_2                           17                             39
  CLUS_3                           29                             43
  CLUS_4                           49                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5P15.33) MUTATED       27     26     22     29
  AMP PEAK  7(5P15.33) WILD-TYPE     31     19     39     27
D7V3, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           27                             31
  CLUS_2                           26                             19
  CLUS_3                           22                             39
  CLUS_4                           29                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(5P15.33) MUTATED       11     17     30     24     11     11
  AMP PEAK  7(5P15.33) WILD-TYPE     13     18     19     44     11     11
D7V4, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           11                             13
  CLUS_2                           17                             18
  CLUS_3                           30                             19
  CLUS_4                           24                             44
  CLUS_5                           11                             11
  CLUS_6                           11                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P15.33) MUTATED       64     30     24
  AMP PEAK  7(5P15.33) WILD-TYPE     50     47     40
D7V5, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           64                             50
  CLUS_2                           30                             47
  CLUS_3                           24                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(5P15.33) MUTATED       33      8     23     16     19      6
  AMP PEAK  7(5P15.33) WILD-TYPE     14     13     26     30     11     23
                                vv
clus                             CLUS_7
  AMP PEAK  7(5P15.33) MUTATED       13
  AMP PEAK  7(5P15.33) WILD-TYPE     20
D7V6, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           33                             14
  CLUS_2                            8                             13
  CLUS_3                           23                             26
  CLUS_4                           16                             30
  CLUS_5                           19                             11
  CLUS_6                            6                             23
  CLUS_7                           13                             20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P15.33) MUTATED       50     27     41
  AMP PEAK  7(5P15.33) WILD-TYPE     55     23     59
D7V7, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           50                             55
  CLUS_2                           27                             23
  CLUS_3                           41                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5P15.33) MUTATED       48     15     50      5
  AMP PEAK  7(5P15.33) WILD-TYPE     34     22     64     17
D7V8, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           48                             34
  CLUS_2                           15                             22
  CLUS_3                           50                             64
  CLUS_4                            5                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(5P15.33) MUTATED       27     14     22      9     21
  AMP PEAK  7(5P15.33) WILD-TYPE     31     13     25     14     18
D7V9, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           27                             31
  CLUS_2                           14                             13
  CLUS_3                           22                             25
  CLUS_4                            9                             14
  CLUS_5                           21                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(5P15.33) MUTATED       28     21     12     22     10
  AMP PEAK  7(5P15.33) WILD-TYPE     30     28      9     20     14
D7V10, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           28                             30
  CLUS_2                           21                             28
  CLUS_3                           12                              9
  CLUS_4                           22                             20
  CLUS_5                           10                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(6P21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P21.1) MUTATED       29      5      1     25
  AMP PEAK  8(6P21.1) WILD-TYPE     66     55     38     38
D8V1, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          29                            66
  CLUS_2                           5                            55
  CLUS_3                           1                            38
  CLUS_4                          25                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P21.1) MUTATED        9     11      7     33
  AMP PEAK  8(6P21.1) WILD-TYPE     45     45     65     42
D8V2, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                           9                            45
  CLUS_2                          11                            45
  CLUS_3                           7                            65
  CLUS_4                          33                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P21.1) MUTATED       18     21      5     11
  AMP PEAK  8(6P21.1) WILD-TYPE     40     24     56     45
D8V3, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          18                            40
  CLUS_2                          21                            24
  CLUS_3                           5                            56
  CLUS_4                          11                            45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(6P21.1) MUTATED       12      7     18      7      4      7
  AMP PEAK  8(6P21.1) WILD-TYPE     12     28     31     61     18     15
D8V4, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          12                            12
  CLUS_2                           7                            28
  CLUS_3                          18                            31
  CLUS_4                           7                            61
  CLUS_5                           4                            18
  CLUS_6                           7                            15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P21.1) MUTATED       38      7     15
  AMP PEAK  8(6P21.1) WILD-TYPE     76     70     49
D8V5, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          38                            76
  CLUS_2                           7                            70
  CLUS_3                          15                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(6P21.1) MUTATED       21      3      3      9      9      4
  AMP PEAK  8(6P21.1) WILD-TYPE     26     18     46     37     21     25
                               vv
clus                            CLUS_7
  AMP PEAK  8(6P21.1) MUTATED       11
  AMP PEAK  8(6P21.1) WILD-TYPE     22
D8V6, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          21                            26
  CLUS_2                           3                            18
  CLUS_3                           3                            46
  CLUS_4                           9                            37
  CLUS_5                           9                            21
  CLUS_6                           4                            25
  CLUS_7                          11                            22
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P21.1) MUTATED       30     16     13
  AMP PEAK  8(6P21.1) WILD-TYPE     75     34     87
D8V7, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          30                            75
  CLUS_2                          16                            34
  CLUS_3                          13                            87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P21.1) MUTATED       29      9     18      3
  AMP PEAK  8(6P21.1) WILD-TYPE     53     28     96     19
D8V8, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          29                            53
  CLUS_2                           9                            28
  CLUS_3                          18                            96
  CLUS_4                           3                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6P21.1) MUTATED       14      9      5     10     11
  AMP PEAK  8(6P21.1) WILD-TYPE     44     18     42     13     28
D8V9, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          14                            44
  CLUS_2                           9                            18
  CLUS_3                           5                            42
  CLUS_4                          10                            13
  CLUS_5                          11                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6P21.1) MUTATED       20      6      8     12      3
  AMP PEAK  8(6P21.1) WILD-TYPE     38     43     13     30     21
D8V10, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          20                            38
  CLUS_2                           6                            43
  CLUS_3                           8                            13
  CLUS_4                          12                            30
  CLUS_5                           3                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(6Q25.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q25.1) MUTATED       37     14      3     21
  AMP PEAK  9(6Q25.1) WILD-TYPE     58     46     36     42
D9V1, multiclass
        clus
vv       AMP PEAK  9(6Q25.1) MUTATED AMP PEAK  9(6Q25.1) WILD-TYPE
  CLUS_1                          37                            58
  CLUS_2                          14                            46
  CLUS_3                           3                            36
  CLUS_4                          21                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q25.1) MUTATED       20     15      8     32
  AMP PEAK  9(6Q25.1) WILD-TYPE     34     41     64     43
D9V2, multiclass
        clus
vv       AMP PEAK  9(6Q25.1) MUTATED AMP PEAK  9(6Q25.1) WILD-TYPE
  CLUS_1                          20                            34
  CLUS_2                          15                            41
  CLUS_3                           8                            64
  CLUS_4                          32                            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q25.1) MUTATED       25     13      7     23
  AMP PEAK  9(6Q25.1) WILD-TYPE     33     32     54     33
D9V3, multiclass
        clus
vv       AMP PEAK  9(6Q25.1) MUTATED AMP PEAK  9(6Q25.1) WILD-TYPE
  CLUS_1                          25                            33
  CLUS_2                          13                            32
  CLUS_3                           7                            54
  CLUS_4                          23                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(6Q25.1) MUTATED       13     13     16      8     11      7
  AMP PEAK  9(6Q25.1) WILD-TYPE     11     22     33     60     11     15
D9V4, multiclass
        clus
vv       AMP PEAK  9(6Q25.1) MUTATED AMP PEAK  9(6Q25.1) WILD-TYPE
  CLUS_1                          13                            11
  CLUS_2                          13                            22
  CLUS_3                          16                            33
  CLUS_4                           8                            60
  CLUS_5                          11                            11
  CLUS_6                           7                            15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q25.1) MUTATED       54      8     12
  AMP PEAK  9(6Q25.1) WILD-TYPE     60     69     52
D9V5, multiclass
        clus
vv       AMP PEAK  9(6Q25.1) MUTATED AMP PEAK  9(6Q25.1) WILD-TYPE
  CLUS_1                          54                            60
  CLUS_2                           8                            69
  CLUS_3                          12                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(6Q25.1) MUTATED       26     12      5     10      8      3
  AMP PEAK  9(6Q25.1) WILD-TYPE     21      9     44     36     22     26
                               vv
clus                            CLUS_7
  AMP PEAK  9(6Q25.1) MUTATED       10
  AMP PEAK  9(6Q25.1) WILD-TYPE     23
D9V6, multiclass
        clus
vv       AMP PEAK  9(6Q25.1) MUTATED AMP PEAK  9(6Q25.1) WILD-TYPE
  CLUS_1                          26                            21
  CLUS_2                          12                             9
  CLUS_3                           5                            44
  CLUS_4                          10                            36
  CLUS_5                           8                            22
  CLUS_6                           3                            26
  CLUS_7                          10                            23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q25.1) MUTATED       42     18     15
  AMP PEAK  9(6Q25.1) WILD-TYPE     63     32     85
D9V7, multiclass
        clus
vv       AMP PEAK  9(6Q25.1) MUTATED AMP PEAK  9(6Q25.1) WILD-TYPE
  CLUS_1                          42                            63
  CLUS_2                          18                            32
  CLUS_3                          15                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q25.1) MUTATED       37     14     22      2
  AMP PEAK  9(6Q25.1) WILD-TYPE     45     23     92     20
D9V8, multiclass
        clus
vv       AMP PEAK  9(6Q25.1) MUTATED AMP PEAK  9(6Q25.1) WILD-TYPE
  CLUS_1                          37                            45
  CLUS_2                          14                            23
  CLUS_3                          22                            92
  CLUS_4                           2                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(6Q25.1) MUTATED       17     15      7      6     20
  AMP PEAK  9(6Q25.1) WILD-TYPE     41     12     40     17     19
D9V9, multiclass
        clus
vv       AMP PEAK  9(6Q25.1) MUTATED AMP PEAK  9(6Q25.1) WILD-TYPE
  CLUS_1                          17                            41
  CLUS_2                          15                            12
  CLUS_3                           7                            40
  CLUS_4                           6                            17
  CLUS_5                          20                            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(6Q25.1) MUTATED       24      8      9     21      3
  AMP PEAK  9(6Q25.1) WILD-TYPE     34     41     12     21     21
D9V10, multiclass
        clus
vv       AMP PEAK  9(6Q25.1) MUTATED AMP PEAK  9(6Q25.1) WILD-TYPE
  CLUS_1                          24                            34
  CLUS_2                           8                            41
  CLUS_3                           9                            12
  CLUS_4                          21                            21
  CLUS_5                           3                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(7Q31.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7Q31.2) MUTATED       43      9      9     16
  AMP PEAK 10(7Q31.2) WILD-TYPE     52     51     30     47
D10V1, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          43                            52
  CLUS_2                           9                            51
  CLUS_3                           9                            30
  CLUS_4                          16                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7Q31.2) MUTATED       20     13     10     34
  AMP PEAK 10(7Q31.2) WILD-TYPE     34     43     62     41
D10V2, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          20                            34
  CLUS_2                          13                            43
  CLUS_3                          10                            62
  CLUS_4                          34                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7Q31.2) MUTATED       18     17     11     25
  AMP PEAK 10(7Q31.2) WILD-TYPE     40     28     50     31
D10V3, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          18                            40
  CLUS_2                          17                            28
  CLUS_3                          11                            50
  CLUS_4                          25                            31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(7Q31.2) MUTATED       11     16     22     10      8      4
  AMP PEAK 10(7Q31.2) WILD-TYPE     13     19     27     58     14     18
D10V4, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          11                            13
  CLUS_2                          16                            19
  CLUS_3                          22                            27
  CLUS_4                          10                            58
  CLUS_5                           8                            14
  CLUS_6                           4                            18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7Q31.2) MUTATED       49     10     18
  AMP PEAK 10(7Q31.2) WILD-TYPE     65     67     46
D10V5, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          49                            65
  CLUS_2                          10                            67
  CLUS_3                          18                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(7Q31.2) MUTATED       21      7      6     13     13      5
  AMP PEAK 10(7Q31.2) WILD-TYPE     26     14     43     33     17     24
                               vv
clus                            CLUS_7
  AMP PEAK 10(7Q31.2) MUTATED       12
  AMP PEAK 10(7Q31.2) WILD-TYPE     21
D10V6, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          21                            26
  CLUS_2                           7                            14
  CLUS_3                           6                            43
  CLUS_4                          13                            33
  CLUS_5                          13                            17
  CLUS_6                           5                            24
  CLUS_7                          12                            21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7Q31.2) MUTATED       32     26     19
  AMP PEAK 10(7Q31.2) WILD-TYPE     73     24     81
D10V7, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          32                            73
  CLUS_2                          26                            24
  CLUS_3                          19                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7Q31.2) MUTATED       28     17     28      4
  AMP PEAK 10(7Q31.2) WILD-TYPE     54     20     86     18
D10V8, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          28                            54
  CLUS_2                          17                            20
  CLUS_3                          28                            86
  CLUS_4                           4                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(7Q31.2) MUTATED       15      9      5     11     21
  AMP PEAK 10(7Q31.2) WILD-TYPE     43     18     42     12     18
D10V9, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          15                            43
  CLUS_2                           9                            18
  CLUS_3                           5                            42
  CLUS_4                          11                            12
  CLUS_5                          21                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(7Q31.2) MUTATED       19      6     10     21      5
  AMP PEAK 10(7Q31.2) WILD-TYPE     39     43     11     21     19
D10V10, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          19                            39
  CLUS_2                           6                            43
  CLUS_3                          10                            11
  CLUS_4                          21                            21
  CLUS_5                           5                            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(8P11.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(8P11.22) MUTATED       44      5     10     22
  AMP PEAK 11(8P11.22) WILD-TYPE     51     55     29     41
D11V1, multiclass
        clus
vv       AMP PEAK 11(8P11.22) MUTATED AMP PEAK 11(8P11.22) WILD-TYPE
  CLUS_1                           44                             51
  CLUS_2                            5                             55
  CLUS_3                           10                             29
  CLUS_4                           22                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(8P11.22) MUTATED       18      9     20     34
  AMP PEAK 11(8P11.22) WILD-TYPE     36     47     52     41
D11V2, multiclass
        clus
vv       AMP PEAK 11(8P11.22) MUTATED AMP PEAK 11(8P11.22) WILD-TYPE
  CLUS_1                           18                             36
  CLUS_2                            9                             47
  CLUS_3                           20                             52
  CLUS_4                           34                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(8P11.22) MUTATED       17     23     15     17
  AMP PEAK 11(8P11.22) WILD-TYPE     41     22     46     39
D11V3, multiclass
        clus
vv       AMP PEAK 11(8P11.22) MUTATED AMP PEAK 11(8P11.22) WILD-TYPE
  CLUS_1                           17                             41
  CLUS_2                           23                             22
  CLUS_3                           15                             46
  CLUS_4                           17                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8P11.22) MUTATED        9     10     24     18      7      4
  AMP PEAK 11(8P11.22) WILD-TYPE     15     25     25     50     15     18
D11V4, multiclass
        clus
vv       AMP PEAK 11(8P11.22) MUTATED AMP PEAK 11(8P11.22) WILD-TYPE
  CLUS_1                            9                             15
  CLUS_2                           10                             25
  CLUS_3                           24                             25
  CLUS_4                           18                             50
  CLUS_5                            7                             15
  CLUS_6                            4                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8P11.22) MUTATED       41     21     19
  AMP PEAK 11(8P11.22) WILD-TYPE     73     56     45
D11V5, multiclass
        clus
vv       AMP PEAK 11(8P11.22) MUTATED AMP PEAK 11(8P11.22) WILD-TYPE
  CLUS_1                           41                             73
  CLUS_2                           21                             56
  CLUS_3                           19                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8P11.22) MUTATED       18      6     13      9     18      7
  AMP PEAK 11(8P11.22) WILD-TYPE     29     15     36     37     12     22
                                vv
clus                             CLUS_7
  AMP PEAK 11(8P11.22) MUTATED       10
  AMP PEAK 11(8P11.22) WILD-TYPE     23
D11V6, multiclass
        clus
vv       AMP PEAK 11(8P11.22) MUTATED AMP PEAK 11(8P11.22) WILD-TYPE
  CLUS_1                           18                             29
  CLUS_2                            6                             15
  CLUS_3                           13                             36
  CLUS_4                            9                             37
  CLUS_5                           18                             12
  CLUS_6                            7                             22
  CLUS_7                           10                             23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8P11.22) MUTATED       28     21     31
  AMP PEAK 11(8P11.22) WILD-TYPE     77     29     69
D11V7, multiclass
        clus
vv       AMP PEAK 11(8P11.22) MUTATED AMP PEAK 11(8P11.22) WILD-TYPE
  CLUS_1                           28                             77
  CLUS_2                           21                             29
  CLUS_3                           31                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(8P11.22) MUTATED       32     10     37      1
  AMP PEAK 11(8P11.22) WILD-TYPE     50     27     77     21
D11V8, multiclass
        clus
vv       AMP PEAK 11(8P11.22) MUTATED AMP PEAK 11(8P11.22) WILD-TYPE
  CLUS_1                           32                             50
  CLUS_2                           10                             27
  CLUS_3                           37                             77
  CLUS_4                            1                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(8P11.22) MUTATED       15     12     12     10     18
  AMP PEAK 11(8P11.22) WILD-TYPE     43     15     35     13     21
D11V9, multiclass
        clus
vv       AMP PEAK 11(8P11.22) MUTATED AMP PEAK 11(8P11.22) WILD-TYPE
  CLUS_1                           15                             43
  CLUS_2                           12                             15
  CLUS_3                           12                             35
  CLUS_4                           10                             13
  CLUS_5                           18                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(8P11.22) MUTATED       22     15     12     15      3
  AMP PEAK 11(8P11.22) WILD-TYPE     36     34      9     27     21
D11V10, multiclass
        clus
vv       AMP PEAK 11(8P11.22) MUTATED AMP PEAK 11(8P11.22) WILD-TYPE
  CLUS_1                           22                             36
  CLUS_2                           15                             34
  CLUS_3                           12                              9
  CLUS_4                           15                             27
  CLUS_5                            3                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q24.21) MUTATED       40      6     15     22
  AMP PEAK 12(8Q24.21) WILD-TYPE     55     54     24     41
D12V1, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           40                             55
  CLUS_2                            6                             54
  CLUS_3                           15                             24
  CLUS_4                           22                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q24.21) MUTATED       15     13     21     34
  AMP PEAK 12(8Q24.21) WILD-TYPE     39     43     51     41
D12V2, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           15                             39
  CLUS_2                           13                             43
  CLUS_3                           21                             51
  CLUS_4                           34                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q24.21) MUTATED       14     20     13     25
  AMP PEAK 12(8Q24.21) WILD-TYPE     44     25     48     31
D12V3, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           14                             44
  CLUS_2                           20                             25
  CLUS_3                           13                             48
  CLUS_4                           25                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8Q24.21) MUTATED        7      6     25     16      8     10
  AMP PEAK 12(8Q24.21) WILD-TYPE     17     29     24     52     14     12
D12V4, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                            7                             17
  CLUS_2                            6                             29
  CLUS_3                           25                             24
  CLUS_4                           16                             52
  CLUS_5                            8                             14
  CLUS_6                           10                             12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED       40     22     21
  AMP PEAK 12(8Q24.21) WILD-TYPE     74     55     43
D12V5, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           40                             74
  CLUS_2                           22                             55
  CLUS_3                           21                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8Q24.21) MUTATED       12      6     15     16     15      6
  AMP PEAK 12(8Q24.21) WILD-TYPE     35     15     34     30     15     23
                                vv
clus                             CLUS_7
  AMP PEAK 12(8Q24.21) MUTATED       13
  AMP PEAK 12(8Q24.21) WILD-TYPE     20
D12V6, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           12                             35
  CLUS_2                            6                             15
  CLUS_3                           15                             34
  CLUS_4                           16                             30
  CLUS_5                           15                             15
  CLUS_6                            6                             23
  CLUS_7                           13                             20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED       30     20     32
  AMP PEAK 12(8Q24.21) WILD-TYPE     75     30     68
D12V7, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           30                             75
  CLUS_2                           20                             30
  CLUS_3                           32                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q24.21) MUTATED       28      9     41      4
  AMP PEAK 12(8Q24.21) WILD-TYPE     54     28     73     18
D12V8, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           28                             54
  CLUS_2                            9                             28
  CLUS_3                           41                             73
  CLUS_4                            4                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(8Q24.21) MUTATED       15      8     13     13     17
  AMP PEAK 12(8Q24.21) WILD-TYPE     43     19     34     10     22
D12V9, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           15                             43
  CLUS_2                            8                             19
  CLUS_3                           13                             34
  CLUS_4                           13                             10
  CLUS_5                           17                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(8Q24.21) MUTATED       15     14     12     18      7
  AMP PEAK 12(8Q24.21) WILD-TYPE     43     35      9     24     17
D12V10, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           15                             43
  CLUS_2                           14                             35
  CLUS_3                           12                              9
  CLUS_4                           18                             24
  CLUS_5                            7                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(11Q22.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(11Q22.2) MUTATED       18      5      5      8
  AMP PEAK 13(11Q22.2) WILD-TYPE     77     55     34     55
D13V1, multiclass
        clus
vv       AMP PEAK 13(11Q22.2) MUTATED AMP PEAK 13(11Q22.2) WILD-TYPE
  CLUS_1                           18                             77
  CLUS_2                            5                             55
  CLUS_3                            5                             34
  CLUS_4                            8                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(11Q22.2) MUTATED        8      6      4     18
  AMP PEAK 13(11Q22.2) WILD-TYPE     46     50     68     57
D13V2, multiclass
        clus
vv       AMP PEAK 13(11Q22.2) MUTATED AMP PEAK 13(11Q22.2) WILD-TYPE
  CLUS_1                            8                             46
  CLUS_2                            6                             50
  CLUS_3                            4                             68
  CLUS_4                           18                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(11Q22.2) MUTATED       12      8      6      9
  AMP PEAK 13(11Q22.2) WILD-TYPE     46     37     55     47
D13V3, multiclass
        clus
vv       AMP PEAK 13(11Q22.2) MUTATED AMP PEAK 13(11Q22.2) WILD-TYPE
  CLUS_1                           12                             46
  CLUS_2                            8                             37
  CLUS_3                            6                             55
  CLUS_4                            9                             47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(11Q22.2) MUTATED        6      7     10      5      3      4
  AMP PEAK 13(11Q22.2) WILD-TYPE     18     28     39     63     19     18
D13V4, multiclass
        clus
vv       AMP PEAK 13(11Q22.2) MUTATED AMP PEAK 13(11Q22.2) WILD-TYPE
  CLUS_1                            6                             18
  CLUS_2                            7                             28
  CLUS_3                           10                             39
  CLUS_4                            5                             63
  CLUS_5                            3                             19
  CLUS_6                            4                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11Q22.2) MUTATED       22      4     10
  AMP PEAK 13(11Q22.2) WILD-TYPE     92     73     54
D13V5, multiclass
        clus
vv       AMP PEAK 13(11Q22.2) MUTATED AMP PEAK 13(11Q22.2) WILD-TYPE
  CLUS_1                           22                             92
  CLUS_2                            4                             73
  CLUS_3                           10                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(11Q22.2) MUTATED       10      2      2      5     11      2
  AMP PEAK 13(11Q22.2) WILD-TYPE     37     19     47     41     19     27
                                vv
clus                             CLUS_7
  AMP PEAK 13(11Q22.2) MUTATED        4
  AMP PEAK 13(11Q22.2) WILD-TYPE     29
D13V6, multiclass
        clus
vv       AMP PEAK 13(11Q22.2) MUTATED AMP PEAK 13(11Q22.2) WILD-TYPE
  CLUS_1                           10                             37
  CLUS_2                            2                             19
  CLUS_3                            2                             47
  CLUS_4                            5                             41
  CLUS_5                           11                             19
  CLUS_6                            2                             27
  CLUS_7                            4                             29
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11Q22.2) MUTATED       19      8      9
  AMP PEAK 13(11Q22.2) WILD-TYPE     86     42     91
D13V7, multiclass
        clus
vv       AMP PEAK 13(11Q22.2) MUTATED AMP PEAK 13(11Q22.2) WILD-TYPE
  CLUS_1                           19                             86
  CLUS_2                            8                             42
  CLUS_3                            9                             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(11Q22.2) MUTATED       19      7     10      0
  AMP PEAK 13(11Q22.2) WILD-TYPE     63     30    104     22
D13V8, multiclass
        clus
vv       AMP PEAK 13(11Q22.2) MUTATED AMP PEAK 13(11Q22.2) WILD-TYPE
  CLUS_1                           19                             63
  CLUS_2                            7                             30
  CLUS_3                           10                            104
  CLUS_4                            0                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(11Q22.2) MUTATED       12      3      3      3      7
  AMP PEAK 13(11Q22.2) WILD-TYPE     46     24     44     20     32
D13V9, multiclass
        clus
vv       AMP PEAK 13(11Q22.2) MUTATED AMP PEAK 13(11Q22.2) WILD-TYPE
  CLUS_1                           12                             46
  CLUS_2                            3                             24
  CLUS_3                            3                             44
  CLUS_4                            3                             20
  CLUS_5                            7                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(11Q22.2) MUTATED       12      4      3      8      1
  AMP PEAK 13(11Q22.2) WILD-TYPE     46     45     18     34     23
D13V10, multiclass
        clus
vv       AMP PEAK 13(11Q22.2) MUTATED AMP PEAK 13(11Q22.2) WILD-TYPE
  CLUS_1                           12                             46
  CLUS_2                            4                             45
  CLUS_3                            3                             18
  CLUS_4                            8                             34
  CLUS_5                            1                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q15) MUTATED       56     28      5      5
  AMP PEAK 14(12Q15) WILD-TYPE     39     32     34     58
D14V1, multiclass
        clus
vv       AMP PEAK 14(12Q15) MUTATED AMP PEAK 14(12Q15) WILD-TYPE
  CLUS_1                         56                           39
  CLUS_2                         28                           32
  CLUS_3                          5                           34
  CLUS_4                          5                           58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q15) MUTATED       30     24      2     38
  AMP PEAK 14(12Q15) WILD-TYPE     24     32     70     37
D14V2, multiclass
        clus
vv       AMP PEAK 14(12Q15) MUTATED AMP PEAK 14(12Q15) WILD-TYPE
  CLUS_1                         30                           24
  CLUS_2                         24                           32
  CLUS_3                          2                           70
  CLUS_4                         38                           37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q15) MUTATED       37     20      2     29
  AMP PEAK 14(12Q15) WILD-TYPE     21     25     59     27
D14V3, multiclass
        clus
vv       AMP PEAK 14(12Q15) MUTATED AMP PEAK 14(12Q15) WILD-TYPE
  CLUS_1                         37                           21
  CLUS_2                         20                           25
  CLUS_3                          2                           59
  CLUS_4                         29                           27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(12Q15) MUTATED       13     24     23      7     14      7
  AMP PEAK 14(12Q15) WILD-TYPE     11     11     26     61      8     15
D14V4, multiclass
        clus
vv       AMP PEAK 14(12Q15) MUTATED AMP PEAK 14(12Q15) WILD-TYPE
  CLUS_1                         13                           11
  CLUS_2                         24                           11
  CLUS_3                         23                           26
  CLUS_4                          7                           61
  CLUS_5                         14                            8
  CLUS_6                          7                           15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12Q15) MUTATED       59      2     33
  AMP PEAK 14(12Q15) WILD-TYPE     55     75     31
D14V5, multiclass
        clus
vv       AMP PEAK 14(12Q15) MUTATED AMP PEAK 14(12Q15) WILD-TYPE
  CLUS_1                         59                           55
  CLUS_2                          2                           75
  CLUS_3                         33                           31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 14(12Q15) MUTATED       30     12      1     25     14      1     11
  AMP PEAK 14(12Q15) WILD-TYPE     17      9     48     21     16     28     22
D14V6, multiclass
        clus
vv       AMP PEAK 14(12Q15) MUTATED AMP PEAK 14(12Q15) WILD-TYPE
  CLUS_1                         30                           17
  CLUS_2                         12                            9
  CLUS_3                          1                           48
  CLUS_4                         25                           21
  CLUS_5                         14                           16
  CLUS_6                          1                           28
  CLUS_7                         11                           22
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12Q15) MUTATED       58     24     10
  AMP PEAK 14(12Q15) WILD-TYPE     47     26     90
D14V7, multiclass
        clus
vv       AMP PEAK 14(12Q15) MUTATED AMP PEAK 14(12Q15) WILD-TYPE
  CLUS_1                         58                           47
  CLUS_2                         24                           26
  CLUS_3                         10                           90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q15) MUTATED       50     19     16      7
  AMP PEAK 14(12Q15) WILD-TYPE     32     18     98     15
D14V8, multiclass
        clus
vv       AMP PEAK 14(12Q15) MUTATED AMP PEAK 14(12Q15) WILD-TYPE
  CLUS_1                         50                           32
  CLUS_2                         19                           18
  CLUS_3                         16                           98
  CLUS_4                          7                           15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(12Q15) MUTATED       35     17      1      6     16
  AMP PEAK 14(12Q15) WILD-TYPE     23     10     46     17     23
D14V9, multiclass
        clus
vv       AMP PEAK 14(12Q15) MUTATED AMP PEAK 14(12Q15) WILD-TYPE
  CLUS_1                         35                           23
  CLUS_2                         17                           10
  CLUS_3                          1                           46
  CLUS_4                          6                           17
  CLUS_5                         16                           23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(12Q15) MUTATED       37      1      8     20      9
  AMP PEAK 14(12Q15) WILD-TYPE     21     48     13     22     15
D14V10, multiclass
        clus
vv       AMP PEAK 14(12Q15) MUTATED AMP PEAK 14(12Q15) WILD-TYPE
  CLUS_1                         37                           21
  CLUS_2                          1                           48
  CLUS_3                          8                           13
  CLUS_4                         20                           22
  CLUS_5                          9                           15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q34) MUTATED       11      3      5     35
  AMP PEAK 15(13Q34) WILD-TYPE     84     57     34     28
D15V1, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         11                           84
  CLUS_2                          3                           57
  CLUS_3                          5                           34
  CLUS_4                         35                           28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q34) MUTATED        7      9     16     22
  AMP PEAK 15(13Q34) WILD-TYPE     47     47     56     53
D15V2, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                          7                           47
  CLUS_2                          9                           47
  CLUS_3                         16                           56
  CLUS_4                         22                           53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q34) MUTATED       14     11     13     12
  AMP PEAK 15(13Q34) WILD-TYPE     44     34     48     44
D15V3, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         14                           44
  CLUS_2                         11                           34
  CLUS_3                         13                           48
  CLUS_4                         12                           44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(13Q34) MUTATED       10      4     16     14      5      1
  AMP PEAK 15(13Q34) WILD-TYPE     14     31     33     54     17     21
D15V4, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         10                           14
  CLUS_2                          4                           31
  CLUS_3                         16                           33
  CLUS_4                         14                           54
  CLUS_5                          5                           17
  CLUS_6                          1                           21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q34) MUTATED       27     16     10
  AMP PEAK 15(13Q34) WILD-TYPE     87     61     54
D15V5, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         27                           87
  CLUS_2                         16                           61
  CLUS_3                         10                           54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 15(13Q34) MUTATED       13      1     10      6      6      6     11
  AMP PEAK 15(13Q34) WILD-TYPE     34     20     39     40     24     23     22
D15V6, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         13                           34
  CLUS_2                          1                           20
  CLUS_3                         10                           39
  CLUS_4                          6                           40
  CLUS_5                          6                           24
  CLUS_6                          6                           23
  CLUS_7                         11                           22
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q34) MUTATED       23     12     18
  AMP PEAK 15(13Q34) WILD-TYPE     82     38     82
D15V7, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         23                           82
  CLUS_2                         12                           38
  CLUS_3                         18                           82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q34) MUTATED       21      9     22      1
  AMP PEAK 15(13Q34) WILD-TYPE     61     28     92     21
D15V8, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         21                           61
  CLUS_2                          9                           28
  CLUS_3                         22                           92
  CLUS_4                          1                           21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(13Q34) MUTATED       11      8     12      5     10
  AMP PEAK 15(13Q34) WILD-TYPE     47     19     35     18     29
D15V9, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         11                           47
  CLUS_2                          8                           19
  CLUS_3                         12                           35
  CLUS_4                          5                           18
  CLUS_5                         10                           29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(13Q34) MUTATED       16     13      5     11      1
  AMP PEAK 15(13Q34) WILD-TYPE     42     36     16     31     23
D15V10, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         16                           42
  CLUS_2                         13                           36
  CLUS_3                          5                           16
  CLUS_4                         11                           31
  CLUS_5                          1                           23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(15Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(15Q26.3) MUTATED       48      3     12     21
  AMP PEAK 16(15Q26.3) WILD-TYPE     47     57     27     42
D16V1, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                           48                             47
  CLUS_2                            3                             57
  CLUS_3                           12                             27
  CLUS_4                           21                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(15Q26.3) MUTATED       11     16     25     32
  AMP PEAK 16(15Q26.3) WILD-TYPE     43     40     47     43
D16V2, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                           11                             43
  CLUS_2                           16                             40
  CLUS_3                           25                             47
  CLUS_4                           32                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(15Q26.3) MUTATED       22     13     18     17
  AMP PEAK 16(15Q26.3) WILD-TYPE     36     32     43     39
D16V3, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                           22                             36
  CLUS_2                           13                             32
  CLUS_3                           18                             43
  CLUS_4                           17                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(15Q26.3) MUTATED       10     10     21     19      4      6
  AMP PEAK 16(15Q26.3) WILD-TYPE     14     25     28     49     18     16
D16V4, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                           10                             14
  CLUS_2                           10                             25
  CLUS_3                           21                             28
  CLUS_4                           19                             49
  CLUS_5                            4                             18
  CLUS_6                            6                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(15Q26.3) MUTATED       40     26     18
  AMP PEAK 16(15Q26.3) WILD-TYPE     74     51     46
D16V5, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                           40                             74
  CLUS_2                           26                             51
  CLUS_3                           18                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(15Q26.3) MUTATED       21      5     20     14     12      6
  AMP PEAK 16(15Q26.3) WILD-TYPE     26     16     29     32     18     23
                                vv
clus                             CLUS_7
  AMP PEAK 16(15Q26.3) MUTATED        6
  AMP PEAK 16(15Q26.3) WILD-TYPE     27
D16V6, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                           21                             26
  CLUS_2                            5                             16
  CLUS_3                           20                             29
  CLUS_4                           14                             32
  CLUS_5                           12                             18
  CLUS_6                            6                             23
  CLUS_7                            6                             27
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(15Q26.3) MUTATED       34     19     31
  AMP PEAK 16(15Q26.3) WILD-TYPE     71     31     69
D16V7, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                           34                             71
  CLUS_2                           19                             31
  CLUS_3                           31                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(15Q26.3) MUTATED       34      9     36      5
  AMP PEAK 16(15Q26.3) WILD-TYPE     48     28     78     17
D16V8, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                           34                             48
  CLUS_2                            9                             28
  CLUS_3                           36                             78
  CLUS_4                            5                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(15Q26.3) MUTATED       19     10     19      7     17
  AMP PEAK 16(15Q26.3) WILD-TYPE     39     17     28     16     22
D16V9, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                           19                             39
  CLUS_2                           10                             17
  CLUS_3                           19                             28
  CLUS_4                            7                             16
  CLUS_5                           17                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(15Q26.3) MUTATED       23     19      6     17      7
  AMP PEAK 16(15Q26.3) WILD-TYPE     35     30     15     25     17
D16V10, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                           23                             35
  CLUS_2                           19                             30
  CLUS_3                            6                             15
  CLUS_4                           17                             25
  CLUS_5                            7                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(17P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17P12) MUTATED       42      1     15     44
  AMP PEAK 17(17P12) WILD-TYPE     53     59     24     19
D17V1, multiclass
        clus
vv       AMP PEAK 17(17P12) MUTATED AMP PEAK 17(17P12) WILD-TYPE
  CLUS_1                         42                           53
  CLUS_2                          1                           59
  CLUS_3                         15                           24
  CLUS_4                         44                           19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17P12) MUTATED       13     11     34     44
  AMP PEAK 17(17P12) WILD-TYPE     41     45     38     31
D17V2, multiclass
        clus
vv       AMP PEAK 17(17P12) MUTATED AMP PEAK 17(17P12) WILD-TYPE
  CLUS_1                         13                           41
  CLUS_2                         11                           45
  CLUS_3                         34                           38
  CLUS_4                         44                           31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17P12) MUTATED       18     23     25     22
  AMP PEAK 17(17P12) WILD-TYPE     40     22     36     34
D17V3, multiclass
        clus
vv       AMP PEAK 17(17P12) MUTATED AMP PEAK 17(17P12) WILD-TYPE
  CLUS_1                         18                           40
  CLUS_2                         23                           22
  CLUS_3                         25                           36
  CLUS_4                         22                           34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(17P12) MUTATED       14      8     29     27      6      4
  AMP PEAK 17(17P12) WILD-TYPE     10     27     20     41     16     18
D17V4, multiclass
        clus
vv       AMP PEAK 17(17P12) MUTATED AMP PEAK 17(17P12) WILD-TYPE
  CLUS_1                         14                           10
  CLUS_2                          8                           27
  CLUS_3                         29                           20
  CLUS_4                         27                           41
  CLUS_5                          6                           16
  CLUS_6                          4                           18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(17P12) MUTATED       46     37     18
  AMP PEAK 17(17P12) WILD-TYPE     68     40     46
D17V5, multiclass
        clus
vv       AMP PEAK 17(17P12) MUTATED AMP PEAK 17(17P12) WILD-TYPE
  CLUS_1                         46                           68
  CLUS_2                         37                           40
  CLUS_3                         18                           46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 17(17P12) MUTATED       24      2     26     11     14     11     13
  AMP PEAK 17(17P12) WILD-TYPE     23     19     23     35     16     18     20
D17V6, multiclass
        clus
vv       AMP PEAK 17(17P12) MUTATED AMP PEAK 17(17P12) WILD-TYPE
  CLUS_1                         24                           23
  CLUS_2                          2                           19
  CLUS_3                         26                           23
  CLUS_4                         11                           35
  CLUS_5                         14                           16
  CLUS_6                         11                           18
  CLUS_7                         13                           20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(17P12) MUTATED       37     19     44
  AMP PEAK 17(17P12) WILD-TYPE     68     31     56
D17V7, multiclass
        clus
vv       AMP PEAK 17(17P12) MUTATED AMP PEAK 17(17P12) WILD-TYPE
  CLUS_1                         37                           68
  CLUS_2                         19                           31
  CLUS_3                         44                           56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17P12) MUTATED       32     17     50      1
  AMP PEAK 17(17P12) WILD-TYPE     50     20     64     21
D17V8, multiclass
        clus
vv       AMP PEAK 17(17P12) MUTATED AMP PEAK 17(17P12) WILD-TYPE
  CLUS_1                         32                           50
  CLUS_2                         17                           20
  CLUS_3                         50                           64
  CLUS_4                          1                           21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(17P12) MUTATED       18     10     25     11     16
  AMP PEAK 17(17P12) WILD-TYPE     40     17     22     12     23
D17V9, multiclass
        clus
vv       AMP PEAK 17(17P12) MUTATED AMP PEAK 17(17P12) WILD-TYPE
  CLUS_1                         18                           40
  CLUS_2                         10                           17
  CLUS_3                         25                           22
  CLUS_4                         11                           12
  CLUS_5                         16                           23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(17P12) MUTATED       24     25     11     18      2
  AMP PEAK 17(17P12) WILD-TYPE     34     24     10     24     22
D17V10, multiclass
        clus
vv       AMP PEAK 17(17P12) MUTATED AMP PEAK 17(17P12) WILD-TYPE
  CLUS_1                         24                           34
  CLUS_2                         25                           24
  CLUS_3                         11                           10
  CLUS_4                         18                           24
  CLUS_5                          2                           22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(17P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(17P11.2) MUTATED       46      1     13     44
  AMP PEAK 18(17P11.2) WILD-TYPE     49     59     26     19
D18V1, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                           46                             49
  CLUS_2                            1                             59
  CLUS_3                           13                             26
  CLUS_4                           44                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(17P11.2) MUTATED       15      9     31     49
  AMP PEAK 18(17P11.2) WILD-TYPE     39     47     41     26
D18V2, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                           15                             39
  CLUS_2                            9                             47
  CLUS_3                           31                             41
  CLUS_4                           49                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(17P11.2) MUTATED       19     24     24     23
  AMP PEAK 18(17P11.2) WILD-TYPE     39     21     37     33
D18V3, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                           19                             39
  CLUS_2                           24                             21
  CLUS_3                           24                             37
  CLUS_4                           23                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(17P11.2) MUTATED       15      8     31     25      6      5
  AMP PEAK 18(17P11.2) WILD-TYPE      9     27     18     43     16     17
D18V4, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                           15                              9
  CLUS_2                            8                             27
  CLUS_3                           31                             18
  CLUS_4                           25                             43
  CLUS_5                            6                             16
  CLUS_6                            5                             17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(17P11.2) MUTATED       52     34     17
  AMP PEAK 18(17P11.2) WILD-TYPE     62     43     47
D18V5, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                           52                             62
  CLUS_2                           34                             43
  CLUS_3                           17                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(17P11.2) MUTATED       24      5     24     10     15     10
  AMP PEAK 18(17P11.2) WILD-TYPE     23     16     25     36     15     19
                                vv
clus                             CLUS_7
  AMP PEAK 18(17P11.2) MUTATED       15
  AMP PEAK 18(17P11.2) WILD-TYPE     18
D18V6, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                           24                             23
  CLUS_2                            5                             16
  CLUS_3                           24                             25
  CLUS_4                           10                             36
  CLUS_5                           15                             15
  CLUS_6                           10                             19
  CLUS_7                           15                             18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(17P11.2) MUTATED       39     22     41
  AMP PEAK 18(17P11.2) WILD-TYPE     66     28     59
D18V7, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                           39                             66
  CLUS_2                           22                             28
  CLUS_3                           41                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(17P11.2) MUTATED       35     16     50      1
  AMP PEAK 18(17P11.2) WILD-TYPE     47     21     64     21
D18V8, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                           35                             47
  CLUS_2                           16                             21
  CLUS_3                           50                             64
  CLUS_4                            1                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(17P11.2) MUTATED       18     12     22     11     20
  AMP PEAK 18(17P11.2) WILD-TYPE     40     15     25     12     19
D18V9, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                           18                             40
  CLUS_2                           12                             15
  CLUS_3                           22                             25
  CLUS_4                           11                             12
  CLUS_5                           20                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(17P11.2) MUTATED       24     22     13     21      3
  AMP PEAK 18(17P11.2) WILD-TYPE     34     27      8     21     21
D18V10, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                           24                             34
  CLUS_2                           22                             27
  CLUS_3                           13                              8
  CLUS_4                           21                             21
  CLUS_5                            3                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(17Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17Q24.3) MUTATED       36      2     13     28
  AMP PEAK 19(17Q24.3) WILD-TYPE     59     58     26     35
D19V1, multiclass
        clus
vv       AMP PEAK 19(17Q24.3) MUTATED AMP PEAK 19(17Q24.3) WILD-TYPE
  CLUS_1                           36                             59
  CLUS_2                            2                             58
  CLUS_3                           13                             26
  CLUS_4                           28                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17Q24.3) MUTATED       14     13     16     36
  AMP PEAK 19(17Q24.3) WILD-TYPE     40     43     56     39
D19V2, multiclass
        clus
vv       AMP PEAK 19(17Q24.3) MUTATED AMP PEAK 19(17Q24.3) WILD-TYPE
  CLUS_1                           14                             40
  CLUS_2                           13                             43
  CLUS_3                           16                             56
  CLUS_4                           36                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17Q24.3) MUTATED       17     19     11     21
  AMP PEAK 19(17Q24.3) WILD-TYPE     41     26     50     35
D19V3, multiclass
        clus
vv       AMP PEAK 19(17Q24.3) MUTATED AMP PEAK 19(17Q24.3) WILD-TYPE
  CLUS_1                           17                             41
  CLUS_2                           19                             26
  CLUS_3                           11                             50
  CLUS_4                           21                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(17Q24.3) MUTATED       14      7     19     12      7      9
  AMP PEAK 19(17Q24.3) WILD-TYPE     10     28     30     56     15     13
D19V4, multiclass
        clus
vv       AMP PEAK 19(17Q24.3) MUTATED AMP PEAK 19(17Q24.3) WILD-TYPE
  CLUS_1                           14                             10
  CLUS_2                            7                             28
  CLUS_3                           19                             30
  CLUS_4                           12                             56
  CLUS_5                            7                             15
  CLUS_6                            9                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q24.3) MUTATED       38     18     22
  AMP PEAK 19(17Q24.3) WILD-TYPE     76     59     42
D19V5, multiclass
        clus
vv       AMP PEAK 19(17Q24.3) MUTATED AMP PEAK 19(17Q24.3) WILD-TYPE
  CLUS_1                           38                             76
  CLUS_2                           18                             59
  CLUS_3                           22                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(17Q24.3) MUTATED       17      4      5     15     13     13
  AMP PEAK 19(17Q24.3) WILD-TYPE     30     17     44     31     17     16
                                vv
clus                             CLUS_7
  AMP PEAK 19(17Q24.3) MUTATED       11
  AMP PEAK 19(17Q24.3) WILD-TYPE     22
D19V6, multiclass
        clus
vv       AMP PEAK 19(17Q24.3) MUTATED AMP PEAK 19(17Q24.3) WILD-TYPE
  CLUS_1                           17                             30
  CLUS_2                            4                             17
  CLUS_3                            5                             44
  CLUS_4                           15                             31
  CLUS_5                           13                             17
  CLUS_6                           13                             16
  CLUS_7                           11                             22
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q24.3) MUTATED       32     21     25
  AMP PEAK 19(17Q24.3) WILD-TYPE     73     29     75
D19V7, multiclass
        clus
vv       AMP PEAK 19(17Q24.3) MUTATED AMP PEAK 19(17Q24.3) WILD-TYPE
  CLUS_1                           32                             73
  CLUS_2                           21                             29
  CLUS_3                           25                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17Q24.3) MUTATED       28     16     29      5
  AMP PEAK 19(17Q24.3) WILD-TYPE     54     21     85     17
D19V8, multiclass
        clus
vv       AMP PEAK 19(17Q24.3) MUTATED AMP PEAK 19(17Q24.3) WILD-TYPE
  CLUS_1                           28                             54
  CLUS_2                           16                             21
  CLUS_3                           29                             85
  CLUS_4                            5                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(17Q24.3) MUTATED       17     10     14     11     16
  AMP PEAK 19(17Q24.3) WILD-TYPE     41     17     33     12     23
D19V9, multiclass
        clus
vv       AMP PEAK 19(17Q24.3) MUTATED AMP PEAK 19(17Q24.3) WILD-TYPE
  CLUS_1                           17                             41
  CLUS_2                           10                             17
  CLUS_3                           14                             33
  CLUS_4                           11                             12
  CLUS_5                           16                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(17Q24.3) MUTATED       17     14     10     21      6
  AMP PEAK 19(17Q24.3) WILD-TYPE     41     35     11     21     18
D19V10, multiclass
        clus
vv       AMP PEAK 19(17Q24.3) MUTATED AMP PEAK 19(17Q24.3) WILD-TYPE
  CLUS_1                           17                             41
  CLUS_2                           14                             35
  CLUS_3                           10                             11
  CLUS_4                           21                             21
  CLUS_5                            6                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(19P13.2) MUTATED       62      6     14     26
  AMP PEAK 20(19P13.2) WILD-TYPE     33     54     25     37
D20V1, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           62                             33
  CLUS_2                            6                             54
  CLUS_3                           14                             25
  CLUS_4                           26                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(19P13.2) MUTATED       19     20     31     38
  AMP PEAK 20(19P13.2) WILD-TYPE     35     36     41     37
D20V2, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           19                             35
  CLUS_2                           20                             36
  CLUS_3                           31                             41
  CLUS_4                           38                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(19P13.2) MUTATED       31     17     24     21
  AMP PEAK 20(19P13.2) WILD-TYPE     27     28     37     35
D20V3, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           31                             27
  CLUS_2                           17                             28
  CLUS_3                           24                             37
  CLUS_4                           21                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(19P13.2) MUTATED       17     12     25     28      8      3
  AMP PEAK 20(19P13.2) WILD-TYPE      7     23     24     40     14     19
D20V4, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           17                              7
  CLUS_2                           12                             23
  CLUS_3                           25                             24
  CLUS_4                           28                             40
  CLUS_5                            8                             14
  CLUS_6                            3                             19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(19P13.2) MUTATED       53     34     21
  AMP PEAK 20(19P13.2) WILD-TYPE     61     43     43
D20V5, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           53                             61
  CLUS_2                           34                             43
  CLUS_3                           21                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(19P13.2) MUTATED       30      9     21     17     12     13
  AMP PEAK 20(19P13.2) WILD-TYPE     17     12     28     29     18     16
                                vv
clus                             CLUS_7
  AMP PEAK 20(19P13.2) MUTATED        6
  AMP PEAK 20(19P13.2) WILD-TYPE     27
D20V6, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           30                             17
  CLUS_2                            9                             12
  CLUS_3                           21                             28
  CLUS_4                           17                             29
  CLUS_5                           12                             18
  CLUS_6                           13                             16
  CLUS_7                            6                             27
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(19P13.2) MUTATED       43     20     44
  AMP PEAK 20(19P13.2) WILD-TYPE     62     30     56
D20V7, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           43                             62
  CLUS_2                           20                             30
  CLUS_3                           44                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(19P13.2) MUTATED       37     16     49      5
  AMP PEAK 20(19P13.2) WILD-TYPE     45     21     65     17
D20V8, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           37                             45
  CLUS_2                           16                             21
  CLUS_3                           49                             65
  CLUS_4                            5                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(19P13.2) MUTATED       24     14     19      9     14
  AMP PEAK 20(19P13.2) WILD-TYPE     34     13     28     14     25
D20V9, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           24                             34
  CLUS_2                           14                             13
  CLUS_3                           19                             28
  CLUS_4                            9                             14
  CLUS_5                           14                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(19P13.2) MUTATED       29     19      8     19      5
  AMP PEAK 20(19P13.2) WILD-TYPE     29     30     13     23     19
D20V10, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           29                             29
  CLUS_2                           19                             30
  CLUS_3                            8                             13
  CLUS_4                           19                             23
  CLUS_5                            5                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(19Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(19Q12) MUTATED       50      3      5     35
  AMP PEAK 21(19Q12) WILD-TYPE     45     57     34     28
D21V1, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         50                           45
  CLUS_2                          3                           57
  CLUS_3                          5                           34
  CLUS_4                         35                           28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(19Q12) MUTATED       15     15     18     45
  AMP PEAK 21(19Q12) WILD-TYPE     39     41     54     30
D21V2, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         15                           39
  CLUS_2                         15                           41
  CLUS_3                         18                           54
  CLUS_4                         45                           30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(19Q12) MUTATED       25     24     17     20
  AMP PEAK 21(19Q12) WILD-TYPE     33     21     44     36
D21V3, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         25                           33
  CLUS_2                         24                           21
  CLUS_3                         17                           44
  CLUS_4                         20                           36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(19Q12) MUTATED       18     11     25     16      8      8
  AMP PEAK 21(19Q12) WILD-TYPE      6     24     24     52     14     14
D21V4, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         18                            6
  CLUS_2                         11                           24
  CLUS_3                         25                           24
  CLUS_4                         16                           52
  CLUS_5                          8                           14
  CLUS_6                          8                           14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(19Q12) MUTATED       50     20     23
  AMP PEAK 21(19Q12) WILD-TYPE     64     57     41
D21V5, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         50                           64
  CLUS_2                         20                           57
  CLUS_3                         23                           41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 21(19Q12) MUTATED       28      6     13     15     13      6     12
  AMP PEAK 21(19Q12) WILD-TYPE     19     15     36     31     17     23     21
D21V6, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         28                           19
  CLUS_2                          6                           15
  CLUS_3                         13                           36
  CLUS_4                         15                           31
  CLUS_5                         13                           17
  CLUS_6                          6                           23
  CLUS_7                         12                           21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(19Q12) MUTATED       42     19     32
  AMP PEAK 21(19Q12) WILD-TYPE     63     31     68
D21V7, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         42                           63
  CLUS_2                         19                           31
  CLUS_3                         32                           68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(19Q12) MUTATED       38     14     39      2
  AMP PEAK 21(19Q12) WILD-TYPE     44     23     75     20
D21V8, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         38                           44
  CLUS_2                         14                           23
  CLUS_3                         39                           75
  CLUS_4                          2                           20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(19Q12) MUTATED       21     14     11     13     15
  AMP PEAK 21(19Q12) WILD-TYPE     37     13     36     10     24
D21V9, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         21                           37
  CLUS_2                         14                           13
  CLUS_3                         11                           36
  CLUS_4                         13                           10
  CLUS_5                         15                           24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(19Q12) MUTATED       29     11     11     19      4
  AMP PEAK 21(19Q12) WILD-TYPE     29     38     10     23     20
D21V10, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         29                           29
  CLUS_2                         11                           38
  CLUS_3                         11                           10
  CLUS_4                         19                           23
  CLUS_5                          4                           20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(20Q13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20Q13.33) MUTATED       61      3     11     23
  AMP PEAK 22(20Q13.33) WILD-TYPE     34     57     28     40
D22V1, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            61                              34
  CLUS_2                             3                              57
  CLUS_3                            11                              28
  CLUS_4                            23                              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20Q13.33) MUTATED       16     19     16     47
  AMP PEAK 22(20Q13.33) WILD-TYPE     38     37     56     28
D22V2, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            16                              38
  CLUS_2                            19                              37
  CLUS_3                            16                              56
  CLUS_4                            47                              28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20Q13.33) MUTATED       25     25     15     28
  AMP PEAK 22(20Q13.33) WILD-TYPE     33     20     46     28
D22V3, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            25                              33
  CLUS_2                            25                              20
  CLUS_3                            15                              46
  CLUS_4                            28                              28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(20Q13.33) MUTATED       14     14     32     15      9      9
  AMP PEAK 22(20Q13.33) WILD-TYPE     10     21     17     53     13     13
D22V4, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            14                              10
  CLUS_2                            14                              21
  CLUS_3                            32                              17
  CLUS_4                            15                              53
  CLUS_5                             9                              13
  CLUS_6                             9                              13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20Q13.33) MUTATED       54     17     26
  AMP PEAK 22(20Q13.33) WILD-TYPE     60     60     38
D22V5, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            54                              60
  CLUS_2                            17                              60
  CLUS_3                            26                              38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(20Q13.33) MUTATED       25      7     10     18     18      6
  AMP PEAK 22(20Q13.33) WILD-TYPE     22     14     39     28     12     23
                                 vv
clus                              CLUS_7
  AMP PEAK 22(20Q13.33) MUTATED       13
  AMP PEAK 22(20Q13.33) WILD-TYPE     20
D22V6, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            25                              22
  CLUS_2                             7                              14
  CLUS_3                            10                              39
  CLUS_4                            18                              28
  CLUS_5                            18                              12
  CLUS_6                             6                              23
  CLUS_7                            13                              20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20Q13.33) MUTATED       42     27     29
  AMP PEAK 22(20Q13.33) WILD-TYPE     63     23     71
D22V7, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            42                              63
  CLUS_2                            27                              23
  CLUS_3                            29                              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20Q13.33) MUTATED       43     15     38      2
  AMP PEAK 22(20Q13.33) WILD-TYPE     39     22     76     20
D22V8, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            43                              39
  CLUS_2                            15                              22
  CLUS_3                            38                              76
  CLUS_4                             2                              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(20Q13.33) MUTATED       19     15     10     12     25
  AMP PEAK 22(20Q13.33) WILD-TYPE     39     12     37     11     14
D22V9, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            19                              39
  CLUS_2                            15                              12
  CLUS_3                            10                              37
  CLUS_4                            12                              11
  CLUS_5                            25                              14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(20Q13.33) MUTATED       26     12     11     27      5
  AMP PEAK 22(20Q13.33) WILD-TYPE     32     37     10     15     19
D22V10, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            26                              32
  CLUS_2                            12                              37
  CLUS_3                            11                              10
  CLUS_4                            27                              15
  CLUS_5                             5                              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(21Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(21Q21.1) MUTATED       37      4      5     27
  AMP PEAK 23(21Q21.1) WILD-TYPE     58     56     34     36
D23V1, multiclass
        clus
vv       AMP PEAK 23(21Q21.1) MUTATED AMP PEAK 23(21Q21.1) WILD-TYPE
  CLUS_1                           37                             58
  CLUS_2                            4                             56
  CLUS_3                            5                             34
  CLUS_4                           27                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(21Q21.1) MUTATED        6     13     17     37
  AMP PEAK 23(21Q21.1) WILD-TYPE     48     43     55     38
D23V2, multiclass
        clus
vv       AMP PEAK 23(21Q21.1) MUTATED AMP PEAK 23(21Q21.1) WILD-TYPE
  CLUS_1                            6                             48
  CLUS_2                           13                             43
  CLUS_3                           17                             55
  CLUS_4                           37                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(21Q21.1) MUTATED       19     18     13     17
  AMP PEAK 23(21Q21.1) WILD-TYPE     39     27     48     39
D23V3, multiclass
        clus
vv       AMP PEAK 23(21Q21.1) MUTATED AMP PEAK 23(21Q21.1) WILD-TYPE
  CLUS_1                           19                             39
  CLUS_2                           18                             27
  CLUS_3                           13                             48
  CLUS_4                           17                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(21Q21.1) MUTATED       11      8     19     15      8      6
  AMP PEAK 23(21Q21.1) WILD-TYPE     13     27     30     53     14     16
D23V4, multiclass
        clus
vv       AMP PEAK 23(21Q21.1) MUTATED AMP PEAK 23(21Q21.1) WILD-TYPE
  CLUS_1                           11                             13
  CLUS_2                            8                             27
  CLUS_3                           19                             30
  CLUS_4                           15                             53
  CLUS_5                            8                             14
  CLUS_6                            6                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(21Q21.1) MUTATED       40     17     16
  AMP PEAK 23(21Q21.1) WILD-TYPE     74     60     48
D23V5, multiclass
        clus
vv       AMP PEAK 23(21Q21.1) MUTATED AMP PEAK 23(21Q21.1) WILD-TYPE
  CLUS_1                           40                             74
  CLUS_2                           17                             60
  CLUS_3                           16                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(21Q21.1) MUTATED       19      5     11     11     12      6
  AMP PEAK 23(21Q21.1) WILD-TYPE     28     16     38     35     18     23
                                vv
clus                             CLUS_7
  AMP PEAK 23(21Q21.1) MUTATED        9
  AMP PEAK 23(21Q21.1) WILD-TYPE     24
D23V6, multiclass
        clus
vv       AMP PEAK 23(21Q21.1) MUTATED AMP PEAK 23(21Q21.1) WILD-TYPE
  CLUS_1                           19                             28
  CLUS_2                            5                             16
  CLUS_3                           11                             38
  CLUS_4                           11                             35
  CLUS_5                           12                             18
  CLUS_6                            6                             23
  CLUS_7                            9                             24
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(21Q21.1) MUTATED       33     13     26
  AMP PEAK 23(21Q21.1) WILD-TYPE     72     37     74
D23V7, multiclass
        clus
vv       AMP PEAK 23(21Q21.1) MUTATED AMP PEAK 23(21Q21.1) WILD-TYPE
  CLUS_1                           33                             72
  CLUS_2                           13                             37
  CLUS_3                           26                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(21Q21.1) MUTATED       30     10     29      3
  AMP PEAK 23(21Q21.1) WILD-TYPE     52     27     85     19
D23V8, multiclass
        clus
vv       AMP PEAK 23(21Q21.1) MUTATED AMP PEAK 23(21Q21.1) WILD-TYPE
  CLUS_1                           30                             52
  CLUS_2                           10                             27
  CLUS_3                           29                             85
  CLUS_4                            3                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(21Q21.1) MUTATED       13     11     12      7     15
  AMP PEAK 23(21Q21.1) WILD-TYPE     45     16     35     16     24
D23V9, multiclass
        clus
vv       AMP PEAK 23(21Q21.1) MUTATED AMP PEAK 23(21Q21.1) WILD-TYPE
  CLUS_1                           13                             45
  CLUS_2                           11                             16
  CLUS_3                           12                             35
  CLUS_4                            7                             16
  CLUS_5                           15                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(21Q21.1) MUTATED       18     12      9     16      3
  AMP PEAK 23(21Q21.1) WILD-TYPE     40     37     12     26     21
D23V10, multiclass
        clus
vv       AMP PEAK 23(21Q21.1) MUTATED AMP PEAK 23(21Q21.1) WILD-TYPE
  CLUS_1                           18                             40
  CLUS_2                           12                             37
  CLUS_3                            9                             12
  CLUS_4                           16                             26
  CLUS_5                            3                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(XP21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(XP21.2) MUTATED       52      6      8     31
  AMP PEAK 24(XP21.2) WILD-TYPE     43     54     31     32
D24V1, multiclass
        clus
vv       AMP PEAK 24(XP21.2) MUTATED AMP PEAK 24(XP21.2) WILD-TYPE
  CLUS_1                          52                            43
  CLUS_2                           6                            54
  CLUS_3                           8                            31
  CLUS_4                          31                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(XP21.2) MUTATED       15     17     27     38
  AMP PEAK 24(XP21.2) WILD-TYPE     39     39     45     37
D24V2, multiclass
        clus
vv       AMP PEAK 24(XP21.2) MUTATED AMP PEAK 24(XP21.2) WILD-TYPE
  CLUS_1                          15                            39
  CLUS_2                          17                            39
  CLUS_3                          27                            45
  CLUS_4                          38                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(XP21.2) MUTATED       24     22     20     19
  AMP PEAK 24(XP21.2) WILD-TYPE     34     23     41     37
D24V3, multiclass
        clus
vv       AMP PEAK 24(XP21.2) MUTATED AMP PEAK 24(XP21.2) WILD-TYPE
  CLUS_1                          24                            34
  CLUS_2                          22                            23
  CLUS_3                          20                            41
  CLUS_4                          19                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(XP21.2) MUTATED       13     11     26     23      7      5
  AMP PEAK 24(XP21.2) WILD-TYPE     11     24     23     45     15     17
D24V4, multiclass
        clus
vv       AMP PEAK 24(XP21.2) MUTATED AMP PEAK 24(XP21.2) WILD-TYPE
  CLUS_1                          13                            11
  CLUS_2                          11                            24
  CLUS_3                          26                            23
  CLUS_4                          23                            45
  CLUS_5                           7                            15
  CLUS_6                           5                            17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(XP21.2) MUTATED       48     29     20
  AMP PEAK 24(XP21.2) WILD-TYPE     66     48     44
D24V5, multiclass
        clus
vv       AMP PEAK 24(XP21.2) MUTATED AMP PEAK 24(XP21.2) WILD-TYPE
  CLUS_1                          48                            66
  CLUS_2                          29                            48
  CLUS_3                          20                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(XP21.2) MUTATED       26      5     21     13     13      7
  AMP PEAK 24(XP21.2) WILD-TYPE     21     16     28     33     17     22
                               vv
clus                            CLUS_7
  AMP PEAK 24(XP21.2) MUTATED       12
  AMP PEAK 24(XP21.2) WILD-TYPE     21
D24V6, multiclass
        clus
vv       AMP PEAK 24(XP21.2) MUTATED AMP PEAK 24(XP21.2) WILD-TYPE
  CLUS_1                          26                            21
  CLUS_2                           5                            16
  CLUS_3                          21                            28
  CLUS_4                          13                            33
  CLUS_5                          13                            17
  CLUS_6                           7                            22
  CLUS_7                          12                            21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(XP21.2) MUTATED       37     21     37
  AMP PEAK 24(XP21.2) WILD-TYPE     68     29     63
D24V7, multiclass
        clus
vv       AMP PEAK 24(XP21.2) MUTATED AMP PEAK 24(XP21.2) WILD-TYPE
  CLUS_1                          37                            68
  CLUS_2                          21                            29
  CLUS_3                          37                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(XP21.2) MUTATED       36     11     45      3
  AMP PEAK 24(XP21.2) WILD-TYPE     46     26     69     19
D24V8, multiclass
        clus
vv       AMP PEAK 24(XP21.2) MUTATED AMP PEAK 24(XP21.2) WILD-TYPE
  CLUS_1                          36                            46
  CLUS_2                          11                            26
  CLUS_3                          45                            69
  CLUS_4                           3                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(XP21.2) MUTATED       18     15     17     10     17
  AMP PEAK 24(XP21.2) WILD-TYPE     40     12     30     13     22
D24V9, multiclass
        clus
vv       AMP PEAK 24(XP21.2) MUTATED AMP PEAK 24(XP21.2) WILD-TYPE
  CLUS_1                          18                            40
  CLUS_2                          15                            12
  CLUS_3                          17                            30
  CLUS_4                          10                            13
  CLUS_5                          17                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(XP21.2) MUTATED       27     17     11     20      2
  AMP PEAK 24(XP21.2) WILD-TYPE     31     32     10     22     22
D24V10, multiclass
        clus
vv       AMP PEAK 24(XP21.2) MUTATED AMP PEAK 24(XP21.2) WILD-TYPE
  CLUS_1                          27                            31
  CLUS_2                          17                            32
  CLUS_3                          11                            10
  CLUS_4                          20                            22
  CLUS_5                           2                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(XQ21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(XQ21.1) MUTATED       33      3      3      7
  AMP PEAK 25(XQ21.1) WILD-TYPE     62     57     36     56
D25V1, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                          33                            62
  CLUS_2                           3                            57
  CLUS_3                           3                            36
  CLUS_4                           7                            56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(XQ21.1) MUTATED        6     10      8     22
  AMP PEAK 25(XQ21.1) WILD-TYPE     48     46     64     53
D25V2, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                           6                            48
  CLUS_2                          10                            46
  CLUS_3                           8                            64
  CLUS_4                          22                            53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(XQ21.1) MUTATED       15     12      5     10
  AMP PEAK 25(XQ21.1) WILD-TYPE     43     33     56     46
D25V3, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                          15                            43
  CLUS_2                          12                            33
  CLUS_3                           5                            56
  CLUS_4                          10                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(XQ21.1) MUTATED        6      8     13      8      3      4
  AMP PEAK 25(XQ21.1) WILD-TYPE     18     27     36     60     19     18
D25V4, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                           6                            18
  CLUS_2                           8                            27
  CLUS_3                          13                            36
  CLUS_4                           8                            60
  CLUS_5                           3                            19
  CLUS_6                           4                            18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(XQ21.1) MUTATED       28      8     10
  AMP PEAK 25(XQ21.1) WILD-TYPE     86     69     54
D25V5, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                          28                            86
  CLUS_2                           8                            69
  CLUS_3                          10                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(XQ21.1) MUTATED       16      2      3      7     10      5
  AMP PEAK 25(XQ21.1) WILD-TYPE     31     19     46     39     20     24
                               vv
clus                            CLUS_7
  AMP PEAK 25(XQ21.1) MUTATED        3
  AMP PEAK 25(XQ21.1) WILD-TYPE     30
D25V6, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                          16                            31
  CLUS_2                           2                            19
  CLUS_3                           3                            46
  CLUS_4                           7                            39
  CLUS_5                          10                            20
  CLUS_6                           5                            24
  CLUS_7                           3                            30
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(XQ21.1) MUTATED       19     15     11
  AMP PEAK 25(XQ21.1) WILD-TYPE     86     35     89
D25V7, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                          19                            86
  CLUS_2                          15                            35
  CLUS_3                          11                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(XQ21.1) MUTATED       19      7     16      3
  AMP PEAK 25(XQ21.1) WILD-TYPE     63     30     98     19
D25V8, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                          19                            63
  CLUS_2                           7                            30
  CLUS_3                          16                            98
  CLUS_4                           3                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(XQ21.1) MUTATED       11     10      4      6      7
  AMP PEAK 25(XQ21.1) WILD-TYPE     47     17     43     17     32
D25V9, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                          11                            47
  CLUS_2                          10                            17
  CLUS_3                           4                            43
  CLUS_4                           6                            17
  CLUS_5                           7                            32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(XQ21.1) MUTATED       15      6      6      8      3
  AMP PEAK 25(XQ21.1) WILD-TYPE     43     43     15     34     21
D25V10, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                          15                            43
  CLUS_2                           6                            43
  CLUS_3                           6                            15
  CLUS_4                           8                            34
  CLUS_5                           3                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK  1(1P36.32) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED       21      4     26     18
  DEL PEAK  1(1P36.32) WILD-TYPE     74     56     13     45
D26V1, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           21                             74
  CLUS_2                            4                             56
  CLUS_3                           26                             13
  CLUS_4                           18                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED        3     11     43     12
  DEL PEAK  1(1P36.32) WILD-TYPE     51     45     29     63
D26V2, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            3                             51
  CLUS_2                           11                             45
  CLUS_3                           43                             29
  CLUS_4                           12                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED       10      5     37      4
  DEL PEAK  1(1P36.32) WILD-TYPE     48     40     24     52
D26V3, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           10                             48
  CLUS_2                            5                             40
  CLUS_3                           37                             24
  CLUS_4                            4                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.32) MUTATED        6      2      6     37      1      4
  DEL PEAK  1(1P36.32) WILD-TYPE     18     33     43     31     21     18
D26V4, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            6                             18
  CLUS_2                            2                             33
  CLUS_3                            6                             43
  CLUS_4                           37                             31
  CLUS_5                            1                             21
  CLUS_6                            4                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       13     45     10
  DEL PEAK  1(1P36.32) WILD-TYPE    101     32     54
D26V5, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           13                            101
  CLUS_2                           45                             32
  CLUS_3                           10                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.32) MUTATED        8      1     30      7      4     15
  DEL PEAK  1(1P36.32) WILD-TYPE     39     20     19     39     26     14
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.32) MUTATED        3
  DEL PEAK  1(1P36.32) WILD-TYPE     30
D26V6, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            8                             39
  CLUS_2                            1                             20
  CLUS_3                           30                             19
  CLUS_4                            7                             39
  CLUS_5                            4                             26
  CLUS_6                           15                             14
  CLUS_7                            3                             30
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       14      6     49
  DEL PEAK  1(1P36.32) WILD-TYPE     91     44     51
D26V7, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           14                             91
  CLUS_2                            6                             44
  CLUS_3                           49                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED       11      3     51      4
  DEL PEAK  1(1P36.32) WILD-TYPE     71     34     63     18
D26V8, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           11                             71
  CLUS_2                            3                             34
  CLUS_3                           51                             63
  CLUS_4                            4                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.32) MUTATED        8      5     24      8      4
  DEL PEAK  1(1P36.32) WILD-TYPE     50     22     23     15     35
D26V9, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            8                             50
  CLUS_2                            5                             22
  CLUS_3                           24                             23
  CLUS_4                            8                             15
  CLUS_5                            4                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.32) MUTATED        9     26      4      5      5
  DEL PEAK  1(1P36.32) WILD-TYPE     49     23     17     37     19
D26V10, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            9                             49
  CLUS_2                           26                             23
  CLUS_3                            4                             17
  CLUS_4                            5                             37
  CLUS_5                            5                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK  2(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q44) MUTATED       50      1      5     24
  DEL PEAK  2(1Q44) WILD-TYPE     45     59     34     39
D27V1, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        50                          45
  CLUS_2                         1                          59
  CLUS_3                         5                          34
  CLUS_4                        24                          39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q44) MUTATED       20     13     12     35
  DEL PEAK  2(1Q44) WILD-TYPE     34     43     60     40
D27V2, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        20                          34
  CLUS_2                        13                          43
  CLUS_3                        12                          60
  CLUS_4                        35                          40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q44) MUTATED       21     19     12     20
  DEL PEAK  2(1Q44) WILD-TYPE     37     26     49     36
D27V3, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        21                          37
  CLUS_2                        19                          26
  CLUS_3                        12                          49
  CLUS_4                        20                          36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1Q44) MUTATED       15     10     25     11      6      5
  DEL PEAK  2(1Q44) WILD-TYPE      9     25     24     57     16     17
D27V4, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        15                           9
  CLUS_2                        10                          25
  CLUS_3                        25                          24
  CLUS_4                        11                          57
  CLUS_5                         6                          16
  CLUS_6                         5                          17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q44) MUTATED       49     14     17
  DEL PEAK  2(1Q44) WILD-TYPE     65     63     47
D27V5, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        49                          65
  CLUS_2                        14                          63
  CLUS_3                        17                          47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  2(1Q44) MUTATED       27      6     10     10     12      3     12
  DEL PEAK  2(1Q44) WILD-TYPE     20     15     39     36     18     26     21
D27V6, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        27                          20
  CLUS_2                         6                          15
  CLUS_3                        10                          39
  CLUS_4                        10                          36
  CLUS_5                        12                          18
  CLUS_6                         3                          26
  CLUS_7                        12                          21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q44) MUTATED       34     25     21
  DEL PEAK  2(1Q44) WILD-TYPE     71     25     79
D27V7, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        34                          71
  CLUS_2                        25                          25
  CLUS_3                        21                          79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q44) MUTATED       36     11     31      2
  DEL PEAK  2(1Q44) WILD-TYPE     46     26     83     20
D27V8, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        36                          46
  CLUS_2                        11                          26
  CLUS_3                        31                          83
  CLUS_4                         2                          20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1Q44) MUTATED       18     18      9      7     16
  DEL PEAK  2(1Q44) WILD-TYPE     40      9     38     16     23
D27V9, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        18                          40
  CLUS_2                        18                           9
  CLUS_3                         9                          38
  CLUS_4                         7                          16
  CLUS_5                        16                          23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1Q44) MUTATED       26     10     10     20      2
  DEL PEAK  2(1Q44) WILD-TYPE     32     39     11     22     22
D27V10, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        26                          32
  CLUS_2                        10                          39
  CLUS_3                        10                          11
  CLUS_4                        20                          22
  CLUS_5                         2                          22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK  3(2P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED       39      2     17     36
  DEL PEAK  3(2P25.3) WILD-TYPE     56     58     22     27
D28V1, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          39                            56
  CLUS_2                           2                            58
  CLUS_3                          17                            22
  CLUS_4                          36                            27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED       12     14     40     28
  DEL PEAK  3(2P25.3) WILD-TYPE     42     42     32     47
D28V2, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          12                            42
  CLUS_2                          14                            42
  CLUS_3                          40                            32
  CLUS_4                          28                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED       16     17     30     17
  DEL PEAK  3(2P25.3) WILD-TYPE     42     28     31     39
D28V3, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          16                            42
  CLUS_2                          17                            28
  CLUS_3                          30                            31
  CLUS_4                          17                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2P25.3) MUTATED       12      7     18     34      6      3
  DEL PEAK  3(2P25.3) WILD-TYPE     12     28     31     34     16     19
D28V4, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          12                            12
  CLUS_2                           7                            28
  CLUS_3                          18                            31
  CLUS_4                          34                            34
  CLUS_5                           6                            16
  CLUS_6                           3                            19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       41     42     10
  DEL PEAK  3(2P25.3) WILD-TYPE     73     35     54
D28V5, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          41                            73
  CLUS_2                          42                            35
  CLUS_3                          10                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2P25.3) MUTATED       20      5     28      8      9     14
  DEL PEAK  3(2P25.3) WILD-TYPE     27     16     21     38     21     15
                               vv
clus                            CLUS_7
  DEL PEAK  3(2P25.3) MUTATED        9
  DEL PEAK  3(2P25.3) WILD-TYPE     24
D28V6, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          20                            27
  CLUS_2                           5                            16
  CLUS_3                          28                            21
  CLUS_4                           8                            38
  CLUS_5                           9                            21
  CLUS_6                          14                            15
  CLUS_7                           9                            24
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       23     22     48
  DEL PEAK  3(2P25.3) WILD-TYPE     82     28     52
D28V7, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          23                            82
  CLUS_2                          22                            28
  CLUS_3                          48                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED       27     10     56      0
  DEL PEAK  3(2P25.3) WILD-TYPE     55     27     58     22
D28V8, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          27                            55
  CLUS_2                          10                            27
  CLUS_3                          56                            58
  CLUS_4                           0                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2P25.3) MUTATED       12     13     27      7     14
  DEL PEAK  3(2P25.3) WILD-TYPE     46     14     20     16     25
D28V9, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          12                            46
  CLUS_2                          13                            14
  CLUS_3                          27                            20
  CLUS_4                           7                            16
  CLUS_5                          14                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2P25.3) MUTATED       17     29      9     17      1
  DEL PEAK  3(2P25.3) WILD-TYPE     41     20     12     25     23
D28V10, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          17                            41
  CLUS_2                          29                            20
  CLUS_3                           9                            12
  CLUS_4                          17                            25
  CLUS_5                           1                            23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK  4(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED       53      3      6     46
  DEL PEAK  4(2Q37.3) WILD-TYPE     42     57     33     17
D29V1, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          53                            42
  CLUS_2                           3                            57
  CLUS_3                           6                            33
  CLUS_4                          46                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED       16     16     33     43
  DEL PEAK  4(2Q37.3) WILD-TYPE     38     40     39     32
D29V2, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          16                            38
  CLUS_2                          16                            40
  CLUS_3                          33                            39
  CLUS_4                          43                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED       20     26     28     21
  DEL PEAK  4(2Q37.3) WILD-TYPE     38     19     33     35
D29V3, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          20                            38
  CLUS_2                          26                            19
  CLUS_3                          28                            33
  CLUS_4                          21                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED       15     11     27     29      7      6
  DEL PEAK  4(2Q37.3) WILD-TYPE      9     24     22     39     15     16
D29V4, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          15                             9
  CLUS_2                          11                            24
  CLUS_3                          27                            22
  CLUS_4                          29                            39
  CLUS_5                           7                            15
  CLUS_6                           6                            16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       53     35     18
  DEL PEAK  4(2Q37.3) WILD-TYPE     61     42     46
D29V5, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          53                            61
  CLUS_2                          35                            42
  CLUS_3                          18                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED       27      6     16     10     13     19
  DEL PEAK  4(2Q37.3) WILD-TYPE     20     15     33     36     17     10
                               vv
clus                            CLUS_7
  DEL PEAK  4(2Q37.3) MUTATED       15
  DEL PEAK  4(2Q37.3) WILD-TYPE     18
D29V6, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          27                            20
  CLUS_2                           6                            15
  CLUS_3                          16                            33
  CLUS_4                          10                            36
  CLUS_5                          13                            17
  CLUS_6                          19                            10
  CLUS_7                          15                            18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       37     26     44
  DEL PEAK  4(2Q37.3) WILD-TYPE     68     24     56
D29V7, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          37                            68
  CLUS_2                          26                            24
  CLUS_3                          44                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED       39     11     54      3
  DEL PEAK  4(2Q37.3) WILD-TYPE     43     26     60     19
D29V8, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          39                            43
  CLUS_2                          11                            26
  CLUS_3                          54                            60
  CLUS_4                           3                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q37.3) MUTATED       17     15     19     14     20
  DEL PEAK  4(2Q37.3) WILD-TYPE     41     12     28      9     19
D29V9, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          17                            41
  CLUS_2                          15                            12
  CLUS_3                          19                            28
  CLUS_4                          14                             9
  CLUS_5                          20                            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q37.3) MUTATED       24     22     14     21      4
  DEL PEAK  4(2Q37.3) WILD-TYPE     34     27      7     21     20
D29V10, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          24                            34
  CLUS_2                          22                            27
  CLUS_3                          14                             7
  CLUS_4                          21                            21
  CLUS_5                           4                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  5(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED       56      3      6     45
  DEL PEAK  5(2Q37.3) WILD-TYPE     39     57     33     18
D30V1, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          56                            39
  CLUS_2                           3                            57
  CLUS_3                           6                            33
  CLUS_4                          45                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED       15     20     33     42
  DEL PEAK  5(2Q37.3) WILD-TYPE     39     36     39     33
D30V2, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          15                            39
  CLUS_2                          20                            36
  CLUS_3                          33                            39
  CLUS_4                          42                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED       23     23     28     22
  DEL PEAK  5(2Q37.3) WILD-TYPE     35     22     33     34
D30V3, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          23                            35
  CLUS_2                          23                            22
  CLUS_3                          28                            33
  CLUS_4                          22                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q37.3) MUTATED       17     11     27     29      7      5
  DEL PEAK  5(2Q37.3) WILD-TYPE      7     24     22     39     15     17
D30V4, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          17                             7
  CLUS_2                          11                            24
  CLUS_3                          27                            22
  CLUS_4                          29                            39
  CLUS_5                           7                            15
  CLUS_6                           5                            17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       55     35     18
  DEL PEAK  5(2Q37.3) WILD-TYPE     59     42     46
D30V5, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          55                            59
  CLUS_2                          35                            42
  CLUS_3                          18                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q37.3) MUTATED       29      6     16     12     13     19
  DEL PEAK  5(2Q37.3) WILD-TYPE     18     15     33     34     17     10
                               vv
clus                            CLUS_7
  DEL PEAK  5(2Q37.3) MUTATED       13
  DEL PEAK  5(2Q37.3) WILD-TYPE     20
D30V6, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          29                            18
  CLUS_2                           6                            15
  CLUS_3                          16                            33
  CLUS_4                          12                            34
  CLUS_5                          13                            17
  CLUS_6                          19                            10
  CLUS_7                          13                            20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       41     25     43
  DEL PEAK  5(2Q37.3) WILD-TYPE     64     25     57
D30V7, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          41                            64
  CLUS_2                          25                            25
  CLUS_3                          43                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED       41     12     52      4
  DEL PEAK  5(2Q37.3) WILD-TYPE     41     25     62     18
D30V8, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          41                            41
  CLUS_2                          12                            25
  CLUS_3                          52                            62
  CLUS_4                           4                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q37.3) MUTATED       19     16     18     12     21
  DEL PEAK  5(2Q37.3) WILD-TYPE     39     11     29     11     18
D30V9, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          19                            39
  CLUS_2                          16                            11
  CLUS_3                          18                            29
  CLUS_4                          12                            11
  CLUS_5                          21                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q37.3) MUTATED       28     20     13     20      5
  DEL PEAK  5(2Q37.3) WILD-TYPE     30     29      8     22     19
D30V10, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          28                            30
  CLUS_2                          20                            29
  CLUS_3                          13                             8
  CLUS_4                          20                            22
  CLUS_5                           5                            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  6(3P21.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P21.31) MUTATED       35     11      5     14
  DEL PEAK  6(3P21.31) WILD-TYPE     60     49     34     49
D31V1, multiclass
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  CLUS_1                           35                             60
  CLUS_2                           11                             49
  CLUS_3                            5                             34
  CLUS_4                           14                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P21.31) MUTATED       13     22      4     26
  DEL PEAK  6(3P21.31) WILD-TYPE     41     34     68     49
D31V2, multiclass
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  CLUS_1                           13                             41
  CLUS_2                           22                             34
  CLUS_3                            4                             68
  CLUS_4                           26                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P21.31) MUTATED       16     20      6     17
  DEL PEAK  6(3P21.31) WILD-TYPE     42     25     55     39
D31V3, multiclass
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  CLUS_1                           16                             42
  CLUS_2                           20                             25
  CLUS_3                            6                             55
  CLUS_4                           17                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P21.31) MUTATED       10     12     14      5     10      8
  DEL PEAK  6(3P21.31) WILD-TYPE     14     23     35     63     12     14
D31V4, multiclass
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  CLUS_1                           10                             14
  CLUS_2                           12                             23
  CLUS_3                           14                             35
  CLUS_4                            5                             63
  CLUS_5                           10                             12
  CLUS_6                            8                             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P21.31) MUTATED       34      5     26
  DEL PEAK  6(3P21.31) WILD-TYPE     80     72     38
D31V5, multiclass
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  CLUS_1                           34                             80
  CLUS_2                            5                             72
  CLUS_3                           26                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P21.31) MUTATED       23      5      2     19      6      3
  DEL PEAK  6(3P21.31) WILD-TYPE     24     16     47     27     24     26
                                vv
clus                             CLUS_7
  DEL PEAK  6(3P21.31) MUTATED        7
  DEL PEAK  6(3P21.31) WILD-TYPE     26
D31V6, multiclass
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  CLUS_1                           23                             24
  CLUS_2                            5                             16
  CLUS_3                            2                             47
  CLUS_4                           19                             27
  CLUS_5                            6                             24
  CLUS_6                            3                             26
  CLUS_7                            7                             26
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P21.31) MUTATED       37     17     11
  DEL PEAK  6(3P21.31) WILD-TYPE     68     33     89
D31V7, multiclass
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  CLUS_1                           37                             68
  CLUS_2                           17                             33
  CLUS_3                           11                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P21.31) MUTATED       29     10     18      8
  DEL PEAK  6(3P21.31) WILD-TYPE     53     27     96     14
D31V8, multiclass
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  CLUS_1                           29                             53
  CLUS_2                           10                             27
  CLUS_3                           18                             96
  CLUS_4                            8                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3P21.31) MUTATED       18     15      2      9     11
  DEL PEAK  6(3P21.31) WILD-TYPE     40     12     45     14     28
D31V9, multiclass
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  CLUS_1                           18                             40
  CLUS_2                           15                             12
  CLUS_3                            2                             45
  CLUS_4                            9                             14
  CLUS_5                           11                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3P21.31) MUTATED       20      2      8     15     10
  DEL PEAK  6(3P21.31) WILD-TYPE     38     47     13     27     14
D31V10, multiclass
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  CLUS_1                           20                             38
  CLUS_2                            2                             47
  CLUS_3                            8                             13
  CLUS_4                           15                             27
  CLUS_5                           10                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK  7(3Q13.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q13.31) MUTATED       28      5      9      9
  DEL PEAK  7(3Q13.31) WILD-TYPE     67     55     30     54
D32V1, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           28                             67
  CLUS_2                            5                             55
  CLUS_3                            9                             30
  CLUS_4                            9                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q13.31) MUTATED        7     15      6     23
  DEL PEAK  7(3Q13.31) WILD-TYPE     47     41     66     52
D32V2, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            7                             47
  CLUS_2                           15                             41
  CLUS_3                            6                             66
  CLUS_4                           23                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q13.31) MUTATED       17     16      7      5
  DEL PEAK  7(3Q13.31) WILD-TYPE     41     29     54     51
D32V3, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           17                             41
  CLUS_2                           16                             29
  CLUS_3                            7                             54
  CLUS_4                            5                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3Q13.31) MUTATED        5      8     12      6      5      9
  DEL PEAK  7(3Q13.31) WILD-TYPE     19     27     37     62     17     13
D32V4, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            5                             19
  CLUS_2                            8                             27
  CLUS_3                           12                             37
  CLUS_4                            6                             62
  CLUS_5                            5                             17
  CLUS_6                            9                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       25      7     19
  DEL PEAK  7(3Q13.31) WILD-TYPE     89     70     45
D32V5, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           25                             89
  CLUS_2                            7                             70
  CLUS_3                           19                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3Q13.31) MUTATED       13      2      3     16      8      4
  DEL PEAK  7(3Q13.31) WILD-TYPE     34     19     46     30     22     25
                                vv
clus                             CLUS_7
  DEL PEAK  7(3Q13.31) MUTATED        5
  DEL PEAK  7(3Q13.31) WILD-TYPE     28
D32V6, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           13                             34
  CLUS_2                            2                             19
  CLUS_3                            3                             46
  CLUS_4                           16                             30
  CLUS_5                            8                             22
  CLUS_6                            4                             25
  CLUS_7                            5                             28
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       29     10     11
  DEL PEAK  7(3Q13.31) WILD-TYPE     76     40     89
D32V7, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           29                             76
  CLUS_2                           10                             40
  CLUS_3                           11                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q13.31) MUTATED       24      6     14      6
  DEL PEAK  7(3Q13.31) WILD-TYPE     58     31    100     16
D32V8, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           24                             58
  CLUS_2                            6                             31
  CLUS_3                           14                            100
  CLUS_4                            6                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3Q13.31) MUTATED       13     12      4      3     10
  DEL PEAK  7(3Q13.31) WILD-TYPE     45     15     43     20     29
D32V9, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           13                             45
  CLUS_2                           12                             15
  CLUS_3                            4                             43
  CLUS_4                            3                             20
  CLUS_5                           10                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3Q13.31) MUTATED       16      4      3     12      7
  DEL PEAK  7(3Q13.31) WILD-TYPE     42     45     18     30     17
D32V10, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           16                             42
  CLUS_2                            4                             45
  CLUS_3                            3                             18
  CLUS_4                           12                             30
  CLUS_5                            7                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK  8(3Q29) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3Q29) MUTATED       29      5      6     14
  DEL PEAK  8(3Q29) WILD-TYPE     66     55     33     49
D33V1, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        29                          66
  CLUS_2                         5                          55
  CLUS_3                         6                          33
  CLUS_4                        14                          49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3Q29) MUTATED        6     13     12     23
  DEL PEAK  8(3Q29) WILD-TYPE     48     43     60     52
D33V2, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                         6                          48
  CLUS_2                        13                          43
  CLUS_3                        12                          60
  CLUS_4                        23                          52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3Q29) MUTATED       16     15     11      5
  DEL PEAK  8(3Q29) WILD-TYPE     42     30     50     51
D33V3, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        16                          42
  CLUS_2                        15                          30
  CLUS_3                        11                          50
  CLUS_4                         5                          51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3Q29) MUTATED        5     10     12     11      4      5
  DEL PEAK  8(3Q29) WILD-TYPE     19     25     37     57     18     17
D33V4, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                         5                          19
  CLUS_2                        10                          25
  CLUS_3                        12                          37
  CLUS_4                        11                          57
  CLUS_5                         4                          18
  CLUS_6                         5                          17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q29) MUTATED       27     12     15
  DEL PEAK  8(3Q29) WILD-TYPE     87     65     49
D33V5, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        27                          87
  CLUS_2                        12                          65
  CLUS_3                        15                          49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  8(3Q29) MUTATED       18      2      9     10      6      3      6
  DEL PEAK  8(3Q29) WILD-TYPE     29     19     40     36     24     26     27
D33V6, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        18                          29
  CLUS_2                         2                          19
  CLUS_3                         9                          40
  CLUS_4                        10                          36
  CLUS_5                         6                          24
  CLUS_6                         3                          26
  CLUS_7                         6                          27
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q29) MUTATED       27     11     15
  DEL PEAK  8(3Q29) WILD-TYPE     78     39     85
D33V7, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        27                          78
  CLUS_2                        11                          39
  CLUS_3                        15                          85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3Q29) MUTATED       26      5     18      4
  DEL PEAK  8(3Q29) WILD-TYPE     56     32     96     18
D33V8, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        26                          56
  CLUS_2                         5                          32
  CLUS_3                        18                          96
  CLUS_4                         4                          18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3Q29) MUTATED       12     12      8      4      7
  DEL PEAK  8(3Q29) WILD-TYPE     46     15     39     19     32
D33V9, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        12                          46
  CLUS_2                        12                          15
  CLUS_3                         8                          39
  CLUS_4                         4                          19
  CLUS_5                         7                          32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3Q29) MUTATED       19      9      2     10      3
  DEL PEAK  8(3Q29) WILD-TYPE     39     40     19     32     21
D33V10, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        19                          39
  CLUS_2                         9                          40
  CLUS_3                         2                          19
  CLUS_4                        10                          32
  CLUS_5                         3                          21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK  9(4Q35.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4Q35.1) MUTATED       47      7      9     31
  DEL PEAK  9(4Q35.1) WILD-TYPE     48     53     30     32
D34V1, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          47                            48
  CLUS_2                           7                            53
  CLUS_3                           9                            30
  CLUS_4                          31                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4Q35.1) MUTATED       15     16     23     40
  DEL PEAK  9(4Q35.1) WILD-TYPE     39     40     49     35
D34V2, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          15                            39
  CLUS_2                          16                            40
  CLUS_3                          23                            49
  CLUS_4                          40                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4Q35.1) MUTATED       22     19     20     24
  DEL PEAK  9(4Q35.1) WILD-TYPE     36     26     41     32
D34V3, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          22                            36
  CLUS_2                          19                            26
  CLUS_3                          20                            41
  CLUS_4                          24                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4Q35.1) MUTATED       10     11     29     19     10      6
  DEL PEAK  9(4Q35.1) WILD-TYPE     14     24     20     49     12     16
D34V4, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          10                            14
  CLUS_2                          11                            24
  CLUS_3                          29                            20
  CLUS_4                          19                            49
  CLUS_5                          10                            12
  CLUS_6                           6                            16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q35.1) MUTATED       53     24     17
  DEL PEAK  9(4Q35.1) WILD-TYPE     61     53     47
D34V5, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          53                            61
  CLUS_2                          24                            53
  CLUS_3                          17                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4Q35.1) MUTATED       24      4     15     13     16      8
  DEL PEAK  9(4Q35.1) WILD-TYPE     23     17     34     33     14     21
                               vv
clus                            CLUS_7
  DEL PEAK  9(4Q35.1) MUTATED       14
  DEL PEAK  9(4Q35.1) WILD-TYPE     19
D34V6, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          24                            23
  CLUS_2                           4                            17
  CLUS_3                          15                            34
  CLUS_4                          13                            33
  CLUS_5                          16                            14
  CLUS_6                           8                            21
  CLUS_7                          14                            19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q35.1) MUTATED       39     22     32
  DEL PEAK  9(4Q35.1) WILD-TYPE     66     28     68
D34V7, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          39                            66
  CLUS_2                          22                            28
  CLUS_3                          32                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4Q35.1) MUTATED       36      9     43      5
  DEL PEAK  9(4Q35.1) WILD-TYPE     46     28     71     17
D34V8, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          36                            46
  CLUS_2                           9                            28
  CLUS_3                          43                            71
  CLUS_4                           5                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4Q35.1) MUTATED       25     10     14     13     17
  DEL PEAK  9(4Q35.1) WILD-TYPE     33     17     33     10     22
D34V9, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          25                            33
  CLUS_2                          10                            17
  CLUS_3                          14                            33
  CLUS_4                          13                            10
  CLUS_5                          17                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4Q35.1) MUTATED       26     17     13     15      8
  DEL PEAK  9(4Q35.1) WILD-TYPE     32     32      8     27     16
D34V10, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          26                            32
  CLUS_2                          17                            32
  CLUS_3                          13                             8
  CLUS_4                          15                            27
  CLUS_5                           8                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK 10(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5P15.33) MUTATED        9      9      4     11
  DEL PEAK 10(5P15.33) WILD-TYPE     86     51     35     52
D35V1, multiclass
        clus
vv       DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE
  CLUS_1                            9                             86
  CLUS_2                            9                             51
  CLUS_3                            4                             35
  CLUS_4                           11                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5P15.33) MUTATED        8      6      3     16
  DEL PEAK 10(5P15.33) WILD-TYPE     46     50     69     59
D35V2, multiclass
        clus
vv       DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE
  CLUS_1                            8                             46
  CLUS_2                            6                             50
  CLUS_3                            3                             69
  CLUS_4                           16                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5P15.33) MUTATED        6      9      3     13
  DEL PEAK 10(5P15.33) WILD-TYPE     52     36     58     43
D35V3, multiclass
        clus
vv       DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE
  CLUS_1                            6                             52
  CLUS_2                            9                             36
  CLUS_3                            3                             58
  CLUS_4                           13                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(5P15.33) MUTATED        2      5     15      2      5      2
  DEL PEAK 10(5P15.33) WILD-TYPE     22     30     34     66     17     20
D35V4, multiclass
        clus
vv       DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE
  CLUS_1                            2                             22
  CLUS_2                            5                             30
  CLUS_3                           15                             34
  CLUS_4                            2                             66
  CLUS_5                            5                             17
  CLUS_6                            2                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5P15.33) MUTATED       18      3     11
  DEL PEAK 10(5P15.33) WILD-TYPE     96     74     53
D35V5, multiclass
        clus
vv       DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE
  CLUS_1                           18                             96
  CLUS_2                            3                             74
  CLUS_3                           11                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(5P15.33) MUTATED        4      2      3      5      8      0
  DEL PEAK 10(5P15.33) WILD-TYPE     43     19     46     41     22     29
                                vv
clus                             CLUS_7
  DEL PEAK 10(5P15.33) MUTATED       10
  DEL PEAK 10(5P15.33) WILD-TYPE     23
D35V6, multiclass
        clus
vv       DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE
  CLUS_1                            4                             43
  CLUS_2                            2                             19
  CLUS_3                            3                             46
  CLUS_4                            5                             41
  CLUS_5                            8                             22
  CLUS_6                            0                             29
  CLUS_7                           10                             23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5P15.33) MUTATED       14     11      8
  DEL PEAK 10(5P15.33) WILD-TYPE     91     39     92
D35V7, multiclass
        clus
vv       DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE
  CLUS_1                           14                             91
  CLUS_2                           11                             39
  CLUS_3                            8                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5P15.33) MUTATED       13      4     15      1
  DEL PEAK 10(5P15.33) WILD-TYPE     69     33     99     21
D35V8, multiclass
        clus
vv       DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE
  CLUS_1                           13                             69
  CLUS_2                            4                             33
  CLUS_3                           15                             99
  CLUS_4                            1                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(5P15.33) MUTATED        6      4      2      4     11
  DEL PEAK 10(5P15.33) WILD-TYPE     52     23     45     19     28
D35V9, multiclass
        clus
vv       DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE
  CLUS_1                            6                             52
  CLUS_2                            4                             23
  CLUS_3                            2                             45
  CLUS_4                            4                             19
  CLUS_5                           11                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(5P15.33) MUTATED       10      2      5      9      1
  DEL PEAK 10(5P15.33) WILD-TYPE     48     47     16     33     23
D35V10, multiclass
        clus
vv       DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE
  CLUS_1                           10                             48
  CLUS_2                            2                             47
  CLUS_3                            5                             16
  CLUS_4                            9                             33
  CLUS_5                            1                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK 11(6P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6P25.3) MUTATED       31      4     20     26
  DEL PEAK 11(6P25.3) WILD-TYPE     64     56     19     37
D36V1, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                          31                            64
  CLUS_2                           4                            56
  CLUS_3                          20                            19
  CLUS_4                          26                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6P25.3) MUTATED        9     11     36     25
  DEL PEAK 11(6P25.3) WILD-TYPE     45     45     36     50
D36V2, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                           9                            45
  CLUS_2                          11                            45
  CLUS_3                          36                            36
  CLUS_4                          25                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6P25.3) MUTATED        7     13     28     20
  DEL PEAK 11(6P25.3) WILD-TYPE     51     32     33     36
D36V3, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                           7                            51
  CLUS_2                          13                            32
  CLUS_3                          28                            33
  CLUS_4                          20                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6P25.3) MUTATED        3     10     15     28      8      4
  DEL PEAK 11(6P25.3) WILD-TYPE     21     25     34     40     14     18
D36V4, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                           3                            21
  CLUS_2                          10                            25
  CLUS_3                          15                            34
  CLUS_4                          28                            40
  CLUS_5                           8                            14
  CLUS_6                           4                            18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6P25.3) MUTATED       28     37     14
  DEL PEAK 11(6P25.3) WILD-TYPE     86     40     50
D36V5, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                          28                            86
  CLUS_2                          37                            40
  CLUS_3                          14                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6P25.3) MUTATED        7      5     26      9      9     11
  DEL PEAK 11(6P25.3) WILD-TYPE     40     16     23     37     21     18
                               vv
clus                            CLUS_7
  DEL PEAK 11(6P25.3) MUTATED       12
  DEL PEAK 11(6P25.3) WILD-TYPE     21
D36V6, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                           7                            40
  CLUS_2                           5                            16
  CLUS_3                          26                            23
  CLUS_4                           9                            37
  CLUS_5                           9                            21
  CLUS_6                          11                            18
  CLUS_7                          12                            21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6P25.3) MUTATED       24     15     42
  DEL PEAK 11(6P25.3) WILD-TYPE     81     35     58
D36V7, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                          24                            81
  CLUS_2                          15                            35
  CLUS_3                          42                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6P25.3) MUTATED       20     12     46      3
  DEL PEAK 11(6P25.3) WILD-TYPE     62     25     68     19
D36V8, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                          20                            62
  CLUS_2                          12                            25
  CLUS_3                          46                            68
  CLUS_4                           3                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(6P25.3) MUTATED       11      8     21      8     14
  DEL PEAK 11(6P25.3) WILD-TYPE     47     19     26     15     25
D36V9, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                          11                            47
  CLUS_2                           8                            19
  CLUS_3                          21                            26
  CLUS_4                           8                            15
  CLUS_5                          14                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(6P25.3) MUTATED       15     22      5     16      4
  DEL PEAK 11(6P25.3) WILD-TYPE     43     27     16     26     20
D36V10, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                          15                            43
  CLUS_2                          22                            27
  CLUS_3                           5                            16
  CLUS_4                          16                            26
  CLUS_5                           4                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK 12(6Q14.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q14.1) MUTATED       40      3     14     21
  DEL PEAK 12(6Q14.1) WILD-TYPE     55     57     25     42
D37V1, multiclass
        clus
vv       DEL PEAK 12(6Q14.1) MUTATED DEL PEAK 12(6Q14.1) WILD-TYPE
  CLUS_1                          40                            55
  CLUS_2                           3                            57
  CLUS_3                          14                            25
  CLUS_4                          21                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q14.1) MUTATED       11     12     23     32
  DEL PEAK 12(6Q14.1) WILD-TYPE     43     44     49     43
D37V2, multiclass
        clus
vv       DEL PEAK 12(6Q14.1) MUTATED DEL PEAK 12(6Q14.1) WILD-TYPE
  CLUS_1                          11                            43
  CLUS_2                          12                            44
  CLUS_3                          23                            49
  CLUS_4                          32                            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q14.1) MUTATED       10     22     16     17
  DEL PEAK 12(6Q14.1) WILD-TYPE     48     23     45     39
D37V3, multiclass
        clus
vv       DEL PEAK 12(6Q14.1) MUTATED DEL PEAK 12(6Q14.1) WILD-TYPE
  CLUS_1                          10                            48
  CLUS_2                          22                            23
  CLUS_3                          16                            45
  CLUS_4                          17                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6Q14.1) MUTATED        4     10     24     15      5      7
  DEL PEAK 12(6Q14.1) WILD-TYPE     20     25     25     53     17     15
D37V4, multiclass
        clus
vv       DEL PEAK 12(6Q14.1) MUTATED DEL PEAK 12(6Q14.1) WILD-TYPE
  CLUS_1                           4                            20
  CLUS_2                          10                            25
  CLUS_3                          24                            25
  CLUS_4                          15                            53
  CLUS_5                           5                            17
  CLUS_6                           7                            15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q14.1) MUTATED       39     23     16
  DEL PEAK 12(6Q14.1) WILD-TYPE     75     54     48
D37V5, multiclass
        clus
vv       DEL PEAK 12(6Q14.1) MUTATED DEL PEAK 12(6Q14.1) WILD-TYPE
  CLUS_1                          39                            75
  CLUS_2                          23                            54
  CLUS_3                          16                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6Q14.1) MUTATED       15      4     16     10     14      7
  DEL PEAK 12(6Q14.1) WILD-TYPE     32     17     33     36     16     22
                               vv
clus                            CLUS_7
  DEL PEAK 12(6Q14.1) MUTATED       12
  DEL PEAK 12(6Q14.1) WILD-TYPE     21
D37V6, multiclass
        clus
vv       DEL PEAK 12(6Q14.1) MUTATED DEL PEAK 12(6Q14.1) WILD-TYPE
  CLUS_1                          15                            32
  CLUS_2                           4                            17
  CLUS_3                          16                            33
  CLUS_4                          10                            36
  CLUS_5                          14                            16
  CLUS_6                           7                            22
  CLUS_7                          12                            21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q14.1) MUTATED       27     20     30
  DEL PEAK 12(6Q14.1) WILD-TYPE     78     30     70
D37V7, multiclass
        clus
vv       DEL PEAK 12(6Q14.1) MUTATED DEL PEAK 12(6Q14.1) WILD-TYPE
  CLUS_1                          27                            78
  CLUS_2                          20                            30
  CLUS_3                          30                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q14.1) MUTATED       26     10     37      4
  DEL PEAK 12(6Q14.1) WILD-TYPE     56     27     77     18
D37V8, multiclass
        clus
vv       DEL PEAK 12(6Q14.1) MUTATED DEL PEAK 12(6Q14.1) WILD-TYPE
  CLUS_1                          26                            56
  CLUS_2                          10                            27
  CLUS_3                          37                            77
  CLUS_4                           4                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6Q14.1) MUTATED       15      9     17     10     18
  DEL PEAK 12(6Q14.1) WILD-TYPE     43     18     30     13     21
D37V9, multiclass
        clus
vv       DEL PEAK 12(6Q14.1) MUTATED DEL PEAK 12(6Q14.1) WILD-TYPE
  CLUS_1                          15                            43
  CLUS_2                           9                            18
  CLUS_3                          17                            30
  CLUS_4                          10                            13
  CLUS_5                          18                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6Q14.1) MUTATED       17     18      9     19      6
  DEL PEAK 12(6Q14.1) WILD-TYPE     41     31     12     23     18
D37V10, multiclass
        clus
vv       DEL PEAK 12(6Q14.1) MUTATED DEL PEAK 12(6Q14.1) WILD-TYPE
  CLUS_1                          17                            41
  CLUS_2                          18                            31
  CLUS_3                           9                            12
  CLUS_4                          19                            23
  CLUS_5                           6                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 13(7Q36.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7Q36.3) MUTATED       41      3      6     21
  DEL PEAK 13(7Q36.3) WILD-TYPE     54     57     33     42
D38V1, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          41                            54
  CLUS_2                           3                            57
  CLUS_3                           6                            33
  CLUS_4                          21                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7Q36.3) MUTATED        8     12     22     29
  DEL PEAK 13(7Q36.3) WILD-TYPE     46     44     50     46
D38V2, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                           8                            46
  CLUS_2                          12                            44
  CLUS_3                          22                            50
  CLUS_4                          29                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7Q36.3) MUTATED       13     17     14     17
  DEL PEAK 13(7Q36.3) WILD-TYPE     45     28     47     39
D38V3, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          13                            45
  CLUS_2                          17                            28
  CLUS_3                          14                            47
  CLUS_4                          17                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7Q36.3) MUTATED        5     10     22     17      5      2
  DEL PEAK 13(7Q36.3) WILD-TYPE     19     25     27     51     17     20
D38V4, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                           5                            19
  CLUS_2                          10                            25
  CLUS_3                          22                            27
  CLUS_4                          17                            51
  CLUS_5                           5                            17
  CLUS_6                           2                            20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.3) MUTATED       35     24     12
  DEL PEAK 13(7Q36.3) WILD-TYPE     79     53     52
D38V5, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          35                            79
  CLUS_2                          24                            53
  CLUS_3                          12                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7Q36.3) MUTATED       14      3     14      8     14      9
  DEL PEAK 13(7Q36.3) WILD-TYPE     33     18     35     38     16     20
                               vv
clus                            CLUS_7
  DEL PEAK 13(7Q36.3) MUTATED        9
  DEL PEAK 13(7Q36.3) WILD-TYPE     24
D38V6, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          14                            33
  CLUS_2                           3                            18
  CLUS_3                          14                            35
  CLUS_4                           8                            38
  CLUS_5                          14                            16
  CLUS_6                           9                            20
  CLUS_7                           9                            24
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.3) MUTATED       21     19     30
  DEL PEAK 13(7Q36.3) WILD-TYPE     84     31     70
D38V7, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          21                            84
  CLUS_2                          19                            31
  CLUS_3                          30                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7Q36.3) MUTATED       22     11     37      0
  DEL PEAK 13(7Q36.3) WILD-TYPE     60     26     77     22
D38V8, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          22                            60
  CLUS_2                          11                            26
  CLUS_3                          37                            77
  CLUS_4                           0                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(7Q36.3) MUTATED       11      8     16      7     12
  DEL PEAK 13(7Q36.3) WILD-TYPE     47     19     31     16     27
D38V9, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          11                            47
  CLUS_2                           8                            19
  CLUS_3                          16                            31
  CLUS_4                           7                            16
  CLUS_5                          12                            27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(7Q36.3) MUTATED       15     15      6     16      2
  DEL PEAK 13(7Q36.3) WILD-TYPE     43     34     15     26     22
D38V10, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          15                            43
  CLUS_2                          15                            34
  CLUS_3                           6                            15
  CLUS_4                          16                            26
  CLUS_5                           2                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 14(8P23.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.3) MUTATED       43      6      7     25
  DEL PEAK 14(8P23.3) WILD-TYPE     52     54     32     38
D39V1, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          43                            52
  CLUS_2                           6                            54
  CLUS_3                           7                            32
  CLUS_4                          25                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.3) MUTATED       13     16     11     41
  DEL PEAK 14(8P23.3) WILD-TYPE     41     40     61     34
D39V2, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          13                            41
  CLUS_2                          16                            40
  CLUS_3                          11                            61
  CLUS_4                          41                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.3) MUTATED       20     23      9     22
  DEL PEAK 14(8P23.3) WILD-TYPE     38     22     52     34
D39V3, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          20                            38
  CLUS_2                          23                            22
  CLUS_3                           9                            52
  CLUS_4                          22                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.3) MUTATED       13      8     26     13      8      6
  DEL PEAK 14(8P23.3) WILD-TYPE     11     27     23     55     14     16
D39V4, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          13                            11
  CLUS_2                           8                            27
  CLUS_3                          26                            23
  CLUS_4                          13                            55
  CLUS_5                           8                            14
  CLUS_6                           6                            16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED       51     12     17
  DEL PEAK 14(8P23.3) WILD-TYPE     63     65     47
D39V5, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          51                            63
  CLUS_2                          12                            65
  CLUS_3                          17                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.3) MUTATED       23      6      6     10     14      7
  DEL PEAK 14(8P23.3) WILD-TYPE     24     15     43     36     16     22
                               vv
clus                            CLUS_7
  DEL PEAK 14(8P23.3) MUTATED       14
  DEL PEAK 14(8P23.3) WILD-TYPE     19
D39V6, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          23                            24
  CLUS_2                           6                            15
  CLUS_3                           6                            43
  CLUS_4                          10                            36
  CLUS_5                          14                            16
  CLUS_6                           7                            22
  CLUS_7                          14                            19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED       38     21     20
  DEL PEAK 14(8P23.3) WILD-TYPE     67     29     80
D39V7, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          38                            67
  CLUS_2                          21                            29
  CLUS_3                          20                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.3) MUTATED       36     14     25      4
  DEL PEAK 14(8P23.3) WILD-TYPE     46     23     89     18
D39V8, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          36                            46
  CLUS_2                          14                            23
  CLUS_3                          25                            89
  CLUS_4                           4                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(8P23.3) MUTATED       17     16      6      8     17
  DEL PEAK 14(8P23.3) WILD-TYPE     41     11     41     15     22
D39V9, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          17                            41
  CLUS_2                          16                            11
  CLUS_3                           6                            41
  CLUS_4                           8                            15
  CLUS_5                          17                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(8P23.3) MUTATED       29      5      8     17      5
  DEL PEAK 14(8P23.3) WILD-TYPE     29     44     13     25     19
D39V10, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          29                            29
  CLUS_2                           5                            44
  CLUS_3                           8                            13
  CLUS_4                          17                            25
  CLUS_5                           5                            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 15(9P24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P24.3) MUTATED       59     11     17     13
  DEL PEAK 15(9P24.3) WILD-TYPE     36     49     22     50
D40V1, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                          59                            36
  CLUS_2                          11                            49
  CLUS_3                          17                            22
  CLUS_4                          13                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P24.3) MUTATED       22     19     23     36
  DEL PEAK 15(9P24.3) WILD-TYPE     32     37     49     39
D40V2, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                          22                            32
  CLUS_2                          19                            37
  CLUS_3                          23                            49
  CLUS_4                          36                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P24.3) MUTATED       17     22     20     29
  DEL PEAK 15(9P24.3) WILD-TYPE     41     23     41     27
D40V3, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                          17                            41
  CLUS_2                          22                            23
  CLUS_3                          20                            41
  CLUS_4                          29                            27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(9P24.3) MUTATED        7     17     25     20      9     10
  DEL PEAK 15(9P24.3) WILD-TYPE     17     18     24     48     13     12
D40V4, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                           7                            17
  CLUS_2                          17                            18
  CLUS_3                          25                            24
  CLUS_4                          20                            48
  CLUS_5                           9                            13
  CLUS_6                          10                            12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P24.3) MUTATED       48     23     27
  DEL PEAK 15(9P24.3) WILD-TYPE     66     54     37
D40V5, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                          48                            66
  CLUS_2                          23                            54
  CLUS_3                          27                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(9P24.3) MUTATED       19      6     16     20     14      7
  DEL PEAK 15(9P24.3) WILD-TYPE     28     15     33     26     16     22
                               vv
clus                            CLUS_7
  DEL PEAK 15(9P24.3) MUTATED       16
  DEL PEAK 15(9P24.3) WILD-TYPE     17
D40V6, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                          19                            28
  CLUS_2                           6                            15
  CLUS_3                          16                            33
  CLUS_4                          20                            26
  CLUS_5                          14                            16
  CLUS_6                           7                            22
  CLUS_7                          16                            17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P24.3) MUTATED       38     29     33
  DEL PEAK 15(9P24.3) WILD-TYPE     67     21     67
D40V7, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                          38                            67
  CLUS_2                          29                            21
  CLUS_3                          33                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P24.3) MUTATED       33     15     45      7
  DEL PEAK 15(9P24.3) WILD-TYPE     49     22     69     15
D40V8, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                          33                            49
  CLUS_2                          15                            22
  CLUS_3                          45                            69
  CLUS_4                           7                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(9P24.3) MUTATED       22     15     16      8     18
  DEL PEAK 15(9P24.3) WILD-TYPE     36     12     31     15     21
D40V9, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                          22                            36
  CLUS_2                          15                            12
  CLUS_3                          16                            31
  CLUS_4                           8                            15
  CLUS_5                          18                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(9P24.3) MUTATED       25     15     10     19     10
  DEL PEAK 15(9P24.3) WILD-TYPE     33     34     11     23     14
D40V10, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                          25                            33
  CLUS_2                          15                            34
  CLUS_3                          10                            11
  CLUS_4                          19                            23
  CLUS_5                          10                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 16(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P21.3) MUTATED       74     12     18     10
  DEL PEAK 16(9P21.3) WILD-TYPE     21     48     21     53
D41V1, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          74                            21
  CLUS_2                          12                            48
  CLUS_3                          18                            21
  CLUS_4                          10                            53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P21.3) MUTATED       26     23     21     44
  DEL PEAK 16(9P21.3) WILD-TYPE     28     33     51     31
D41V2, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          26                            28
  CLUS_2                          23                            33
  CLUS_3                          21                            51
  CLUS_4                          44                            31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P21.3) MUTATED       23     26     21     35
  DEL PEAK 16(9P21.3) WILD-TYPE     35     19     40     21
D41V3, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          23                            35
  CLUS_2                          26                            19
  CLUS_3                          21                            40
  CLUS_4                          35                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9P21.3) MUTATED        7     17     34     22     12     13
  DEL PEAK 16(9P21.3) WILD-TYPE     17     18     15     46     10      9
D41V4, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                           7                            17
  CLUS_2                          17                            18
  CLUS_3                          34                            15
  CLUS_4                          22                            46
  CLUS_5                          12                            10
  CLUS_6                          13                             9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P21.3) MUTATED       58     22     32
  DEL PEAK 16(9P21.3) WILD-TYPE     56     55     32
D41V5, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          58                            56
  CLUS_2                          22                            55
  CLUS_3                          32                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9P21.3) MUTATED       24      7     17     24     19      5
  DEL PEAK 16(9P21.3) WILD-TYPE     23     14     32     22     11     24
                               vv
clus                            CLUS_7
  DEL PEAK 16(9P21.3) MUTATED       16
  DEL PEAK 16(9P21.3) WILD-TYPE     17
D41V6, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          24                            23
  CLUS_2                           7                            14
  CLUS_3                          17                            32
  CLUS_4                          24                            22
  CLUS_5                          19                            11
  CLUS_6                           5                            24
  CLUS_7                          16                            17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P21.3) MUTATED       45     33     35
  DEL PEAK 16(9P21.3) WILD-TYPE     60     17     65
D41V7, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          45                            60
  CLUS_2                          33                            17
  CLUS_3                          35                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P21.3) MUTATED       41     17     47      8
  DEL PEAK 16(9P21.3) WILD-TYPE     41     20     67     14
D41V8, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          41                            41
  CLUS_2                          17                            20
  CLUS_3                          47                            67
  CLUS_4                           8                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(9P21.3) MUTATED       25     17     13      9     28
  DEL PEAK 16(9P21.3) WILD-TYPE     33     10     34     14     11
D41V9, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          25                            33
  CLUS_2                          17                            10
  CLUS_3                          13                            34
  CLUS_4                           9                            14
  CLUS_5                          28                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(9P21.3) MUTATED       30     12     14     26     10
  DEL PEAK 16(9P21.3) WILD-TYPE     28     37      7     16     14
D41V10, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          30                            28
  CLUS_2                          12                            37
  CLUS_3                          14                             7
  CLUS_4                          26                            16
  CLUS_5                          10                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 17(9Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9Q34.3) MUTATED       27      2      9     23
  DEL PEAK 17(9Q34.3) WILD-TYPE     68     58     30     40
D42V1, multiclass
        clus
vv       DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                          27                            68
  CLUS_2                           2                            58
  CLUS_3                           9                            30
  CLUS_4                          23                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9Q34.3) MUTATED        3      8     26     24
  DEL PEAK 17(9Q34.3) WILD-TYPE     51     48     46     51
D42V2, multiclass
        clus
vv       DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                           3                            51
  CLUS_2                           8                            48
  CLUS_3                          26                            46
  CLUS_4                          24                            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9Q34.3) MUTATED        8     13     22     10
  DEL PEAK 17(9Q34.3) WILD-TYPE     50     32     39     46
D42V3, multiclass
        clus
vv       DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                           8                            50
  CLUS_2                          13                            32
  CLUS_3                          22                            39
  CLUS_4                          10                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9Q34.3) MUTATED        4      3     13     23      5      5
  DEL PEAK 17(9Q34.3) WILD-TYPE     20     32     36     45     17     17
D42V4, multiclass
        clus
vv       DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                           4                            20
  CLUS_2                           3                            32
  CLUS_3                          13                            36
  CLUS_4                          23                            45
  CLUS_5                           5                            17
  CLUS_6                           5                            17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.3) MUTATED       21     26     13
  DEL PEAK 17(9Q34.3) WILD-TYPE     93     51     51
D42V5, multiclass
        clus
vv       DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                          21                            93
  CLUS_2                          26                            51
  CLUS_3                          13                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9Q34.3) MUTATED        7      2     15      9      8     11
  DEL PEAK 17(9Q34.3) WILD-TYPE     40     19     34     37     22     18
                               vv
clus                            CLUS_7
  DEL PEAK 17(9Q34.3) MUTATED        8
  DEL PEAK 17(9Q34.3) WILD-TYPE     25
D42V6, multiclass
        clus
vv       DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                           7                            40
  CLUS_2                           2                            19
  CLUS_3                          15                            34
  CLUS_4                           9                            37
  CLUS_5                           8                            22
  CLUS_6                          11                            18
  CLUS_7                           8                            25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.3) MUTATED       18      9     34
  DEL PEAK 17(9Q34.3) WILD-TYPE     87     41     66
D42V7, multiclass
        clus
vv       DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                          18                            87
  CLUS_2                           9                            41
  CLUS_3                          34                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9Q34.3) MUTATED       14      3     39      5
  DEL PEAK 17(9Q34.3) WILD-TYPE     68     34     75     17
D42V8, multiclass
        clus
vv       DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                          14                            68
  CLUS_2                           3                            34
  CLUS_3                          39                            75
  CLUS_4                           5                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(9Q34.3) MUTATED        9      5     14     11      9
  DEL PEAK 17(9Q34.3) WILD-TYPE     49     22     33     12     30
D42V9, multiclass
        clus
vv       DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                           9                            49
  CLUS_2                           5                            22
  CLUS_3                          14                            33
  CLUS_4                          11                            12
  CLUS_5                           9                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(9Q34.3) MUTATED        8     18      8      7      7
  DEL PEAK 17(9Q34.3) WILD-TYPE     50     31     13     35     17
D42V10, multiclass
        clus
vv       DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                           8                            50
  CLUS_2                          18                            31
  CLUS_3                           8                            13
  CLUS_4                           7                            35
  CLUS_5                           7                            17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 18(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10P15.3) MUTATED       60      6     27     35
  DEL PEAK 18(10P15.3) WILD-TYPE     35     54     12     28
D43V1, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           60                             35
  CLUS_2                            6                             54
  CLUS_3                           27                             12
  CLUS_4                           35                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10P15.3) MUTATED       17     24     43     44
  DEL PEAK 18(10P15.3) WILD-TYPE     37     32     29     31
D43V2, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           17                             37
  CLUS_2                           24                             32
  CLUS_3                           43                             29
  CLUS_4                           44                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10P15.3) MUTATED       26     24     36     25
  DEL PEAK 18(10P15.3) WILD-TYPE     32     21     25     31
D43V3, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           26                             32
  CLUS_2                           24                             21
  CLUS_3                           36                             25
  CLUS_4                           25                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(10P15.3) MUTATED       15      8     34     34      7     13
  DEL PEAK 18(10P15.3) WILD-TYPE      9     27     15     34     15      9
D43V4, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           15                              9
  CLUS_2                            8                             27
  CLUS_3                           34                             15
  CLUS_4                           34                             34
  CLUS_5                            7                             15
  CLUS_6                           13                              9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       55     44     28
  DEL PEAK 18(10P15.3) WILD-TYPE     59     33     36
D43V5, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           55                             59
  CLUS_2                           44                             33
  CLUS_3                           28                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(10P15.3) MUTATED       26      5     34     20     13     11
  DEL PEAK 18(10P15.3) WILD-TYPE     21     16     15     26     17     18
                                vv
clus                             CLUS_7
  DEL PEAK 18(10P15.3) MUTATED       18
  DEL PEAK 18(10P15.3) WILD-TYPE     15
D43V6, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           26                             21
  CLUS_2                            5                             16
  CLUS_3                           34                             15
  CLUS_4                           20                             26
  CLUS_5                           13                             17
  CLUS_6                           11                             18
  CLUS_7                           18                             15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       49     24     54
  DEL PEAK 18(10P15.3) WILD-TYPE     56     26     46
D43V7, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           49                             56
  CLUS_2                           24                             26
  CLUS_3                           54                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10P15.3) MUTATED       43     12     65      7
  DEL PEAK 18(10P15.3) WILD-TYPE     39     25     49     15
D43V8, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           43                             39
  CLUS_2                           12                             25
  CLUS_3                           65                             49
  CLUS_4                            7                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(10P15.3) MUTATED       26     13     28     12     22
  DEL PEAK 18(10P15.3) WILD-TYPE     32     14     19     11     17
D43V9, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           26                             32
  CLUS_2                           13                             14
  CLUS_3                           28                             19
  CLUS_4                           12                             11
  CLUS_5                           22                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(10P15.3) MUTATED       31     28     12     20     10
  DEL PEAK 18(10P15.3) WILD-TYPE     27     21      9     22     14
D43V10, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           31                             27
  CLUS_2                           28                             21
  CLUS_3                           12                              9
  CLUS_4                           20                             22
  CLUS_5                           10                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 19(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10Q23.31) MUTATED       50      4     32     52
  DEL PEAK 19(10Q23.31) WILD-TYPE     45     56      7     11
D44V1, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            50                              45
  CLUS_2                             4                              56
  CLUS_3                            32                               7
  CLUS_4                            52                              11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10Q23.31) MUTATED       14     15     58     51
  DEL PEAK 19(10Q23.31) WILD-TYPE     40     41     14     24
D44V2, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            14                              40
  CLUS_2                            15                              41
  CLUS_3                            58                              14
  CLUS_4                            51                              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10Q23.31) MUTATED       17     25     48     27
  DEL PEAK 19(10Q23.31) WILD-TYPE     41     20     13     29
D44V3, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            17                              41
  CLUS_2                            25                              20
  CLUS_3                            48                              13
  CLUS_4                            27                              29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(10Q23.31) MUTATED       13      7     35     47      9      6
  DEL PEAK 19(10Q23.31) WILD-TYPE     11     28     14     21     13     16
D44V4, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            13                              11
  CLUS_2                             7                              28
  CLUS_3                            35                              14
  CLUS_4                            47                              21
  CLUS_5                             9                              13
  CLUS_6                             6                              16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q23.31) MUTATED       56     61     20
  DEL PEAK 19(10Q23.31) WILD-TYPE     58     16     44
D44V5, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            56                              58
  CLUS_2                            61                              16
  CLUS_3                            20                              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(10Q23.31) MUTATED       25      7     46     10     13     15
  DEL PEAK 19(10Q23.31) WILD-TYPE     22     14      3     36     17     14
                                 vv
clus                              CLUS_7
  DEL PEAK 19(10Q23.31) MUTATED       21
  DEL PEAK 19(10Q23.31) WILD-TYPE     12
D44V6, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            25                              22
  CLUS_2                             7                              14
  CLUS_3                            46                               3
  CLUS_4                            10                              36
  CLUS_5                            13                              17
  CLUS_6                            15                              14
  CLUS_7                            21                              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q23.31) MUTATED       40     28     69
  DEL PEAK 19(10Q23.31) WILD-TYPE     65     22     31
D44V7, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            40                              65
  CLUS_2                            28                              22
  CLUS_3                            69                              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10Q23.31) MUTATED       38     14     81      4
  DEL PEAK 19(10Q23.31) WILD-TYPE     44     23     33     18
D44V8, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            38                              44
  CLUS_2                            14                              23
  CLUS_3                            81                              33
  CLUS_4                             4                              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(10Q23.31) MUTATED       20     15     36     15     20
  DEL PEAK 19(10Q23.31) WILD-TYPE     38     12     11      8     19
D44V9, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            20                              38
  CLUS_2                            15                              12
  CLUS_3                            36                              11
  CLUS_4                            15                               8
  CLUS_5                            20                              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(10Q23.31) MUTATED       27     38     11     24      6
  DEL PEAK 19(10Q23.31) WILD-TYPE     31     11     10     18     18
D44V10, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            27                              31
  CLUS_2                            38                              11
  CLUS_3                            11                              10
  CLUS_4                            24                              18
  CLUS_5                             6                              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 20(10Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10Q26.3) MUTATED       47      2     33     50
  DEL PEAK 20(10Q26.3) WILD-TYPE     48     58      6     13
D45V1, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           47                             48
  CLUS_2                            2                             58
  CLUS_3                           33                              6
  CLUS_4                           50                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10Q26.3) MUTATED       12     13     56     51
  DEL PEAK 20(10Q26.3) WILD-TYPE     42     43     16     24
D45V2, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           12                             42
  CLUS_2                           13                             43
  CLUS_3                           56                             16
  CLUS_4                           51                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10Q26.3) MUTATED       18     24     46     26
  DEL PEAK 20(10Q26.3) WILD-TYPE     40     21     15     30
D45V3, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           18                             40
  CLUS_2                           24                             21
  CLUS_3                           46                             15
  CLUS_4                           26                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10Q26.3) MUTATED       13      5     37     46      7      6
  DEL PEAK 20(10Q26.3) WILD-TYPE     11     30     12     22     15     16
D45V4, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           13                             11
  CLUS_2                            5                             30
  CLUS_3                           37                             12
  CLUS_4                           46                             22
  CLUS_5                            7                             15
  CLUS_6                            6                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q26.3) MUTATED       53     57     20
  DEL PEAK 20(10Q26.3) WILD-TYPE     61     20     44
D45V5, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           53                             61
  CLUS_2                           57                             20
  CLUS_3                           20                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10Q26.3) MUTATED       21      7     41      9     16     16
  DEL PEAK 20(10Q26.3) WILD-TYPE     26     14      8     37     14     13
                                vv
clus                             CLUS_7
  DEL PEAK 20(10Q26.3) MUTATED       20
  DEL PEAK 20(10Q26.3) WILD-TYPE     13
D45V6, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           21                             26
  CLUS_2                            7                             14
  CLUS_3                           41                              8
  CLUS_4                            9                             37
  CLUS_5                           16                             14
  CLUS_6                           16                             13
  CLUS_7                           20                             13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q26.3) MUTATED       37     27     66
  DEL PEAK 20(10Q26.3) WILD-TYPE     68     23     34
D45V7, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           37                             68
  CLUS_2                           27                             23
  CLUS_3                           66                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10Q26.3) MUTATED       37     14     76      3
  DEL PEAK 20(10Q26.3) WILD-TYPE     45     23     38     19
D45V8, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           37                             45
  CLUS_2                           14                             23
  CLUS_3                           76                             38
  CLUS_4                            3                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(10Q26.3) MUTATED       16     14     36     15     22
  DEL PEAK 20(10Q26.3) WILD-TYPE     42     13     11      8     17
D45V9, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           16                             42
  CLUS_2                           14                             13
  CLUS_3                           36                             11
  CLUS_4                           15                              8
  CLUS_5                           22                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(10Q26.3) MUTATED       25     38     11     24      5
  DEL PEAK 20(10Q26.3) WILD-TYPE     33     11     10     18     19
D45V10, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           25                             33
  CLUS_2                           38                             11
  CLUS_3                           11                             10
  CLUS_4                           24                             18
  CLUS_5                            5                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 21(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11P15.5) MUTATED       60      3     13     34
  DEL PEAK 21(11P15.5) WILD-TYPE     35     57     26     29
D46V1, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           60                             35
  CLUS_2                            3                             57
  CLUS_3                           13                             26
  CLUS_4                           34                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11P15.5) MUTATED       16     23     34     37
  DEL PEAK 21(11P15.5) WILD-TYPE     38     33     38     38
D46V2, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           16                             38
  CLUS_2                           23                             33
  CLUS_3                           34                             38
  CLUS_4                           37                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11P15.5) MUTATED       28     23     28     19
  DEL PEAK 21(11P15.5) WILD-TYPE     30     22     33     37
D46V3, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           28                             30
  CLUS_2                           23                             22
  CLUS_3                           28                             33
  CLUS_4                           19                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(11P15.5) MUTATED       19     12     22     29      7      9
  DEL PEAK 21(11P15.5) WILD-TYPE      5     23     27     39     15     13
D46V4, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           19                              5
  CLUS_2                           12                             23
  CLUS_3                           22                             27
  CLUS_4                           29                             39
  CLUS_5                            7                             15
  CLUS_6                            9                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P15.5) MUTATED       50     36     24
  DEL PEAK 21(11P15.5) WILD-TYPE     64     41     40
D46V5, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           50                             64
  CLUS_2                           36                             41
  CLUS_3                           24                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(11P15.5) MUTATED       27      5     25     18     12     11
  DEL PEAK 21(11P15.5) WILD-TYPE     20     16     24     28     18     18
                                vv
clus                             CLUS_7
  DEL PEAK 21(11P15.5) MUTATED       12
  DEL PEAK 21(11P15.5) WILD-TYPE     21
D46V6, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           27                             20
  CLUS_2                            5                             16
  CLUS_3                           25                             24
  CLUS_4                           18                             28
  CLUS_5                           12                             18
  CLUS_6                           11                             18
  CLUS_7                           12                             21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P15.5) MUTATED       40     25     43
  DEL PEAK 21(11P15.5) WILD-TYPE     65     25     57
D46V7, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           40                             65
  CLUS_2                           25                             25
  CLUS_3                           43                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11P15.5) MUTATED       37     13     52      6
  DEL PEAK 21(11P15.5) WILD-TYPE     45     24     62     16
D46V8, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           37                             45
  CLUS_2                           13                             24
  CLUS_3                           52                             62
  CLUS_4                            6                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(11P15.5) MUTATED       23     16     24     10     17
  DEL PEAK 21(11P15.5) WILD-TYPE     35     11     23     13     22
D46V9, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           23                             35
  CLUS_2                           16                             11
  CLUS_3                           24                             23
  CLUS_4                           10                             13
  CLUS_5                           17                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(11P15.5) MUTATED       26     22     10     23      9
  DEL PEAK 21(11P15.5) WILD-TYPE     32     27     11     19     15
D46V10, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           26                             32
  CLUS_2                           22                             27
  CLUS_3                           10                             11
  CLUS_4                           23                             19
  CLUS_5                            9                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 22(11Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(11Q23.1) MUTATED       63      7      8     40
  DEL PEAK 22(11Q23.1) WILD-TYPE     32     53     31     23
D47V1, multiclass
        clus
vv       DEL PEAK 22(11Q23.1) MUTATED DEL PEAK 22(11Q23.1) WILD-TYPE
  CLUS_1                           63                             32
  CLUS_2                            7                             53
  CLUS_3                            8                             31
  CLUS_4                           40                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(11Q23.1) MUTATED       22     21     27     48
  DEL PEAK 22(11Q23.1) WILD-TYPE     32     35     45     27
D47V2, multiclass
        clus
vv       DEL PEAK 22(11Q23.1) MUTATED DEL PEAK 22(11Q23.1) WILD-TYPE
  CLUS_1                           22                             32
  CLUS_2                           21                             35
  CLUS_3                           27                             45
  CLUS_4                           48                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(11Q23.1) MUTATED       29     24     20     29
  DEL PEAK 22(11Q23.1) WILD-TYPE     29     21     41     27
D47V3, multiclass
        clus
vv       DEL PEAK 22(11Q23.1) MUTATED DEL PEAK 22(11Q23.1) WILD-TYPE
  CLUS_1                           29                             29
  CLUS_2                           24                             21
  CLUS_3                           20                             41
  CLUS_4                           29                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(11Q23.1) MUTATED       17     19     26     20     12      8
  DEL PEAK 22(11Q23.1) WILD-TYPE      7     16     23     48     10     14
D47V4, multiclass
        clus
vv       DEL PEAK 22(11Q23.1) MUTATED DEL PEAK 22(11Q23.1) WILD-TYPE
  CLUS_1                           17                              7
  CLUS_2                           19                             16
  CLUS_3                           26                             23
  CLUS_4                           20                             48
  CLUS_5                           12                             10
  CLUS_6                            8                             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11Q23.1) MUTATED       64     28     25
  DEL PEAK 22(11Q23.1) WILD-TYPE     50     49     39
D47V5, multiclass
        clus
vv       DEL PEAK 22(11Q23.1) MUTATED DEL PEAK 22(11Q23.1) WILD-TYPE
  CLUS_1                           64                             50
  CLUS_2                           28                             49
  CLUS_3                           25                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(11Q23.1) MUTATED       32     12     18     21     11      9
  DEL PEAK 22(11Q23.1) WILD-TYPE     15      9     31     25     19     20
                                vv
clus                             CLUS_7
  DEL PEAK 22(11Q23.1) MUTATED       14
  DEL PEAK 22(11Q23.1) WILD-TYPE     19
D47V6, multiclass
        clus
vv       DEL PEAK 22(11Q23.1) MUTATED DEL PEAK 22(11Q23.1) WILD-TYPE
  CLUS_1                           32                             15
  CLUS_2                           12                              9
  CLUS_3                           18                             31
  CLUS_4                           21                             25
  CLUS_5                           11                             19
  CLUS_6                            9                             20
  CLUS_7                           14                             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11Q23.1) MUTATED       51     31     34
  DEL PEAK 22(11Q23.1) WILD-TYPE     54     19     66
D47V7, multiclass
        clus
vv       DEL PEAK 22(11Q23.1) MUTATED DEL PEAK 22(11Q23.1) WILD-TYPE
  CLUS_1                           51                             54
  CLUS_2                           31                             19
  CLUS_3                           34                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(11Q23.1) MUTATED       45     18     47      6
  DEL PEAK 22(11Q23.1) WILD-TYPE     37     19     67     16
D47V8, multiclass
        clus
vv       DEL PEAK 22(11Q23.1) MUTATED DEL PEAK 22(11Q23.1) WILD-TYPE
  CLUS_1                           45                             37
  CLUS_2                           18                             19
  CLUS_3                           47                             67
  CLUS_4                            6                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(11Q23.1) MUTATED       30     21     17     12     22
  DEL PEAK 22(11Q23.1) WILD-TYPE     28      6     30     11     17
D47V9, multiclass
        clus
vv       DEL PEAK 22(11Q23.1) MUTATED DEL PEAK 22(11Q23.1) WILD-TYPE
  CLUS_1                           30                             28
  CLUS_2                           21                              6
  CLUS_3                           17                             30
  CLUS_4                           12                             11
  CLUS_5                           22                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(11Q23.1) MUTATED       35     18     14     26      9
  DEL PEAK 22(11Q23.1) WILD-TYPE     23     31      7     16     15
D47V10, multiclass
        clus
vv       DEL PEAK 22(11Q23.1) MUTATED DEL PEAK 22(11Q23.1) WILD-TYPE
  CLUS_1                           35                             23
  CLUS_2                           18                             31
  CLUS_3                           14                              7
  CLUS_4                           26                             16
  CLUS_5                            9                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 23(11Q25) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(11Q25) MUTATED       67      7     10     39
  DEL PEAK 23(11Q25) WILD-TYPE     28     53     29     24
D48V1, multiclass
        clus
vv       DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE
  CLUS_1                         67                           28
  CLUS_2                          7                           53
  CLUS_3                         10                           29
  CLUS_4                         39                           24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(11Q25) MUTATED       25     21     27     50
  DEL PEAK 23(11Q25) WILD-TYPE     29     35     45     25
D48V2, multiclass
        clus
vv       DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE
  CLUS_1                         25                           29
  CLUS_2                         21                           35
  CLUS_3                         27                           45
  CLUS_4                         50                           25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(11Q25) MUTATED       27     26     20     35
  DEL PEAK 23(11Q25) WILD-TYPE     31     19     41     21
D48V3, multiclass
        clus
vv       DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE
  CLUS_1                         27                           31
  CLUS_2                         26                           19
  CLUS_3                         20                           41
  CLUS_4                         35                           21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(11Q25) MUTATED       16     18     31     20     15      8
  DEL PEAK 23(11Q25) WILD-TYPE      8     17     18     48      7     14
D48V4, multiclass
        clus
vv       DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE
  CLUS_1                         16                            8
  CLUS_2                         18                           17
  CLUS_3                         31                           18
  CLUS_4                         20                           48
  CLUS_5                         15                            7
  CLUS_6                          8                           14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q25) MUTATED       69     28     25
  DEL PEAK 23(11Q25) WILD-TYPE     45     49     39
D48V5, multiclass
        clus
vv       DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE
  CLUS_1                         69                           45
  CLUS_2                         28                           49
  CLUS_3                         25                           39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 23(11Q25) MUTATED       34     12     19     20     15      8     14
  DEL PEAK 23(11Q25) WILD-TYPE     13      9     30     26     15     21     19
D48V6, multiclass
        clus
vv       DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE
  CLUS_1                         34                           13
  CLUS_2                         12                            9
  CLUS_3                         19                           30
  CLUS_4                         20                           26
  CLUS_5                         15                           15
  CLUS_6                          8                           21
  CLUS_7                         14                           19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q25) MUTATED       51     34     36
  DEL PEAK 23(11Q25) WILD-TYPE     54     16     64
D48V7, multiclass
        clus
vv       DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE
  CLUS_1                         51                           54
  CLUS_2                         34                           16
  CLUS_3                         36                           64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(11Q25) MUTATED       45     19     51      6
  DEL PEAK 23(11Q25) WILD-TYPE     37     18     63     16
D48V8, multiclass
        clus
vv       DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE
  CLUS_1                         45                           37
  CLUS_2                         19                           18
  CLUS_3                         51                           63
  CLUS_4                          6                           16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(11Q25) MUTATED       29     20     18     14     24
  DEL PEAK 23(11Q25) WILD-TYPE     29      7     29      9     15
D48V9, multiclass
        clus
vv       DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE
  CLUS_1                         29                           29
  CLUS_2                         20                            7
  CLUS_3                         18                           29
  CLUS_4                         14                            9
  CLUS_5                         24                           15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(11Q25) MUTATED       35     19     17     25      9
  DEL PEAK 23(11Q25) WILD-TYPE     23     30      4     17     15
D48V10, multiclass
        clus
vv       DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE
  CLUS_1                         35                           23
  CLUS_2                         19                           30
  CLUS_3                         17                            4
  CLUS_4                         25                           17
  CLUS_5                          9                           15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 24(12P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(12P13.1) MUTATED       48      5      6     28
  DEL PEAK 24(12P13.1) WILD-TYPE     47     55     33     35
D49V1, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           48                             47
  CLUS_2                            5                             55
  CLUS_3                            6                             33
  CLUS_4                           28                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(12P13.1) MUTATED       11     13     23     40
  DEL PEAK 24(12P13.1) WILD-TYPE     43     43     49     35
D49V2, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           11                             43
  CLUS_2                           13                             43
  CLUS_3                           23                             49
  CLUS_4                           40                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(12P13.1) MUTATED       21     19     18     22
  DEL PEAK 24(12P13.1) WILD-TYPE     37     26     43     34
D49V3, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           21                             37
  CLUS_2                           19                             26
  CLUS_3                           18                             43
  CLUS_4                           22                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(12P13.1) MUTATED       12     15     21     20      7      5
  DEL PEAK 24(12P13.1) WILD-TYPE     12     20     28     48     15     17
D49V4, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           12                             12
  CLUS_2                           15                             20
  CLUS_3                           21                             28
  CLUS_4                           20                             48
  CLUS_5                            7                             15
  CLUS_6                            5                             17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(12P13.1) MUTATED       48     23     14
  DEL PEAK 24(12P13.1) WILD-TYPE     66     54     50
D49V5, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           48                             66
  CLUS_2                           23                             54
  CLUS_3                           14                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(12P13.1) MUTATED       27      6     14      8     11      9
  DEL PEAK 24(12P13.1) WILD-TYPE     20     15     35     38     19     20
                                vv
clus                             CLUS_7
  DEL PEAK 24(12P13.1) MUTATED       10
  DEL PEAK 24(12P13.1) WILD-TYPE     23
D49V6, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           27                             20
  CLUS_2                            6                             15
  CLUS_3                           14                             35
  CLUS_4                            8                             38
  CLUS_5                           11                             19
  CLUS_6                            9                             20
  CLUS_7                           10                             23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(12P13.1) MUTATED       37     21     28
  DEL PEAK 24(12P13.1) WILD-TYPE     68     29     72
D49V7, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           37                             68
  CLUS_2                           21                             29
  CLUS_3                           28                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(12P13.1) MUTATED       36     13     34      3
  DEL PEAK 24(12P13.1) WILD-TYPE     46     24     80     19
D49V8, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           36                             46
  CLUS_2                           13                             24
  CLUS_3                           34                             80
  CLUS_4                            3                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(12P13.1) MUTATED       17     15     13      6     15
  DEL PEAK 24(12P13.1) WILD-TYPE     41     12     34     17     24
D49V9, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           17                             41
  CLUS_2                           15                             12
  CLUS_3                           13                             34
  CLUS_4                            6                             17
  CLUS_5                           15                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(12P13.1) MUTATED       23     13      6     20      4
  DEL PEAK 24(12P13.1) WILD-TYPE     35     36     15     22     20
D49V10, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           23                             35
  CLUS_2                           13                             36
  CLUS_3                            6                             15
  CLUS_4                           20                             22
  CLUS_5                            4                             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 25(12Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(12Q12) MUTATED       21      2      9     24
  DEL PEAK 25(12Q12) WILD-TYPE     74     58     30     39
D50V1, multiclass
        clus
vv       DEL PEAK 25(12Q12) MUTATED DEL PEAK 25(12Q12) WILD-TYPE
  CLUS_1                         21                           74
  CLUS_2                          2                           58
  CLUS_3                          9                           30
  CLUS_4                         24                           39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(12Q12) MUTATED        4      5     22     25
  DEL PEAK 25(12Q12) WILD-TYPE     50     51     50     50
D50V2, multiclass
        clus
vv       DEL PEAK 25(12Q12) MUTATED DEL PEAK 25(12Q12) WILD-TYPE
  CLUS_1                          4                           50
  CLUS_2                          5                           51
  CLUS_3                         22                           50
  CLUS_4                         25                           50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(12Q12) MUTATED        9      9     15     13
  DEL PEAK 25(12Q12) WILD-TYPE     49     36     46     43
D50V3, multiclass
        clus
vv       DEL PEAK 25(12Q12) MUTATED DEL PEAK 25(12Q12) WILD-TYPE
  CLUS_1                          9                           49
  CLUS_2                          9                           36
  CLUS_3                         15                           46
  CLUS_4                         13                           43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(12Q12) MUTATED        4      7     13     14      5      3
  DEL PEAK 25(12Q12) WILD-TYPE     20     28     36     54     17     19
D50V4, multiclass
        clus
vv       DEL PEAK 25(12Q12) MUTATED DEL PEAK 25(12Q12) WILD-TYPE
  CLUS_1                          4                           20
  CLUS_2                          7                           28
  CLUS_3                         13                           36
  CLUS_4                         14                           54
  CLUS_5                          5                           17
  CLUS_6                          3                           19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12Q12) MUTATED       24     23      9
  DEL PEAK 25(12Q12) WILD-TYPE     90     54     55
D50V5, multiclass
        clus
vv       DEL PEAK 25(12Q12) MUTATED DEL PEAK 25(12Q12) WILD-TYPE
  CLUS_1                         24                           90
  CLUS_2                         23                           54
  CLUS_3                          9                           55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 25(12Q12) MUTATED       13      3     17      3      8      5      7
  DEL PEAK 25(12Q12) WILD-TYPE     34     18     32     43     22     24     26
D50V6, multiclass
        clus
vv       DEL PEAK 25(12Q12) MUTATED DEL PEAK 25(12Q12) WILD-TYPE
  CLUS_1                         13                           34
  CLUS_2                          3                           18
  CLUS_3                         17                           32
  CLUS_4                          3                           43
  CLUS_5                          8                           22
  CLUS_6                          5                           24
  CLUS_7                          7                           26
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12Q12) MUTATED       16     14     26
  DEL PEAK 25(12Q12) WILD-TYPE     89     36     74
D50V7, multiclass
        clus
vv       DEL PEAK 25(12Q12) MUTATED DEL PEAK 25(12Q12) WILD-TYPE
  CLUS_1                         16                           89
  CLUS_2                         14                           36
  CLUS_3                         26                           74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(12Q12) MUTATED       16      4     34      2
  DEL PEAK 25(12Q12) WILD-TYPE     66     33     80     20
D50V8, multiclass
        clus
vv       DEL PEAK 25(12Q12) MUTATED DEL PEAK 25(12Q12) WILD-TYPE
  CLUS_1                         16                           66
  CLUS_2                          4                           33
  CLUS_3                         34                           80
  CLUS_4                          2                           20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(12Q12) MUTATED        8      7     15      5      9
  DEL PEAK 25(12Q12) WILD-TYPE     50     20     32     18     30
D50V9, multiclass
        clus
vv       DEL PEAK 25(12Q12) MUTATED DEL PEAK 25(12Q12) WILD-TYPE
  CLUS_1                          8                           50
  CLUS_2                          7                           20
  CLUS_3                         15                           32
  CLUS_4                          5                           18
  CLUS_5                          9                           30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(12Q12) MUTATED       12     17      3     10      2
  DEL PEAK 25(12Q12) WILD-TYPE     46     32     18     32     22
D50V10, multiclass
        clus
vv       DEL PEAK 25(12Q12) MUTATED DEL PEAK 25(12Q12) WILD-TYPE
  CLUS_1                         12                           46
  CLUS_2                         17                           32
  CLUS_3                          3                           18
  CLUS_4                         10                           32
  CLUS_5                          2                           22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 26(12Q24.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(12Q24.33) MUTATED       34      2      7     27
  DEL PEAK 26(12Q24.33) WILD-TYPE     61     58     32     36
D51V1, multiclass
        clus
vv       DEL PEAK 26(12Q24.33) MUTATED DEL PEAK 26(12Q24.33) WILD-TYPE
  CLUS_1                            34                              61
  CLUS_2                             2                              58
  CLUS_3                             7                              32
  CLUS_4                            27                              36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(12Q24.33) MUTATED        7     13     24     26
  DEL PEAK 26(12Q24.33) WILD-TYPE     47     43     48     49
D51V2, multiclass
        clus
vv       DEL PEAK 26(12Q24.33) MUTATED DEL PEAK 26(12Q24.33) WILD-TYPE
  CLUS_1                             7                              47
  CLUS_2                            13                              43
  CLUS_3                            24                              48
  CLUS_4                            26                              49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(12Q24.33) MUTATED       15     16     19     13
  DEL PEAK 26(12Q24.33) WILD-TYPE     43     29     42     43
D51V3, multiclass
        clus
vv       DEL PEAK 26(12Q24.33) MUTATED DEL PEAK 26(12Q24.33) WILD-TYPE
  CLUS_1                            15                              43
  CLUS_2                            16                              29
  CLUS_3                            19                              42
  CLUS_4                            13                              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(12Q24.33) MUTATED        8      8     15     18      8      6
  DEL PEAK 26(12Q24.33) WILD-TYPE     16     27     34     50     14     16
D51V4, multiclass
        clus
vv       DEL PEAK 26(12Q24.33) MUTATED DEL PEAK 26(12Q24.33) WILD-TYPE
  CLUS_1                             8                              16
  CLUS_2                             8                              27
  CLUS_3                            15                              34
  CLUS_4                            18                              50
  CLUS_5                             8                              14
  CLUS_6                             6                              16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12Q24.33) MUTATED       30     24     16
  DEL PEAK 26(12Q24.33) WILD-TYPE     84     53     48
D51V5, multiclass
        clus
vv       DEL PEAK 26(12Q24.33) MUTATED DEL PEAK 26(12Q24.33) WILD-TYPE
  CLUS_1                            30                              84
  CLUS_2                            24                              53
  CLUS_3                            16                              48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(12Q24.33) MUTATED       18      3     21      9      9      3
  DEL PEAK 26(12Q24.33) WILD-TYPE     29     18     28     37     21     26
                                 vv
clus                              CLUS_7
  DEL PEAK 26(12Q24.33) MUTATED        7
  DEL PEAK 26(12Q24.33) WILD-TYPE     26
D51V6, multiclass
        clus
vv       DEL PEAK 26(12Q24.33) MUTATED DEL PEAK 26(12Q24.33) WILD-TYPE
  CLUS_1                            18                              29
  CLUS_2                             3                              18
  CLUS_3                            21                              28
  CLUS_4                             9                              37
  CLUS_5                             9                              21
  CLUS_6                             3                              26
  CLUS_7                             7                              26
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12Q24.33) MUTATED       27     11     32
  DEL PEAK 26(12Q24.33) WILD-TYPE     78     39     68
D51V7, multiclass
        clus
vv       DEL PEAK 26(12Q24.33) MUTATED DEL PEAK 26(12Q24.33) WILD-TYPE
  CLUS_1                            27                              78
  CLUS_2                            11                              39
  CLUS_3                            32                              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(12Q24.33) MUTATED       25      5     36      4
  DEL PEAK 26(12Q24.33) WILD-TYPE     57     32     78     18
D51V8, multiclass
        clus
vv       DEL PEAK 26(12Q24.33) MUTATED DEL PEAK 26(12Q24.33) WILD-TYPE
  CLUS_1                            25                              57
  CLUS_2                             5                              32
  CLUS_3                            36                              78
  CLUS_4                             4                              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(12Q24.33) MUTATED       15     12     16      6      6
  DEL PEAK 26(12Q24.33) WILD-TYPE     43     15     31     17     33
D51V9, multiclass
        clus
vv       DEL PEAK 26(12Q24.33) MUTATED DEL PEAK 26(12Q24.33) WILD-TYPE
  CLUS_1                            15                              43
  CLUS_2                            12                              15
  CLUS_3                            16                              31
  CLUS_4                             6                              17
  CLUS_5                             6                              33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(12Q24.33) MUTATED       18     17      5      9      6
  DEL PEAK 26(12Q24.33) WILD-TYPE     40     32     16     33     18
D51V10, multiclass
        clus
vv       DEL PEAK 26(12Q24.33) MUTATED DEL PEAK 26(12Q24.33) WILD-TYPE
  CLUS_1                            18                              40
  CLUS_2                            17                              32
  CLUS_3                             5                              16
  CLUS_4                             9                              33
  CLUS_5                             6                              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 27(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(13Q14.2) MUTATED       78      8     35     59
  DEL PEAK 27(13Q14.2) WILD-TYPE     17     52      4      4
D52V1, multiclass
        clus
vv       DEL PEAK 27(13Q14.2) MUTATED DEL PEAK 27(13Q14.2) WILD-TYPE
  CLUS_1                           78                             17
  CLUS_2                            8                             52
  CLUS_3                           35                              4
  CLUS_4                           59                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(13Q14.2) MUTATED       26     24     67     63
  DEL PEAK 27(13Q14.2) WILD-TYPE     28     32      5     12
D52V2, multiclass
        clus
vv       DEL PEAK 27(13Q14.2) MUTATED DEL PEAK 27(13Q14.2) WILD-TYPE
  CLUS_1                           26                             28
  CLUS_2                           24                             32
  CLUS_3                           67                              5
  CLUS_4                           63                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(13Q14.2) MUTATED       27     34     54     39
  DEL PEAK 27(13Q14.2) WILD-TYPE     31     11      7     17
D52V3, multiclass
        clus
vv       DEL PEAK 27(13Q14.2) MUTATED DEL PEAK 27(13Q14.2) WILD-TYPE
  CLUS_1                           27                             31
  CLUS_2                           34                             11
  CLUS_3                           54                              7
  CLUS_4                           39                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(13Q14.2) MUTATED       15     20     40     55     15      9
  DEL PEAK 27(13Q14.2) WILD-TYPE      9     15      9     13      7     13
D52V4, multiclass
        clus
vv       DEL PEAK 27(13Q14.2) MUTATED DEL PEAK 27(13Q14.2) WILD-TYPE
  CLUS_1                           15                              9
  CLUS_2                           20                             15
  CLUS_3                           40                              9
  CLUS_4                           55                             13
  CLUS_5                           15                              7
  CLUS_6                            9                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(13Q14.2) MUTATED       79     69     30
  DEL PEAK 27(13Q14.2) WILD-TYPE     35      8     34
D52V5, multiclass
        clus
vv       DEL PEAK 27(13Q14.2) MUTATED DEL PEAK 27(13Q14.2) WILD-TYPE
  CLUS_1                           79                             35
  CLUS_2                           69                              8
  CLUS_3                           30                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(13Q14.2) MUTATED       34     10     47     19     23     22
  DEL PEAK 27(13Q14.2) WILD-TYPE     13     11      2     27      7      7
                                vv
clus                             CLUS_7
  DEL PEAK 27(13Q14.2) MUTATED       23
  DEL PEAK 27(13Q14.2) WILD-TYPE     10
D52V6, multiclass
        clus
vv       DEL PEAK 27(13Q14.2) MUTATED DEL PEAK 27(13Q14.2) WILD-TYPE
  CLUS_1                           34                             13
  CLUS_2                           10                             11
  CLUS_3                           47                              2
  CLUS_4                           19                             27
  CLUS_5                           23                              7
  CLUS_6                           22                              7
  CLUS_7                           23                             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(13Q14.2) MUTATED       59     36     83
  DEL PEAK 27(13Q14.2) WILD-TYPE     46     14     17
D52V7, multiclass
        clus
vv       DEL PEAK 27(13Q14.2) MUTATED DEL PEAK 27(13Q14.2) WILD-TYPE
  CLUS_1                           59                             46
  CLUS_2                           36                             14
  CLUS_3                           83                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(13Q14.2) MUTATED       54     20     97      7
  DEL PEAK 27(13Q14.2) WILD-TYPE     28     17     17     15
D52V8, multiclass
        clus
vv       DEL PEAK 27(13Q14.2) MUTATED DEL PEAK 27(13Q14.2) WILD-TYPE
  CLUS_1                           54                             28
  CLUS_2                           20                             17
  CLUS_3                           97                             17
  CLUS_4                            7                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(13Q14.2) MUTATED       31     21     42     16     31
  DEL PEAK 27(13Q14.2) WILD-TYPE     27      6      5      7      8
D52V9, multiclass
        clus
vv       DEL PEAK 27(13Q14.2) MUTATED DEL PEAK 27(13Q14.2) WILD-TYPE
  CLUS_1                           31                             27
  CLUS_2                           21                              6
  CLUS_3                           42                              5
  CLUS_4                           16                              7
  CLUS_5                           31                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(13Q14.2) MUTATED       39     44     17     32      9
  DEL PEAK 27(13Q14.2) WILD-TYPE     19      5      4     10     15
D52V10, multiclass
        clus
vv       DEL PEAK 27(13Q14.2) MUTATED DEL PEAK 27(13Q14.2) WILD-TYPE
  CLUS_1                           39                             19
  CLUS_2                           44                              5
  CLUS_3                           17                              4
  CLUS_4                           32                             10
  CLUS_5                            9                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 28(14Q24.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(14Q24.1) MUTATED       31      7     14     28
  DEL PEAK 28(14Q24.1) WILD-TYPE     64     53     25     35
D53V1, multiclass
        clus
vv       DEL PEAK 28(14Q24.1) MUTATED DEL PEAK 28(14Q24.1) WILD-TYPE
  CLUS_1                           31                             64
  CLUS_2                            7                             53
  CLUS_3                           14                             25
  CLUS_4                           28                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(14Q24.1) MUTATED       11     17     26     26
  DEL PEAK 28(14Q24.1) WILD-TYPE     43     39     46     49
D53V2, multiclass
        clus
vv       DEL PEAK 28(14Q24.1) MUTATED DEL PEAK 28(14Q24.1) WILD-TYPE
  CLUS_1                           11                             43
  CLUS_2                           17                             39
  CLUS_3                           26                             46
  CLUS_4                           26                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(14Q24.1) MUTATED       19     16     24     14
  DEL PEAK 28(14Q24.1) WILD-TYPE     39     29     37     42
D53V3, multiclass
        clus
vv       DEL PEAK 28(14Q24.1) MUTATED DEL PEAK 28(14Q24.1) WILD-TYPE
  CLUS_1                           19                             39
  CLUS_2                           16                             29
  CLUS_3                           24                             37
  CLUS_4                           14                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(14Q24.1) MUTATED       10     11     12     24      9      7
  DEL PEAK 28(14Q24.1) WILD-TYPE     14     24     37     44     13     15
D53V4, multiclass
        clus
vv       DEL PEAK 28(14Q24.1) MUTATED DEL PEAK 28(14Q24.1) WILD-TYPE
  CLUS_1                           10                             14
  CLUS_2                           11                             24
  CLUS_3                           12                             37
  CLUS_4                           24                             44
  CLUS_5                            9                             13
  CLUS_6                            7                             15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(14Q24.1) MUTATED       33     30     17
  DEL PEAK 28(14Q24.1) WILD-TYPE     81     47     47
D53V5, multiclass
        clus
vv       DEL PEAK 28(14Q24.1) MUTATED DEL PEAK 28(14Q24.1) WILD-TYPE
  CLUS_1                           33                             81
  CLUS_2                           30                             47
  CLUS_3                           17                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(14Q24.1) MUTATED       21      4      9     11      3     21
  DEL PEAK 28(14Q24.1) WILD-TYPE     26     17     40     35     27      8
                                vv
clus                             CLUS_7
  DEL PEAK 28(14Q24.1) MUTATED       11
  DEL PEAK 28(14Q24.1) WILD-TYPE     22
D53V6, multiclass
        clus
vv       DEL PEAK 28(14Q24.1) MUTATED DEL PEAK 28(14Q24.1) WILD-TYPE
  CLUS_1                           21                             26
  CLUS_2                            4                             17
  CLUS_3                            9                             40
  CLUS_4                           11                             35
  CLUS_5                            3                             27
  CLUS_6                           21                              8
  CLUS_7                           11                             22
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(14Q24.1) MUTATED       24     20     36
  DEL PEAK 28(14Q24.1) WILD-TYPE     81     30     64
D53V7, multiclass
        clus
vv       DEL PEAK 28(14Q24.1) MUTATED DEL PEAK 28(14Q24.1) WILD-TYPE
  CLUS_1                           24                             81
  CLUS_2                           20                             30
  CLUS_3                           36                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(14Q24.1) MUTATED       22     12     45      1
  DEL PEAK 28(14Q24.1) WILD-TYPE     60     25     69     21
D53V8, multiclass
        clus
vv       DEL PEAK 28(14Q24.1) MUTATED DEL PEAK 28(14Q24.1) WILD-TYPE
  CLUS_1                           22                             60
  CLUS_2                           12                             25
  CLUS_3                           45                             69
  CLUS_4                            1                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(14Q24.1) MUTATED       10     17     16     10      9
  DEL PEAK 28(14Q24.1) WILD-TYPE     48     10     31     13     30
D53V9, multiclass
        clus
vv       DEL PEAK 28(14Q24.1) MUTATED DEL PEAK 28(14Q24.1) WILD-TYPE
  CLUS_1                           10                             48
  CLUS_2                           17                             10
  CLUS_3                           16                             31
  CLUS_4                           10                             13
  CLUS_5                            9                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(14Q24.1) MUTATED       19     17     10     14      2
  DEL PEAK 28(14Q24.1) WILD-TYPE     39     32     11     28     22
D53V10, multiclass
        clus
vv       DEL PEAK 28(14Q24.1) MUTATED DEL PEAK 28(14Q24.1) WILD-TYPE
  CLUS_1                           19                             39
  CLUS_2                           17                             32
  CLUS_3                           10                             11
  CLUS_4                           14                             28
  CLUS_5                            2                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 29(15Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(15Q11.2) MUTATED       23      5      3     16
  DEL PEAK 29(15Q11.2) WILD-TYPE     72     55     36     47
D54V1, multiclass
        clus
vv       DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE
  CLUS_1                           23                             72
  CLUS_2                            5                             55
  CLUS_3                            3                             36
  CLUS_4                           16                             47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(15Q11.2) MUTATED       11      7      7     22
  DEL PEAK 29(15Q11.2) WILD-TYPE     43     49     65     53
D54V2, multiclass
        clus
vv       DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE
  CLUS_1                           11                             43
  CLUS_2                            7                             49
  CLUS_3                            7                             65
  CLUS_4                           22                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(15Q11.2) MUTATED        7     12      7     17
  DEL PEAK 29(15Q11.2) WILD-TYPE     51     33     54     39
D54V3, multiclass
        clus
vv       DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE
  CLUS_1                            7                             51
  CLUS_2                           12                             33
  CLUS_3                            7                             54
  CLUS_4                           17                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(15Q11.2) MUTATED        5      5     17      6      4      6
  DEL PEAK 29(15Q11.2) WILD-TYPE     19     30     32     62     18     16
D54V4, multiclass
        clus
vv       DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE
  CLUS_1                            5                             19
  CLUS_2                            5                             30
  CLUS_3                           17                             32
  CLUS_4                            6                             62
  CLUS_5                            4                             18
  CLUS_6                            6                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(15Q11.2) MUTATED       30      7     10
  DEL PEAK 29(15Q11.2) WILD-TYPE     84     70     54
D54V5, multiclass
        clus
vv       DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE
  CLUS_1                           30                             84
  CLUS_2                            7                             70
  CLUS_3                           10                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(15Q11.2) MUTATED        8      4      2      7      9      5
  DEL PEAK 29(15Q11.2) WILD-TYPE     39     17     47     39     21     24
                                vv
clus                             CLUS_7
  DEL PEAK 29(15Q11.2) MUTATED       12
  DEL PEAK 29(15Q11.2) WILD-TYPE     21
D54V6, multiclass
        clus
vv       DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE
  CLUS_1                            8                             39
  CLUS_2                            4                             17
  CLUS_3                            2                             47
  CLUS_4                            7                             39
  CLUS_5                            9                             21
  CLUS_6                            5                             24
  CLUS_7                           12                             21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(15Q11.2) MUTATED       19     16     12
  DEL PEAK 29(15Q11.2) WILD-TYPE     86     34     88
D54V7, multiclass
        clus
vv       DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE
  CLUS_1                           19                             86
  CLUS_2                           16                             34
  CLUS_3                           12                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(15Q11.2) MUTATED       19      8     19      1
  DEL PEAK 29(15Q11.2) WILD-TYPE     63     29     95     21
D54V8, multiclass
        clus
vv       DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE
  CLUS_1                           19                             63
  CLUS_2                            8                             29
  CLUS_3                           19                             95
  CLUS_4                            1                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(15Q11.2) MUTATED        5      8      4      8     14
  DEL PEAK 29(15Q11.2) WILD-TYPE     53     19     43     15     25
D54V9, multiclass
        clus
vv       DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE
  CLUS_1                            5                             53
  CLUS_2                            8                             19
  CLUS_3                            4                             43
  CLUS_4                            8                             15
  CLUS_5                           14                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(15Q11.2) MUTATED       10      5      7     14      3
  DEL PEAK 29(15Q11.2) WILD-TYPE     48     44     14     28     21
D54V10, multiclass
        clus
vv       DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE
  CLUS_1                           10                             48
  CLUS_2                            5                             44
  CLUS_3                            7                             14
  CLUS_4                           14                             28
  CLUS_5                            3                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 30(16Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(16Q11.2) MUTATED       50      6     30     44
  DEL PEAK 30(16Q11.2) WILD-TYPE     45     54      9     19
D55V1, multiclass
        clus
vv       DEL PEAK 30(16Q11.2) MUTATED DEL PEAK 30(16Q11.2) WILD-TYPE
  CLUS_1                           50                             45
  CLUS_2                            6                             54
  CLUS_3                           30                              9
  CLUS_4                           44                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(16Q11.2) MUTATED       20     14     50     46
  DEL PEAK 30(16Q11.2) WILD-TYPE     34     42     22     29
D55V2, multiclass
        clus
vv       DEL PEAK 30(16Q11.2) MUTATED DEL PEAK 30(16Q11.2) WILD-TYPE
  CLUS_1                           20                             34
  CLUS_2                           14                             42
  CLUS_3                           50                             22
  CLUS_4                           46                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(16Q11.2) MUTATED       20     23     38     29
  DEL PEAK 30(16Q11.2) WILD-TYPE     38     22     23     27
D55V3, multiclass
        clus
vv       DEL PEAK 30(16Q11.2) MUTATED DEL PEAK 30(16Q11.2) WILD-TYPE
  CLUS_1                           20                             38
  CLUS_2                           23                             22
  CLUS_3                           38                             23
  CLUS_4                           29                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(16Q11.2) MUTATED       13     11     33     39      7      7
  DEL PEAK 30(16Q11.2) WILD-TYPE     11     24     16     29     15     15
D55V4, multiclass
        clus
vv       DEL PEAK 30(16Q11.2) MUTATED DEL PEAK 30(16Q11.2) WILD-TYPE
  CLUS_1                           13                             11
  CLUS_2                           11                             24
  CLUS_3                           33                             16
  CLUS_4                           39                             29
  CLUS_5                            7                             15
  CLUS_6                            7                             15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(16Q11.2) MUTATED       58     50     21
  DEL PEAK 30(16Q11.2) WILD-TYPE     56     27     43
D55V5, multiclass
        clus
vv       DEL PEAK 30(16Q11.2) MUTATED DEL PEAK 30(16Q11.2) WILD-TYPE
  CLUS_1                           58                             56
  CLUS_2                           50                             27
  CLUS_3                           21                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(16Q11.2) MUTATED       24      7     34     10     18     17
  DEL PEAK 30(16Q11.2) WILD-TYPE     23     14     15     36     12     12
                                vv
clus                             CLUS_7
  DEL PEAK 30(16Q11.2) MUTATED       19
  DEL PEAK 30(16Q11.2) WILD-TYPE     14
D55V6, multiclass
        clus
vv       DEL PEAK 30(16Q11.2) MUTATED DEL PEAK 30(16Q11.2) WILD-TYPE
  CLUS_1                           24                             23
  CLUS_2                            7                             14
  CLUS_3                           34                             15
  CLUS_4                           10                             36
  CLUS_5                           18                             12
  CLUS_6                           17                             12
  CLUS_7                           19                             14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(16Q11.2) MUTATED       40     30     59
  DEL PEAK 30(16Q11.2) WILD-TYPE     65     20     41
D55V7, multiclass
        clus
vv       DEL PEAK 30(16Q11.2) MUTATED DEL PEAK 30(16Q11.2) WILD-TYPE
  CLUS_1                           40                             65
  CLUS_2                           30                             20
  CLUS_3                           59                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(16Q11.2) MUTATED       38     11     73      7
  DEL PEAK 30(16Q11.2) WILD-TYPE     44     26     41     15
D55V8, multiclass
        clus
vv       DEL PEAK 30(16Q11.2) MUTATED DEL PEAK 30(16Q11.2) WILD-TYPE
  CLUS_1                           38                             44
  CLUS_2                           11                             26
  CLUS_3                           73                             41
  CLUS_4                            7                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(16Q11.2) MUTATED       21     13     36     14     23
  DEL PEAK 30(16Q11.2) WILD-TYPE     37     14     11      9     16
D55V9, multiclass
        clus
vv       DEL PEAK 30(16Q11.2) MUTATED DEL PEAK 30(16Q11.2) WILD-TYPE
  CLUS_1                           21                             37
  CLUS_2                           13                             14
  CLUS_3                           36                             11
  CLUS_4                           14                              9
  CLUS_5                           23                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(16Q11.2) MUTATED       25     39     13     25      5
  DEL PEAK 30(16Q11.2) WILD-TYPE     33     10      8     17     19
D55V10, multiclass
        clus
vv       DEL PEAK 30(16Q11.2) MUTATED DEL PEAK 30(16Q11.2) WILD-TYPE
  CLUS_1                           25                             33
  CLUS_2                           39                             10
  CLUS_3                           13                              8
  CLUS_4                           25                             17
  CLUS_5                            5                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 31(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(16Q23.1) MUTATED       56      6     29     43
  DEL PEAK 31(16Q23.1) WILD-TYPE     39     54     10     20
D56V1, multiclass
        clus
vv       DEL PEAK 31(16Q23.1) MUTATED DEL PEAK 31(16Q23.1) WILD-TYPE
  CLUS_1                           56                             39
  CLUS_2                            6                             54
  CLUS_3                           29                             10
  CLUS_4                           43                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(16Q23.1) MUTATED       21     16     50     47
  DEL PEAK 31(16Q23.1) WILD-TYPE     33     40     22     28
D56V2, multiclass
        clus
vv       DEL PEAK 31(16Q23.1) MUTATED DEL PEAK 31(16Q23.1) WILD-TYPE
  CLUS_1                           21                             33
  CLUS_2                           16                             40
  CLUS_3                           50                             22
  CLUS_4                           47                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(16Q23.1) MUTATED       21     26     40     29
  DEL PEAK 31(16Q23.1) WILD-TYPE     37     19     21     27
D56V3, multiclass
        clus
vv       DEL PEAK 31(16Q23.1) MUTATED DEL PEAK 31(16Q23.1) WILD-TYPE
  CLUS_1                           21                             37
  CLUS_2                           26                             19
  CLUS_3                           40                             21
  CLUS_4                           29                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(16Q23.1) MUTATED       13     14     32     40      9      8
  DEL PEAK 31(16Q23.1) WILD-TYPE     11     21     17     28     13     14
D56V4, multiclass
        clus
vv       DEL PEAK 31(16Q23.1) MUTATED DEL PEAK 31(16Q23.1) WILD-TYPE
  CLUS_1                           13                             11
  CLUS_2                           14                             21
  CLUS_3                           32                             17
  CLUS_4                           40                             28
  CLUS_5                            9                             13
  CLUS_6                            8                             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(16Q23.1) MUTATED       59     51     23
  DEL PEAK 31(16Q23.1) WILD-TYPE     55     26     41
D56V5, multiclass
        clus
vv       DEL PEAK 31(16Q23.1) MUTATED DEL PEAK 31(16Q23.1) WILD-TYPE
  CLUS_1                           59                             55
  CLUS_2                           51                             26
  CLUS_3                           23                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(16Q23.1) MUTATED       28      7     34     12     18     17
  DEL PEAK 31(16Q23.1) WILD-TYPE     19     14     15     34     12     12
                                vv
clus                             CLUS_7
  DEL PEAK 31(16Q23.1) MUTATED       17
  DEL PEAK 31(16Q23.1) WILD-TYPE     16
D56V6, multiclass
        clus
vv       DEL PEAK 31(16Q23.1) MUTATED DEL PEAK 31(16Q23.1) WILD-TYPE
  CLUS_1                           28                             19
  CLUS_2                            7                             14
  CLUS_3                           34                             15
  CLUS_4                           12                             34
  CLUS_5                           18                             12
  CLUS_6                           17                             12
  CLUS_7                           17                             16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(16Q23.1) MUTATED       42     31     60
  DEL PEAK 31(16Q23.1) WILD-TYPE     63     19     40
D56V7, multiclass
        clus
vv       DEL PEAK 31(16Q23.1) MUTATED DEL PEAK 31(16Q23.1) WILD-TYPE
  CLUS_1                           42                             63
  CLUS_2                           31                             19
  CLUS_3                           60                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(16Q23.1) MUTATED       40     12     75      6
  DEL PEAK 31(16Q23.1) WILD-TYPE     42     25     39     16
D56V8, multiclass
        clus
vv       DEL PEAK 31(16Q23.1) MUTATED DEL PEAK 31(16Q23.1) WILD-TYPE
  CLUS_1                           40                             42
  CLUS_2                           12                             25
  CLUS_3                           75                             39
  CLUS_4                            6                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(16Q23.1) MUTATED       19     14     37     14     25
  DEL PEAK 31(16Q23.1) WILD-TYPE     39     13     10      9     14
D56V9, multiclass
        clus
vv       DEL PEAK 31(16Q23.1) MUTATED DEL PEAK 31(16Q23.1) WILD-TYPE
  CLUS_1                           19                             39
  CLUS_2                           14                             13
  CLUS_3                           37                             10
  CLUS_4                           14                              9
  CLUS_5                           25                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(16Q23.1) MUTATED       23     39     13     28      6
  DEL PEAK 31(16Q23.1) WILD-TYPE     35     10      8     14     18
D56V10, multiclass
        clus
vv       DEL PEAK 31(16Q23.1) MUTATED DEL PEAK 31(16Q23.1) WILD-TYPE
  CLUS_1                           23                             35
  CLUS_2                           39                             10
  CLUS_3                           13                              8
  CLUS_4                           28                             14
  CLUS_5                            6                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 32(17P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(17P13.1) MUTATED       46      7     31     45
  DEL PEAK 32(17P13.1) WILD-TYPE     49     53      8     18
D57V1, multiclass
        clus
vv       DEL PEAK 32(17P13.1) MUTATED DEL PEAK 32(17P13.1) WILD-TYPE
  CLUS_1                           46                             49
  CLUS_2                            7                             53
  CLUS_3                           31                              8
  CLUS_4                           45                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(17P13.1) MUTATED       22     19     54     34
  DEL PEAK 32(17P13.1) WILD-TYPE     32     37     18     41
D57V2, multiclass
        clus
vv       DEL PEAK 32(17P13.1) MUTATED DEL PEAK 32(17P13.1) WILD-TYPE
  CLUS_1                           22                             32
  CLUS_2                           19                             37
  CLUS_3                           54                             18
  CLUS_4                           34                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(17P13.1) MUTATED       19     21     40     28
  DEL PEAK 32(17P13.1) WILD-TYPE     39     24     21     28
D57V3, multiclass
        clus
vv       DEL PEAK 32(17P13.1) MUTATED DEL PEAK 32(17P13.1) WILD-TYPE
  CLUS_1                           19                             39
  CLUS_2                           21                             24
  CLUS_3                           40                             21
  CLUS_4                           28                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(17P13.1) MUTATED       10      8     34     41      6      9
  DEL PEAK 32(17P13.1) WILD-TYPE     14     27     15     27     16     13
D57V4, multiclass
        clus
vv       DEL PEAK 32(17P13.1) MUTATED DEL PEAK 32(17P13.1) WILD-TYPE
  CLUS_1                           10                             14
  CLUS_2                            8                             27
  CLUS_3                           34                             15
  CLUS_4                           41                             27
  CLUS_5                            6                             16
  CLUS_6                            9                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(17P13.1) MUTATED       51     55     21
  DEL PEAK 32(17P13.1) WILD-TYPE     63     22     43
D57V5, multiclass
        clus
vv       DEL PEAK 32(17P13.1) MUTATED DEL PEAK 32(17P13.1) WILD-TYPE
  CLUS_1                           51                             63
  CLUS_2                           55                             22
  CLUS_3                           21                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(17P13.1) MUTATED       18      8     40     16     16     14
  DEL PEAK 32(17P13.1) WILD-TYPE     29     13      9     30     14     15
                                vv
clus                             CLUS_7
  DEL PEAK 32(17P13.1) MUTATED       15
  DEL PEAK 32(17P13.1) WILD-TYPE     18
D57V6, multiclass
        clus
vv       DEL PEAK 32(17P13.1) MUTATED DEL PEAK 32(17P13.1) WILD-TYPE
  CLUS_1                           18                             29
  CLUS_2                            8                             13
  CLUS_3                           40                              9
  CLUS_4                           16                             30
  CLUS_5                           16                             14
  CLUS_6                           14                             15
  CLUS_7                           15                             18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(17P13.1) MUTATED       34     29     64
  DEL PEAK 32(17P13.1) WILD-TYPE     71     21     36
D57V7, multiclass
        clus
vv       DEL PEAK 32(17P13.1) MUTATED DEL PEAK 32(17P13.1) WILD-TYPE
  CLUS_1                           34                             71
  CLUS_2                           29                             21
  CLUS_3                           64                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(17P13.1) MUTATED       30     16     75      6
  DEL PEAK 32(17P13.1) WILD-TYPE     52     21     39     16
D57V8, multiclass
        clus
vv       DEL PEAK 32(17P13.1) MUTATED DEL PEAK 32(17P13.1) WILD-TYPE
  CLUS_1                           30                             52
  CLUS_2                           16                             21
  CLUS_3                           75                             39
  CLUS_4                            6                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(17P13.1) MUTATED       19     11     34     14     22
  DEL PEAK 32(17P13.1) WILD-TYPE     39     16     13      9     17
D57V9, multiclass
        clus
vv       DEL PEAK 32(17P13.1) MUTATED DEL PEAK 32(17P13.1) WILD-TYPE
  CLUS_1                           19                             39
  CLUS_2                           11                             16
  CLUS_3                           34                             13
  CLUS_4                           14                              9
  CLUS_5                           22                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(17P13.1) MUTATED       19     36     12     25      8
  DEL PEAK 32(17P13.1) WILD-TYPE     39     13      9     17     16
D57V10, multiclass
        clus
vv       DEL PEAK 32(17P13.1) MUTATED DEL PEAK 32(17P13.1) WILD-TYPE
  CLUS_1                           19                             39
  CLUS_2                           36                             13
  CLUS_3                           12                              9
  CLUS_4                           25                             17
  CLUS_5                            8                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 33(17Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(17Q11.2) MUTATED       50      3      8     20
  DEL PEAK 33(17Q11.2) WILD-TYPE     45     57     31     43
D58V1, multiclass
        clus
vv       DEL PEAK 33(17Q11.2) MUTATED DEL PEAK 33(17Q11.2) WILD-TYPE
  CLUS_1                           50                             45
  CLUS_2                            3                             57
  CLUS_3                            8                             31
  CLUS_4                           20                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(17Q11.2) MUTATED       13     16     10     42
  DEL PEAK 33(17Q11.2) WILD-TYPE     41     40     62     33
D58V2, multiclass
        clus
vv       DEL PEAK 33(17Q11.2) MUTATED DEL PEAK 33(17Q11.2) WILD-TYPE
  CLUS_1                           13                             41
  CLUS_2                           16                             40
  CLUS_3                           10                             62
  CLUS_4                           42                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(17Q11.2) MUTATED       21     23      9     22
  DEL PEAK 33(17Q11.2) WILD-TYPE     37     22     52     34
D58V3, multiclass
        clus
vv       DEL PEAK 33(17Q11.2) MUTATED DEL PEAK 33(17Q11.2) WILD-TYPE
  CLUS_1                           21                             37
  CLUS_2                           23                             22
  CLUS_3                            9                             52
  CLUS_4                           22                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(17Q11.2) MUTATED       12      8     32      9      8      6
  DEL PEAK 33(17Q11.2) WILD-TYPE     12     27     17     59     14     16
D58V4, multiclass
        clus
vv       DEL PEAK 33(17Q11.2) MUTATED DEL PEAK 33(17Q11.2) WILD-TYPE
  CLUS_1                           12                             12
  CLUS_2                            8                             27
  CLUS_3                           32                             17
  CLUS_4                            9                             59
  CLUS_5                            8                             14
  CLUS_6                            6                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(17Q11.2) MUTATED       52     10     19
  DEL PEAK 33(17Q11.2) WILD-TYPE     62     67     45
D58V5, multiclass
        clus
vv       DEL PEAK 33(17Q11.2) MUTATED DEL PEAK 33(17Q11.2) WILD-TYPE
  CLUS_1                           52                             62
  CLUS_2                           10                             67
  CLUS_3                           19                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(17Q11.2) MUTATED       24      6      7     12     15      3
  DEL PEAK 33(17Q11.2) WILD-TYPE     23     15     42     34     15     26
                                vv
clus                             CLUS_7
  DEL PEAK 33(17Q11.2) MUTATED       14
  DEL PEAK 33(17Q11.2) WILD-TYPE     19
D58V6, multiclass
        clus
vv       DEL PEAK 33(17Q11.2) MUTATED DEL PEAK 33(17Q11.2) WILD-TYPE
  CLUS_1                           24                             23
  CLUS_2                            6                             15
  CLUS_3                            7                             42
  CLUS_4                           12                             34
  CLUS_5                           15                             15
  CLUS_6                            3                             26
  CLUS_7                           14                             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(17Q11.2) MUTATED       37     24     19
  DEL PEAK 33(17Q11.2) WILD-TYPE     68     26     81
D58V7, multiclass
        clus
vv       DEL PEAK 33(17Q11.2) MUTATED DEL PEAK 33(17Q11.2) WILD-TYPE
  CLUS_1                           37                             68
  CLUS_2                           24                             26
  CLUS_3                           19                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(17Q11.2) MUTATED       34     11     29      6
  DEL PEAK 33(17Q11.2) WILD-TYPE     48     26     85     16
D58V8, multiclass
        clus
vv       DEL PEAK 33(17Q11.2) MUTATED DEL PEAK 33(17Q11.2) WILD-TYPE
  CLUS_1                           34                             48
  CLUS_2                           11                             26
  CLUS_3                           29                             85
  CLUS_4                            6                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(17Q11.2) MUTATED       17     15      6     10     17
  DEL PEAK 33(17Q11.2) WILD-TYPE     41     12     41     13     22
D58V9, multiclass
        clus
vv       DEL PEAK 33(17Q11.2) MUTATED DEL PEAK 33(17Q11.2) WILD-TYPE
  CLUS_1                           17                             41
  CLUS_2                           15                             12
  CLUS_3                            6                             41
  CLUS_4                           10                             13
  CLUS_5                           17                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(17Q11.2) MUTATED       21      6     10     20      8
  DEL PEAK 33(17Q11.2) WILD-TYPE     37     43     11     22     16
D58V10, multiclass
        clus
vv       DEL PEAK 33(17Q11.2) MUTATED DEL PEAK 33(17Q11.2) WILD-TYPE
  CLUS_1                           21                             37
  CLUS_2                            6                             43
  CLUS_3                           10                             11
  CLUS_4                           20                             22
  CLUS_5                            8                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 34(17Q25.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(17Q25.3) MUTATED       32      3      5     27
  DEL PEAK 34(17Q25.3) WILD-TYPE     63     57     34     36
D59V1, multiclass
        clus
vv       DEL PEAK 34(17Q25.3) MUTATED DEL PEAK 34(17Q25.3) WILD-TYPE
  CLUS_1                           32                             63
  CLUS_2                            3                             57
  CLUS_3                            5                             34
  CLUS_4                           27                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(17Q25.3) MUTATED        7      8     24     28
  DEL PEAK 34(17Q25.3) WILD-TYPE     47     48     48     47
D59V2, multiclass
        clus
vv       DEL PEAK 34(17Q25.3) MUTATED DEL PEAK 34(17Q25.3) WILD-TYPE
  CLUS_1                            7                             47
  CLUS_2                            8                             48
  CLUS_3                           24                             48
  CLUS_4                           28                             47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(17Q25.3) MUTATED       15     14     20     11
  DEL PEAK 34(17Q25.3) WILD-TYPE     43     31     41     45
D59V3, multiclass
        clus
vv       DEL PEAK 34(17Q25.3) MUTATED DEL PEAK 34(17Q25.3) WILD-TYPE
  CLUS_1                           15                             43
  CLUS_2                           14                             31
  CLUS_3                           20                             41
  CLUS_4                           11                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(17Q25.3) MUTATED        5      9     18     20      6      2
  DEL PEAK 34(17Q25.3) WILD-TYPE     19     26     31     48     16     20
D59V4, multiclass
        clus
vv       DEL PEAK 34(17Q25.3) MUTATED DEL PEAK 34(17Q25.3) WILD-TYPE
  CLUS_1                            5                             19
  CLUS_2                            9                             26
  CLUS_3                           18                             31
  CLUS_4                           20                             48
  CLUS_5                            6                             16
  CLUS_6                            2                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(17Q25.3) MUTATED       30     25     12
  DEL PEAK 34(17Q25.3) WILD-TYPE     84     52     52
D59V5, multiclass
        clus
vv       DEL PEAK 34(17Q25.3) MUTATED DEL PEAK 34(17Q25.3) WILD-TYPE
  CLUS_1                           30                             84
  CLUS_2                           25                             52
  CLUS_3                           12                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(17Q25.3) MUTATED       15      4     16      6     10      8
  DEL PEAK 34(17Q25.3) WILD-TYPE     32     17     33     40     20     21
                                vv
clus                             CLUS_7
  DEL PEAK 34(17Q25.3) MUTATED        8
  DEL PEAK 34(17Q25.3) WILD-TYPE     25
D59V6, multiclass
        clus
vv       DEL PEAK 34(17Q25.3) MUTATED DEL PEAK 34(17Q25.3) WILD-TYPE
  CLUS_1                           15                             32
  CLUS_2                            4                             17
  CLUS_3                           16                             33
  CLUS_4                            6                             40
  CLUS_5                           10                             20
  CLUS_6                            8                             21
  CLUS_7                            8                             25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(17Q25.3) MUTATED       24     13     29
  DEL PEAK 34(17Q25.3) WILD-TYPE     81     37     71
D59V7, multiclass
        clus
vv       DEL PEAK 34(17Q25.3) MUTATED DEL PEAK 34(17Q25.3) WILD-TYPE
  CLUS_1                           24                             81
  CLUS_2                           13                             37
  CLUS_3                           29                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(17Q25.3) MUTATED       23      5     37      1
  DEL PEAK 34(17Q25.3) WILD-TYPE     59     32     77     21
D59V8, multiclass
        clus
vv       DEL PEAK 34(17Q25.3) MUTATED DEL PEAK 34(17Q25.3) WILD-TYPE
  CLUS_1                           23                             59
  CLUS_2                            5                             32
  CLUS_3                           37                             77
  CLUS_4                            1                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(17Q25.3) MUTATED        9     11     14     10     10
  DEL PEAK 34(17Q25.3) WILD-TYPE     49     16     33     13     29
D59V9, multiclass
        clus
vv       DEL PEAK 34(17Q25.3) MUTATED DEL PEAK 34(17Q25.3) WILD-TYPE
  CLUS_1                            9                             49
  CLUS_2                           11                             16
  CLUS_3                           14                             33
  CLUS_4                           10                             13
  CLUS_5                           10                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(17Q25.3) MUTATED       16     18      5     12      3
  DEL PEAK 34(17Q25.3) WILD-TYPE     42     31     16     30     21
D59V10, multiclass
        clus
vv       DEL PEAK 34(17Q25.3) MUTATED DEL PEAK 34(17Q25.3) WILD-TYPE
  CLUS_1                           16                             42
  CLUS_2                           18                             31
  CLUS_3                            5                             16
  CLUS_4                           12                             30
  CLUS_5                            3                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 35(18P11.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(18P11.32) MUTATED       33      5     11     19
  DEL PEAK 35(18P11.32) WILD-TYPE     62     55     28     44
D60V1, multiclass
        clus
vv       DEL PEAK 35(18P11.32) MUTATED DEL PEAK 35(18P11.32) WILD-TYPE
  CLUS_1                            33                              62
  CLUS_2                             5                              55
  CLUS_3                            11                              28
  CLUS_4                            19                              44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(18P11.32) MUTATED        9     11     23     25
  DEL PEAK 35(18P11.32) WILD-TYPE     45     45     49     50
D60V2, multiclass
        clus
vv       DEL PEAK 35(18P11.32) MUTATED DEL PEAK 35(18P11.32) WILD-TYPE
  CLUS_1                             9                              45
  CLUS_2                            11                              45
  CLUS_3                            23                              49
  CLUS_4                            25                              50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(18P11.32) MUTATED       12     13     19     16
  DEL PEAK 35(18P11.32) WILD-TYPE     46     32     42     40
D60V3, multiclass
        clus
vv       DEL PEAK 35(18P11.32) MUTATED DEL PEAK 35(18P11.32) WILD-TYPE
  CLUS_1                            12                              46
  CLUS_2                            13                              32
  CLUS_3                            19                              42
  CLUS_4                            16                              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(18P11.32) MUTATED        6      5     19     17      5      8
  DEL PEAK 35(18P11.32) WILD-TYPE     18     30     30     51     17     14
D60V4, multiclass
        clus
vv       DEL PEAK 35(18P11.32) MUTATED DEL PEAK 35(18P11.32) WILD-TYPE
  CLUS_1                             6                              18
  CLUS_2                             5                              30
  CLUS_3                            19                              30
  CLUS_4                            17                              51
  CLUS_5                             5                              17
  CLUS_6                             8                              14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(18P11.32) MUTATED       30     23     15
  DEL PEAK 35(18P11.32) WILD-TYPE     84     54     49
D60V5, multiclass
        clus
vv       DEL PEAK 35(18P11.32) MUTATED DEL PEAK 35(18P11.32) WILD-TYPE
  CLUS_1                            30                              84
  CLUS_2                            23                              54
  CLUS_3                            15                              49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(18P11.32) MUTATED       15      3     16      9      5      7
  DEL PEAK 35(18P11.32) WILD-TYPE     32     18     33     37     25     22
                                 vv
clus                              CLUS_7
  DEL PEAK 35(18P11.32) MUTATED       13
  DEL PEAK 35(18P11.32) WILD-TYPE     20
D60V6, multiclass
        clus
vv       DEL PEAK 35(18P11.32) MUTATED DEL PEAK 35(18P11.32) WILD-TYPE
  CLUS_1                            15                              32
  CLUS_2                             3                              18
  CLUS_3                            16                              33
  CLUS_4                             9                              37
  CLUS_5                             5                              25
  CLUS_6                             7                              22
  CLUS_7                            13                              20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(18P11.32) MUTATED       26     12     29
  DEL PEAK 35(18P11.32) WILD-TYPE     79     38     71
D60V7, multiclass
        clus
vv       DEL PEAK 35(18P11.32) MUTATED DEL PEAK 35(18P11.32) WILD-TYPE
  CLUS_1                            26                              79
  CLUS_2                            12                              38
  CLUS_3                            29                              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(18P11.32) MUTATED       25      2     37      3
  DEL PEAK 35(18P11.32) WILD-TYPE     57     35     77     19
D60V8, multiclass
        clus
vv       DEL PEAK 35(18P11.32) MUTATED DEL PEAK 35(18P11.32) WILD-TYPE
  CLUS_1                            25                              57
  CLUS_2                             2                              35
  CLUS_3                            37                              77
  CLUS_4                             3                              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(18P11.32) MUTATED       14      8     13     10     10
  DEL PEAK 35(18P11.32) WILD-TYPE     44     19     34     13     29
D60V9, multiclass
        clus
vv       DEL PEAK 35(18P11.32) MUTATED DEL PEAK 35(18P11.32) WILD-TYPE
  CLUS_1                            14                              44
  CLUS_2                             8                              19
  CLUS_3                            13                              34
  CLUS_4                            10                              13
  CLUS_5                            10                              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(18P11.32) MUTATED       18     15      9      7      6
  DEL PEAK 35(18P11.32) WILD-TYPE     40     34     12     35     18
D60V10, multiclass
        clus
vv       DEL PEAK 35(18P11.32) MUTATED DEL PEAK 35(18P11.32) WILD-TYPE
  CLUS_1                            18                              40
  CLUS_2                            15                              34
  CLUS_3                             9                              12
  CLUS_4                             7                              35
  CLUS_5                             6                              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 36(18Q23) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(18Q23) MUTATED       41      5     12     28
  DEL PEAK 36(18Q23) WILD-TYPE     54     55     27     35
D61V1, multiclass
        clus
vv       DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE
  CLUS_1                         41                           54
  CLUS_2                          5                           55
  CLUS_3                         12                           27
  CLUS_4                         28                           35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(18Q23) MUTATED       14      8     16     48
  DEL PEAK 36(18Q23) WILD-TYPE     40     48     56     27
D61V2, multiclass
        clus
vv       DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE
  CLUS_1                         14                           40
  CLUS_2                          8                           48
  CLUS_3                         16                           56
  CLUS_4                         48                           27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(18Q23) MUTATED       13     21     15     27
  DEL PEAK 36(18Q23) WILD-TYPE     45     24     46     29
D61V3, multiclass
        clus
vv       DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE
  CLUS_1                         13                           45
  CLUS_2                         21                           24
  CLUS_3                         15                           46
  CLUS_4                         27                           29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(18Q23) MUTATED        7     10     30     13      8      8
  DEL PEAK 36(18Q23) WILD-TYPE     17     25     19     55     14     14
D61V4, multiclass
        clus
vv       DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE
  CLUS_1                          7                           17
  CLUS_2                         10                           25
  CLUS_3                         30                           19
  CLUS_4                         13                           55
  CLUS_5                          8                           14
  CLUS_6                          8                           14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(18Q23) MUTATED       49     18     18
  DEL PEAK 36(18Q23) WILD-TYPE     65     59     46
D61V5, multiclass
        clus
vv       DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE
  CLUS_1                         49                           65
  CLUS_2                         18                           59
  CLUS_3                         18                           46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 36(18Q23) MUTATED       16      6     12     11     17      5     18
  DEL PEAK 36(18Q23) WILD-TYPE     31     15     37     35     13     24     15
D61V6, multiclass
        clus
vv       DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE
  CLUS_1                         16                           31
  CLUS_2                          6                           15
  CLUS_3                         12                           37
  CLUS_4                         11                           35
  CLUS_5                         17                           13
  CLUS_6                          5                           24
  CLUS_7                         18                           15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(18Q23) MUTATED       35     27     23
  DEL PEAK 36(18Q23) WILD-TYPE     70     23     77
D61V7, multiclass
        clus
vv       DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE
  CLUS_1                         35                           70
  CLUS_2                         27                           23
  CLUS_3                         23                           77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(18Q23) MUTATED       34     13     34      4
  DEL PEAK 36(18Q23) WILD-TYPE     48     24     80     18
D61V8, multiclass
        clus
vv       DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE
  CLUS_1                         34                           48
  CLUS_2                         13                           24
  CLUS_3                         34                           80
  CLUS_4                          4                           18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(18Q23) MUTATED       18      8     10     11     23
  DEL PEAK 36(18Q23) WILD-TYPE     40     19     37     12     16
D61V9, multiclass
        clus
vv       DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE
  CLUS_1                         18                           40
  CLUS_2                          8                           19
  CLUS_3                         10                           37
  CLUS_4                         11                           12
  CLUS_5                         23                           16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(18Q23) MUTATED       20     11     11     23      5
  DEL PEAK 36(18Q23) WILD-TYPE     38     38     10     19     19
D61V10, multiclass
        clus
vv       DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE
  CLUS_1                         20                           38
  CLUS_2                         11                           38
  CLUS_3                         11                           10
  CLUS_4                         23                           19
  CLUS_5                          5                           19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 37(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(19P13.3) MUTATED       25      2     17     26
  DEL PEAK 37(19P13.3) WILD-TYPE     70     58     22     37
D62V1, multiclass
        clus
vv       DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE
  CLUS_1                           25                             70
  CLUS_2                            2                             58
  CLUS_3                           17                             22
  CLUS_4                           26                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(19P13.3) MUTATED        6     10     29     25
  DEL PEAK 37(19P13.3) WILD-TYPE     48     46     43     50
D62V2, multiclass
        clus
vv       DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE
  CLUS_1                            6                             48
  CLUS_2                           10                             46
  CLUS_3                           29                             43
  CLUS_4                           25                             50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(19P13.3) MUTATED       11     18     22      9
  DEL PEAK 37(19P13.3) WILD-TYPE     47     27     39     47
D62V3, multiclass
        clus
vv       DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE
  CLUS_1                           11                             47
  CLUS_2                           18                             27
  CLUS_3                           22                             39
  CLUS_4                            9                             47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(19P13.3) MUTATED        7      4     18     23      0      8
  DEL PEAK 37(19P13.3) WILD-TYPE     17     31     31     45     22     14
D62V4, multiclass
        clus
vv       DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE
  CLUS_1                            7                             17
  CLUS_2                            4                             31
  CLUS_3                           18                             31
  CLUS_4                           23                             45
  CLUS_5                            0                             22
  CLUS_6                            8                             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(19P13.3) MUTATED       23     31     16
  DEL PEAK 37(19P13.3) WILD-TYPE     91     46     48
D62V5, multiclass
        clus
vv       DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE
  CLUS_1                           23                             91
  CLUS_2                           31                             46
  CLUS_3                           16                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(19P13.3) MUTATED        8      1     20      9      8     11
  DEL PEAK 37(19P13.3) WILD-TYPE     39     20     29     37     22     18
                                vv
clus                             CLUS_7
  DEL PEAK 37(19P13.3) MUTATED       13
  DEL PEAK 37(19P13.3) WILD-TYPE     20
D62V6, multiclass
        clus
vv       DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE
  CLUS_1                            8                             39
  CLUS_2                            1                             20
  CLUS_3                           20                             29
  CLUS_4                            9                             37
  CLUS_5                            8                             22
  CLUS_6                           11                             18
  CLUS_7                           13                             20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(19P13.3) MUTATED       21     11     36
  DEL PEAK 37(19P13.3) WILD-TYPE     84     39     64
D62V7, multiclass
        clus
vv       DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE
  CLUS_1                           21                             84
  CLUS_2                           11                             39
  CLUS_3                           36                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(19P13.3) MUTATED       19      4     42      3
  DEL PEAK 37(19P13.3) WILD-TYPE     63     33     72     19
D62V8, multiclass
        clus
vv       DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE
  CLUS_1                           19                             63
  CLUS_2                            4                             33
  CLUS_3                           42                             72
  CLUS_4                            3                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(19P13.3) MUTATED        8      6     20     10     11
  DEL PEAK 37(19P13.3) WILD-TYPE     50     21     27     13     28
D62V9, multiclass
        clus
vv       DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE
  CLUS_1                            8                             50
  CLUS_2                            6                             21
  CLUS_3                           20                             27
  CLUS_4                           10                             13
  CLUS_5                           11                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(19P13.3) MUTATED       14     22      9      6      4
  DEL PEAK 37(19P13.3) WILD-TYPE     44     27     12     36     20
D62V10, multiclass
        clus
vv       DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE
  CLUS_1                           14                             44
  CLUS_2                           22                             27
  CLUS_3                            9                             12
  CLUS_4                            6                             36
  CLUS_5                            4                             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 38(19Q13.43) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(19Q13.43) MUTATED       47      4     25     30
  DEL PEAK 38(19Q13.43) WILD-TYPE     48     56     14     33
D63V1, multiclass
        clus
vv       DEL PEAK 38(19Q13.43) MUTATED DEL PEAK 38(19Q13.43) WILD-TYPE
  CLUS_1                            47                              48
  CLUS_2                             4                              56
  CLUS_3                            25                              14
  CLUS_4                            30                              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(19Q13.43) MUTATED       12     20     36     38
  DEL PEAK 38(19Q13.43) WILD-TYPE     42     36     36     37
D63V2, multiclass
        clus
vv       DEL PEAK 38(19Q13.43) MUTATED DEL PEAK 38(19Q13.43) WILD-TYPE
  CLUS_1                            12                              42
  CLUS_2                            20                              36
  CLUS_3                            36                              36
  CLUS_4                            38                              37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(19Q13.43) MUTATED       20     21     31     19
  DEL PEAK 38(19Q13.43) WILD-TYPE     38     24     30     37
D63V3, multiclass
        clus
vv       DEL PEAK 38(19Q13.43) MUTATED DEL PEAK 38(19Q13.43) WILD-TYPE
  CLUS_1                            20                              38
  CLUS_2                            21                              24
  CLUS_3                            31                              30
  CLUS_4                            19                              37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(19Q13.43) MUTATED       11     12     24     30      8      6
  DEL PEAK 38(19Q13.43) WILD-TYPE     13     23     25     38     14     16
D63V4, multiclass
        clus
vv       DEL PEAK 38(19Q13.43) MUTATED DEL PEAK 38(19Q13.43) WILD-TYPE
  CLUS_1                            11                              13
  CLUS_2                            12                              23
  CLUS_3                            24                              25
  CLUS_4                            30                              38
  CLUS_5                             8                              14
  CLUS_6                             6                              16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(19Q13.43) MUTATED       44     38     22
  DEL PEAK 38(19Q13.43) WILD-TYPE     70     39     42
D63V5, multiclass
        clus
vv       DEL PEAK 38(19Q13.43) MUTATED DEL PEAK 38(19Q13.43) WILD-TYPE
  CLUS_1                            44                              70
  CLUS_2                            38                              39
  CLUS_3                            22                              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(19Q13.43) MUTATED       20      7     27     18     10     11
  DEL PEAK 38(19Q13.43) WILD-TYPE     27     14     22     28     20     18
                                 vv
clus                              CLUS_7
  DEL PEAK 38(19Q13.43) MUTATED       11
  DEL PEAK 38(19Q13.43) WILD-TYPE     22
D63V6, multiclass
        clus
vv       DEL PEAK 38(19Q13.43) MUTATED DEL PEAK 38(19Q13.43) WILD-TYPE
  CLUS_1                            20                              27
  CLUS_2                             7                              14
  CLUS_3                            27                              22
  CLUS_4                            18                              28
  CLUS_5                            10                              20
  CLUS_6                            11                              18
  CLUS_7                            11                              22
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(19Q13.43) MUTATED       40     20     45
  DEL PEAK 38(19Q13.43) WILD-TYPE     65     30     55
D63V7, multiclass
        clus
vv       DEL PEAK 38(19Q13.43) MUTATED DEL PEAK 38(19Q13.43) WILD-TYPE
  CLUS_1                            40                              65
  CLUS_2                            20                              30
  CLUS_3                            45                              55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(19Q13.43) MUTATED       37     14     51      3
  DEL PEAK 38(19Q13.43) WILD-TYPE     45     23     63     19
D63V8, multiclass
        clus
vv       DEL PEAK 38(19Q13.43) MUTATED DEL PEAK 38(19Q13.43) WILD-TYPE
  CLUS_1                            37                              45
  CLUS_2                            14                              23
  CLUS_3                            51                              63
  CLUS_4                             3                              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(19Q13.43) MUTATED       24     11     23      9     16
  DEL PEAK 38(19Q13.43) WILD-TYPE     34     16     24     14     23
D63V9, multiclass
        clus
vv       DEL PEAK 38(19Q13.43) MUTATED DEL PEAK 38(19Q13.43) WILD-TYPE
  CLUS_1                            24                              34
  CLUS_2                            11                              16
  CLUS_3                            23                              24
  CLUS_4                             9                              14
  CLUS_5                            16                              23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(19Q13.43) MUTATED       26     24      6     22      5
  DEL PEAK 38(19Q13.43) WILD-TYPE     32     25     15     20     19
D63V10, multiclass
        clus
vv       DEL PEAK 38(19Q13.43) MUTATED DEL PEAK 38(19Q13.43) WILD-TYPE
  CLUS_1                            26                              32
  CLUS_2                            24                              25
  CLUS_3                             6                              15
  CLUS_4                            22                              20
  CLUS_5                             5                              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = DEL PEAK 39(21Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(21Q11.2) MUTATED       24      4     11     12
  DEL PEAK 39(21Q11.2) WILD-TYPE     71     56     28     51
D64V1, multiclass
        clus
vv       DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  CLUS_1                           24                             71
  CLUS_2                            4                             56
  CLUS_3                           11                             28
  CLUS_4                           12                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(21Q11.2) MUTATED       12      8     10     21
  DEL PEAK 39(21Q11.2) WILD-TYPE     42     48     62     54
D64V2, multiclass
        clus
vv       DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  CLUS_1                           12                             42
  CLUS_2                            8                             48
  CLUS_3                           10                             62
  CLUS_4                           21                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(21Q11.2) MUTATED       10     11      8     16
  DEL PEAK 39(21Q11.2) WILD-TYPE     48     34     53     40
D64V3, multiclass
        clus
vv       DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  CLUS_1                           10                             48
  CLUS_2                           11                             34
  CLUS_3                            8                             53
  CLUS_4                           16                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(21Q11.2) MUTATED        4      7     18      7      3      6
  DEL PEAK 39(21Q11.2) WILD-TYPE     20     28     31     61     19     16
D64V4, multiclass
        clus
vv       DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  CLUS_1                            4                             20
  CLUS_2                            7                             28
  CLUS_3                           18                             31
  CLUS_4                            7                             61
  CLUS_5                            3                             19
  CLUS_6                            6                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(21Q11.2) MUTATED       26     10     14
  DEL PEAK 39(21Q11.2) WILD-TYPE     88     67     50
D64V5, multiclass
        clus
vv       DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  CLUS_1                           26                             88
  CLUS_2                           10                             67
  CLUS_3                           14                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(21Q11.2) MUTATED       10      3      6     10      7      3
  DEL PEAK 39(21Q11.2) WILD-TYPE     37     18     43     36     23     26
                                vv
clus                             CLUS_7
  DEL PEAK 39(21Q11.2) MUTATED       11
  DEL PEAK 39(21Q11.2) WILD-TYPE     22
D64V6, multiclass
        clus
vv       DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  CLUS_1                           10                             37
  CLUS_2                            3                             18
  CLUS_3                            6                             43
  CLUS_4                           10                             36
  CLUS_5                            7                             23
  CLUS_6                            3                             26
  CLUS_7                           11                             22
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(21Q11.2) MUTATED       18     20     13
  DEL PEAK 39(21Q11.2) WILD-TYPE     87     30     87
D64V7, multiclass
        clus
vv       DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  CLUS_1                           18                             87
  CLUS_2                           20                             30
  CLUS_3                           13                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(21Q11.2) MUTATED       17      6     24      4
  DEL PEAK 39(21Q11.2) WILD-TYPE     65     31     90     18
D64V8, multiclass
        clus
vv       DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  CLUS_1                           17                             65
  CLUS_2                            6                             31
  CLUS_3                           24                             90
  CLUS_4                            4                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(21Q11.2) MUTATED        9      7      5     10     13
  DEL PEAK 39(21Q11.2) WILD-TYPE     49     20     42     13     26
D64V9, multiclass
        clus
vv       DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  CLUS_1                            9                             49
  CLUS_2                            7                             20
  CLUS_3                            5                             42
  CLUS_4                           10                             13
  CLUS_5                           13                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(21Q11.2) MUTATED       11      7      7     13      6
  DEL PEAK 39(21Q11.2) WILD-TYPE     47     42     14     29     18
D64V10, multiclass
        clus
vv       DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  CLUS_1                           11                             47
  CLUS_2                            7                             42
  CLUS_3                            7                             14
  CLUS_4                           13                             29
  CLUS_5                            6                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = DEL PEAK 40(21Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(21Q22.3) MUTATED       35      5      8     18
  DEL PEAK 40(21Q22.3) WILD-TYPE     60     55     31     45
D65V1, multiclass
        clus
vv       DEL PEAK 40(21Q22.3) MUTATED DEL PEAK 40(21Q22.3) WILD-TYPE
  CLUS_1                           35                             60
  CLUS_2                            5                             55
  CLUS_3                            8                             31
  CLUS_4                           18                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(21Q22.3) MUTATED       12     10     14     30
  DEL PEAK 40(21Q22.3) WILD-TYPE     42     46     58     45
D65V2, multiclass
        clus
vv       DEL PEAK 40(21Q22.3) MUTATED DEL PEAK 40(21Q22.3) WILD-TYPE
  CLUS_1                           12                             42
  CLUS_2                           10                             46
  CLUS_3                           14                             58
  CLUS_4                           30                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(21Q22.3) MUTATED       15     16     12     17
  DEL PEAK 40(21Q22.3) WILD-TYPE     43     29     49     39
D65V3, multiclass
        clus
vv       DEL PEAK 40(21Q22.3) MUTATED DEL PEAK 40(21Q22.3) WILD-TYPE
  CLUS_1                           15                             43
  CLUS_2                           16                             29
  CLUS_3                           12                             49
  CLUS_4                           17                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(21Q22.3) MUTATED        6     12     21     10      7      4
  DEL PEAK 40(21Q22.3) WILD-TYPE     18     23     28     58     15     18
D65V4, multiclass
        clus
vv       DEL PEAK 40(21Q22.3) MUTATED DEL PEAK 40(21Q22.3) WILD-TYPE
  CLUS_1                            6                             18
  CLUS_2                           12                             23
  CLUS_3                           21                             28
  CLUS_4                           10                             58
  CLUS_5                            7                             15
  CLUS_6                            4                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(21Q22.3) MUTATED       36     14     16
  DEL PEAK 40(21Q22.3) WILD-TYPE     78     63     48
D65V5, multiclass
        clus
vv       DEL PEAK 40(21Q22.3) MUTATED DEL PEAK 40(21Q22.3) WILD-TYPE
  CLUS_1                           36                             78
  CLUS_2                           14                             63
  CLUS_3                           16                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(21Q22.3) MUTATED       17      3     11     13      8      3
  DEL PEAK 40(21Q22.3) WILD-TYPE     30     18     38     33     22     26
                                vv
clus                             CLUS_7
  DEL PEAK 40(21Q22.3) MUTATED       11
  DEL PEAK 40(21Q22.3) WILD-TYPE     22
D65V6, multiclass
        clus
vv       DEL PEAK 40(21Q22.3) MUTATED DEL PEAK 40(21Q22.3) WILD-TYPE
  CLUS_1                           17                             30
  CLUS_2                            3                             18
  CLUS_3                           11                             38
  CLUS_4                           13                             33
  CLUS_5                            8                             22
  CLUS_6                            3                             26
  CLUS_7                           11                             22
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(21Q22.3) MUTATED       27     18     21
  DEL PEAK 40(21Q22.3) WILD-TYPE     78     32     79
D65V7, multiclass
        clus
vv       DEL PEAK 40(21Q22.3) MUTATED DEL PEAK 40(21Q22.3) WILD-TYPE
  CLUS_1                           27                             78
  CLUS_2                           18                             32
  CLUS_3                           21                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(21Q22.3) MUTATED       28      5     30      3
  DEL PEAK 40(21Q22.3) WILD-TYPE     54     32     84     19
D65V8, multiclass
        clus
vv       DEL PEAK 40(21Q22.3) MUTATED DEL PEAK 40(21Q22.3) WILD-TYPE
  CLUS_1                           28                             54
  CLUS_2                            5                             32
  CLUS_3                           30                             84
  CLUS_4                            3                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(21Q22.3) MUTATED       14     14      9      6     15
  DEL PEAK 40(21Q22.3) WILD-TYPE     44     13     38     17     24
D65V9, multiclass
        clus
vv       DEL PEAK 40(21Q22.3) MUTATED DEL PEAK 40(21Q22.3) WILD-TYPE
  CLUS_1                           14                             44
  CLUS_2                           14                             13
  CLUS_3                            9                             38
  CLUS_4                            6                             17
  CLUS_5                           15                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(21Q22.3) MUTATED       19     11     10     14      4
  DEL PEAK 40(21Q22.3) WILD-TYPE     39     38     11     28     20
D65V10, multiclass
        clus
vv       DEL PEAK 40(21Q22.3) MUTATED DEL PEAK 40(21Q22.3) WILD-TYPE
  CLUS_1                           19                             39
  CLUS_2                           11                             38
  CLUS_3                           10                             11
  CLUS_4                           14                             28
  CLUS_5                            4                             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = DEL PEAK 41(22Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(22Q13.32) MUTATED       31      8      7     37
  DEL PEAK 41(22Q13.32) WILD-TYPE     64     52     32     26
D66V1, multiclass
        clus
vv       DEL PEAK 41(22Q13.32) MUTATED DEL PEAK 41(22Q13.32) WILD-TYPE
  CLUS_1                            31                              64
  CLUS_2                             8                              52
  CLUS_3                             7                              32
  CLUS_4                            37                              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(22Q13.32) MUTATED       12     20     21     30
  DEL PEAK 41(22Q13.32) WILD-TYPE     42     36     51     45
D66V2, multiclass
        clus
vv       DEL PEAK 41(22Q13.32) MUTATED DEL PEAK 41(22Q13.32) WILD-TYPE
  CLUS_1                            12                              42
  CLUS_2                            20                              36
  CLUS_3                            21                              51
  CLUS_4                            30                              45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(22Q13.32) MUTATED       22     16     18     18
  DEL PEAK 41(22Q13.32) WILD-TYPE     36     29     43     38
D66V3, multiclass
        clus
vv       DEL PEAK 41(22Q13.32) MUTATED DEL PEAK 41(22Q13.32) WILD-TYPE
  CLUS_1                            22                              36
  CLUS_2                            16                              29
  CLUS_3                            18                              43
  CLUS_4                            18                              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(22Q13.32) MUTATED       13      8     18     21      7      7
  DEL PEAK 41(22Q13.32) WILD-TYPE     11     27     31     47     15     15
D66V4, multiclass
        clus
vv       DEL PEAK 41(22Q13.32) MUTATED DEL PEAK 41(22Q13.32) WILD-TYPE
  CLUS_1                            13                              11
  CLUS_2                             8                              27
  CLUS_3                            18                              31
  CLUS_4                            21                              47
  CLUS_5                             7                              15
  CLUS_6                             7                              15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(22Q13.32) MUTATED       34     25     23
  DEL PEAK 41(22Q13.32) WILD-TYPE     80     52     41
D66V5, multiclass
        clus
vv       DEL PEAK 41(22Q13.32) MUTATED DEL PEAK 41(22Q13.32) WILD-TYPE
  CLUS_1                            34                              80
  CLUS_2                            25                              52
  CLUS_3                            23                              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(22Q13.32) MUTATED       20      4     10     16      7     15
  DEL PEAK 41(22Q13.32) WILD-TYPE     27     17     39     30     23     14
                                 vv
clus                              CLUS_7
  DEL PEAK 41(22Q13.32) MUTATED       10
  DEL PEAK 41(22Q13.32) WILD-TYPE     23
D66V6, multiclass
        clus
vv       DEL PEAK 41(22Q13.32) MUTATED DEL PEAK 41(22Q13.32) WILD-TYPE
  CLUS_1                            20                              27
  CLUS_2                             4                              17
  CLUS_3                            10                              39
  CLUS_4                            16                              30
  CLUS_5                             7                              23
  CLUS_6                            15                              14
  CLUS_7                            10                              23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(22Q13.32) MUTATED       36     21     25
  DEL PEAK 41(22Q13.32) WILD-TYPE     69     29     75
D66V7, multiclass
        clus
vv       DEL PEAK 41(22Q13.32) MUTATED DEL PEAK 41(22Q13.32) WILD-TYPE
  CLUS_1                            36                              69
  CLUS_2                            21                              29
  CLUS_3                            25                              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(22Q13.32) MUTATED       29     15     32      6
  DEL PEAK 41(22Q13.32) WILD-TYPE     53     22     82     16
D66V8, multiclass
        clus
vv       DEL PEAK 41(22Q13.32) MUTATED DEL PEAK 41(22Q13.32) WILD-TYPE
  CLUS_1                            29                              53
  CLUS_2                            15                              22
  CLUS_3                            32                              82
  CLUS_4                             6                              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(22Q13.32) MUTATED       19     13     17     11     13
  DEL PEAK 41(22Q13.32) WILD-TYPE     39     14     30     12     26
D66V9, multiclass
        clus
vv       DEL PEAK 41(22Q13.32) MUTATED DEL PEAK 41(22Q13.32) WILD-TYPE
  CLUS_1                            19                              39
  CLUS_2                            13                              14
  CLUS_3                            17                              30
  CLUS_4                            11                              12
  CLUS_5                            13                              26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(22Q13.32) MUTATED       24     18      5     17      9
  DEL PEAK 41(22Q13.32) WILD-TYPE     34     31     16     25     15
D66V10, multiclass
        clus
vv       DEL PEAK 41(22Q13.32) MUTATED DEL PEAK 41(22Q13.32) WILD-TYPE
  CLUS_1                            24                              34
  CLUS_2                            18                              31
  CLUS_3                             5                              16
  CLUS_4                            17                              25
  CLUS_5                             9                              15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = DEL PEAK 42(XP21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(XP21.1) MUTATED       15      6     14     20
  DEL PEAK 42(XP21.1) WILD-TYPE     80     54     25     43
D67V1, multiclass
        clus
vv       DEL PEAK 42(XP21.1) MUTATED DEL PEAK 42(XP21.1) WILD-TYPE
  CLUS_1                          15                            80
  CLUS_2                           6                            54
  CLUS_3                          14                            25
  CLUS_4                          20                            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(XP21.1) MUTATED        4     11     25     15
  DEL PEAK 42(XP21.1) WILD-TYPE     50     45     47     60
D67V2, multiclass
        clus
vv       DEL PEAK 42(XP21.1) MUTATED DEL PEAK 42(XP21.1) WILD-TYPE
  CLUS_1                           4                            50
  CLUS_2                          11                            45
  CLUS_3                          25                            47
  CLUS_4                          15                            60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(XP21.1) MUTATED        7     11     20      9
  DEL PEAK 42(XP21.1) WILD-TYPE     51     34     41     47
D67V3, multiclass
        clus
vv       DEL PEAK 42(XP21.1) MUTATED DEL PEAK 42(XP21.1) WILD-TYPE
  CLUS_1                           7                            51
  CLUS_2                          11                            34
  CLUS_3                          20                            41
  CLUS_4                           9                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(XP21.1) MUTATED        3      5     10     22      2      5
  DEL PEAK 42(XP21.1) WILD-TYPE     21     30     39     46     20     17
D67V4, multiclass
        clus
vv       DEL PEAK 42(XP21.1) MUTATED DEL PEAK 42(XP21.1) WILD-TYPE
  CLUS_1                           3                            21
  CLUS_2                           5                            30
  CLUS_3                          10                            39
  CLUS_4                          22                            46
  CLUS_5                           2                            20
  CLUS_6                           5                            17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(XP21.1) MUTATED       18     26     10
  DEL PEAK 42(XP21.1) WILD-TYPE     96     51     54
D67V5, multiclass
        clus
vv       DEL PEAK 42(XP21.1) MUTATED DEL PEAK 42(XP21.1) WILD-TYPE
  CLUS_1                          18                            96
  CLUS_2                          26                            51
  CLUS_3                          10                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(XP21.1) MUTATED        7      1     15      7      8     11
  DEL PEAK 42(XP21.1) WILD-TYPE     40     20     34     39     22     18
                               vv
clus                            CLUS_7
  DEL PEAK 42(XP21.1) MUTATED        5
  DEL PEAK 42(XP21.1) WILD-TYPE     28
D67V6, multiclass
        clus
vv       DEL PEAK 42(XP21.1) MUTATED DEL PEAK 42(XP21.1) WILD-TYPE
  CLUS_1                           7                            40
  CLUS_2                           1                            20
  CLUS_3                          15                            34
  CLUS_4                           7                            39
  CLUS_5                           8                            22
  CLUS_6                          11                            18
  CLUS_7                           5                            28
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(XP21.1) MUTATED       15     10     30
  DEL PEAK 42(XP21.1) WILD-TYPE     90     40     70
D67V7, multiclass
        clus
vv       DEL PEAK 42(XP21.1) MUTATED DEL PEAK 42(XP21.1) WILD-TYPE
  CLUS_1                          15                            90
  CLUS_2                          10                            40
  CLUS_3                          30                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(XP21.1) MUTATED       11      7     31      6
  DEL PEAK 42(XP21.1) WILD-TYPE     71     30     83     16
D67V8, multiclass
        clus
vv       DEL PEAK 42(XP21.1) MUTATED DEL PEAK 42(XP21.1) WILD-TYPE
  CLUS_1                          11                            71
  CLUS_2                           7                            30
  CLUS_3                          31                            83
  CLUS_4                           6                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(XP21.1) MUTATED       10      3     13      6      8
  DEL PEAK 42(XP21.1) WILD-TYPE     48     24     34     17     31
D67V9, multiclass
        clus
vv       DEL PEAK 42(XP21.1) MUTATED DEL PEAK 42(XP21.1) WILD-TYPE
  CLUS_1                          10                            48
  CLUS_2                           3                            24
  CLUS_3                          13                            34
  CLUS_4                           6                            17
  CLUS_5                           8                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(XP21.1) MUTATED        6     15      3      9      7
  DEL PEAK 42(XP21.1) WILD-TYPE     52     34     18     33     17
D67V10, multiclass
        clus
vv       DEL PEAK 42(XP21.1) MUTATED DEL PEAK 42(XP21.1) WILD-TYPE
  CLUS_1                           6                            52
  CLUS_2                          15                            34
  CLUS_3                           3                            18
  CLUS_4                           9                            33
  CLUS_5                           7                            17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = DEL PEAK 43(XQ21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(XQ21.1) MUTATED       45      7     24     38
  DEL PEAK 43(XQ21.1) WILD-TYPE     50     53     15     25
D68V1, multiclass
        clus
vv       DEL PEAK 43(XQ21.1) MUTATED DEL PEAK 43(XQ21.1) WILD-TYPE
  CLUS_1                          45                            50
  CLUS_2                           7                            53
  CLUS_3                          24                            15
  CLUS_4                          38                            25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(XQ21.1) MUTATED       15     24     48     27
  DEL PEAK 43(XQ21.1) WILD-TYPE     39     32     24     48
D68V2, multiclass
        clus
vv       DEL PEAK 43(XQ21.1) MUTATED DEL PEAK 43(XQ21.1) WILD-TYPE
  CLUS_1                          15                            39
  CLUS_2                          24                            32
  CLUS_3                          48                            24
  CLUS_4                          27                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(XQ21.1) MUTATED       17     20     41     17
  DEL PEAK 43(XQ21.1) WILD-TYPE     41     25     20     39
D68V3, multiclass
        clus
vv       DEL PEAK 43(XQ21.1) MUTATED DEL PEAK 43(XQ21.1) WILD-TYPE
  CLUS_1                          17                            41
  CLUS_2                          20                            25
  CLUS_3                          41                            20
  CLUS_4                          17                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(XQ21.1) MUTATED       10     12     19     43      4      7
  DEL PEAK 43(XQ21.1) WILD-TYPE     14     23     30     25     18     15
D68V4, multiclass
        clus
vv       DEL PEAK 43(XQ21.1) MUTATED DEL PEAK 43(XQ21.1) WILD-TYPE
  CLUS_1                          10                            14
  CLUS_2                          12                            23
  CLUS_3                          19                            30
  CLUS_4                          43                            25
  CLUS_5                           4                            18
  CLUS_6                           7                            15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(XQ21.1) MUTATED       38     51     24
  DEL PEAK 43(XQ21.1) WILD-TYPE     76     26     40
D68V5, multiclass
        clus
vv       DEL PEAK 43(XQ21.1) MUTATED DEL PEAK 43(XQ21.1) WILD-TYPE
  CLUS_1                          38                            76
  CLUS_2                          51                            26
  CLUS_3                          24                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(XQ21.1) MUTATED       19      6     36     16      9     15
  DEL PEAK 43(XQ21.1) WILD-TYPE     28     15     13     30     21     14
                               vv
clus                            CLUS_7
  DEL PEAK 43(XQ21.1) MUTATED       12
  DEL PEAK 43(XQ21.1) WILD-TYPE     21
D68V6, multiclass
        clus
vv       DEL PEAK 43(XQ21.1) MUTATED DEL PEAK 43(XQ21.1) WILD-TYPE
  CLUS_1                          19                            28
  CLUS_2                           6                            15
  CLUS_3                          36                            13
  CLUS_4                          16                            30
  CLUS_5                           9                            21
  CLUS_6                          15                            14
  CLUS_7                          12                            21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(XQ21.1) MUTATED       33     21     59
  DEL PEAK 43(XQ21.1) WILD-TYPE     72     29     41
D68V7, multiclass
        clus
vv       DEL PEAK 43(XQ21.1) MUTATED DEL PEAK 43(XQ21.1) WILD-TYPE
  CLUS_1                          33                            72
  CLUS_2                          21                            29
  CLUS_3                          59                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(XQ21.1) MUTATED       28     12     67      6
  DEL PEAK 43(XQ21.1) WILD-TYPE     54     25     47     16
D68V8, multiclass
        clus
vv       DEL PEAK 43(XQ21.1) MUTATED DEL PEAK 43(XQ21.1) WILD-TYPE
  CLUS_1                          28                            54
  CLUS_2                          12                            25
  CLUS_3                          67                            47
  CLUS_4                           6                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(XQ21.1) MUTATED       17     14     28     12     15
  DEL PEAK 43(XQ21.1) WILD-TYPE     41     13     19     11     24
D68V9, multiclass
        clus
vv       DEL PEAK 43(XQ21.1) MUTATED DEL PEAK 43(XQ21.1) WILD-TYPE
  CLUS_1                          17                            41
  CLUS_2                          14                            13
  CLUS_3                          28                            19
  CLUS_4                          12                            11
  CLUS_5                          15                            24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(XQ21.1) MUTATED       23     29     11     17      6
  DEL PEAK 43(XQ21.1) WILD-TYPE     35     20     10     25     18
D68V10, multiclass
        clus
vv       DEL PEAK 43(XQ21.1) MUTATED DEL PEAK 43(XQ21.1) WILD-TYPE
  CLUS_1                          23                            35
  CLUS_2                          29                            20
  CLUS_3                          11                            10
  CLUS_4                          17                            25
  CLUS_5                           6                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = DEL PEAK 44(XQ22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(XQ22.3) MUTATED       49      9     23     42
  DEL PEAK 44(XQ22.3) WILD-TYPE     46     51     16     21
D69V1, multiclass
        clus
vv       DEL PEAK 44(XQ22.3) MUTATED DEL PEAK 44(XQ22.3) WILD-TYPE
  CLUS_1                          49                            46
  CLUS_2                           9                            51
  CLUS_3                          23                            16
  CLUS_4                          42                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(XQ22.3) MUTATED       15     22     52     34
  DEL PEAK 44(XQ22.3) WILD-TYPE     39     34     20     41
D69V2, multiclass
        clus
vv       DEL PEAK 44(XQ22.3) MUTATED DEL PEAK 44(XQ22.3) WILD-TYPE
  CLUS_1                          15                            39
  CLUS_2                          22                            34
  CLUS_3                          52                            20
  CLUS_4                          34                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(XQ22.3) MUTATED       24     23     42     18
  DEL PEAK 44(XQ22.3) WILD-TYPE     34     22     19     38
D69V3, multiclass
        clus
vv       DEL PEAK 44(XQ22.3) MUTATED DEL PEAK 44(XQ22.3) WILD-TYPE
  CLUS_1                          24                            34
  CLUS_2                          23                            22
  CLUS_3                          42                            19
  CLUS_4                          18                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(XQ22.3) MUTATED       12     15     21     45      9      5
  DEL PEAK 44(XQ22.3) WILD-TYPE     12     20     28     23     13     17
D69V4, multiclass
        clus
vv       DEL PEAK 44(XQ22.3) MUTATED DEL PEAK 44(XQ22.3) WILD-TYPE
  CLUS_1                          12                            12
  CLUS_2                          15                            20
  CLUS_3                          21                            28
  CLUS_4                          45                            23
  CLUS_5                           9                            13
  CLUS_6                           5                            17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(XQ22.3) MUTATED       47     55     20
  DEL PEAK 44(XQ22.3) WILD-TYPE     67     22     44
D69V5, multiclass
        clus
vv       DEL PEAK 44(XQ22.3) MUTATED DEL PEAK 44(XQ22.3) WILD-TYPE
  CLUS_1                          47                            67
  CLUS_2                          55                            22
  CLUS_3                          20                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(XQ22.3) MUTATED       27      5     35     13     10     19
  DEL PEAK 44(XQ22.3) WILD-TYPE     20     16     14     33     20     10
                               vv
clus                            CLUS_7
  DEL PEAK 44(XQ22.3) MUTATED       13
  DEL PEAK 44(XQ22.3) WILD-TYPE     20
D69V6, multiclass
        clus
vv       DEL PEAK 44(XQ22.3) MUTATED DEL PEAK 44(XQ22.3) WILD-TYPE
  CLUS_1                          27                            20
  CLUS_2                           5                            16
  CLUS_3                          35                            14
  CLUS_4                          13                            33
  CLUS_5                          10                            20
  CLUS_6                          19                            10
  CLUS_7                          13                            20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(XQ22.3) MUTATED       37     23     61
  DEL PEAK 44(XQ22.3) WILD-TYPE     68     27     39
D69V7, multiclass
        clus
vv       DEL PEAK 44(XQ22.3) MUTATED DEL PEAK 44(XQ22.3) WILD-TYPE
  CLUS_1                          37                            68
  CLUS_2                          23                            27
  CLUS_3                          61                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(XQ22.3) MUTATED       32     10     72      7
  DEL PEAK 44(XQ22.3) WILD-TYPE     50     27     42     15
D69V8, multiclass
        clus
vv       DEL PEAK 44(XQ22.3) MUTATED DEL PEAK 44(XQ22.3) WILD-TYPE
  CLUS_1                          32                            50
  CLUS_2                          10                            27
  CLUS_3                          72                            42
  CLUS_4                           7                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(XQ22.3) MUTATED       18     17     29     14     17
  DEL PEAK 44(XQ22.3) WILD-TYPE     40     10     18      9     22
D69V9, multiclass
        clus
vv       DEL PEAK 44(XQ22.3) MUTATED DEL PEAK 44(XQ22.3) WILD-TYPE
  CLUS_1                          18                            40
  CLUS_2                          17                            10
  CLUS_3                          29                            18
  CLUS_4                          14                             9
  CLUS_5                          17                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(XQ22.3) MUTATED       25     33     10     21      6
  DEL PEAK 44(XQ22.3) WILD-TYPE     33     16     11     21     18
D69V10, multiclass
        clus
vv       DEL PEAK 44(XQ22.3) MUTATED DEL PEAK 44(XQ22.3) WILD-TYPE
  CLUS_1                          25                            33
  CLUS_2                          33                            16
  CLUS_3                          10                            11
  CLUS_4                          21                            21
  CLUS_5                           6                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
