[1] "ofn"        "-oTSKCM-TM"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/SKCM-TM/22546664/SKCM-TM.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/SKCM-TM/22533834/transformed.cor.cli.txt"

nPatients in clinical file=368, in cluster file=367, common to both=367
[1]  54 367
[1] "AMP PEAK  1(1P12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE 
                        121                         246 
  AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE 
                        121                         246 
[1] "AMP PEAK  2(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          203                           164 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          203                           164 
[1] "AMP PEAK  3(1Q44) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                        201                         166 
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                        201                         166 
[1] "AMP PEAK  4(3P13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE 
                        103                         264 
  AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE 
                        103                         264 
[1] "AMP PEAK  5(4Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                         65                         302 
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                         65                         302 
[1] "AMP PEAK  6(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE 
                           110                            257 
  AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE 
                           110                            257 
[1] "AMP PEAK  7(5Q35.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE 
                           59                           308 
  AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE 
                           59                           308 
[1] "AMP PEAK  8(6P24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(6P24.3) MUTATED AMP PEAK  8(6P24.3) WILD-TYPE 
                          211                           156 
  AMP PEAK  8(6P24.3) MUTATED AMP PEAK  8(6P24.3) WILD-TYPE 
                          211                           156 
[1] "AMP PEAK  9(6Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE 
                         81                         286 
  AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE 
                         81                         286 
[1] "AMP PEAK 10(7P22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE 
                          209                           158 
  AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE 
                          209                           158 
[1] "AMP PEAK 11(7Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE 
                        225                         142 
  AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE 
                        225                         142 
[1] "AMP PEAK 12(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                           192                            175 
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                           192                            175 
[1] "AMP PEAK 13(11Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE 
                            69                            298 
  AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE 
                            69                            298 
[1] "AMP PEAK 14(12Q14.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE 
                            58                            309 
  AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE 
                            58                            309 
[1] "AMP PEAK 15(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(12Q15) MUTATED AMP PEAK 15(12Q15) WILD-TYPE 
                          59                          308 
  AMP PEAK 15(12Q15) MUTATED AMP PEAK 15(12Q15) WILD-TYPE 
                          59                          308 
[1] "AMP PEAK 16(13Q31.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(13Q31.3) MUTATED AMP PEAK 16(13Q31.3) WILD-TYPE 
                           104                            263 
  AMP PEAK 16(13Q31.3) MUTATED AMP PEAK 16(13Q31.3) WILD-TYPE 
                           104                            263 
[1] "AMP PEAK 17(15Q26.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(15Q26.2) MUTATED AMP PEAK 17(15Q26.2) WILD-TYPE 
                           120                            247 
  AMP PEAK 17(15Q26.2) MUTATED AMP PEAK 17(15Q26.2) WILD-TYPE 
                           120                            247 
[1] "AMP PEAK 18(17Q25.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(17Q25.3) MUTATED AMP PEAK 18(17Q25.3) WILD-TYPE 
                           122                            245 
  AMP PEAK 18(17Q25.3) MUTATED AMP PEAK 18(17Q25.3) WILD-TYPE 
                           122                            245 
[1] "AMP PEAK 19(20Q13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(20Q13.33) MUTATED AMP PEAK 19(20Q13.33) WILD-TYPE 
                            188                             179 
  AMP PEAK 19(20Q13.33) MUTATED AMP PEAK 19(20Q13.33) WILD-TYPE 
                            188                             179 
[1] "AMP PEAK 20(22Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(22Q13.2) MUTATED AMP PEAK 20(22Q13.2) WILD-TYPE 
                           152                            215 
  AMP PEAK 20(22Q13.2) MUTATED AMP PEAK 20(22Q13.2) WILD-TYPE 
                           152                            215 
[1] "DEL PEAK  1(1P36.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            81                            286 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            81                            286 
[1] "DEL PEAK  2(1P22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                           97                           270 
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                           97                           270 
[1] "DEL PEAK  3(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                           93                           274 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                           93                           274 
[1] "DEL PEAK  4(3P25.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(3P25.1) MUTATED DEL PEAK  4(3P25.1) WILD-TYPE 
                           71                           296 
  DEL PEAK  4(3P25.1) MUTATED DEL PEAK  4(3P25.1) WILD-TYPE 
                           71                           296 
[1] "DEL PEAK  5(3Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE 
                            62                            305 
  DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE 
                            62                            305 
[1] "DEL PEAK  6(4P16.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE 
                           91                           276 
  DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE 
                           91                           276 
[1] "DEL PEAK  7(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                          110                           257 
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                          110                           257 
[1] "DEL PEAK  8(5P15.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(5P15.31) MUTATED DEL PEAK  8(5P15.31) WILD-TYPE 
                            79                            288 
  DEL PEAK  8(5P15.31) MUTATED DEL PEAK  8(5P15.31) WILD-TYPE 
                            79                            288 
[1] "DEL PEAK  9(5Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE 
                           97                           270 
  DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE 
                           97                           270 
[1] "DEL PEAK 10(5Q31.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(5Q31.3) MUTATED DEL PEAK 10(5Q31.3) WILD-TYPE 
                          131                           236 
  DEL PEAK 10(5Q31.3) MUTATED DEL PEAK 10(5Q31.3) WILD-TYPE 
                          131                           236 
[1] "DEL PEAK 11(6Q21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(6Q21) MUTATED DEL PEAK 11(6Q21) WILD-TYPE 
                        214                         153 
  DEL PEAK 11(6Q21) MUTATED DEL PEAK 11(6Q21) WILD-TYPE 
                        214                         153 
[1] "DEL PEAK 12(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE 
                        221                         146 
  DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE 
                        221                         146 
[1] "DEL PEAK 13(8P23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE 
                           89                           278 
  DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE 
                           89                           278 
[1] "DEL PEAK 14(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE 
                        249                         118 
  DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE 
                        249                         118 
[1] "DEL PEAK 15(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE 
                          278                            89 
  DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE 
                          278                            89 
[1] "DEL PEAK 16(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE 
                           199                            168 
  DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE 
                           199                            168 
[1] "DEL PEAK 17(10Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE 
                           217                            150 
  DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE 
                           217                            150 
[1] "DEL PEAK 18(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE 
                            230                             137 
  DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE 
                            230                             137 
[1] "DEL PEAK 19(10Q26.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE 
                           236                            131 
  DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE 
                           236                            131 
[1] "DEL PEAK 20(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE 
                           114                            253 
  DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE 
                           114                            253 
[1] "DEL PEAK 21(11Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(11Q23.3) MUTATED DEL PEAK 21(11Q23.3) WILD-TYPE 
                           204                            163 
  DEL PEAK 21(11Q23.3) MUTATED DEL PEAK 21(11Q23.3) WILD-TYPE 
                           204                            163 
[1] "DEL PEAK 22(12Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(12Q23.3) MUTATED DEL PEAK 22(12Q23.3) WILD-TYPE 
                            92                            275 
  DEL PEAK 22(12Q23.3) MUTATED DEL PEAK 22(12Q23.3) WILD-TYPE 
                            92                            275 
[1] "DEL PEAK 23(13Q34) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE 
                          85                          282 
  DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE 
                          85                          282 
[1] "DEL PEAK 24(14Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE 
                           120                            247 
  DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE 
                           120                            247 
[1] "DEL PEAK 25(14Q32.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(14Q32.31) MUTATED DEL PEAK 25(14Q32.31) WILD-TYPE 
                            117                             250 
  DEL PEAK 25(14Q32.31) MUTATED DEL PEAK 25(14Q32.31) WILD-TYPE 
                            117                             250 
[1] "DEL PEAK 26(15Q13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(15Q13.3) MUTATED DEL PEAK 26(15Q13.3) WILD-TYPE 
                            84                            283 
  DEL PEAK 26(15Q13.3) MUTATED DEL PEAK 26(15Q13.3) WILD-TYPE 
                            84                            283 
[1] "DEL PEAK 27(15Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(15Q21.1) MUTATED DEL PEAK 27(15Q21.1) WILD-TYPE 
                            91                            276 
  DEL PEAK 27(15Q21.1) MUTATED DEL PEAK 27(15Q21.1) WILD-TYPE 
                            91                            276 
[1] "DEL PEAK 28(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE 
                            62                            305 
  DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE 
                            62                            305 
[1] "DEL PEAK 29(16Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(16Q12.1) MUTATED DEL PEAK 29(16Q12.1) WILD-TYPE 
                           117                            250 
  DEL PEAK 29(16Q12.1) MUTATED DEL PEAK 29(16Q12.1) WILD-TYPE 
                           117                            250 
[1] "DEL PEAK 30(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE 
                           120                            247 
  DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE 
                           120                            247 
[1] "DEL PEAK 31(16Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(16Q24.3) MUTATED DEL PEAK 31(16Q24.3) WILD-TYPE 
                           133                            234 
  DEL PEAK 31(16Q24.3) MUTATED DEL PEAK 31(16Q24.3) WILD-TYPE 
                           133                            234 
[1] "DEL PEAK 32(17P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(17P13.3) MUTATED DEL PEAK 32(17P13.3) WILD-TYPE 
                           134                            233 
  DEL PEAK 32(17P13.3) MUTATED DEL PEAK 32(17P13.3) WILD-TYPE 
                           134                            233 
[1] "DEL PEAK 33(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE 
                           104                            263 
  DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE 
                           104                            263 
[1] "DEL PEAK 34(XP21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(XP21.1) MUTATED DEL PEAK 34(XP21.1) WILD-TYPE 
                           86                           281 
  DEL PEAK 34(XP21.1) MUTATED DEL PEAK 34(XP21.1) WILD-TYPE 
                           86                           281 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 367 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 367 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=9, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P12) MUTATED       54     41     26
  AMP PEAK  1(1P12) WILD-TYPE    100     69     77
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        54                         100
  CLUS_2                        41                          69
  CLUS_3                        26                          77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P12) MUTATED       36     41     10     34
  AMP PEAK  1(1P12) WILD-TYPE     75     81     24     65
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        36                          75
  CLUS_2                        41                          81
  CLUS_3                        10                          24
  CLUS_4                        34                          65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P12) MUTATED        9     28     13     20     15
  AMP PEAK  1(1P12) WILD-TYPE     30     50     30     49     17
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                         9                          30
  CLUS_2                        28                          50
  CLUS_3                        13                          30
  CLUS_4                        20                          49
  CLUS_5                        15                          17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P12) MUTATED       29     26     30
  AMP PEAK  1(1P12) WILD-TYPE     57     58     61
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        29                          57
  CLUS_2                        26                          58
  CLUS_3                        30                          61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P12) MUTATED       46     18     40     17
  AMP PEAK  1(1P12) WILD-TYPE     70     55     65     56
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        46                          70
  CLUS_2                        18                          55
  CLUS_3                        40                          65
  CLUS_4                        17                          56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P12) MUTATED       38     54     29
  AMP PEAK  1(1P12) WILD-TYPE     67    111     68
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        38                          67
  CLUS_2                        54                         111
  CLUS_3                        29                          68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P12) MUTATED       29     37     27     20
  AMP PEAK  1(1P12) WILD-TYPE     68     66     70     34
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        29                          68
  CLUS_2                        37                          66
  CLUS_3                        27                          70
  CLUS_4                        20                          34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P12) MUTATED       43     25     32     13
  AMP PEAK  1(1P12) WILD-TYPE     89     68     56     25
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        43                          89
  CLUS_2                        25                          68
  CLUS_3                        32                          56
  CLUS_4                        13                          25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P12) MUTATED       24     41     44
  AMP PEAK  1(1P12) WILD-TYPE     61     78     89
D1V9, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        24                          61
  CLUS_2                        41                          78
  CLUS_3                        44                          89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  1(1P12) MUTATED       12      7     20     19     14      3     19
  AMP PEAK  1(1P12) WILD-TYPE     24     17     31     44     24     14     45
                             vv
clus                          CLUS_8 CLUS_9
  AMP PEAK  1(1P12) MUTATED       12      3
  AMP PEAK  1(1P12) WILD-TYPE     17     12
D1V10, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        12                          24
  CLUS_2                         7                          17
  CLUS_3                        20                          31
  CLUS_4                        19                          44
  CLUS_5                        14                          24
  CLUS_6                         3                          14
  CLUS_7                        19                          45
  CLUS_8                        12                          17
  CLUS_9                         3                          12
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       98     71     34
  AMP PEAK  2(1Q21.3) WILD-TYPE     56     39     69
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          98                            56
  CLUS_2                          71                            39
  CLUS_3                          34                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       63     59     17     63
  AMP PEAK  2(1Q21.3) WILD-TYPE     48     63     17     36
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          63                            48
  CLUS_2                          59                            63
  CLUS_3                          17                            17
  CLUS_4                          63                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED       13     43     19     44     25
  AMP PEAK  2(1Q21.3) WILD-TYPE     26     35     24     25      7
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          13                            26
  CLUS_2                          43                            35
  CLUS_3                          19                            24
  CLUS_4                          44                            25
  CLUS_5                          25                             7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       48     39     57
  AMP PEAK  2(1Q21.3) WILD-TYPE     38     45     34
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          48                            38
  CLUS_2                          39                            45
  CLUS_3                          57                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       72     26     56     49
  AMP PEAK  2(1Q21.3) WILD-TYPE     44     47     49     24
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          72                            44
  CLUS_2                          26                            47
  CLUS_3                          56                            49
  CLUS_4                          49                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       64     86     53
  AMP PEAK  2(1Q21.3) WILD-TYPE     41     79     44
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          64                            41
  CLUS_2                          86                            79
  CLUS_3                          53                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       44     62     50     37
  AMP PEAK  2(1Q21.3) WILD-TYPE     53     41     47     17
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          44                            53
  CLUS_2                          62                            41
  CLUS_3                          50                            47
  CLUS_4                          37                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       80     39     48     26
  AMP PEAK  2(1Q21.3) WILD-TYPE     52     54     40     12
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          80                            52
  CLUS_2                          39                            54
  CLUS_3                          48                            40
  CLUS_4                          26                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       38     65     83
  AMP PEAK  2(1Q21.3) WILD-TYPE     47     54     50
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          38                            47
  CLUS_2                          65                            54
  CLUS_3                          83                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED       17     11     28     39     22      4
  AMP PEAK  2(1Q21.3) WILD-TYPE     19     13     23     24     16     13
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  2(1Q21.3) MUTATED       38     21      6
  AMP PEAK  2(1Q21.3) WILD-TYPE     26      8      9
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          17                            19
  CLUS_2                          11                            13
  CLUS_3                          28                            23
  CLUS_4                          39                            24
  CLUS_5                          22                            16
  CLUS_6                           4                            13
  CLUS_7                          38                            26
  CLUS_8                          21                             8
  CLUS_9                           6                             9
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED       96     70     35
  AMP PEAK  3(1Q44) WILD-TYPE     58     40     68
D3V1, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        96                          58
  CLUS_2                        70                          40
  CLUS_3                        35                          68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q44) MUTATED       60     57     19     64
  AMP PEAK  3(1Q44) WILD-TYPE     51     65     15     35
D3V2, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        60                          51
  CLUS_2                        57                          65
  CLUS_3                        19                          15
  CLUS_4                        64                          35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q44) MUTATED       14     40     21     41     27
  AMP PEAK  3(1Q44) WILD-TYPE     25     38     22     28      5
D3V3, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        14                          25
  CLUS_2                        40                          38
  CLUS_3                        21                          22
  CLUS_4                        41                          28
  CLUS_5                        27                           5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED       45     40     58
  AMP PEAK  3(1Q44) WILD-TYPE     41     44     33
D3V4, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        45                          41
  CLUS_2                        40                          44
  CLUS_3                        58                          33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q44) MUTATED       71     28     53     49
  AMP PEAK  3(1Q44) WILD-TYPE     45     45     52     24
D3V5, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        71                          45
  CLUS_2                        28                          45
  CLUS_3                        53                          52
  CLUS_4                        49                          24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED       67     82     52
  AMP PEAK  3(1Q44) WILD-TYPE     38     83     45
D3V6, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        67                          38
  CLUS_2                        82                          83
  CLUS_3                        52                          45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q44) MUTATED       40     63     48     41
  AMP PEAK  3(1Q44) WILD-TYPE     57     40     49     13
D3V7, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        40                          57
  CLUS_2                        63                          40
  CLUS_3                        48                          49
  CLUS_4                        41                          13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q44) MUTATED       77     38     48     29
  AMP PEAK  3(1Q44) WILD-TYPE     55     55     40      9
D3V8, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        77                          55
  CLUS_2                        38                          55
  CLUS_3                        48                          40
  CLUS_4                        29                           9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED       36     64     86
  AMP PEAK  3(1Q44) WILD-TYPE     49     55     47
D3V9, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        36                          49
  CLUS_2                        64                          55
  CLUS_3                        86                          47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  3(1Q44) MUTATED       16     11     23     40     21      6     38
  AMP PEAK  3(1Q44) WILD-TYPE     20     13     28     23     17     11     26
                             vv
clus                          CLUS_8 CLUS_9
  AMP PEAK  3(1Q44) MUTATED       24      7
  AMP PEAK  3(1Q44) WILD-TYPE      5      8
D3V10, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        16                          20
  CLUS_2                        11                          13
  CLUS_3                        23                          28
  CLUS_4                        40                          23
  CLUS_5                        21                          17
  CLUS_6                         6                          11
  CLUS_7                        38                          26
  CLUS_8                        24                           5
  CLUS_9                         7                           8
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(3P13) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3P13) MUTATED       50     31     22
  AMP PEAK  4(3P13) WILD-TYPE    104     79     81
D4V1, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                        50                         104
  CLUS_2                        31                          79
  CLUS_3                        22                          81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3P13) MUTATED       28     38      9     28
  AMP PEAK  4(3P13) WILD-TYPE     83     84     25     71
D4V2, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                        28                          83
  CLUS_2                        38                          84
  CLUS_3                         9                          25
  CLUS_4                        28                          71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(3P13) MUTATED       17     26     14     16     10
  AMP PEAK  4(3P13) WILD-TYPE     22     52     29     53     22
D4V3, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                        17                          22
  CLUS_2                        26                          52
  CLUS_3                        14                          29
  CLUS_4                        16                          53
  CLUS_5                        10                          22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3P13) MUTATED       25     29     29
  AMP PEAK  4(3P13) WILD-TYPE     61     55     62
D4V4, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                        25                          61
  CLUS_2                        29                          55
  CLUS_3                        29                          62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3P13) MUTATED       37     20     28     18
  AMP PEAK  4(3P13) WILD-TYPE     79     53     77     55
D4V5, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                        37                          79
  CLUS_2                        20                          53
  CLUS_3                        28                          77
  CLUS_4                        18                          55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3P13) MUTATED       26     52     25
  AMP PEAK  4(3P13) WILD-TYPE     79    113     72
D4V6, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                        26                          79
  CLUS_2                        52                         113
  CLUS_3                        25                          72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3P13) MUTATED       25     30     26     16
  AMP PEAK  4(3P13) WILD-TYPE     72     73     71     38
D4V7, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                        25                          72
  CLUS_2                        30                          73
  CLUS_3                        26                          71
  CLUS_4                        16                          38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3P13) MUTATED       46     19     22     10
  AMP PEAK  4(3P13) WILD-TYPE     86     74     66     28
D4V8, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                        46                          86
  CLUS_2                        19                          74
  CLUS_3                        22                          66
  CLUS_4                        10                          28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3P13) MUTATED       23     36     35
  AMP PEAK  4(3P13) WILD-TYPE     62     83     98
D4V9, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                        23                          62
  CLUS_2                        36                          83
  CLUS_3                        35                          98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  4(3P13) MUTATED       13      7     18     16      8      4     17
  AMP PEAK  4(3P13) WILD-TYPE     23     17     33     47     30     13     47
                             vv
clus                          CLUS_8 CLUS_9
  AMP PEAK  4(3P13) MUTATED        7      4
  AMP PEAK  4(3P13) WILD-TYPE     22     11
D4V10, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                        13                          23
  CLUS_2                         7                          17
  CLUS_3                        18                          33
  CLUS_4                        16                          47
  CLUS_5                         8                          30
  CLUS_6                         4                          13
  CLUS_7                        17                          47
  CLUS_8                         7                          22
  CLUS_9                         4                          11
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(4Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED       33     20     12
  AMP PEAK  5(4Q12) WILD-TYPE    121     90     91
D5V1, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        33                         121
  CLUS_2                        20                          90
  CLUS_3                        12                          91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED       21     17      5     22
  AMP PEAK  5(4Q12) WILD-TYPE     90    105     29     77
D5V2, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        21                          90
  CLUS_2                        17                         105
  CLUS_3                         5                          29
  CLUS_4                        22                          77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(4Q12) MUTATED        5     11     10     19      5
  AMP PEAK  5(4Q12) WILD-TYPE     34     67     33     50     27
D5V3, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         5                          34
  CLUS_2                        11                          67
  CLUS_3                        10                          33
  CLUS_4                        19                          50
  CLUS_5                         5                          27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED       19     12     19
  AMP PEAK  5(4Q12) WILD-TYPE     67     72     72
D5V4, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        19                          67
  CLUS_2                        12                          72
  CLUS_3                        19                          72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED       20     13     15     17
  AMP PEAK  5(4Q12) WILD-TYPE     96     60     90     56
D5V5, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        20                          96
  CLUS_2                        13                          60
  CLUS_3                        15                          90
  CLUS_4                        17                          56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED       25     29     11
  AMP PEAK  5(4Q12) WILD-TYPE     80    136     86
D5V6, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        25                          80
  CLUS_2                        29                         136
  CLUS_3                        11                          86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED       12     29     11     13
  AMP PEAK  5(4Q12) WILD-TYPE     85     74     86     41
D5V7, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        12                          85
  CLUS_2                        29                          74
  CLUS_3                        11                          86
  CLUS_4                        13                          41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED       38      8     14      5
  AMP PEAK  5(4Q12) WILD-TYPE     94     85     74     33
D5V8, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        38                          94
  CLUS_2                         8                          85
  CLUS_3                        14                          74
  CLUS_4                         5                          33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED       16     15     32
  AMP PEAK  5(4Q12) WILD-TYPE     69    104    101
D5V9, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        16                          69
  CLUS_2                        15                         104
  CLUS_3                        32                         101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  5(4Q12) MUTATED        4      6     13     17      4      3     11
  AMP PEAK  5(4Q12) WILD-TYPE     32     18     38     46     34     14     53
                             vv
clus                          CLUS_8 CLUS_9
  AMP PEAK  5(4Q12) MUTATED        3      2
  AMP PEAK  5(4Q12) WILD-TYPE     26     13
D5V10, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         4                          32
  CLUS_2                         6                          18
  CLUS_3                        13                          38
  CLUS_4                        17                          46
  CLUS_5                         4                          34
  CLUS_6                         3                          14
  CLUS_7                        11                          53
  CLUS_8                         3                          26
  CLUS_9                         2                          13
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P15.33) MUTATED       72     23     15
  AMP PEAK  6(5P15.33) WILD-TYPE     82     87     88
D6V1, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           72                             82
  CLUS_2                           23                             87
  CLUS_3                           15                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5P15.33) MUTATED       35     29     10     35
  AMP PEAK  6(5P15.33) WILD-TYPE     76     93     24     64
D6V2, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           35                             76
  CLUS_2                           29                             93
  CLUS_3                           10                             24
  CLUS_4                           35                             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(5P15.33) MUTATED        8     18     14     24      9
  AMP PEAK  6(5P15.33) WILD-TYPE     31     60     29     45     23
D6V3, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                            8                             31
  CLUS_2                           18                             60
  CLUS_3                           14                             29
  CLUS_4                           24                             45
  CLUS_5                            9                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P15.33) MUTATED       28     19     26
  AMP PEAK  6(5P15.33) WILD-TYPE     58     65     65
D6V4, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           28                             58
  CLUS_2                           19                             65
  CLUS_3                           26                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5P15.33) MUTATED       42     15     32     21
  AMP PEAK  6(5P15.33) WILD-TYPE     74     58     73     52
D6V5, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           42                             74
  CLUS_2                           15                             58
  CLUS_3                           32                             73
  CLUS_4                           21                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P15.33) MUTATED       37     42     31
  AMP PEAK  6(5P15.33) WILD-TYPE     68    123     66
D6V6, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           37                             68
  CLUS_2                           42                            123
  CLUS_3                           31                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5P15.33) MUTATED       30     38     15     21
  AMP PEAK  6(5P15.33) WILD-TYPE     67     65     82     33
D6V7, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           30                             67
  CLUS_2                           38                             65
  CLUS_3                           15                             82
  CLUS_4                           21                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5P15.33) MUTATED       44     20     26     14
  AMP PEAK  6(5P15.33) WILD-TYPE     88     73     62     24
D6V8, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           44                             88
  CLUS_2                           20                             73
  CLUS_3                           26                             62
  CLUS_4                           14                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P15.33) MUTATED       26     27     47
  AMP PEAK  6(5P15.33) WILD-TYPE     59     92     86
D6V9, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           26                             59
  CLUS_2                           27                             92
  CLUS_3                           47                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(5P15.33) MUTATED        6      5     17     26      9      6
  AMP PEAK  6(5P15.33) WILD-TYPE     30     19     34     37     29     11
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  6(5P15.33) MUTATED       16     11      4
  AMP PEAK  6(5P15.33) WILD-TYPE     48     18     11
D6V10, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                            6                             30
  CLUS_2                            5                             19
  CLUS_3                           17                             34
  CLUS_4                           26                             37
  CLUS_5                            9                             29
  CLUS_6                            6                             11
  CLUS_7                           16                             48
  CLUS_8                           11                             18
  CLUS_9                            4                             11
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(5Q35.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5Q35.3) MUTATED       46      8      5
  AMP PEAK  7(5Q35.3) WILD-TYPE    108    102     98
D7V1, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                          46                           108
  CLUS_2                           8                           102
  CLUS_3                           5                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5Q35.3) MUTATED       24     11      8     16
  AMP PEAK  7(5Q35.3) WILD-TYPE     87    111     26     83
D7V2, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                          24                            87
  CLUS_2                          11                           111
  CLUS_3                           8                            26
  CLUS_4                          16                            83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(5Q35.3) MUTATED        5     10      8     16      4
  AMP PEAK  7(5Q35.3) WILD-TYPE     34     68     35     53     28
D7V3, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                           5                            34
  CLUS_2                          10                            68
  CLUS_3                           8                            35
  CLUS_4                          16                            53
  CLUS_5                           4                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5Q35.3) MUTATED       12      9     22
  AMP PEAK  7(5Q35.3) WILD-TYPE     74     75     69
D7V4, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                          12                            74
  CLUS_2                           9                            75
  CLUS_3                          22                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5Q35.3) MUTATED       19      6     20     14
  AMP PEAK  7(5Q35.3) WILD-TYPE     97     67     85     59
D7V5, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                          19                            97
  CLUS_2                           6                            67
  CLUS_3                          20                            85
  CLUS_4                          14                            59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5Q35.3) MUTATED       21     19     19
  AMP PEAK  7(5Q35.3) WILD-TYPE     84    146     78
D7V6, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                          21                            84
  CLUS_2                          19                           146
  CLUS_3                          19                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5Q35.3) MUTATED       14     20     11     10
  AMP PEAK  7(5Q35.3) WILD-TYPE     83     83     86     44
D7V7, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                          14                            83
  CLUS_2                          20                            83
  CLUS_3                          11                            86
  CLUS_4                          10                            44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5Q35.3) MUTATED       26      9     16      4
  AMP PEAK  7(5Q35.3) WILD-TYPE    106     84     72     34
D7V8, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                          26                           106
  CLUS_2                           9                            84
  CLUS_3                          16                            72
  CLUS_4                           4                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5Q35.3) MUTATED       15     11     26
  AMP PEAK  7(5Q35.3) WILD-TYPE     70    108    107
D7V9, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                          15                            70
  CLUS_2                          11                           108
  CLUS_3                          26                           107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(5Q35.3) MUTATED        3      3      9     14      7      4
  AMP PEAK  7(5Q35.3) WILD-TYPE     33     21     42     49     31     13
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  7(5Q35.3) MUTATED        7      3      2
  AMP PEAK  7(5Q35.3) WILD-TYPE     57     26     13
D7V10, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                           3                            33
  CLUS_2                           3                            21
  CLUS_3                           9                            42
  CLUS_4                          14                            49
  CLUS_5                           7                            31
  CLUS_6                           4                            13
  CLUS_7                           7                            57
  CLUS_8                           3                            26
  CLUS_9                           2                            13
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(6P24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P24.3) MUTATED      105     71     35
  AMP PEAK  8(6P24.3) WILD-TYPE     49     39     68
D8V1, multiclass
        clus
vv       AMP PEAK  8(6P24.3) MUTATED AMP PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                         105                            49
  CLUS_2                          71                            39
  CLUS_3                          35                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P24.3) MUTATED       71     48     21     70
  AMP PEAK  8(6P24.3) WILD-TYPE     40     74     13     29
D8V2, multiclass
        clus
vv       AMP PEAK  8(6P24.3) MUTATED AMP PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                          71                            40
  CLUS_2                          48                            74
  CLUS_3                          21                            13
  CLUS_4                          70                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6P24.3) MUTATED       17     45     22     50     16
  AMP PEAK  8(6P24.3) WILD-TYPE     22     33     21     19     16
D8V3, multiclass
        clus
vv       AMP PEAK  8(6P24.3) MUTATED AMP PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                          17                            22
  CLUS_2                          45                            33
  CLUS_3                          22                            21
  CLUS_4                          50                            19
  CLUS_5                          16                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P24.3) MUTATED       57     40     53
  AMP PEAK  8(6P24.3) WILD-TYPE     29     44     38
D8V4, multiclass
        clus
vv       AMP PEAK  8(6P24.3) MUTATED AMP PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                          57                            29
  CLUS_2                          40                            44
  CLUS_3                          53                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P24.3) MUTATED       72     35     52     52
  AMP PEAK  8(6P24.3) WILD-TYPE     44     38     53     21
D8V5, multiclass
        clus
vv       AMP PEAK  8(6P24.3) MUTATED AMP PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                          72                            44
  CLUS_2                          35                            38
  CLUS_3                          52                            53
  CLUS_4                          52                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P24.3) MUTATED       72     95     44
  AMP PEAK  8(6P24.3) WILD-TYPE     33     70     53
D8V6, multiclass
        clus
vv       AMP PEAK  8(6P24.3) MUTATED AMP PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                          72                            33
  CLUS_2                          95                            70
  CLUS_3                          44                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P24.3) MUTATED       48     73     48     33
  AMP PEAK  8(6P24.3) WILD-TYPE     49     30     49     21
D8V7, multiclass
        clus
vv       AMP PEAK  8(6P24.3) MUTATED AMP PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                          48                            49
  CLUS_2                          73                            30
  CLUS_3                          48                            49
  CLUS_4                          33                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P24.3) MUTATED       91     35     55     21
  AMP PEAK  8(6P24.3) WILD-TYPE     41     58     33     17
D8V8, multiclass
        clus
vv       AMP PEAK  8(6P24.3) MUTATED AMP PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                          91                            41
  CLUS_2                          35                            58
  CLUS_3                          55                            33
  CLUS_4                          21                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P24.3) MUTATED       36     64     93
  AMP PEAK  8(6P24.3) WILD-TYPE     49     55     40
D8V9, multiclass
        clus
vv       AMP PEAK  8(6P24.3) MUTATED AMP PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                          36                            49
  CLUS_2                          64                            55
  CLUS_3                          93                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(6P24.3) MUTATED       17     14     25     51     15      5
  AMP PEAK  8(6P24.3) WILD-TYPE     19     10     26     12     23     12
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  8(6P24.3) MUTATED       39     16     11
  AMP PEAK  8(6P24.3) WILD-TYPE     25     13      4
D8V10, multiclass
        clus
vv       AMP PEAK  8(6P24.3) MUTATED AMP PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                          17                            19
  CLUS_2                          14                            10
  CLUS_3                          25                            26
  CLUS_4                          51                            12
  CLUS_5                          15                            23
  CLUS_6                           5                            12
  CLUS_7                          39                            25
  CLUS_8                          16                            13
  CLUS_9                          11                             4
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(6Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q12) MUTATED       38     25     18
  AMP PEAK  9(6Q12) WILD-TYPE    116     85     85
D9V1, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        38                         116
  CLUS_2                        25                          85
  CLUS_3                        18                          85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q12) MUTATED       22     25     11     22
  AMP PEAK  9(6Q12) WILD-TYPE     89     97     23     77
D9V2, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        22                          89
  CLUS_2                        25                          97
  CLUS_3                        11                          23
  CLUS_4                        22                          77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(6Q12) MUTATED        9     13      8     17      9
  AMP PEAK  9(6Q12) WILD-TYPE     30     65     35     52     23
D9V3, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                         9                          30
  CLUS_2                        13                          65
  CLUS_3                         8                          35
  CLUS_4                        17                          52
  CLUS_5                         9                          23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q12) MUTATED       26     10     20
  AMP PEAK  9(6Q12) WILD-TYPE     60     74     71
D9V4, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        26                          60
  CLUS_2                        10                          74
  CLUS_3                        20                          71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q12) MUTATED       29     20     17     15
  AMP PEAK  9(6Q12) WILD-TYPE     87     53     88     58
D9V5, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        29                          87
  CLUS_2                        20                          53
  CLUS_3                        17                          88
  CLUS_4                        15                          58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q12) MUTATED       23     42     16
  AMP PEAK  9(6Q12) WILD-TYPE     82    123     81
D9V6, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        23                          82
  CLUS_2                        42                         123
  CLUS_3                        16                          81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q12) MUTATED       25     24     20      9
  AMP PEAK  9(6Q12) WILD-TYPE     72     79     77     45
D9V7, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        25                          72
  CLUS_2                        24                          79
  CLUS_3                        20                          77
  CLUS_4                         9                          45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q12) MUTATED       35     14     25      4
  AMP PEAK  9(6Q12) WILD-TYPE     97     79     63     34
D9V8, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        35                          97
  CLUS_2                        14                          79
  CLUS_3                        25                          63
  CLUS_4                         4                          34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q12) MUTATED       17     22     36
  AMP PEAK  9(6Q12) WILD-TYPE     68     97     97
D9V9, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        17                          68
  CLUS_2                        22                          97
  CLUS_3                        36                          97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  9(6Q12) MUTATED        8      5     14     18      7      1     14
  AMP PEAK  9(6Q12) WILD-TYPE     28     19     37     45     31     16     50
                             vv
clus                          CLUS_8 CLUS_9
  AMP PEAK  9(6Q12) MUTATED        3      5
  AMP PEAK  9(6Q12) WILD-TYPE     26     10
D9V10, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                         8                          28
  CLUS_2                         5                          19
  CLUS_3                        14                          37
  CLUS_4                        18                          45
  CLUS_5                         7                          31
  CLUS_6                         1                          16
  CLUS_7                        14                          50
  CLUS_8                         3                          26
  CLUS_9                         5                          10
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(7P22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P22.1) MUTATED      103     63     43
  AMP PEAK 10(7P22.1) WILD-TYPE     51     47     60
D10V1, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                         103                            51
  CLUS_2                          63                            47
  CLUS_3                          43                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P22.1) MUTATED       58     64     22     64
  AMP PEAK 10(7P22.1) WILD-TYPE     53     58     12     35
D10V2, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          58                            53
  CLUS_2                          64                            58
  CLUS_3                          22                            12
  CLUS_4                          64                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(7P22.1) MUTATED       23     42     21     45     18
  AMP PEAK 10(7P22.1) WILD-TYPE     16     36     22     24     14
D10V3, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          23                            16
  CLUS_2                          42                            36
  CLUS_3                          21                            22
  CLUS_4                          45                            24
  CLUS_5                          18                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P22.1) MUTATED       52     42     55
  AMP PEAK 10(7P22.1) WILD-TYPE     34     42     36
D10V4, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          52                            34
  CLUS_2                          42                            42
  CLUS_3                          55                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P22.1) MUTATED       61     38     68     42
  AMP PEAK 10(7P22.1) WILD-TYPE     55     35     37     31
D10V5, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          61                            55
  CLUS_2                          38                            35
  CLUS_3                          68                            37
  CLUS_4                          42                            31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P22.1) MUTATED       65     84     60
  AMP PEAK 10(7P22.1) WILD-TYPE     40     81     37
D10V6, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          65                            40
  CLUS_2                          84                            81
  CLUS_3                          60                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P22.1) MUTATED       55     58     52     32
  AMP PEAK 10(7P22.1) WILD-TYPE     42     45     45     22
D10V7, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          55                            42
  CLUS_2                          58                            45
  CLUS_3                          52                            45
  CLUS_4                          32                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P22.1) MUTATED       70     57     46     24
  AMP PEAK 10(7P22.1) WILD-TYPE     62     36     42     14
D10V8, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          70                            62
  CLUS_2                          57                            36
  CLUS_3                          46                            42
  CLUS_4                          24                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P22.1) MUTATED       46     69     75
  AMP PEAK 10(7P22.1) WILD-TYPE     39     50     58
D10V9, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          46                            39
  CLUS_2                          69                            50
  CLUS_3                          75                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(7P22.1) MUTATED       19      9     32     32     25     13
  AMP PEAK 10(7P22.1) WILD-TYPE     17     15     19     31     13      4
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 10(7P22.1) MUTATED       35     18      7
  AMP PEAK 10(7P22.1) WILD-TYPE     29     11      8
D10V10, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          19                            17
  CLUS_2                           9                            15
  CLUS_3                          32                            19
  CLUS_4                          32                            31
  CLUS_5                          25                            13
  CLUS_6                          13                             4
  CLUS_7                          35                            29
  CLUS_8                          18                            11
  CLUS_9                           7                             8
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(7Q34) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q34) MUTATED      110     63     52
  AMP PEAK 11(7Q34) WILD-TYPE     44     47     51
D11V1, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                       110                          44
  CLUS_2                        63                          47
  CLUS_3                        52                          51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q34) MUTATED       66     74     20     64
  AMP PEAK 11(7Q34) WILD-TYPE     45     48     14     35
D11V2, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        66                          45
  CLUS_2                        74                          48
  CLUS_3                        20                          14
  CLUS_4                        64                          35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(7Q34) MUTATED       27     42     27     49     21
  AMP PEAK 11(7Q34) WILD-TYPE     12     36     16     20     11
D11V3, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        27                          12
  CLUS_2                        42                          36
  CLUS_3                        27                          16
  CLUS_4                        49                          20
  CLUS_5                        21                          11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q34) MUTATED       58     50     58
  AMP PEAK 11(7Q34) WILD-TYPE     28     34     33
D11V4, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        58                          28
  CLUS_2                        50                          34
  CLUS_3                        58                          33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q34) MUTATED       69     43     73     40
  AMP PEAK 11(7Q34) WILD-TYPE     47     30     32     33
D11V5, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        69                          47
  CLUS_2                        43                          30
  CLUS_3                        73                          32
  CLUS_4                        40                          33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q34) MUTATED       59     99     67
  AMP PEAK 11(7Q34) WILD-TYPE     46     66     30
D11V6, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        59                          46
  CLUS_2                        99                          66
  CLUS_3                        67                          30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q34) MUTATED       56     68     57     33
  AMP PEAK 11(7Q34) WILD-TYPE     41     35     40     21
D11V7, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        56                          41
  CLUS_2                        68                          35
  CLUS_3                        57                          40
  CLUS_4                        33                          21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q34) MUTATED       74     54     59     27
  AMP PEAK 11(7Q34) WILD-TYPE     58     39     29     11
D11V8, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        74                          58
  CLUS_2                        54                          39
  CLUS_3                        59                          29
  CLUS_4                        27                          11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q34) MUTATED       55     75     76
  AMP PEAK 11(7Q34) WILD-TYPE     30     44     57
D11V9, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        55                          30
  CLUS_2                        75                          44
  CLUS_3                        76                          57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 11(7Q34) MUTATED       18     13     42     32     23     15     36
  AMP PEAK 11(7Q34) WILD-TYPE     18     11      9     31     15      2     28
                             vv
clus                          CLUS_8 CLUS_9
  AMP PEAK 11(7Q34) MUTATED       20      7
  AMP PEAK 11(7Q34) WILD-TYPE      9      8
D11V10, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        18                          18
  CLUS_2                        13                          11
  CLUS_3                        42                           9
  CLUS_4                        32                          31
  CLUS_5                        23                          15
  CLUS_6                        15                           2
  CLUS_7                        36                          28
  CLUS_8                        20                           9
  CLUS_9                         7                           8
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED       91     68     33
  AMP PEAK 12(8Q24.21) WILD-TYPE     63     42     70
D12V1, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           91                             63
  CLUS_2                           68                             42
  CLUS_3                           33                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q24.21) MUTATED       44     59     26     62
  AMP PEAK 12(8Q24.21) WILD-TYPE     67     63      8     37
D12V2, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           44                             67
  CLUS_2                           59                             63
  CLUS_3                           26                              8
  CLUS_4                           62                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(8Q24.21) MUTATED       16     39     22     36     20
  AMP PEAK 12(8Q24.21) WILD-TYPE     23     39     21     33     12
D12V3, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           16                             23
  CLUS_2                           39                             39
  CLUS_3                           22                             21
  CLUS_4                           36                             33
  CLUS_5                           20                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED       43     42     48
  AMP PEAK 12(8Q24.21) WILD-TYPE     43     42     43
D12V4, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           43                             43
  CLUS_2                           42                             42
  CLUS_3                           48                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q24.21) MUTATED       51     29     57     55
  AMP PEAK 12(8Q24.21) WILD-TYPE     65     44     48     18
D12V5, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           51                             65
  CLUS_2                           29                             44
  CLUS_3                           57                             48
  CLUS_4                           55                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED       62     75     55
  AMP PEAK 12(8Q24.21) WILD-TYPE     43     90     42
D12V6, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           62                             43
  CLUS_2                           75                             90
  CLUS_3                           55                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q24.21) MUTATED       48     55     52     29
  AMP PEAK 12(8Q24.21) WILD-TYPE     49     48     45     25
D12V7, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           48                             49
  CLUS_2                           55                             48
  CLUS_3                           52                             45
  CLUS_4                           29                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q24.21) MUTATED       78     40     47     19
  AMP PEAK 12(8Q24.21) WILD-TYPE     54     53     41     19
D12V8, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           78                             54
  CLUS_2                           40                             53
  CLUS_3                           47                             41
  CLUS_4                           19                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED       39     65     73
  AMP PEAK 12(8Q24.21) WILD-TYPE     46     54     60
D12V9, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           39                             46
  CLUS_2                           65                             54
  CLUS_3                           73                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8Q24.21) MUTATED       13     13     26     38     24     10
  AMP PEAK 12(8Q24.21) WILD-TYPE     23     11     25     25     14      7
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 12(8Q24.21) MUTATED       34     14      5
  AMP PEAK 12(8Q24.21) WILD-TYPE     30     15     10
D12V10, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           13                             23
  CLUS_2                           13                             11
  CLUS_3                           26                             25
  CLUS_4                           38                             25
  CLUS_5                           24                             14
  CLUS_6                           10                              7
  CLUS_7                           34                             30
  CLUS_8                           14                             15
  CLUS_9                            5                             10
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(11Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11Q13.3) MUTATED       40     15     14
  AMP PEAK 13(11Q13.3) WILD-TYPE    114     95     89
D13V1, multiclass
        clus
vv       AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE
  CLUS_1                           40                            114
  CLUS_2                           15                             95
  CLUS_3                           14                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(11Q13.3) MUTATED       15     21     11     22
  AMP PEAK 13(11Q13.3) WILD-TYPE     96    101     23     77
D13V2, multiclass
        clus
vv       AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE
  CLUS_1                           15                             96
  CLUS_2                           21                            101
  CLUS_3                           11                             23
  CLUS_4                           22                             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(11Q13.3) MUTATED        6     17     11     14      5
  AMP PEAK 13(11Q13.3) WILD-TYPE     33     61     32     55     27
D13V3, multiclass
        clus
vv       AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE
  CLUS_1                            6                             33
  CLUS_2                           17                             61
  CLUS_3                           11                             32
  CLUS_4                           14                             55
  CLUS_5                            5                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11Q13.3) MUTATED       21     14     18
  AMP PEAK 13(11Q13.3) WILD-TYPE     65     70     73
D13V4, multiclass
        clus
vv       AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE
  CLUS_1                           21                             65
  CLUS_2                           14                             70
  CLUS_3                           18                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(11Q13.3) MUTATED       26     10     19     14
  AMP PEAK 13(11Q13.3) WILD-TYPE     90     63     86     59
D13V5, multiclass
        clus
vv       AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE
  CLUS_1                           26                             90
  CLUS_2                           10                             63
  CLUS_3                           19                             86
  CLUS_4                           14                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11Q13.3) MUTATED       22     30     17
  AMP PEAK 13(11Q13.3) WILD-TYPE     83    135     80
D13V6, multiclass
        clus
vv       AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE
  CLUS_1                           22                             83
  CLUS_2                           30                            135
  CLUS_3                           17                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(11Q13.3) MUTATED       20     16     21      8
  AMP PEAK 13(11Q13.3) WILD-TYPE     77     87     76     46
D13V7, multiclass
        clus
vv       AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE
  CLUS_1                           20                             77
  CLUS_2                           16                             87
  CLUS_3                           21                             76
  CLUS_4                            8                             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(11Q13.3) MUTATED       30     15     18      2
  AMP PEAK 13(11Q13.3) WILD-TYPE    102     78     70     36
D13V8, multiclass
        clus
vv       AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE
  CLUS_1                           30                            102
  CLUS_2                           15                             78
  CLUS_3                           18                             70
  CLUS_4                            2                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11Q13.3) MUTATED       17     19     25
  AMP PEAK 13(11Q13.3) WILD-TYPE     68    100    108
D13V9, multiclass
        clus
vv       AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE
  CLUS_1                           17                             68
  CLUS_2                           19                            100
  CLUS_3                           25                            108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(11Q13.3) MUTATED        7      7     14     12      6      3
  AMP PEAK 13(11Q13.3) WILD-TYPE     29     17     37     51     32     14
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 13(11Q13.3) MUTATED        8      2      2
  AMP PEAK 13(11Q13.3) WILD-TYPE     56     27     13
D13V10, multiclass
        clus
vv       AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE
  CLUS_1                            7                             29
  CLUS_2                            7                             17
  CLUS_3                           14                             37
  CLUS_4                           12                             51
  CLUS_5                            6                             32
  CLUS_6                            3                             14
  CLUS_7                            8                             56
  CLUS_8                            2                             27
  CLUS_9                            2                             13
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(12Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12Q14.1) MUTATED       30     20      8
  AMP PEAK 14(12Q14.1) WILD-TYPE    124     90     95
D14V1, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                           30                            124
  CLUS_2                           20                             90
  CLUS_3                            8                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q14.1) MUTATED       16     16      8     18
  AMP PEAK 14(12Q14.1) WILD-TYPE     95    106     26     81
D14V2, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                           16                             95
  CLUS_2                           16                            106
  CLUS_3                            8                             26
  CLUS_4                           18                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(12Q14.1) MUTATED        5     11      6     13      6
  AMP PEAK 14(12Q14.1) WILD-TYPE     34     67     37     56     26
D14V3, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                            5                             34
  CLUS_2                           11                             67
  CLUS_3                            6                             37
  CLUS_4                           13                             56
  CLUS_5                            6                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12Q14.1) MUTATED       13      9     19
  AMP PEAK 14(12Q14.1) WILD-TYPE     73     75     72
D14V4, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                           13                             73
  CLUS_2                            9                             75
  CLUS_3                           19                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q14.1) MUTATED       23      7     18     10
  AMP PEAK 14(12Q14.1) WILD-TYPE     93     66     87     63
D14V5, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                           23                             93
  CLUS_2                            7                             66
  CLUS_3                           18                             87
  CLUS_4                           10                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12Q14.1) MUTATED       20     21     17
  AMP PEAK 14(12Q14.1) WILD-TYPE     85    144     80
D14V6, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                           20                             85
  CLUS_2                           21                            144
  CLUS_3                           17                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q14.1) MUTATED       17     18     13      9
  AMP PEAK 14(12Q14.1) WILD-TYPE     80     85     84     45
D14V7, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                           17                             80
  CLUS_2                           18                             85
  CLUS_3                           13                             84
  CLUS_4                            9                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q14.1) MUTATED       19     11     19      8
  AMP PEAK 14(12Q14.1) WILD-TYPE    113     82     69     30
D14V8, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                           19                            113
  CLUS_2                           11                             82
  CLUS_3                           19                             69
  CLUS_4                            8                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12Q14.1) MUTATED       10     21     26
  AMP PEAK 14(12Q14.1) WILD-TYPE     75     98    107
D14V9, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                           10                             75
  CLUS_2                           21                             98
  CLUS_3                           26                            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(12Q14.1) MUTATED        1      2     14      9      9      3
  AMP PEAK 14(12Q14.1) WILD-TYPE     35     22     37     54     29     14
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 14(12Q14.1) MUTATED       14      5      0
  AMP PEAK 14(12Q14.1) WILD-TYPE     50     24     15
D14V10, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                            1                             35
  CLUS_2                            2                             22
  CLUS_3                           14                             37
  CLUS_4                            9                             54
  CLUS_5                            9                             29
  CLUS_6                            3                             14
  CLUS_7                           14                             50
  CLUS_8                            5                             24
  CLUS_9                            0                             15
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(12Q15) MUTATED       28     20     11
  AMP PEAK 15(12Q15) WILD-TYPE    126     90     92
D15V1, multiclass
        clus
vv       AMP PEAK 15(12Q15) MUTATED AMP PEAK 15(12Q15) WILD-TYPE
  CLUS_1                         28                          126
  CLUS_2                         20                           90
  CLUS_3                         11                           92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(12Q15) MUTATED       19     15      7     18
  AMP PEAK 15(12Q15) WILD-TYPE     92    107     27     81
D15V2, multiclass
        clus
vv       AMP PEAK 15(12Q15) MUTATED AMP PEAK 15(12Q15) WILD-TYPE
  CLUS_1                         19                           92
  CLUS_2                         15                          107
  CLUS_3                          7                           27
  CLUS_4                         18                           81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(12Q15) MUTATED        4      9      7     13     10
  AMP PEAK 15(12Q15) WILD-TYPE     35     69     36     56     22
D15V3, multiclass
        clus
vv       AMP PEAK 15(12Q15) MUTATED AMP PEAK 15(12Q15) WILD-TYPE
  CLUS_1                          4                           35
  CLUS_2                          9                           69
  CLUS_3                          7                           36
  CLUS_4                         13                           56
  CLUS_5                         10                           22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(12Q15) MUTATED       14      9     20
  AMP PEAK 15(12Q15) WILD-TYPE     72     75     71
D15V4, multiclass
        clus
vv       AMP PEAK 15(12Q15) MUTATED AMP PEAK 15(12Q15) WILD-TYPE
  CLUS_1                         14                           72
  CLUS_2                          9                           75
  CLUS_3                         20                           71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(12Q15) MUTATED       25      8     17      9
  AMP PEAK 15(12Q15) WILD-TYPE     91     65     88     64
D15V5, multiclass
        clus
vv       AMP PEAK 15(12Q15) MUTATED AMP PEAK 15(12Q15) WILD-TYPE
  CLUS_1                         25                           91
  CLUS_2                          8                           65
  CLUS_3                         17                           88
  CLUS_4                          9                           64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(12Q15) MUTATED       23     19     17
  AMP PEAK 15(12Q15) WILD-TYPE     82    146     80
D15V6, multiclass
        clus
vv       AMP PEAK 15(12Q15) MUTATED AMP PEAK 15(12Q15) WILD-TYPE
  CLUS_1                         23                           82
  CLUS_2                         19                          146
  CLUS_3                         17                           80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(12Q15) MUTATED       16     21     12     10
  AMP PEAK 15(12Q15) WILD-TYPE     81     82     85     44
D15V7, multiclass
        clus
vv       AMP PEAK 15(12Q15) MUTATED AMP PEAK 15(12Q15) WILD-TYPE
  CLUS_1                         16                           81
  CLUS_2                         21                           82
  CLUS_3                         12                           85
  CLUS_4                         10                           44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(12Q15) MUTATED       20     12     18      9
  AMP PEAK 15(12Q15) WILD-TYPE    112     81     70     29
D15V8, multiclass
        clus
vv       AMP PEAK 15(12Q15) MUTATED AMP PEAK 15(12Q15) WILD-TYPE
  CLUS_1                         20                          112
  CLUS_2                         12                           81
  CLUS_3                         18                           70
  CLUS_4                          9                           29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(12Q15) MUTATED       13     19     27
  AMP PEAK 15(12Q15) WILD-TYPE     72    100    106
D15V9, multiclass
        clus
vv       AMP PEAK 15(12Q15) MUTATED AMP PEAK 15(12Q15) WILD-TYPE
  CLUS_1                         13                           72
  CLUS_2                         19                          100
  CLUS_3                         27                          106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 15(12Q15) MUTATED        2      2     13     11     10      3     12
  AMP PEAK 15(12Q15) WILD-TYPE     34     22     38     52     28     14     52
                              vv
clus                           CLUS_8 CLUS_9
  AMP PEAK 15(12Q15) MUTATED        6      0
  AMP PEAK 15(12Q15) WILD-TYPE     23     15
D15V10, multiclass
        clus
vv       AMP PEAK 15(12Q15) MUTATED AMP PEAK 15(12Q15) WILD-TYPE
  CLUS_1                          2                           34
  CLUS_2                          2                           22
  CLUS_3                         13                           38
  CLUS_4                         11                           52
  CLUS_5                         10                           28
  CLUS_6                          3                           14
  CLUS_7                         12                           52
  CLUS_8                          6                           23
  CLUS_9                          0                           15
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(13Q31.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(13Q31.3) MUTATED       51     41     12
  AMP PEAK 16(13Q31.3) WILD-TYPE    103     69     91
D16V1, multiclass
        clus
vv       AMP PEAK 16(13Q31.3) MUTATED AMP PEAK 16(13Q31.3) WILD-TYPE
  CLUS_1                           51                            103
  CLUS_2                           41                             69
  CLUS_3                           12                             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(13Q31.3) MUTATED       29     18     11     45
  AMP PEAK 16(13Q31.3) WILD-TYPE     82    104     23     54
D16V2, multiclass
        clus
vv       AMP PEAK 16(13Q31.3) MUTATED AMP PEAK 16(13Q31.3) WILD-TYPE
  CLUS_1                           29                             82
  CLUS_2                           18                            104
  CLUS_3                           11                             23
  CLUS_4                           45                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(13Q31.3) MUTATED        5     22     14     19      6
  AMP PEAK 16(13Q31.3) WILD-TYPE     34     56     29     50     26
D16V3, multiclass
        clus
vv       AMP PEAK 16(13Q31.3) MUTATED AMP PEAK 16(13Q31.3) WILD-TYPE
  CLUS_1                            5                             34
  CLUS_2                           22                             56
  CLUS_3                           14                             29
  CLUS_4                           19                             50
  CLUS_5                            6                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(13Q31.3) MUTATED       28     18     20
  AMP PEAK 16(13Q31.3) WILD-TYPE     58     66     71
D16V4, multiclass
        clus
vv       AMP PEAK 16(13Q31.3) MUTATED AMP PEAK 16(13Q31.3) WILD-TYPE
  CLUS_1                           28                             58
  CLUS_2                           18                             66
  CLUS_3                           20                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(13Q31.3) MUTATED       24     11     36     33
  AMP PEAK 16(13Q31.3) WILD-TYPE     92     62     69     40
D16V5, multiclass
        clus
vv       AMP PEAK 16(13Q31.3) MUTATED AMP PEAK 16(13Q31.3) WILD-TYPE
  CLUS_1                           24                             92
  CLUS_2                           11                             62
  CLUS_3                           36                             69
  CLUS_4                           33                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(13Q31.3) MUTATED       36     34     34
  AMP PEAK 16(13Q31.3) WILD-TYPE     69    131     63
D16V6, multiclass
        clus
vv       AMP PEAK 16(13Q31.3) MUTATED AMP PEAK 16(13Q31.3) WILD-TYPE
  CLUS_1                           36                             69
  CLUS_2                           34                            131
  CLUS_3                           34                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(13Q31.3) MUTATED       23     29     30     16
  AMP PEAK 16(13Q31.3) WILD-TYPE     74     74     67     38
D16V7, multiclass
        clus
vv       AMP PEAK 16(13Q31.3) MUTATED AMP PEAK 16(13Q31.3) WILD-TYPE
  CLUS_1                           23                             74
  CLUS_2                           29                             74
  CLUS_3                           30                             67
  CLUS_4                           16                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(13Q31.3) MUTATED       42     25     23      8
  AMP PEAK 16(13Q31.3) WILD-TYPE     90     68     65     30
D16V8, multiclass
        clus
vv       AMP PEAK 16(13Q31.3) MUTATED AMP PEAK 16(13Q31.3) WILD-TYPE
  CLUS_1                           42                             90
  CLUS_2                           25                             68
  CLUS_3                           23                             65
  CLUS_4                            8                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(13Q31.3) MUTATED       17     37     42
  AMP PEAK 16(13Q31.3) WILD-TYPE     68     82     91
D16V9, multiclass
        clus
vv       AMP PEAK 16(13Q31.3) MUTATED AMP PEAK 16(13Q31.3) WILD-TYPE
  CLUS_1                           17                             68
  CLUS_2                           37                             82
  CLUS_3                           42                             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(13Q31.3) MUTATED        6      3      8     26     13      6
  AMP PEAK 16(13Q31.3) WILD-TYPE     30     21     43     37     25     11
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 16(13Q31.3) MUTATED       24      6      4
  AMP PEAK 16(13Q31.3) WILD-TYPE     40     23     11
D16V10, multiclass
        clus
vv       AMP PEAK 16(13Q31.3) MUTATED AMP PEAK 16(13Q31.3) WILD-TYPE
  CLUS_1                            6                             30
  CLUS_2                            3                             21
  CLUS_3                            8                             43
  CLUS_4                           26                             37
  CLUS_5                           13                             25
  CLUS_6                            6                             11
  CLUS_7                           24                             40
  CLUS_8                            6                             23
  CLUS_9                            4                             11
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(15Q26.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(15Q26.2) MUTATED       65     32     23
  AMP PEAK 17(15Q26.2) WILD-TYPE     89     78     80
D17V1, multiclass
        clus
vv       AMP PEAK 17(15Q26.2) MUTATED AMP PEAK 17(15Q26.2) WILD-TYPE
  CLUS_1                           65                             89
  CLUS_2                           32                             78
  CLUS_3                           23                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(15Q26.2) MUTATED       32     35     11     41
  AMP PEAK 17(15Q26.2) WILD-TYPE     79     87     23     58
D17V2, multiclass
        clus
vv       AMP PEAK 17(15Q26.2) MUTATED AMP PEAK 17(15Q26.2) WILD-TYPE
  CLUS_1                           32                             79
  CLUS_2                           35                             87
  CLUS_3                           11                             23
  CLUS_4                           41                             58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(15Q26.2) MUTATED       15     24     16     21      9
  AMP PEAK 17(15Q26.2) WILD-TYPE     24     54     27     48     23
D17V3, multiclass
        clus
vv       AMP PEAK 17(15Q26.2) MUTATED AMP PEAK 17(15Q26.2) WILD-TYPE
  CLUS_1                           15                             24
  CLUS_2                           24                             54
  CLUS_3                           16                             27
  CLUS_4                           21                             48
  CLUS_5                            9                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(15Q26.2) MUTATED       32     24     29
  AMP PEAK 17(15Q26.2) WILD-TYPE     54     60     62
D17V4, multiclass
        clus
vv       AMP PEAK 17(15Q26.2) MUTATED AMP PEAK 17(15Q26.2) WILD-TYPE
  CLUS_1                           32                             54
  CLUS_2                           24                             60
  CLUS_3                           29                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(15Q26.2) MUTATED       34     22     41     23
  AMP PEAK 17(15Q26.2) WILD-TYPE     82     51     64     50
D17V5, multiclass
        clus
vv       AMP PEAK 17(15Q26.2) MUTATED AMP PEAK 17(15Q26.2) WILD-TYPE
  CLUS_1                           34                             82
  CLUS_2                           22                             51
  CLUS_3                           41                             64
  CLUS_4                           23                             50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(15Q26.2) MUTATED       31     49     40
  AMP PEAK 17(15Q26.2) WILD-TYPE     74    116     57
D17V6, multiclass
        clus
vv       AMP PEAK 17(15Q26.2) MUTATED AMP PEAK 17(15Q26.2) WILD-TYPE
  CLUS_1                           31                             74
  CLUS_2                           49                            116
  CLUS_3                           40                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(15Q26.2) MUTATED       28     28     36     21
  AMP PEAK 17(15Q26.2) WILD-TYPE     69     75     61     33
D17V7, multiclass
        clus
vv       AMP PEAK 17(15Q26.2) MUTATED AMP PEAK 17(15Q26.2) WILD-TYPE
  CLUS_1                           28                             69
  CLUS_2                           28                             75
  CLUS_3                           36                             61
  CLUS_4                           21                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(15Q26.2) MUTATED       45     32     23     13
  AMP PEAK 17(15Q26.2) WILD-TYPE     87     61     65     25
D17V8, multiclass
        clus
vv       AMP PEAK 17(15Q26.2) MUTATED AMP PEAK 17(15Q26.2) WILD-TYPE
  CLUS_1                           45                             87
  CLUS_2                           32                             61
  CLUS_3                           23                             65
  CLUS_4                           13                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(15Q26.2) MUTATED       34     38     37
  AMP PEAK 17(15Q26.2) WILD-TYPE     51     81     96
D17V9, multiclass
        clus
vv       AMP PEAK 17(15Q26.2) MUTATED AMP PEAK 17(15Q26.2) WILD-TYPE
  CLUS_1                           34                             51
  CLUS_2                           38                             81
  CLUS_3                           37                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(15Q26.2) MUTATED       10      6     20     13     16      7
  AMP PEAK 17(15Q26.2) WILD-TYPE     26     18     31     50     22     10
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 17(15Q26.2) MUTATED       22     10      5
  AMP PEAK 17(15Q26.2) WILD-TYPE     42     19     10
D17V10, multiclass
        clus
vv       AMP PEAK 17(15Q26.2) MUTATED AMP PEAK 17(15Q26.2) WILD-TYPE
  CLUS_1                           10                             26
  CLUS_2                            6                             18
  CLUS_3                           20                             31
  CLUS_4                           13                             50
  CLUS_5                           16                             22
  CLUS_6                            7                             10
  CLUS_7                           22                             42
  CLUS_8                           10                             19
  CLUS_9                            5                             10
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(17Q25.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(17Q25.3) MUTATED       67     33     22
  AMP PEAK 18(17Q25.3) WILD-TYPE     87     77     81
D18V1, multiclass
        clus
vv       AMP PEAK 18(17Q25.3) MUTATED AMP PEAK 18(17Q25.3) WILD-TYPE
  CLUS_1                           67                             87
  CLUS_2                           33                             77
  CLUS_3                           22                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(17Q25.3) MUTATED       40     30     14     38
  AMP PEAK 18(17Q25.3) WILD-TYPE     71     92     20     61
D18V2, multiclass
        clus
vv       AMP PEAK 18(17Q25.3) MUTATED AMP PEAK 18(17Q25.3) WILD-TYPE
  CLUS_1                           40                             71
  CLUS_2                           30                             92
  CLUS_3                           14                             20
  CLUS_4                           38                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(17Q25.3) MUTATED        9     33     13     22     14
  AMP PEAK 18(17Q25.3) WILD-TYPE     30     45     30     47     18
D18V3, multiclass
        clus
vv       AMP PEAK 18(17Q25.3) MUTATED AMP PEAK 18(17Q25.3) WILD-TYPE
  CLUS_1                            9                             30
  CLUS_2                           33                             45
  CLUS_3                           13                             30
  CLUS_4                           22                             47
  CLUS_5                           14                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(17Q25.3) MUTATED       25     30     36
  AMP PEAK 18(17Q25.3) WILD-TYPE     61     54     55
D18V4, multiclass
        clus
vv       AMP PEAK 18(17Q25.3) MUTATED AMP PEAK 18(17Q25.3) WILD-TYPE
  CLUS_1                           25                             61
  CLUS_2                           30                             54
  CLUS_3                           36                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(17Q25.3) MUTATED       40     23     32     27
  AMP PEAK 18(17Q25.3) WILD-TYPE     76     50     73     46
D18V5, multiclass
        clus
vv       AMP PEAK 18(17Q25.3) MUTATED AMP PEAK 18(17Q25.3) WILD-TYPE
  CLUS_1                           40                             76
  CLUS_2                           23                             50
  CLUS_3                           32                             73
  CLUS_4                           27                             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(17Q25.3) MUTATED       32     66     24
  AMP PEAK 18(17Q25.3) WILD-TYPE     73     99     73
D18V6, multiclass
        clus
vv       AMP PEAK 18(17Q25.3) MUTATED AMP PEAK 18(17Q25.3) WILD-TYPE
  CLUS_1                           32                             73
  CLUS_2                           66                             99
  CLUS_3                           24                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(17Q25.3) MUTATED       31     36     29     24
  AMP PEAK 18(17Q25.3) WILD-TYPE     66     67     68     30
D18V7, multiclass
        clus
vv       AMP PEAK 18(17Q25.3) MUTATED AMP PEAK 18(17Q25.3) WILD-TYPE
  CLUS_1                           31                             66
  CLUS_2                           36                             67
  CLUS_3                           29                             68
  CLUS_4                           24                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(17Q25.3) MUTATED       53     22     32     13
  AMP PEAK 18(17Q25.3) WILD-TYPE     79     71     56     25
D18V8, multiclass
        clus
vv       AMP PEAK 18(17Q25.3) MUTATED AMP PEAK 18(17Q25.3) WILD-TYPE
  CLUS_1                           53                             79
  CLUS_2                           22                             71
  CLUS_3                           32                             56
  CLUS_4                           13                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(17Q25.3) MUTATED       29     37     51
  AMP PEAK 18(17Q25.3) WILD-TYPE     56     82     82
D18V9, multiclass
        clus
vv       AMP PEAK 18(17Q25.3) MUTATED AMP PEAK 18(17Q25.3) WILD-TYPE
  CLUS_1                           29                             56
  CLUS_2                           37                             82
  CLUS_3                           51                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(17Q25.3) MUTATED       10     10     24     22     13      2
  AMP PEAK 18(17Q25.3) WILD-TYPE     26     14     27     41     25     15
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 18(17Q25.3) MUTATED       17     10      9
  AMP PEAK 18(17Q25.3) WILD-TYPE     47     19      6
D18V10, multiclass
        clus
vv       AMP PEAK 18(17Q25.3) MUTATED AMP PEAK 18(17Q25.3) WILD-TYPE
  CLUS_1                           10                             26
  CLUS_2                           10                             14
  CLUS_3                           24                             27
  CLUS_4                           22                             41
  CLUS_5                           13                             25
  CLUS_6                            2                             15
  CLUS_7                           17                             47
  CLUS_8                           10                             19
  CLUS_9                            9                              6
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(20Q13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(20Q13.33) MUTATED      100     60     28
  AMP PEAK 19(20Q13.33) WILD-TYPE     54     50     75
D19V1, multiclass
        clus
vv       AMP PEAK 19(20Q13.33) MUTATED AMP PEAK 19(20Q13.33) WILD-TYPE
  CLUS_1                           100                              54
  CLUS_2                            60                              50
  CLUS_3                            28                              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(20Q13.33) MUTATED       53     52     21     61
  AMP PEAK 19(20Q13.33) WILD-TYPE     58     70     13     38
D19V2, multiclass
        clus
vv       AMP PEAK 19(20Q13.33) MUTATED AMP PEAK 19(20Q13.33) WILD-TYPE
  CLUS_1                            53                              58
  CLUS_2                            52                              70
  CLUS_3                            21                              13
  CLUS_4                            61                              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(20Q13.33) MUTATED       13     33     24     44     15
  AMP PEAK 19(20Q13.33) WILD-TYPE     26     45     19     25     17
D19V3, multiclass
        clus
vv       AMP PEAK 19(20Q13.33) MUTATED AMP PEAK 19(20Q13.33) WILD-TYPE
  CLUS_1                            13                              26
  CLUS_2                            33                              45
  CLUS_3                            24                              19
  CLUS_4                            44                              25
  CLUS_5                            15                              17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(20Q13.33) MUTATED       49     34     46
  AMP PEAK 19(20Q13.33) WILD-TYPE     37     50     45
D19V4, multiclass
        clus
vv       AMP PEAK 19(20Q13.33) MUTATED AMP PEAK 19(20Q13.33) WILD-TYPE
  CLUS_1                            49                              37
  CLUS_2                            34                              50
  CLUS_3                            46                              45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(20Q13.33) MUTATED       55     31     62     40
  AMP PEAK 19(20Q13.33) WILD-TYPE     61     42     43     33
D19V5, multiclass
        clus
vv       AMP PEAK 19(20Q13.33) MUTATED AMP PEAK 19(20Q13.33) WILD-TYPE
  CLUS_1                            55                              61
  CLUS_2                            31                              42
  CLUS_3                            62                              43
  CLUS_4                            40                              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(20Q13.33) MUTATED       55     74     59
  AMP PEAK 19(20Q13.33) WILD-TYPE     50     91     38
D19V6, multiclass
        clus
vv       AMP PEAK 19(20Q13.33) MUTATED AMP PEAK 19(20Q13.33) WILD-TYPE
  CLUS_1                            55                              50
  CLUS_2                            74                              91
  CLUS_3                            59                              38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(20Q13.33) MUTATED       54     44     49     30
  AMP PEAK 19(20Q13.33) WILD-TYPE     43     59     48     24
D19V7, multiclass
        clus
vv       AMP PEAK 19(20Q13.33) MUTATED AMP PEAK 19(20Q13.33) WILD-TYPE
  CLUS_1                            54                              43
  CLUS_2                            44                              59
  CLUS_3                            49                              48
  CLUS_4                            30                              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(20Q13.33) MUTATED       68     46     41     22
  AMP PEAK 19(20Q13.33) WILD-TYPE     64     47     47     16
D19V8, multiclass
        clus
vv       AMP PEAK 19(20Q13.33) MUTATED AMP PEAK 19(20Q13.33) WILD-TYPE
  CLUS_1                            68                              64
  CLUS_2                            46                              47
  CLUS_3                            41                              47
  CLUS_4                            22                              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(20Q13.33) MUTATED       43     62     63
  AMP PEAK 19(20Q13.33) WILD-TYPE     42     57     70
D19V9, multiclass
        clus
vv       AMP PEAK 19(20Q13.33) MUTATED AMP PEAK 19(20Q13.33) WILD-TYPE
  CLUS_1                            43                              42
  CLUS_2                            62                              57
  CLUS_3                            63                              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(20Q13.33) MUTATED       13      9     26     30     21     12
  AMP PEAK 19(20Q13.33) WILD-TYPE     23     15     25     33     17      5
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 19(20Q13.33) MUTATED       33     18      6
  AMP PEAK 19(20Q13.33) WILD-TYPE     31     11      9
D19V10, multiclass
        clus
vv       AMP PEAK 19(20Q13.33) MUTATED AMP PEAK 19(20Q13.33) WILD-TYPE
  CLUS_1                            13                              23
  CLUS_2                             9                              15
  CLUS_3                            26                              25
  CLUS_4                            30                              33
  CLUS_5                            21                              17
  CLUS_6                            12                               5
  CLUS_7                            33                              31
  CLUS_8                            18                              11
  CLUS_9                             6                               9
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(22Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(22Q13.2) MUTATED       72     52     28
  AMP PEAK 20(22Q13.2) WILD-TYPE     82     58     75
D20V1, multiclass
        clus
vv       AMP PEAK 20(22Q13.2) MUTATED AMP PEAK 20(22Q13.2) WILD-TYPE
  CLUS_1                           72                             82
  CLUS_2                           52                             58
  CLUS_3                           28                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(22Q13.2) MUTATED       45     40     15     51
  AMP PEAK 20(22Q13.2) WILD-TYPE     66     82     19     48
D20V2, multiclass
        clus
vv       AMP PEAK 20(22Q13.2) MUTATED AMP PEAK 20(22Q13.2) WILD-TYPE
  CLUS_1                           45                             66
  CLUS_2                           40                             82
  CLUS_3                           15                             19
  CLUS_4                           51                             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(22Q13.2) MUTATED       11     30     16     35     13
  AMP PEAK 20(22Q13.2) WILD-TYPE     28     48     27     34     19
D20V3, multiclass
        clus
vv       AMP PEAK 20(22Q13.2) MUTATED AMP PEAK 20(22Q13.2) WILD-TYPE
  CLUS_1                           11                             28
  CLUS_2                           30                             48
  CLUS_3                           16                             27
  CLUS_4                           35                             34
  CLUS_5                           13                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(22Q13.2) MUTATED       40     29     36
  AMP PEAK 20(22Q13.2) WILD-TYPE     46     55     55
D20V4, multiclass
        clus
vv       AMP PEAK 20(22Q13.2) MUTATED AMP PEAK 20(22Q13.2) WILD-TYPE
  CLUS_1                           40                             46
  CLUS_2                           29                             55
  CLUS_3                           36                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(22Q13.2) MUTATED       52     23     46     31
  AMP PEAK 20(22Q13.2) WILD-TYPE     64     50     59     42
D20V5, multiclass
        clus
vv       AMP PEAK 20(22Q13.2) MUTATED AMP PEAK 20(22Q13.2) WILD-TYPE
  CLUS_1                           52                             64
  CLUS_2                           23                             50
  CLUS_3                           46                             59
  CLUS_4                           31                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(22Q13.2) MUTATED       48     64     40
  AMP PEAK 20(22Q13.2) WILD-TYPE     57    101     57
D20V6, multiclass
        clus
vv       AMP PEAK 20(22Q13.2) MUTATED AMP PEAK 20(22Q13.2) WILD-TYPE
  CLUS_1                           48                             57
  CLUS_2                           64                            101
  CLUS_3                           40                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(22Q13.2) MUTATED       42     44     34     26
  AMP PEAK 20(22Q13.2) WILD-TYPE     55     59     63     28
D20V7, multiclass
        clus
vv       AMP PEAK 20(22Q13.2) MUTATED AMP PEAK 20(22Q13.2) WILD-TYPE
  CLUS_1                           42                             55
  CLUS_2                           44                             59
  CLUS_3                           34                             63
  CLUS_4                           26                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(22Q13.2) MUTATED       54     30     44     18
  AMP PEAK 20(22Q13.2) WILD-TYPE     78     63     44     20
D20V8, multiclass
        clus
vv       AMP PEAK 20(22Q13.2) MUTATED AMP PEAK 20(22Q13.2) WILD-TYPE
  CLUS_1                           54                             78
  CLUS_2                           30                             63
  CLUS_3                           44                             44
  CLUS_4                           18                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(22Q13.2) MUTATED       31     49     58
  AMP PEAK 20(22Q13.2) WILD-TYPE     54     70     75
D20V9, multiclass
        clus
vv       AMP PEAK 20(22Q13.2) MUTATED AMP PEAK 20(22Q13.2) WILD-TYPE
  CLUS_1                           31                             54
  CLUS_2                           49                             70
  CLUS_3                           58                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(22Q13.2) MUTATED        7      7     30     24     14      5
  AMP PEAK 20(22Q13.2) WILD-TYPE     29     17     21     39     24     12
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 20(22Q13.2) MUTATED       31     15      5
  AMP PEAK 20(22Q13.2) WILD-TYPE     33     14     10
D20V10, multiclass
        clus
vv       AMP PEAK 20(22Q13.2) MUTATED AMP PEAK 20(22Q13.2) WILD-TYPE
  CLUS_1                            7                             29
  CLUS_2                            7                             17
  CLUS_3                           30                             21
  CLUS_4                           24                             39
  CLUS_5                           14                             24
  CLUS_6                            5                             12
  CLUS_7                           31                             33
  CLUS_8                           15                             14
  CLUS_9                            5                             10
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = DEL PEAK  1(1P36.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       43     26     12
  DEL PEAK  1(1P36.31) WILD-TYPE    111     84     91
D21V1, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           43                            111
  CLUS_2                           26                             84
  CLUS_3                           12                             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED       21     18     13     29
  DEL PEAK  1(1P36.31) WILD-TYPE     90    104     21     70
D21V2, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           21                             90
  CLUS_2                           18                            104
  CLUS_3                           13                             21
  CLUS_4                           29                             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.31) MUTATED        3     20      7     20      6
  DEL PEAK  1(1P36.31) WILD-TYPE     36     58     36     49     26
D21V3, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            3                             36
  CLUS_2                           20                             58
  CLUS_3                            7                             36
  CLUS_4                           20                             49
  CLUS_5                            6                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       19     16     21
  DEL PEAK  1(1P36.31) WILD-TYPE     67     68     70
D21V4, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           19                             67
  CLUS_2                           16                             68
  CLUS_3                           21                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED       24     10     25     22
  DEL PEAK  1(1P36.31) WILD-TYPE     92     63     80     51
D21V5, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           24                             92
  CLUS_2                           10                             63
  CLUS_3                           25                             80
  CLUS_4                           22                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       30     26     25
  DEL PEAK  1(1P36.31) WILD-TYPE     75    139     72
D21V6, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           30                             75
  CLUS_2                           26                            139
  CLUS_3                           25                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED       13     23     23     20
  DEL PEAK  1(1P36.31) WILD-TYPE     84     80     74     34
D21V7, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           13                             84
  CLUS_2                           23                             80
  CLUS_3                           23                             74
  CLUS_4                           20                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED       31     14     22     12
  DEL PEAK  1(1P36.31) WILD-TYPE    101     79     66     26
D21V8, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           31                            101
  CLUS_2                           14                             79
  CLUS_3                           22                             66
  CLUS_4                           12                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       14     33     30
  DEL PEAK  1(1P36.31) WILD-TYPE     71     86    103
D21V9, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           14                             71
  CLUS_2                           33                             86
  CLUS_3                           30                            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.31) MUTATED        4      3      9     18      8      3
  DEL PEAK  1(1P36.31) WILD-TYPE     32     21     42     45     30     14
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  1(1P36.31) MUTATED       19      8      5
  DEL PEAK  1(1P36.31) WILD-TYPE     45     21     10
D21V10, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            4                             32
  CLUS_2                            3                             21
  CLUS_3                            9                             42
  CLUS_4                           18                             45
  CLUS_5                            8                             30
  CLUS_6                            3                             14
  CLUS_7                           19                             45
  CLUS_8                            8                             21
  CLUS_9                            5                             10
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = DEL PEAK  2(1P22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P22.1) MUTATED       48     37     12
  DEL PEAK  2(1P22.1) WILD-TYPE    106     73     91
D22V1, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          48                           106
  CLUS_2                          37                            73
  CLUS_3                          12                            91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P22.1) MUTATED       20     29     16     32
  DEL PEAK  2(1P22.1) WILD-TYPE     91     93     18     67
D22V2, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          20                            91
  CLUS_2                          29                            93
  CLUS_3                          16                            18
  CLUS_4                          32                            67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P22.1) MUTATED        6     22     13     18     12
  DEL PEAK  2(1P22.1) WILD-TYPE     33     56     30     51     20
D22V3, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                           6                            33
  CLUS_2                          22                            56
  CLUS_3                          13                            30
  CLUS_4                          18                            51
  CLUS_5                          12                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P22.1) MUTATED       18     20     33
  DEL PEAK  2(1P22.1) WILD-TYPE     68     64     58
D22V4, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          18                            68
  CLUS_2                          20                            64
  CLUS_3                          33                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P22.1) MUTATED       30     10     36     21
  DEL PEAK  2(1P22.1) WILD-TYPE     86     63     69     52
D22V5, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          30                            86
  CLUS_2                          10                            63
  CLUS_3                          36                            69
  CLUS_4                          21                            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P22.1) MUTATED       27     33     37
  DEL PEAK  2(1P22.1) WILD-TYPE     78    132     60
D22V6, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          27                            78
  CLUS_2                          33                           132
  CLUS_3                          37                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P22.1) MUTATED       18     28     32     17
  DEL PEAK  2(1P22.1) WILD-TYPE     79     75     65     37
D22V7, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          18                            79
  CLUS_2                          28                            75
  CLUS_3                          32                            65
  CLUS_4                          17                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P22.1) MUTATED       31     26     26     12
  DEL PEAK  2(1P22.1) WILD-TYPE    101     67     62     26
D22V8, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          31                           101
  CLUS_2                          26                            67
  CLUS_3                          26                            62
  CLUS_4                          12                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P22.1) MUTATED       16     41     35
  DEL PEAK  2(1P22.1) WILD-TYPE     69     78     98
D22V9, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          16                            69
  CLUS_2                          41                            78
  CLUS_3                          35                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P22.1) MUTATED        7      5     13     14     13      6
  DEL PEAK  2(1P22.1) WILD-TYPE     29     19     38     49     25     11
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  2(1P22.1) MUTATED       22      8      4
  DEL PEAK  2(1P22.1) WILD-TYPE     42     21     11
D22V10, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                           7                            29
  CLUS_2                           5                            19
  CLUS_3                          13                            38
  CLUS_4                          14                            49
  CLUS_5                          13                            25
  CLUS_6                           6                            11
  CLUS_7                          22                            42
  CLUS_8                           8                            21
  CLUS_9                           4                            11
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = DEL PEAK  3(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q37.3) MUTATED       51     21     21
  DEL PEAK  3(2Q37.3) WILD-TYPE    103     89     82
D23V1, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          51                           103
  CLUS_2                          21                            89
  CLUS_3                          21                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q37.3) MUTATED       38     21     12     22
  DEL PEAK  3(2Q37.3) WILD-TYPE     73    101     22     77
D23V2, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          38                            73
  CLUS_2                          21                           101
  CLUS_3                          12                            22
  CLUS_4                          22                            77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q37.3) MUTATED        7     17      9     24     11
  DEL PEAK  3(2Q37.3) WILD-TYPE     32     61     34     45     21
D23V3, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                           7                            32
  CLUS_2                          17                            61
  CLUS_3                           9                            34
  CLUS_4                          24                            45
  CLUS_5                          11                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q37.3) MUTATED       19     16     33
  DEL PEAK  3(2Q37.3) WILD-TYPE     67     68     58
D23V4, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          19                            67
  CLUS_2                          16                            68
  CLUS_3                          33                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q37.3) MUTATED       39     15     19     20
  DEL PEAK  3(2Q37.3) WILD-TYPE     77     58     86     53
D23V5, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          39                            77
  CLUS_2                          15                            58
  CLUS_3                          19                            86
  CLUS_4                          20                            53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q37.3) MUTATED       38     41     14
  DEL PEAK  3(2Q37.3) WILD-TYPE     67    124     83
D23V6, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          38                            67
  CLUS_2                          41                           124
  CLUS_3                          14                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q37.3) MUTATED       19     37     18     17
  DEL PEAK  3(2Q37.3) WILD-TYPE     78     66     79     37
D23V7, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          19                            78
  CLUS_2                          37                            66
  CLUS_3                          18                            79
  CLUS_4                          17                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q37.3) MUTATED       44     15     23      9
  DEL PEAK  3(2Q37.3) WILD-TYPE     88     78     65     29
D23V8, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          44                            88
  CLUS_2                          15                            78
  CLUS_3                          23                            65
  CLUS_4                           9                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q37.3) MUTATED       20     26     41
  DEL PEAK  3(2Q37.3) WILD-TYPE     65     93     92
D23V9, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          20                            65
  CLUS_2                          26                            93
  CLUS_3                          41                            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q37.3) MUTATED       10      7     11     20      8      2
  DEL PEAK  3(2Q37.3) WILD-TYPE     26     17     40     43     30     15
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  3(2Q37.3) MUTATED       19      5      5
  DEL PEAK  3(2Q37.3) WILD-TYPE     45     24     10
D23V10, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          10                            26
  CLUS_2                           7                            17
  CLUS_3                          11                            40
  CLUS_4                          20                            43
  CLUS_5                           8                            30
  CLUS_6                           2                            15
  CLUS_7                          19                            45
  CLUS_8                           5                            24
  CLUS_9                           5                            10
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = DEL PEAK  4(3P25.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P25.1) MUTATED       24     30     17
  DEL PEAK  4(3P25.1) WILD-TYPE    130     80     86
D24V1, multiclass
        clus
vv       DEL PEAK  4(3P25.1) MUTATED DEL PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          24                           130
  CLUS_2                          30                            80
  CLUS_3                          17                            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P25.1) MUTATED       16     26      8     21
  DEL PEAK  4(3P25.1) WILD-TYPE     95     96     26     78
D24V2, multiclass
        clus
vv       DEL PEAK  4(3P25.1) MUTATED DEL PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          16                            95
  CLUS_2                          26                            96
  CLUS_3                           8                            26
  CLUS_4                          21                            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(3P25.1) MUTATED        8     13     10     12     10
  DEL PEAK  4(3P25.1) WILD-TYPE     31     65     33     57     22
D24V3, multiclass
        clus
vv       DEL PEAK  4(3P25.1) MUTATED DEL PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                           8                            31
  CLUS_2                          13                            65
  CLUS_3                          10                            33
  CLUS_4                          12                            57
  CLUS_5                          10                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P25.1) MUTATED       13     20     20
  DEL PEAK  4(3P25.1) WILD-TYPE     73     64     71
D24V4, multiclass
        clus
vv       DEL PEAK  4(3P25.1) MUTATED DEL PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          13                            73
  CLUS_2                          20                            64
  CLUS_3                          20                            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P25.1) MUTATED       19     14     21     17
  DEL PEAK  4(3P25.1) WILD-TYPE     97     59     84     56
D24V5, multiclass
        clus
vv       DEL PEAK  4(3P25.1) MUTATED DEL PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          19                            97
  CLUS_2                          14                            59
  CLUS_3                          21                            84
  CLUS_4                          17                            56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P25.1) MUTATED       18     33     20
  DEL PEAK  4(3P25.1) WILD-TYPE     87    132     77
D24V6, multiclass
        clus
vv       DEL PEAK  4(3P25.1) MUTATED DEL PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          18                            87
  CLUS_2                          33                           132
  CLUS_3                          20                            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P25.1) MUTATED       17     18     25      6
  DEL PEAK  4(3P25.1) WILD-TYPE     80     85     72     48
D24V7, multiclass
        clus
vv       DEL PEAK  4(3P25.1) MUTATED DEL PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          17                            80
  CLUS_2                          18                            85
  CLUS_3                          25                            72
  CLUS_4                           6                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P25.1) MUTATED       24     16     22      4
  DEL PEAK  4(3P25.1) WILD-TYPE    108     77     66     34
D24V8, multiclass
        clus
vv       DEL PEAK  4(3P25.1) MUTATED DEL PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          24                           108
  CLUS_2                          16                            77
  CLUS_3                          22                            66
  CLUS_4                           4                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P25.1) MUTATED       20     26     20
  DEL PEAK  4(3P25.1) WILD-TYPE     65     93    113
D24V9, multiclass
        clus
vv       DEL PEAK  4(3P25.1) MUTATED DEL PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          20                            65
  CLUS_2                          26                            93
  CLUS_3                          20                           113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(3P25.1) MUTATED        4      5     11     11     11      3
  DEL PEAK  4(3P25.1) WILD-TYPE     32     19     40     52     27     14
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  4(3P25.1) MUTATED       15      3      3
  DEL PEAK  4(3P25.1) WILD-TYPE     49     26     12
D24V10, multiclass
        clus
vv       DEL PEAK  4(3P25.1) MUTATED DEL PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                           4                            32
  CLUS_2                           5                            19
  CLUS_3                          11                            40
  CLUS_4                          11                            52
  CLUS_5                          11                            27
  CLUS_6                           3                            14
  CLUS_7                          15                            49
  CLUS_8                           3                            26
  CLUS_9                           3                            12
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = DEL PEAK  5(3Q13.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3Q13.31) MUTATED       31     20     11
  DEL PEAK  5(3Q13.31) WILD-TYPE    123     90     92
D25V1, multiclass
        clus
vv       DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE
  CLUS_1                           31                            123
  CLUS_2                           20                             90
  CLUS_3                           11                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3Q13.31) MUTATED       25     15      9     13
  DEL PEAK  5(3Q13.31) WILD-TYPE     86    107     25     86
D25V2, multiclass
        clus
vv       DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE
  CLUS_1                           25                             86
  CLUS_2                           15                            107
  CLUS_3                            9                             25
  CLUS_4                           13                             86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3Q13.31) MUTATED        3     11     12     12      5
  DEL PEAK  5(3Q13.31) WILD-TYPE     36     67     31     57     27
D25V3, multiclass
        clus
vv       DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE
  CLUS_1                            3                             36
  CLUS_2                           11                             67
  CLUS_3                           12                             31
  CLUS_4                           12                             57
  CLUS_5                            5                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3Q13.31) MUTATED        8     15     20
  DEL PEAK  5(3Q13.31) WILD-TYPE     78     69     71
D25V4, multiclass
        clus
vv       DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE
  CLUS_1                            8                             78
  CLUS_2                           15                             69
  CLUS_3                           20                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3Q13.31) MUTATED       24      6     14     18
  DEL PEAK  5(3Q13.31) WILD-TYPE     92     67     91     55
D25V5, multiclass
        clus
vv       DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE
  CLUS_1                           24                             92
  CLUS_2                            6                             67
  CLUS_3                           14                             91
  CLUS_4                           18                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3Q13.31) MUTATED       23     25     14
  DEL PEAK  5(3Q13.31) WILD-TYPE     82    140     83
D25V6, multiclass
        clus
vv       DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE
  CLUS_1                           23                             82
  CLUS_2                           25                            140
  CLUS_3                           14                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3Q13.31) MUTATED       14     25     17      4
  DEL PEAK  5(3Q13.31) WILD-TYPE     83     78     80     50
D25V7, multiclass
        clus
vv       DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE
  CLUS_1                           14                             83
  CLUS_2                           25                             78
  CLUS_3                           17                             80
  CLUS_4                            4                             50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3Q13.31) MUTATED       31     10     15      4
  DEL PEAK  5(3Q13.31) WILD-TYPE    101     83     73     34
D25V8, multiclass
        clus
vv       DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE
  CLUS_1                           31                            101
  CLUS_2                           10                             83
  CLUS_3                           15                             73
  CLUS_4                            4                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3Q13.31) MUTATED       10     20     29
  DEL PEAK  5(3Q13.31) WILD-TYPE     75     99    104
D25V9, multiclass
        clus
vv       DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE
  CLUS_1                           10                             75
  CLUS_2                           20                             99
  CLUS_3                           29                            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3Q13.31) MUTATED        4      5      7     15      8      3
  DEL PEAK  5(3Q13.31) WILD-TYPE     32     19     44     48     30     14
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  5(3Q13.31) MUTATED       13      2      2
  DEL PEAK  5(3Q13.31) WILD-TYPE     51     27     13
D25V10, multiclass
        clus
vv       DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE
  CLUS_1                            4                             32
  CLUS_2                            5                             19
  CLUS_3                            7                             44
  CLUS_4                           15                             48
  CLUS_5                            8                             30
  CLUS_6                            3                             14
  CLUS_7                           13                             51
  CLUS_8                            2                             27
  CLUS_9                            2                             13
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK  6(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4P16.3) MUTATED       42     27     22
  DEL PEAK  6(4P16.3) WILD-TYPE    112     83     81
D26V1, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          42                           112
  CLUS_2                          27                            83
  CLUS_3                          22                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4P16.3) MUTATED       33     24     13     21
  DEL PEAK  6(4P16.3) WILD-TYPE     78     98     21     78
D26V2, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          33                            78
  CLUS_2                          24                            98
  CLUS_3                          13                            21
  CLUS_4                          21                            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4P16.3) MUTATED        7     20     13     21      5
  DEL PEAK  6(4P16.3) WILD-TYPE     32     58     30     48     27
D26V3, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                           7                            32
  CLUS_2                          20                            58
  CLUS_3                          13                            30
  CLUS_4                          21                            48
  CLUS_5                           5                            27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4P16.3) MUTATED       24     19     23
  DEL PEAK  6(4P16.3) WILD-TYPE     62     65     68
D26V4, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          24                            62
  CLUS_2                          19                            65
  CLUS_3                          23                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4P16.3) MUTATED       32     15     29     15
  DEL PEAK  6(4P16.3) WILD-TYPE     84     58     76     58
D26V5, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          32                            84
  CLUS_2                          15                            58
  CLUS_3                          29                            76
  CLUS_4                          15                            58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4P16.3) MUTATED       30     31     30
  DEL PEAK  6(4P16.3) WILD-TYPE     75    134     67
D26V6, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          30                            75
  CLUS_2                          31                           134
  CLUS_3                          30                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4P16.3) MUTATED       24     26     23     12
  DEL PEAK  6(4P16.3) WILD-TYPE     73     77     74     42
D26V7, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          24                            73
  CLUS_2                          26                            77
  CLUS_3                          23                            74
  CLUS_4                          12                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4P16.3) MUTATED       24     27     24     10
  DEL PEAK  6(4P16.3) WILD-TYPE    108     66     64     28
D26V8, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          24                           108
  CLUS_2                          27                            66
  CLUS_3                          24                            64
  CLUS_4                          10                            28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4P16.3) MUTATED       18     28     37
  DEL PEAK  6(4P16.3) WILD-TYPE     67     91     96
D26V9, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          18                            67
  CLUS_2                          28                            91
  CLUS_3                          37                            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4P16.3) MUTATED        9      6     12     19     11      3
  DEL PEAK  6(4P16.3) WILD-TYPE     27     18     39     44     27     14
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  6(4P16.3) MUTATED       14      7      2
  DEL PEAK  6(4P16.3) WILD-TYPE     50     22     13
D26V10, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                           9                            27
  CLUS_2                           6                            18
  CLUS_3                          12                            39
  CLUS_4                          19                            44
  CLUS_5                          11                            27
  CLUS_6                           3                            14
  CLUS_7                          14                            50
  CLUS_8                           7                            22
  CLUS_9                           2                            13
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK  7(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q34.3) MUTATED       59     30     21
  DEL PEAK  7(4Q34.3) WILD-TYPE     95     80     82
D27V1, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          59                            95
  CLUS_2                          30                            80
  CLUS_3                          21                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q34.3) MUTATED       28     35     12     35
  DEL PEAK  7(4Q34.3) WILD-TYPE     83     87     22     64
D27V2, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          28                            83
  CLUS_2                          35                            87
  CLUS_3                          12                            22
  CLUS_4                          35                            64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4Q34.3) MUTATED       14     26     10     21      9
  DEL PEAK  7(4Q34.3) WILD-TYPE     25     52     33     48     23
D27V3, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          14                            25
  CLUS_2                          26                            52
  CLUS_3                          10                            33
  CLUS_4                          21                            48
  CLUS_5                           9                            23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q34.3) MUTATED       27     23     30
  DEL PEAK  7(4Q34.3) WILD-TYPE     59     61     61
D27V4, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          27                            59
  CLUS_2                          23                            61
  CLUS_3                          30                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q34.3) MUTATED       32     16     43     19
  DEL PEAK  7(4Q34.3) WILD-TYPE     84     57     62     54
D27V5, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          32                            84
  CLUS_2                          16                            57
  CLUS_3                          43                            62
  CLUS_4                          19                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q34.3) MUTATED       27     41     42
  DEL PEAK  7(4Q34.3) WILD-TYPE     78    124     55
D27V6, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          27                            78
  CLUS_2                          41                           124
  CLUS_3                          42                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q34.3) MUTATED       32     26     32     17
  DEL PEAK  7(4Q34.3) WILD-TYPE     65     77     65     37
D27V7, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          32                            65
  CLUS_2                          26                            77
  CLUS_3                          32                            65
  CLUS_4                          17                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q34.3) MUTATED       26     38     28     15
  DEL PEAK  7(4Q34.3) WILD-TYPE    106     55     60     23
D27V8, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          26                           106
  CLUS_2                          38                            55
  CLUS_3                          28                            60
  CLUS_4                          15                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q34.3) MUTATED       24     44     35
  DEL PEAK  7(4Q34.3) WILD-TYPE     61     75     98
D27V9, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          24                            61
  CLUS_2                          44                            75
  CLUS_3                          35                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(4Q34.3) MUTATED        9      5     17     14     20      8
  DEL PEAK  7(4Q34.3) WILD-TYPE     27     19     34     49     18      9
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  7(4Q34.3) MUTATED       17     10      3
  DEL PEAK  7(4Q34.3) WILD-TYPE     47     19     12
D27V10, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                           9                            27
  CLUS_2                           5                            19
  CLUS_3                          17                            34
  CLUS_4                          14                            49
  CLUS_5                          20                            18
  CLUS_6                           8                             9
  CLUS_7                          17                            47
  CLUS_8                          10                            19
  CLUS_9                           3                            12
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK  8(5P15.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P15.31) MUTATED       16     49     14
  DEL PEAK  8(5P15.31) WILD-TYPE    138     61     89
D28V1, multiclass
        clus
vv       DEL PEAK  8(5P15.31) MUTATED DEL PEAK  8(5P15.31) WILD-TYPE
  CLUS_1                           16                            138
  CLUS_2                           49                             61
  CLUS_3                           14                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5P15.31) MUTATED       28     22      8     21
  DEL PEAK  8(5P15.31) WILD-TYPE     83    100     26     78
D28V2, multiclass
        clus
vv       DEL PEAK  8(5P15.31) MUTATED DEL PEAK  8(5P15.31) WILD-TYPE
  CLUS_1                           28                             83
  CLUS_2                           22                            100
  CLUS_3                            8                             26
  CLUS_4                           21                             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(5P15.31) MUTATED        4     15      8     15     12
  DEL PEAK  8(5P15.31) WILD-TYPE     35     63     35     54     20
D28V3, multiclass
        clus
vv       DEL PEAK  8(5P15.31) MUTATED DEL PEAK  8(5P15.31) WILD-TYPE
  CLUS_1                            4                             35
  CLUS_2                           15                             63
  CLUS_3                            8                             35
  CLUS_4                           15                             54
  CLUS_5                           12                             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P15.31) MUTATED       17     16     21
  DEL PEAK  8(5P15.31) WILD-TYPE     69     68     70
D28V4, multiclass
        clus
vv       DEL PEAK  8(5P15.31) MUTATED DEL PEAK  8(5P15.31) WILD-TYPE
  CLUS_1                           17                             69
  CLUS_2                           16                             68
  CLUS_3                           21                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5P15.31) MUTATED       31     14     19     15
  DEL PEAK  8(5P15.31) WILD-TYPE     85     59     86     58
D28V5, multiclass
        clus
vv       DEL PEAK  8(5P15.31) MUTATED DEL PEAK  8(5P15.31) WILD-TYPE
  CLUS_1                           31                             85
  CLUS_2                           14                             59
  CLUS_3                           19                             86
  CLUS_4                           15                             58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P15.31) MUTATED       28     34     17
  DEL PEAK  8(5P15.31) WILD-TYPE     77    131     80
D28V6, multiclass
        clus
vv       DEL PEAK  8(5P15.31) MUTATED DEL PEAK  8(5P15.31) WILD-TYPE
  CLUS_1                           28                             77
  CLUS_2                           34                            131
  CLUS_3                           17                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5P15.31) MUTATED       20     23     21     11
  DEL PEAK  8(5P15.31) WILD-TYPE     77     80     76     43
D28V7, multiclass
        clus
vv       DEL PEAK  8(5P15.31) MUTATED DEL PEAK  8(5P15.31) WILD-TYPE
  CLUS_1                           20                             77
  CLUS_2                           23                             80
  CLUS_3                           21                             76
  CLUS_4                           11                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5P15.31) MUTATED       29     15     23      8
  DEL PEAK  8(5P15.31) WILD-TYPE    103     78     65     30
D28V8, multiclass
        clus
vv       DEL PEAK  8(5P15.31) MUTATED DEL PEAK  8(5P15.31) WILD-TYPE
  CLUS_1                           29                            103
  CLUS_2                           15                             78
  CLUS_3                           23                             65
  CLUS_4                            8                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P15.31) MUTATED       15     23     36
  DEL PEAK  8(5P15.31) WILD-TYPE     70     96     97
D28V9, multiclass
        clus
vv       DEL PEAK  8(5P15.31) MUTATED DEL PEAK  8(5P15.31) WILD-TYPE
  CLUS_1                           15                             70
  CLUS_2                           23                             96
  CLUS_3                           36                             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(5P15.31) MUTATED       11      7     11     14      6      1
  DEL PEAK  8(5P15.31) WILD-TYPE     25     17     40     49     32     16
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  8(5P15.31) MUTATED       15      6      3
  DEL PEAK  8(5P15.31) WILD-TYPE     49     23     12
D28V10, multiclass
        clus
vv       DEL PEAK  8(5P15.31) MUTATED DEL PEAK  8(5P15.31) WILD-TYPE
  CLUS_1                           11                             25
  CLUS_2                            7                             17
  CLUS_3                           11                             40
  CLUS_4                           14                             49
  CLUS_5                            6                             32
  CLUS_6                            1                             16
  CLUS_7                           15                             49
  CLUS_8                            6                             23
  CLUS_9                            3                             12
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK  9(5Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q12.1) MUTATED       26     57     14
  DEL PEAK  9(5Q12.1) WILD-TYPE    128     53     89
D29V1, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          26                           128
  CLUS_2                          57                            53
  CLUS_3                          14                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q12.1) MUTATED       29     28      6     34
  DEL PEAK  9(5Q12.1) WILD-TYPE     82     94     28     65
D29V2, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          29                            82
  CLUS_2                          28                            94
  CLUS_3                           6                            28
  CLUS_4                          34                            65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(5Q12.1) MUTATED        2     18     11     20     14
  DEL PEAK  9(5Q12.1) WILD-TYPE     37     60     32     49     18
D29V3, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                           2                            37
  CLUS_2                          18                            60
  CLUS_3                          11                            32
  CLUS_4                          20                            49
  CLUS_5                          14                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q12.1) MUTATED       19     17     29
  DEL PEAK  9(5Q12.1) WILD-TYPE     67     67     62
D29V4, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          19                            67
  CLUS_2                          17                            67
  CLUS_3                          29                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q12.1) MUTATED       37     15     28     17
  DEL PEAK  9(5Q12.1) WILD-TYPE     79     58     77     56
D29V5, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          37                            79
  CLUS_2                          15                            58
  CLUS_3                          28                            77
  CLUS_4                          17                            56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q12.1) MUTATED       31     35     31
  DEL PEAK  9(5Q12.1) WILD-TYPE     74    130     66
D29V6, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          31                            74
  CLUS_2                          35                           130
  CLUS_3                          31                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q12.1) MUTATED       23     28     24     16
  DEL PEAK  9(5Q12.1) WILD-TYPE     74     75     73     38
D29V7, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          23                            74
  CLUS_2                          28                            75
  CLUS_3                          24                            73
  CLUS_4                          16                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q12.1) MUTATED       34     21     23     13
  DEL PEAK  9(5Q12.1) WILD-TYPE     98     72     65     25
D29V8, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          34                            98
  CLUS_2                          21                            72
  CLUS_3                          23                            65
  CLUS_4                          13                            25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q12.1) MUTATED       19     34     36
  DEL PEAK  9(5Q12.1) WILD-TYPE     66     85     97
D29V9, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          19                            66
  CLUS_2                          34                            85
  CLUS_3                          36                            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(5Q12.1) MUTATED       10      6     13     13     10      4
  DEL PEAK  9(5Q12.1) WILD-TYPE     26     18     38     50     28     13
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  9(5Q12.1) MUTATED       18     10      5
  DEL PEAK  9(5Q12.1) WILD-TYPE     46     19     10
D29V10, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          10                            26
  CLUS_2                           6                            18
  CLUS_3                          13                            38
  CLUS_4                          13                            50
  CLUS_5                          10                            28
  CLUS_6                           4                            13
  CLUS_7                          18                            46
  CLUS_8                          10                            19
  CLUS_9                           5                            10
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK 10(5Q31.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q31.3) MUTATED       33     72     26
  DEL PEAK 10(5Q31.3) WILD-TYPE    121     38     77
D30V1, multiclass
        clus
vv       DEL PEAK 10(5Q31.3) MUTATED DEL PEAK 10(5Q31.3) WILD-TYPE
  CLUS_1                          33                           121
  CLUS_2                          72                            38
  CLUS_3                          26                            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q31.3) MUTATED       43     42      5     41
  DEL PEAK 10(5Q31.3) WILD-TYPE     68     80     29     58
D30V2, multiclass
        clus
vv       DEL PEAK 10(5Q31.3) MUTATED DEL PEAK 10(5Q31.3) WILD-TYPE
  CLUS_1                          43                            68
  CLUS_2                          42                            80
  CLUS_3                           5                            29
  CLUS_4                          41                            58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(5Q31.3) MUTATED        5     26     14     25     15
  DEL PEAK 10(5Q31.3) WILD-TYPE     34     52     29     44     17
D30V3, multiclass
        clus
vv       DEL PEAK 10(5Q31.3) MUTATED DEL PEAK 10(5Q31.3) WILD-TYPE
  CLUS_1                           5                            34
  CLUS_2                          26                            52
  CLUS_3                          14                            29
  CLUS_4                          25                            44
  CLUS_5                          15                            17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q31.3) MUTATED       26     26     33
  DEL PEAK 10(5Q31.3) WILD-TYPE     60     58     58
D30V4, multiclass
        clus
vv       DEL PEAK 10(5Q31.3) MUTATED DEL PEAK 10(5Q31.3) WILD-TYPE
  CLUS_1                          26                            60
  CLUS_2                          26                            58
  CLUS_3                          33                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q31.3) MUTATED       47     22     41     21
  DEL PEAK 10(5Q31.3) WILD-TYPE     69     51     64     52
D30V5, multiclass
        clus
vv       DEL PEAK 10(5Q31.3) MUTATED DEL PEAK 10(5Q31.3) WILD-TYPE
  CLUS_1                          47                            69
  CLUS_2                          22                            51
  CLUS_3                          41                            64
  CLUS_4                          21                            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q31.3) MUTATED       37     54     40
  DEL PEAK 10(5Q31.3) WILD-TYPE     68    111     57
D30V6, multiclass
        clus
vv       DEL PEAK 10(5Q31.3) MUTATED DEL PEAK 10(5Q31.3) WILD-TYPE
  CLUS_1                          37                            68
  CLUS_2                          54                           111
  CLUS_3                          40                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q31.3) MUTATED       34     40     32     20
  DEL PEAK 10(5Q31.3) WILD-TYPE     63     63     65     34
D30V7, multiclass
        clus
vv       DEL PEAK 10(5Q31.3) MUTATED DEL PEAK 10(5Q31.3) WILD-TYPE
  CLUS_1                          34                            63
  CLUS_2                          40                            63
  CLUS_3                          32                            65
  CLUS_4                          20                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q31.3) MUTATED       48     30     31     17
  DEL PEAK 10(5Q31.3) WILD-TYPE     84     63     57     21
D30V8, multiclass
        clus
vv       DEL PEAK 10(5Q31.3) MUTATED DEL PEAK 10(5Q31.3) WILD-TYPE
  CLUS_1                          48                            84
  CLUS_2                          30                            63
  CLUS_3                          31                            57
  CLUS_4                          17                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q31.3) MUTATED       27     46     49
  DEL PEAK 10(5Q31.3) WILD-TYPE     58     73     84
D30V9, multiclass
        clus
vv       DEL PEAK 10(5Q31.3) MUTATED DEL PEAK 10(5Q31.3) WILD-TYPE
  CLUS_1                          27                            58
  CLUS_2                          46                            73
  CLUS_3                          49                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(5Q31.3) MUTATED       12     11     20     22     14      5
  DEL PEAK 10(5Q31.3) WILD-TYPE     24     13     31     41     24     12
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 10(5Q31.3) MUTATED       19     14      5
  DEL PEAK 10(5Q31.3) WILD-TYPE     45     15     10
D30V10, multiclass
        clus
vv       DEL PEAK 10(5Q31.3) MUTATED DEL PEAK 10(5Q31.3) WILD-TYPE
  CLUS_1                          12                            24
  CLUS_2                          11                            13
  CLUS_3                          20                            31
  CLUS_4                          22                            41
  CLUS_5                          14                            24
  CLUS_6                           5                            12
  CLUS_7                          19                            45
  CLUS_8                          14                            15
  CLUS_9                           5                            10
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK 11(6Q21) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q21) MUTATED      132     54     28
  DEL PEAK 11(6Q21) WILD-TYPE     22     56     75
D31V1, multiclass
        clus
vv       DEL PEAK 11(6Q21) MUTATED DEL PEAK 11(6Q21) WILD-TYPE
  CLUS_1                       132                          22
  CLUS_2                        54                          56
  CLUS_3                        28                          75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q21) MUTATED       72     55     19     68
  DEL PEAK 11(6Q21) WILD-TYPE     39     67     15     31
D31V2, multiclass
        clus
vv       DEL PEAK 11(6Q21) MUTATED DEL PEAK 11(6Q21) WILD-TYPE
  CLUS_1                        72                          39
  CLUS_2                        55                          67
  CLUS_3                        19                          15
  CLUS_4                        68                          31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(6Q21) MUTATED       19     44     26     44     19
  DEL PEAK 11(6Q21) WILD-TYPE     20     34     17     25     13
D31V3, multiclass
        clus
vv       DEL PEAK 11(6Q21) MUTATED DEL PEAK 11(6Q21) WILD-TYPE
  CLUS_1                        19                          20
  CLUS_2                        44                          34
  CLUS_3                        26                          17
  CLUS_4                        44                          25
  CLUS_5                        19                          13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q21) MUTATED       53     44     55
  DEL PEAK 11(6Q21) WILD-TYPE     33     40     36
D31V4, multiclass
        clus
vv       DEL PEAK 11(6Q21) MUTATED DEL PEAK 11(6Q21) WILD-TYPE
  CLUS_1                        53                          33
  CLUS_2                        44                          40
  CLUS_3                        55                          36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q21) MUTATED       78     29     65     42
  DEL PEAK 11(6Q21) WILD-TYPE     38     44     40     31
D31V5, multiclass
        clus
vv       DEL PEAK 11(6Q21) MUTATED DEL PEAK 11(6Q21) WILD-TYPE
  CLUS_1                        78                          38
  CLUS_2                        29                          44
  CLUS_3                        65                          40
  CLUS_4                        42                          31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q21) MUTATED       68     87     59
  DEL PEAK 11(6Q21) WILD-TYPE     37     78     38
D31V6, multiclass
        clus
vv       DEL PEAK 11(6Q21) MUTATED DEL PEAK 11(6Q21) WILD-TYPE
  CLUS_1                        68                          37
  CLUS_2                        87                          78
  CLUS_3                        59                          38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q21) MUTATED       54     58     60     36
  DEL PEAK 11(6Q21) WILD-TYPE     43     45     37     18
D31V7, multiclass
        clus
vv       DEL PEAK 11(6Q21) MUTATED DEL PEAK 11(6Q21) WILD-TYPE
  CLUS_1                        54                          43
  CLUS_2                        58                          45
  CLUS_3                        60                          37
  CLUS_4                        36                          18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q21) MUTATED       86     48     49     25
  DEL PEAK 11(6Q21) WILD-TYPE     46     45     39     13
D31V8, multiclass
        clus
vv       DEL PEAK 11(6Q21) MUTATED DEL PEAK 11(6Q21) WILD-TYPE
  CLUS_1                        86                          46
  CLUS_2                        48                          45
  CLUS_3                        49                          39
  CLUS_4                        25                          13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q21) MUTATED       42     72     85
  DEL PEAK 11(6Q21) WILD-TYPE     43     47     48
D31V9, multiclass
        clus
vv       DEL PEAK 11(6Q21) MUTATED DEL PEAK 11(6Q21) WILD-TYPE
  CLUS_1                        42                          43
  CLUS_2                        72                          47
  CLUS_3                        85                          48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 11(6Q21) MUTATED       17     13     25     40     22     12     39
  DEL PEAK 11(6Q21) WILD-TYPE     19     11     26     23     16      5     25
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK 11(6Q21) MUTATED       20     11
  DEL PEAK 11(6Q21) WILD-TYPE      9      4
D31V10, multiclass
        clus
vv       DEL PEAK 11(6Q21) MUTATED DEL PEAK 11(6Q21) WILD-TYPE
  CLUS_1                        17                          19
  CLUS_2                        13                          11
  CLUS_3                        25                          26
  CLUS_4                        40                          23
  CLUS_5                        22                          16
  CLUS_6                        12                           5
  CLUS_7                        39                          25
  CLUS_8                        20                           9
  CLUS_9                        11                           4
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK 12(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q26) MUTATED      135     57     29
  DEL PEAK 12(6Q26) WILD-TYPE     19     53     74
D32V1, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                       135                          19
  CLUS_2                        57                          53
  CLUS_3                        29                          74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q26) MUTATED       71     59     20     71
  DEL PEAK 12(6Q26) WILD-TYPE     40     63     14     28
D32V2, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        71                          40
  CLUS_2                        59                          63
  CLUS_3                        20                          14
  CLUS_4                        71                          28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6Q26) MUTATED       17     47     26     46     21
  DEL PEAK 12(6Q26) WILD-TYPE     22     31     17     23     11
D32V3, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        17                          22
  CLUS_2                        47                          31
  CLUS_3                        26                          17
  CLUS_4                        46                          23
  CLUS_5                        21                          11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q26) MUTATED       56     44     57
  DEL PEAK 12(6Q26) WILD-TYPE     30     40     34
D32V4, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        56                          30
  CLUS_2                        44                          40
  CLUS_3                        57                          34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q26) MUTATED       78     31     67     45
  DEL PEAK 12(6Q26) WILD-TYPE     38     42     38     28
D32V5, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        78                          38
  CLUS_2                        31                          42
  CLUS_3                        67                          38
  CLUS_4                        45                          28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q26) MUTATED       70     88     63
  DEL PEAK 12(6Q26) WILD-TYPE     35     77     34
D32V6, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        70                          35
  CLUS_2                        88                          77
  CLUS_3                        63                          34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q26) MUTATED       53     63     64     35
  DEL PEAK 12(6Q26) WILD-TYPE     44     40     33     19
D32V7, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        53                          44
  CLUS_2                        63                          40
  CLUS_3                        64                          33
  CLUS_4                        35                          19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q26) MUTATED       89     51     50     25
  DEL PEAK 12(6Q26) WILD-TYPE     43     42     38     13
D32V8, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        89                          43
  CLUS_2                        51                          42
  CLUS_3                        50                          38
  CLUS_4                        25                          13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q26) MUTATED       46     75     85
  DEL PEAK 12(6Q26) WILD-TYPE     39     44     48
D32V9, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        46                          39
  CLUS_2                        75                          44
  CLUS_3                        85                          48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 12(6Q26) MUTATED       16     14     26     41     26     12     40
  DEL PEAK 12(6Q26) WILD-TYPE     20     10     25     22     12      5     24
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK 12(6Q26) MUTATED       20     11
  DEL PEAK 12(6Q26) WILD-TYPE      9      4
D32V10, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        16                          20
  CLUS_2                        14                          10
  CLUS_3                        26                          25
  CLUS_4                        41                          22
  CLUS_5                        26                          12
  CLUS_6                        12                           5
  CLUS_7                        40                          24
  CLUS_8                        20                           9
  CLUS_9                        11                           4
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK 13(8P23.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(8P23.3) MUTATED       54     17     18
  DEL PEAK 13(8P23.3) WILD-TYPE    100     93     85
D33V1, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                          54                           100
  CLUS_2                          17                            93
  CLUS_3                          18                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(8P23.3) MUTATED       28     21     12     28
  DEL PEAK 13(8P23.3) WILD-TYPE     83    101     22     71
D33V2, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                          28                            83
  CLUS_2                          21                           101
  CLUS_3                          12                            22
  CLUS_4                          28                            71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(8P23.3) MUTATED        4     19     10     26      9
  DEL PEAK 13(8P23.3) WILD-TYPE     35     59     33     43     23
D33V3, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                           4                            35
  CLUS_2                          19                            59
  CLUS_3                          10                            33
  CLUS_4                          26                            43
  CLUS_5                           9                            23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(8P23.3) MUTATED       27     13     28
  DEL PEAK 13(8P23.3) WILD-TYPE     59     71     63
D33V4, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                          27                            59
  CLUS_2                          13                            71
  CLUS_3                          28                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(8P23.3) MUTATED       31     11     23     24
  DEL PEAK 13(8P23.3) WILD-TYPE     85     62     82     49
D33V5, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                          31                            85
  CLUS_2                          11                            62
  CLUS_3                          23                            82
  CLUS_4                          24                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(8P23.3) MUTATED       24     41     24
  DEL PEAK 13(8P23.3) WILD-TYPE     81    124     73
D33V6, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                          24                            81
  CLUS_2                          41                           124
  CLUS_3                          24                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(8P23.3) MUTATED       29     28     18     13
  DEL PEAK 13(8P23.3) WILD-TYPE     68     75     79     41
D33V7, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                          29                            68
  CLUS_2                          28                            75
  CLUS_3                          18                            79
  CLUS_4                          13                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(8P23.3) MUTATED       35     18     26      9
  DEL PEAK 13(8P23.3) WILD-TYPE     97     75     62     29
D33V8, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                          35                            97
  CLUS_2                          18                            75
  CLUS_3                          26                            62
  CLUS_4                           9                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(8P23.3) MUTATED       19     26     40
  DEL PEAK 13(8P23.3) WILD-TYPE     66     93     93
D33V9, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                          19                            66
  CLUS_2                          26                            93
  CLUS_3                          40                            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(8P23.3) MUTATED       12      4     15     16      6      4
  DEL PEAK 13(8P23.3) WILD-TYPE     24     20     36     47     32     13
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 13(8P23.3) MUTATED       16      8      4
  DEL PEAK 13(8P23.3) WILD-TYPE     48     21     11
D33V10, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                          12                            24
  CLUS_2                           4                            20
  CLUS_3                          15                            36
  CLUS_4                          16                            47
  CLUS_5                           6                            32
  CLUS_6                           4                            13
  CLUS_7                          16                            48
  CLUS_8                           8                            21
  CLUS_9                           4                            11
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK 14(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P23) MUTATED      112     84     53
  DEL PEAK 14(9P23) WILD-TYPE     42     26     50
D34V1, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                       112                          42
  CLUS_2                        84                          26
  CLUS_3                        53                          50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9P23) MUTATED       80     71     23     75
  DEL PEAK 14(9P23) WILD-TYPE     31     51     11     24
D34V2, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                        80                          31
  CLUS_2                        71                          51
  CLUS_3                        23                          11
  CLUS_4                        75                          24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(9P23) MUTATED       24     58     30     38     26
  DEL PEAK 14(9P23) WILD-TYPE     15     20     13     31      6
D34V3, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                        24                          15
  CLUS_2                        58                          20
  CLUS_3                        30                          13
  CLUS_4                        38                          31
  CLUS_5                        26                           6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P23) MUTATED       52     60     64
  DEL PEAK 14(9P23) WILD-TYPE     34     24     27
D34V4, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                        52                          34
  CLUS_2                        60                          24
  CLUS_3                        64                          27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9P23) MUTATED       77     41     80     51
  DEL PEAK 14(9P23) WILD-TYPE     39     32     25     22
D34V5, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                        77                          39
  CLUS_2                        41                          32
  CLUS_3                        80                          25
  CLUS_4                        51                          22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P23) MUTATED       73    104     72
  DEL PEAK 14(9P23) WILD-TYPE     32     61     25
D34V6, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                        73                          32
  CLUS_2                       104                          61
  CLUS_3                        72                          25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9P23) MUTATED       61     65     75     35
  DEL PEAK 14(9P23) WILD-TYPE     36     38     22     19
D34V7, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                        61                          36
  CLUS_2                        65                          38
  CLUS_3                        75                          22
  CLUS_4                        35                          19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9P23) MUTATED       98     58     59     21
  DEL PEAK 14(9P23) WILD-TYPE     34     35     29     17
D34V8, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                        98                          34
  CLUS_2                        58                          35
  CLUS_3                        59                          29
  CLUS_4                        21                          17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P23) MUTATED       54     82     90
  DEL PEAK 14(9P23) WILD-TYPE     31     37     43
D34V9, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                        54                          31
  CLUS_2                        82                          37
  CLUS_3                        90                          43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 14(9P23) MUTATED       19     18     31     36     27     16     47
  DEL PEAK 14(9P23) WILD-TYPE     17      6     20     27     11      1     17
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK 14(9P23) MUTATED       17     15
  DEL PEAK 14(9P23) WILD-TYPE     12      0
D34V10, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                        19                          17
  CLUS_2                        18                           6
  CLUS_3                        31                          20
  CLUS_4                        36                          27
  CLUS_5                        27                          11
  CLUS_6                        16                           1
  CLUS_7                        47                          17
  CLUS_8                        17                          12
  CLUS_9                        15                           0
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK 15(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P21.3) MUTATED      130     90     58
  DEL PEAK 15(9P21.3) WILD-TYPE     24     20     45
D35V1, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                         130                            24
  CLUS_2                          90                            20
  CLUS_3                          58                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P21.3) MUTATED       89     78     25     86
  DEL PEAK 15(9P21.3) WILD-TYPE     22     44      9     13
D35V2, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                          89                            22
  CLUS_2                          78                            44
  CLUS_3                          25                             9
  CLUS_4                          86                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(9P21.3) MUTATED       24     65     35     45     28
  DEL PEAK 15(9P21.3) WILD-TYPE     15     13      8     24      4
D35V3, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                          24                            15
  CLUS_2                          65                            13
  CLUS_3                          35                             8
  CLUS_4                          45                            24
  CLUS_5                          28                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P21.3) MUTATED       59     66     72
  DEL PEAK 15(9P21.3) WILD-TYPE     27     18     19
D35V4, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                          59                            27
  CLUS_2                          66                            18
  CLUS_3                          72                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P21.3) MUTATED       87     44     89     58
  DEL PEAK 15(9P21.3) WILD-TYPE     29     29     16     15
D35V5, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                          87                            29
  CLUS_2                          44                            29
  CLUS_3                          89                            16
  CLUS_4                          58                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P21.3) MUTATED       81    113     84
  DEL PEAK 15(9P21.3) WILD-TYPE     24     52     13
D35V6, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                          81                            24
  CLUS_2                         113                            52
  CLUS_3                          84                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P21.3) MUTATED       66     73     82     43
  DEL PEAK 15(9P21.3) WILD-TYPE     31     30     15     11
D35V7, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                          66                            31
  CLUS_2                          73                            30
  CLUS_3                          82                            15
  CLUS_4                          43                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P21.3) MUTATED      105     68     64     27
  DEL PEAK 15(9P21.3) WILD-TYPE     27     25     24     11
D35V8, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                         105                            27
  CLUS_2                          68                            25
  CLUS_3                          64                            24
  CLUS_4                          27                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P21.3) MUTATED       58     96     99
  DEL PEAK 15(9P21.3) WILD-TYPE     27     23     34
D35V9, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                          58                            27
  CLUS_2                          96                            23
  CLUS_3                          99                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(9P21.3) MUTATED       23     19     33     41     34     16
  DEL PEAK 15(9P21.3) WILD-TYPE     13      5     18     22      4      1
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 15(9P21.3) MUTATED       51     21     15
  DEL PEAK 15(9P21.3) WILD-TYPE     13      8      0
D35V10, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                          23                            13
  CLUS_2                          19                             5
  CLUS_3                          33                            18
  CLUS_4                          41                            22
  CLUS_5                          34                             4
  CLUS_6                          16                             1
  CLUS_7                          51                            13
  CLUS_8                          21                             8
  CLUS_9                          15                             0
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK 16(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10P15.3) MUTATED       90     84     25
  DEL PEAK 16(10P15.3) WILD-TYPE     64     26     78
D36V1, multiclass
        clus
vv       DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE
  CLUS_1                           90                             64
  CLUS_2                           84                             26
  CLUS_3                           25                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(10P15.3) MUTATED       57     55     19     68
  DEL PEAK 16(10P15.3) WILD-TYPE     54     67     15     31
D36V2, multiclass
        clus
vv       DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE
  CLUS_1                           57                             54
  CLUS_2                           55                             67
  CLUS_3                           19                             15
  CLUS_4                           68                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(10P15.3) MUTATED       19     44     26     34     18
  DEL PEAK 16(10P15.3) WILD-TYPE     20     34     17     35     14
D36V3, multiclass
        clus
vv       DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE
  CLUS_1                           19                             20
  CLUS_2                           44                             34
  CLUS_3                           26                             17
  CLUS_4                           34                             35
  CLUS_5                           18                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10P15.3) MUTATED       50     45     46
  DEL PEAK 16(10P15.3) WILD-TYPE     36     39     45
D36V4, multiclass
        clus
vv       DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE
  CLUS_1                           50                             36
  CLUS_2                           45                             39
  CLUS_3                           46                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(10P15.3) MUTATED       52     35     71     41
  DEL PEAK 16(10P15.3) WILD-TYPE     64     38     34     32
D36V5, multiclass
        clus
vv       DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE
  CLUS_1                           52                             64
  CLUS_2                           35                             38
  CLUS_3                           71                             34
  CLUS_4                           41                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10P15.3) MUTATED       57     75     67
  DEL PEAK 16(10P15.3) WILD-TYPE     48     90     30
D36V6, multiclass
        clus
vv       DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE
  CLUS_1                           57                             48
  CLUS_2                           75                             90
  CLUS_3                           67                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(10P15.3) MUTATED       53     54     56     30
  DEL PEAK 16(10P15.3) WILD-TYPE     44     49     41     24
D36V7, multiclass
        clus
vv       DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE
  CLUS_1                           53                             44
  CLUS_2                           54                             49
  CLUS_3                           56                             41
  CLUS_4                           30                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(10P15.3) MUTATED       81     51     44     17
  DEL PEAK 16(10P15.3) WILD-TYPE     51     42     44     21
D36V8, multiclass
        clus
vv       DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE
  CLUS_1                           81                             51
  CLUS_2                           51                             42
  CLUS_3                           44                             44
  CLUS_4                           17                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10P15.3) MUTATED       41     70     75
  DEL PEAK 16(10P15.3) WILD-TYPE     44     49     58
D36V9, multiclass
        clus
vv       DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE
  CLUS_1                           41                             44
  CLUS_2                           70                             49
  CLUS_3                           75                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(10P15.3) MUTATED       16     14     22     38     27     13
  DEL PEAK 16(10P15.3) WILD-TYPE     20     10     29     25     11      4
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 16(10P15.3) MUTATED       33     15      8
  DEL PEAK 16(10P15.3) WILD-TYPE     31     14      7
D36V10, multiclass
        clus
vv       DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE
  CLUS_1                           16                             20
  CLUS_2                           14                             10
  CLUS_3                           22                             29
  CLUS_4                           38                             25
  CLUS_5                           27                             11
  CLUS_6                           13                              4
  CLUS_7                           33                             31
  CLUS_8                           15                             14
  CLUS_9                            8                              7
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK 17(10Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(10Q21.1) MUTATED       96     93     28
  DEL PEAK 17(10Q21.1) WILD-TYPE     58     17     75
D37V1, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                           96                             58
  CLUS_2                           93                             17
  CLUS_3                           28                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q21.1) MUTATED       66     63     17     71
  DEL PEAK 17(10Q21.1) WILD-TYPE     45     59     17     28
D37V2, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                           66                             45
  CLUS_2                           63                             59
  CLUS_3                           17                             17
  CLUS_4                           71                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(10Q21.1) MUTATED       22     44     27     40     21
  DEL PEAK 17(10Q21.1) WILD-TYPE     17     34     16     29     11
D37V3, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                           22                             17
  CLUS_2                           44                             34
  CLUS_3                           27                             16
  CLUS_4                           40                             29
  CLUS_5                           21                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(10Q21.1) MUTATED       51     48     55
  DEL PEAK 17(10Q21.1) WILD-TYPE     35     36     36
D37V4, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                           51                             35
  CLUS_2                           48                             36
  CLUS_3                           55                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q21.1) MUTATED       60     40     69     48
  DEL PEAK 17(10Q21.1) WILD-TYPE     56     33     36     25
D37V5, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                           60                             56
  CLUS_2                           40                             33
  CLUS_3                           69                             36
  CLUS_4                           48                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(10Q21.1) MUTATED       59     90     68
  DEL PEAK 17(10Q21.1) WILD-TYPE     46     75     29
D37V6, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                           59                             46
  CLUS_2                           90                             75
  CLUS_3                           68                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q21.1) MUTATED       51     64     60     32
  DEL PEAK 17(10Q21.1) WILD-TYPE     46     39     37     22
D37V7, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                           51                             46
  CLUS_2                           64                             39
  CLUS_3                           60                             37
  CLUS_4                           32                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q21.1) MUTATED       88     52     46     21
  DEL PEAK 17(10Q21.1) WILD-TYPE     44     41     42     17
D37V8, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                           88                             44
  CLUS_2                           52                             41
  CLUS_3                           46                             42
  CLUS_4                           21                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(10Q21.1) MUTATED       43     76     81
  DEL PEAK 17(10Q21.1) WILD-TYPE     42     43     52
D37V9, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                           43                             42
  CLUS_2                           76                             43
  CLUS_3                           81                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(10Q21.1) MUTATED       17     13     29     35     26     12
  DEL PEAK 17(10Q21.1) WILD-TYPE     19     11     22     28     12      5
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 17(10Q21.1) MUTATED       41     17     10
  DEL PEAK 17(10Q21.1) WILD-TYPE     23     12      5
D37V10, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                           17                             19
  CLUS_2                           13                             11
  CLUS_3                           29                             22
  CLUS_4                           35                             28
  CLUS_5                           26                             12
  CLUS_6                           12                              5
  CLUS_7                           41                             23
  CLUS_8                           17                             12
  CLUS_9                           10                              5
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 18(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q23.31) MUTATED      103     93     34
  DEL PEAK 18(10Q23.31) WILD-TYPE     51     17     69
D38V1, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                           103                              51
  CLUS_2                            93                              17
  CLUS_3                            34                              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10Q23.31) MUTATED       70     64     20     76
  DEL PEAK 18(10Q23.31) WILD-TYPE     41     58     14     23
D38V2, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            70                              41
  CLUS_2                            64                              58
  CLUS_3                            20                              14
  CLUS_4                            76                              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(10Q23.31) MUTATED       22     50     26     43     22
  DEL PEAK 18(10Q23.31) WILD-TYPE     17     28     17     26     10
D38V3, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            22                              17
  CLUS_2                            50                              28
  CLUS_3                            26                              17
  CLUS_4                            43                              26
  CLUS_5                            22                              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q23.31) MUTATED       53     50     60
  DEL PEAK 18(10Q23.31) WILD-TYPE     33     34     31
D38V4, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            53                              33
  CLUS_2                            50                              34
  CLUS_3                            60                              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10Q23.31) MUTATED       63     42     73     52
  DEL PEAK 18(10Q23.31) WILD-TYPE     53     31     32     21
D38V5, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            63                              53
  CLUS_2                            42                              31
  CLUS_3                            73                              32
  CLUS_4                            52                              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q23.31) MUTATED       63     95     72
  DEL PEAK 18(10Q23.31) WILD-TYPE     42     70     25
D38V6, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            63                              42
  CLUS_2                            95                              70
  CLUS_3                            72                              25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10Q23.31) MUTATED       57     66     61     37
  DEL PEAK 18(10Q23.31) WILD-TYPE     40     37     36     17
D38V7, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            57                              40
  CLUS_2                            66                              37
  CLUS_3                            61                              36
  CLUS_4                            37                              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10Q23.31) MUTATED       90     55     50     26
  DEL PEAK 18(10Q23.31) WILD-TYPE     42     38     38     12
D38V8, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            90                              42
  CLUS_2                            55                              38
  CLUS_3                            50                              38
  CLUS_4                            26                              12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q23.31) MUTATED       48     78     88
  DEL PEAK 18(10Q23.31) WILD-TYPE     37     41     45
D38V9, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            48                              37
  CLUS_2                            78                              41
  CLUS_3                            88                              45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(10Q23.31) MUTATED       18     14     30     37     28     13
  DEL PEAK 18(10Q23.31) WILD-TYPE     18     10     21     26     10      4
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 18(10Q23.31) MUTATED       42     21     11
  DEL PEAK 18(10Q23.31) WILD-TYPE     22      8      4
D38V10, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            18                              18
  CLUS_2                            14                              10
  CLUS_3                            30                              21
  CLUS_4                            37                              26
  CLUS_5                            28                              10
  CLUS_6                            13                               4
  CLUS_7                            42                              22
  CLUS_8                            21                               8
  CLUS_9                            11                               4
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 19(10Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q26.3) MUTATED      103     95     38
  DEL PEAK 19(10Q26.3) WILD-TYPE     51     15     65
D39V1, multiclass
        clus
vv       DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE
  CLUS_1                          103                             51
  CLUS_2                           95                             15
  CLUS_3                           38                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10Q26.3) MUTATED       69     69     20     78
  DEL PEAK 19(10Q26.3) WILD-TYPE     42     53     14     21
D39V2, multiclass
        clus
vv       DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE
  CLUS_1                           69                             42
  CLUS_2                           69                             53
  CLUS_3                           20                             14
  CLUS_4                           78                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(10Q26.3) MUTATED       24     50     27     44     22
  DEL PEAK 19(10Q26.3) WILD-TYPE     15     28     16     25     10
D39V3, multiclass
        clus
vv       DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE
  CLUS_1                           24                             15
  CLUS_2                           50                             28
  CLUS_3                           27                             16
  CLUS_4                           44                             25
  CLUS_5                           22                             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q26.3) MUTATED       55     54     58
  DEL PEAK 19(10Q26.3) WILD-TYPE     31     30     33
D39V4, multiclass
        clus
vv       DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE
  CLUS_1                           55                             31
  CLUS_2                           54                             30
  CLUS_3                           58                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10Q26.3) MUTATED       62     44     77     53
  DEL PEAK 19(10Q26.3) WILD-TYPE     54     29     28     20
D39V5, multiclass
        clus
vv       DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE
  CLUS_1                           62                             54
  CLUS_2                           44                             29
  CLUS_3                           77                             28
  CLUS_4                           53                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q26.3) MUTATED       64     97     75
  DEL PEAK 19(10Q26.3) WILD-TYPE     41     68     22
D39V6, multiclass
        clus
vv       DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE
  CLUS_1                           64                             41
  CLUS_2                           97                             68
  CLUS_3                           75                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10Q26.3) MUTATED       59     65     67     35
  DEL PEAK 19(10Q26.3) WILD-TYPE     38     38     30     19
D39V7, multiclass
        clus
vv       DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE
  CLUS_1                           59                             38
  CLUS_2                           65                             38
  CLUS_3                           67                             30
  CLUS_4                           35                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10Q26.3) MUTATED       94     58     52     22
  DEL PEAK 19(10Q26.3) WILD-TYPE     38     35     36     16
D39V8, multiclass
        clus
vv       DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE
  CLUS_1                           94                             38
  CLUS_2                           58                             35
  CLUS_3                           52                             36
  CLUS_4                           22                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q26.3) MUTATED       48     84     87
  DEL PEAK 19(10Q26.3) WILD-TYPE     37     35     46
D39V9, multiclass
        clus
vv       DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE
  CLUS_1                           48                             37
  CLUS_2                           84                             35
  CLUS_3                           87                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(10Q26.3) MUTATED       18     16     30     38     29     14
  DEL PEAK 19(10Q26.3) WILD-TYPE     18      8     21     25      9      3
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 19(10Q26.3) MUTATED       45     18     11
  DEL PEAK 19(10Q26.3) WILD-TYPE     19     11      4
D39V10, multiclass
        clus
vv       DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE
  CLUS_1                           18                             18
  CLUS_2                           16                              8
  CLUS_3                           30                             21
  CLUS_4                           38                             25
  CLUS_5                           29                              9
  CLUS_6                           14                              3
  CLUS_7                           45                             19
  CLUS_8                           18                             11
  CLUS_9                           11                              4
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 20(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11P15.5) MUTATED       50     46     18
  DEL PEAK 20(11P15.5) WILD-TYPE    104     64     85
D40V1, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           50                            104
  CLUS_2                           46                             64
  CLUS_3                           18                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(11P15.5) MUTATED       36     30     14     34
  DEL PEAK 20(11P15.5) WILD-TYPE     75     92     20     65
D40V2, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           36                             75
  CLUS_2                           30                             92
  CLUS_3                           14                             20
  CLUS_4                           34                             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(11P15.5) MUTATED       10     25     17     23     11
  DEL PEAK 20(11P15.5) WILD-TYPE     29     53     26     46     21
D40V3, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           10                             29
  CLUS_2                           25                             53
  CLUS_3                           17                             26
  CLUS_4                           23                             46
  CLUS_5                           11                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11P15.5) MUTATED       27     27     32
  DEL PEAK 20(11P15.5) WILD-TYPE     59     57     59
D40V4, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           27                             59
  CLUS_2                           27                             57
  CLUS_3                           32                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(11P15.5) MUTATED       36     20     34     24
  DEL PEAK 20(11P15.5) WILD-TYPE     80     53     71     49
D40V5, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           36                             80
  CLUS_2                           20                             53
  CLUS_3                           34                             71
  CLUS_4                           24                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11P15.5) MUTATED       35     45     34
  DEL PEAK 20(11P15.5) WILD-TYPE     70    120     63
D40V6, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           35                             70
  CLUS_2                           45                            120
  CLUS_3                           34                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(11P15.5) MUTATED       31     35     25     20
  DEL PEAK 20(11P15.5) WILD-TYPE     66     68     72     34
D40V7, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           31                             66
  CLUS_2                           35                             68
  CLUS_3                           25                             72
  CLUS_4                           20                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(11P15.5) MUTATED       50     21     26     14
  DEL PEAK 20(11P15.5) WILD-TYPE     82     72     62     24
D40V8, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           50                             82
  CLUS_2                           21                             72
  CLUS_3                           26                             62
  CLUS_4                           14                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11P15.5) MUTATED       22     35     49
  DEL PEAK 20(11P15.5) WILD-TYPE     63     84     84
D40V9, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           22                             63
  CLUS_2                           35                             84
  CLUS_3                           49                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(11P15.5) MUTATED       10      9     18     15      8      5
  DEL PEAK 20(11P15.5) WILD-TYPE     26     15     33     48     30     12
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 20(11P15.5) MUTATED       24     13      4
  DEL PEAK 20(11P15.5) WILD-TYPE     40     16     11
D40V10, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           10                             26
  CLUS_2                            9                             15
  CLUS_3                           18                             33
  CLUS_4                           15                             48
  CLUS_5                            8                             30
  CLUS_6                            5                             12
  CLUS_7                           24                             40
  CLUS_8                           13                             16
  CLUS_9                            4                             11
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 21(11Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11Q23.3) MUTATED      101     67     36
  DEL PEAK 21(11Q23.3) WILD-TYPE     53     43     67
D41V1, multiclass
        clus
vv       DEL PEAK 21(11Q23.3) MUTATED DEL PEAK 21(11Q23.3) WILD-TYPE
  CLUS_1                          101                             53
  CLUS_2                           67                             43
  CLUS_3                           36                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11Q23.3) MUTATED       64     63     22     55
  DEL PEAK 21(11Q23.3) WILD-TYPE     47     59     12     44
D41V2, multiclass
        clus
vv       DEL PEAK 21(11Q23.3) MUTATED DEL PEAK 21(11Q23.3) WILD-TYPE
  CLUS_1                           64                             47
  CLUS_2                           63                             59
  CLUS_3                           22                             12
  CLUS_4                           55                             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(11Q23.3) MUTATED       18     43     23     45     19
  DEL PEAK 21(11Q23.3) WILD-TYPE     21     35     20     24     13
D41V3, multiclass
        clus
vv       DEL PEAK 21(11Q23.3) MUTATED DEL PEAK 21(11Q23.3) WILD-TYPE
  CLUS_1                           18                             21
  CLUS_2                           43                             35
  CLUS_3                           23                             20
  CLUS_4                           45                             24
  CLUS_5                           19                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11Q23.3) MUTATED       45     44     59
  DEL PEAK 21(11Q23.3) WILD-TYPE     41     40     32
D41V4, multiclass
        clus
vv       DEL PEAK 21(11Q23.3) MUTATED DEL PEAK 21(11Q23.3) WILD-TYPE
  CLUS_1                           45                             41
  CLUS_2                           44                             40
  CLUS_3                           59                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11Q23.3) MUTATED       74     37     53     40
  DEL PEAK 21(11Q23.3) WILD-TYPE     42     36     52     33
D41V5, multiclass
        clus
vv       DEL PEAK 21(11Q23.3) MUTATED DEL PEAK 21(11Q23.3) WILD-TYPE
  CLUS_1                           74                             42
  CLUS_2                           37                             36
  CLUS_3                           53                             52
  CLUS_4                           40                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11Q23.3) MUTATED       65     91     48
  DEL PEAK 21(11Q23.3) WILD-TYPE     40     74     49
D41V6, multiclass
        clus
vv       DEL PEAK 21(11Q23.3) MUTATED DEL PEAK 21(11Q23.3) WILD-TYPE
  CLUS_1                           65                             40
  CLUS_2                           91                             74
  CLUS_3                           48                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11Q23.3) MUTATED       59     60     47     33
  DEL PEAK 21(11Q23.3) WILD-TYPE     38     43     50     21
D41V7, multiclass
        clus
vv       DEL PEAK 21(11Q23.3) MUTATED DEL PEAK 21(11Q23.3) WILD-TYPE
  CLUS_1                           59                             38
  CLUS_2                           60                             43
  CLUS_3                           47                             50
  CLUS_4                           33                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11Q23.3) MUTATED       82     42     53     22
  DEL PEAK 21(11Q23.3) WILD-TYPE     50     51     35     16
D41V8, multiclass
        clus
vv       DEL PEAK 21(11Q23.3) MUTATED DEL PEAK 21(11Q23.3) WILD-TYPE
  CLUS_1                           82                             50
  CLUS_2                           42                             51
  CLUS_3                           53                             35
  CLUS_4                           22                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11Q23.3) MUTATED       45     61     87
  DEL PEAK 21(11Q23.3) WILD-TYPE     40     58     46
D41V9, multiclass
        clus
vv       DEL PEAK 21(11Q23.3) MUTATED DEL PEAK 21(11Q23.3) WILD-TYPE
  CLUS_1                           45                             40
  CLUS_2                           61                             58
  CLUS_3                           87                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(11Q23.3) MUTATED       19     15     32     36     13      8
  DEL PEAK 21(11Q23.3) WILD-TYPE     17      9     19     27     25      9
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 21(11Q23.3) MUTATED       42     19      9
  DEL PEAK 21(11Q23.3) WILD-TYPE     22     10      6
D41V10, multiclass
        clus
vv       DEL PEAK 21(11Q23.3) MUTATED DEL PEAK 21(11Q23.3) WILD-TYPE
  CLUS_1                           19                             17
  CLUS_2                           15                              9
  CLUS_3                           32                             19
  CLUS_4                           36                             27
  CLUS_5                           13                             25
  CLUS_6                            8                              9
  CLUS_7                           42                             22
  CLUS_8                           19                             10
  CLUS_9                            9                              6
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 22(12Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12Q23.3) MUTATED       44     32     16
  DEL PEAK 22(12Q23.3) WILD-TYPE    110     78     87
D42V1, multiclass
        clus
vv       DEL PEAK 22(12Q23.3) MUTATED DEL PEAK 22(12Q23.3) WILD-TYPE
  CLUS_1                           44                            110
  CLUS_2                           32                             78
  CLUS_3                           16                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(12Q23.3) MUTATED       38     21      5     28
  DEL PEAK 22(12Q23.3) WILD-TYPE     73    101     29     71
D42V2, multiclass
        clus
vv       DEL PEAK 22(12Q23.3) MUTATED DEL PEAK 22(12Q23.3) WILD-TYPE
  CLUS_1                           38                             73
  CLUS_2                           21                            101
  CLUS_3                            5                             29
  CLUS_4                           28                             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(12Q23.3) MUTATED        5     17     10     22      8
  DEL PEAK 22(12Q23.3) WILD-TYPE     34     61     33     47     24
D42V3, multiclass
        clus
vv       DEL PEAK 22(12Q23.3) MUTATED DEL PEAK 22(12Q23.3) WILD-TYPE
  CLUS_1                            5                             34
  CLUS_2                           17                             61
  CLUS_3                           10                             33
  CLUS_4                           22                             47
  CLUS_5                            8                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12Q23.3) MUTATED       25     14     23
  DEL PEAK 22(12Q23.3) WILD-TYPE     61     70     68
D42V4, multiclass
        clus
vv       DEL PEAK 22(12Q23.3) MUTATED DEL PEAK 22(12Q23.3) WILD-TYPE
  CLUS_1                           25                             61
  CLUS_2                           14                             70
  CLUS_3                           23                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(12Q23.3) MUTATED       28     16     32     16
  DEL PEAK 22(12Q23.3) WILD-TYPE     88     57     73     57
D42V5, multiclass
        clus
vv       DEL PEAK 22(12Q23.3) MUTATED DEL PEAK 22(12Q23.3) WILD-TYPE
  CLUS_1                           28                             88
  CLUS_2                           16                             57
  CLUS_3                           32                             73
  CLUS_4                           16                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12Q23.3) MUTATED       29     41     22
  DEL PEAK 22(12Q23.3) WILD-TYPE     76    124     75
D42V6, multiclass
        clus
vv       DEL PEAK 22(12Q23.3) MUTATED DEL PEAK 22(12Q23.3) WILD-TYPE
  CLUS_1                           29                             76
  CLUS_2                           41                            124
  CLUS_3                           22                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(12Q23.3) MUTATED       25     25     25      9
  DEL PEAK 22(12Q23.3) WILD-TYPE     72     78     72     45
D42V7, multiclass
        clus
vv       DEL PEAK 22(12Q23.3) MUTATED DEL PEAK 22(12Q23.3) WILD-TYPE
  CLUS_1                           25                             72
  CLUS_2                           25                             78
  CLUS_3                           25                             72
  CLUS_4                            9                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(12Q23.3) MUTATED       41     18     19      6
  DEL PEAK 22(12Q23.3) WILD-TYPE     91     75     69     32
D42V8, multiclass
        clus
vv       DEL PEAK 22(12Q23.3) MUTATED DEL PEAK 22(12Q23.3) WILD-TYPE
  CLUS_1                           41                             91
  CLUS_2                           18                             75
  CLUS_3                           19                             69
  CLUS_4                            6                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12Q23.3) MUTATED       18     27     35
  DEL PEAK 22(12Q23.3) WILD-TYPE     67     92     98
D42V9, multiclass
        clus
vv       DEL PEAK 22(12Q23.3) MUTATED DEL PEAK 22(12Q23.3) WILD-TYPE
  CLUS_1                           18                             67
  CLUS_2                           27                             92
  CLUS_3                           35                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(12Q23.3) MUTATED        9      6      8     19      5      6
  DEL PEAK 22(12Q23.3) WILD-TYPE     27     18     43     44     33     11
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 22(12Q23.3) MUTATED       18      5      4
  DEL PEAK 22(12Q23.3) WILD-TYPE     46     24     11
D42V10, multiclass
        clus
vv       DEL PEAK 22(12Q23.3) MUTATED DEL PEAK 22(12Q23.3) WILD-TYPE
  CLUS_1                            9                             27
  CLUS_2                            6                             18
  CLUS_3                            8                             43
  CLUS_4                           19                             44
  CLUS_5                            5                             33
  CLUS_6                            6                             11
  CLUS_7                           18                             46
  CLUS_8                            5                             24
  CLUS_9                            4                             11
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 23(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q34) MUTATED       38     23     24
  DEL PEAK 23(13Q34) WILD-TYPE    116     87     79
D43V1, multiclass
        clus
vv       DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE
  CLUS_1                         38                          116
  CLUS_2                         23                           87
  CLUS_3                         24                           79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(13Q34) MUTATED       27     33      7     18
  DEL PEAK 23(13Q34) WILD-TYPE     84     89     27     81
D43V2, multiclass
        clus
vv       DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE
  CLUS_1                         27                           84
  CLUS_2                         33                           89
  CLUS_3                          7                           27
  CLUS_4                         18                           81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(13Q34) MUTATED        9     17     13     12      8
  DEL PEAK 23(13Q34) WILD-TYPE     30     61     30     57     24
D43V3, multiclass
        clus
vv       DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE
  CLUS_1                          9                           30
  CLUS_2                         17                           61
  CLUS_3                         13                           30
  CLUS_4                         12                           57
  CLUS_5                          8                           24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q34) MUTATED       16     19     24
  DEL PEAK 23(13Q34) WILD-TYPE     70     65     67
D43V4, multiclass
        clus
vv       DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE
  CLUS_1                         16                           70
  CLUS_2                         19                           65
  CLUS_3                         24                           67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(13Q34) MUTATED       29     18     28     10
  DEL PEAK 23(13Q34) WILD-TYPE     87     55     77     63
D43V5, multiclass
        clus
vv       DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE
  CLUS_1                         29                           87
  CLUS_2                         18                           55
  CLUS_3                         28                           77
  CLUS_4                         10                           63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q34) MUTATED       20     39     26
  DEL PEAK 23(13Q34) WILD-TYPE     85    126     71
D43V6, multiclass
        clus
vv       DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE
  CLUS_1                         20                           85
  CLUS_2                         39                          126
  CLUS_3                         26                           71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(13Q34) MUTATED       27     23     21     10
  DEL PEAK 23(13Q34) WILD-TYPE     70     80     76     44
D43V7, multiclass
        clus
vv       DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE
  CLUS_1                         27                           70
  CLUS_2                         23                           80
  CLUS_3                         21                           76
  CLUS_4                         10                           44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(13Q34) MUTATED       27     23     25      6
  DEL PEAK 23(13Q34) WILD-TYPE    105     70     63     32
D43V8, multiclass
        clus
vv       DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE
  CLUS_1                         27                          105
  CLUS_2                         23                           70
  CLUS_3                         25                           63
  CLUS_4                          6                           32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q34) MUTATED       25     26     29
  DEL PEAK 23(13Q34) WILD-TYPE     60     93    104
D43V9, multiclass
        clus
vv       DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE
  CLUS_1                         25                           60
  CLUS_2                         26                           93
  CLUS_3                         29                          104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 23(13Q34) MUTATED        8      8     19      8      8      5     16
  DEL PEAK 23(13Q34) WILD-TYPE     28     16     32     55     30     12     48
                              vv
clus                           CLUS_8 CLUS_9
  DEL PEAK 23(13Q34) MUTATED        5      3
  DEL PEAK 23(13Q34) WILD-TYPE     24     12
D43V10, multiclass
        clus
vv       DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE
  CLUS_1                          8                           28
  CLUS_2                          8                           16
  CLUS_3                         19                           32
  CLUS_4                          8                           55
  CLUS_5                          8                           30
  CLUS_6                          5                           12
  CLUS_7                         16                           48
  CLUS_8                          5                           24
  CLUS_9                          3                           12
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 24(14Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(14Q23.3) MUTATED       58     45     17
  DEL PEAK 24(14Q23.3) WILD-TYPE     96     65     86
D44V1, multiclass
        clus
vv       DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  CLUS_1                           58                             96
  CLUS_2                           45                             65
  CLUS_3                           17                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(14Q23.3) MUTATED       33     35     12     40
  DEL PEAK 24(14Q23.3) WILD-TYPE     78     87     22     59
D44V2, multiclass
        clus
vv       DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  CLUS_1                           33                             78
  CLUS_2                           35                             87
  CLUS_3                           12                             22
  CLUS_4                           40                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(14Q23.3) MUTATED       10     26     11     25     10
  DEL PEAK 24(14Q23.3) WILD-TYPE     29     52     32     44     22
D44V3, multiclass
        clus
vv       DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  CLUS_1                           10                             29
  CLUS_2                           26                             52
  CLUS_3                           11                             32
  CLUS_4                           25                             44
  CLUS_5                           10                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(14Q23.3) MUTATED       37     19     26
  DEL PEAK 24(14Q23.3) WILD-TYPE     49     65     65
D44V4, multiclass
        clus
vv       DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  CLUS_1                           37                             49
  CLUS_2                           19                             65
  CLUS_3                           26                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(14Q23.3) MUTATED       28     26     47     19
  DEL PEAK 24(14Q23.3) WILD-TYPE     88     47     58     54
D44V5, multiclass
        clus
vv       DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  CLUS_1                           28                             88
  CLUS_2                           26                             47
  CLUS_3                           47                             58
  CLUS_4                           19                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(14Q23.3) MUTATED       28     50     42
  DEL PEAK 24(14Q23.3) WILD-TYPE     77    115     55
D44V6, multiclass
        clus
vv       DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  CLUS_1                           28                             77
  CLUS_2                           50                            115
  CLUS_3                           42                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(14Q23.3) MUTATED       36     22     35     18
  DEL PEAK 24(14Q23.3) WILD-TYPE     61     81     62     36
D44V7, multiclass
        clus
vv       DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  CLUS_1                           36                             61
  CLUS_2                           22                             81
  CLUS_3                           35                             62
  CLUS_4                           18                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(14Q23.3) MUTATED       38     32     26     15
  DEL PEAK 24(14Q23.3) WILD-TYPE     94     61     62     23
D44V8, multiclass
        clus
vv       DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  CLUS_1                           38                             94
  CLUS_2                           32                             61
  CLUS_3                           26                             62
  CLUS_4                           15                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(14Q23.3) MUTATED       28     44     35
  DEL PEAK 24(14Q23.3) WILD-TYPE     57     75     98
D44V9, multiclass
        clus
vv       DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  CLUS_1                           28                             57
  CLUS_2                           44                             75
  CLUS_3                           35                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(14Q23.3) MUTATED       12      8     15     14     17      8
  DEL PEAK 24(14Q23.3) WILD-TYPE     24     16     36     49     21      9
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 24(14Q23.3) MUTATED       17     11      5
  DEL PEAK 24(14Q23.3) WILD-TYPE     47     18     10
D44V10, multiclass
        clus
vv       DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  CLUS_1                           12                             24
  CLUS_2                            8                             16
  CLUS_3                           15                             36
  CLUS_4                           14                             49
  CLUS_5                           17                             21
  CLUS_6                            8                              9
  CLUS_7                           17                             47
  CLUS_8                           11                             18
  CLUS_9                            5                             10
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 25(14Q32.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(14Q32.31) MUTATED       57     44     16
  DEL PEAK 25(14Q32.31) WILD-TYPE     97     66     87
D45V1, multiclass
        clus
vv       DEL PEAK 25(14Q32.31) MUTATED DEL PEAK 25(14Q32.31) WILD-TYPE
  CLUS_1                            57                              97
  CLUS_2                            44                              66
  CLUS_3                            16                              87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(14Q32.31) MUTATED       31     32     13     41
  DEL PEAK 25(14Q32.31) WILD-TYPE     80     90     21     58
D45V2, multiclass
        clus
vv       DEL PEAK 25(14Q32.31) MUTATED DEL PEAK 25(14Q32.31) WILD-TYPE
  CLUS_1                            31                              80
  CLUS_2                            32                              90
  CLUS_3                            13                              21
  CLUS_4                            41                              58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(14Q32.31) MUTATED       10     27     11     26     10
  DEL PEAK 25(14Q32.31) WILD-TYPE     29     51     32     43     22
D45V3, multiclass
        clus
vv       DEL PEAK 25(14Q32.31) MUTATED DEL PEAK 25(14Q32.31) WILD-TYPE
  CLUS_1                            10                              29
  CLUS_2                            27                              51
  CLUS_3                            11                              32
  CLUS_4                            26                              43
  CLUS_5                            10                              22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(14Q32.31) MUTATED       37     21     26
  DEL PEAK 25(14Q32.31) WILD-TYPE     49     63     65
D45V4, multiclass
        clus
vv       DEL PEAK 25(14Q32.31) MUTATED DEL PEAK 25(14Q32.31) WILD-TYPE
  CLUS_1                            37                              49
  CLUS_2                            21                              63
  CLUS_3                            26                              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(14Q32.31) MUTATED       28     24     46     19
  DEL PEAK 25(14Q32.31) WILD-TYPE     88     49     59     54
D45V5, multiclass
        clus
vv       DEL PEAK 25(14Q32.31) MUTATED DEL PEAK 25(14Q32.31) WILD-TYPE
  CLUS_1                            28                              88
  CLUS_2                            24                              49
  CLUS_3                            46                              59
  CLUS_4                            19                              54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(14Q32.31) MUTATED       29     46     42
  DEL PEAK 25(14Q32.31) WILD-TYPE     76    119     55
D45V6, multiclass
        clus
vv       DEL PEAK 25(14Q32.31) MUTATED DEL PEAK 25(14Q32.31) WILD-TYPE
  CLUS_1                            29                              76
  CLUS_2                            46                             119
  CLUS_3                            42                              55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(14Q32.31) MUTATED       36     24     30     18
  DEL PEAK 25(14Q32.31) WILD-TYPE     61     79     67     36
D45V7, multiclass
        clus
vv       DEL PEAK 25(14Q32.31) MUTATED DEL PEAK 25(14Q32.31) WILD-TYPE
  CLUS_1                            36                              61
  CLUS_2                            24                              79
  CLUS_3                            30                              67
  CLUS_4                            18                              36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(14Q32.31) MUTATED       37     29     27     15
  DEL PEAK 25(14Q32.31) WILD-TYPE     95     64     61     23
D45V8, multiclass
        clus
vv       DEL PEAK 25(14Q32.31) MUTATED DEL PEAK 25(14Q32.31) WILD-TYPE
  CLUS_1                            37                              95
  CLUS_2                            29                              64
  CLUS_3                            27                              61
  CLUS_4                            15                              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(14Q32.31) MUTATED       28     41     36
  DEL PEAK 25(14Q32.31) WILD-TYPE     57     78     97
D45V9, multiclass
        clus
vv       DEL PEAK 25(14Q32.31) MUTATED DEL PEAK 25(14Q32.31) WILD-TYPE
  CLUS_1                            28                              57
  CLUS_2                            41                              78
  CLUS_3                            36                              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(14Q32.31) MUTATED       11      8     14     17     15     10
  DEL PEAK 25(14Q32.31) WILD-TYPE     25     16     37     46     23      7
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 25(14Q32.31) MUTATED       15     11      4
  DEL PEAK 25(14Q32.31) WILD-TYPE     49     18     11
D45V10, multiclass
        clus
vv       DEL PEAK 25(14Q32.31) MUTATED DEL PEAK 25(14Q32.31) WILD-TYPE
  CLUS_1                            11                              25
  CLUS_2                             8                              16
  CLUS_3                            14                              37
  CLUS_4                            17                              46
  CLUS_5                            15                              23
  CLUS_6                            10                               7
  CLUS_7                            15                              49
  CLUS_8                            11                              18
  CLUS_9                             4                              11
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 26(15Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(15Q13.3) MUTATED       42     26     16
  DEL PEAK 26(15Q13.3) WILD-TYPE    112     84     87
D46V1, multiclass
        clus
vv       DEL PEAK 26(15Q13.3) MUTATED DEL PEAK 26(15Q13.3) WILD-TYPE
  CLUS_1                           42                            112
  CLUS_2                           26                             84
  CLUS_3                           16                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(15Q13.3) MUTATED       24     20     12     28
  DEL PEAK 26(15Q13.3) WILD-TYPE     87    102     22     71
D46V2, multiclass
        clus
vv       DEL PEAK 26(15Q13.3) MUTATED DEL PEAK 26(15Q13.3) WILD-TYPE
  CLUS_1                           24                             87
  CLUS_2                           20                            102
  CLUS_3                           12                             22
  CLUS_4                           28                             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(15Q13.3) MUTATED        4     16     11     25      5
  DEL PEAK 26(15Q13.3) WILD-TYPE     35     62     32     44     27
D46V3, multiclass
        clus
vv       DEL PEAK 26(15Q13.3) MUTATED DEL PEAK 26(15Q13.3) WILD-TYPE
  CLUS_1                            4                             35
  CLUS_2                           16                             62
  CLUS_3                           11                             32
  CLUS_4                           25                             44
  CLUS_5                            5                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(15Q13.3) MUTATED       23     14     24
  DEL PEAK 26(15Q13.3) WILD-TYPE     63     70     67
D46V4, multiclass
        clus
vv       DEL PEAK 26(15Q13.3) MUTATED DEL PEAK 26(15Q13.3) WILD-TYPE
  CLUS_1                           23                             63
  CLUS_2                           14                             70
  CLUS_3                           24                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(15Q13.3) MUTATED       29     11     24     20
  DEL PEAK 26(15Q13.3) WILD-TYPE     87     62     81     53
D46V5, multiclass
        clus
vv       DEL PEAK 26(15Q13.3) MUTATED DEL PEAK 26(15Q13.3) WILD-TYPE
  CLUS_1                           29                             87
  CLUS_2                           11                             62
  CLUS_3                           24                             81
  CLUS_4                           20                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(15Q13.3) MUTATED       33     30     21
  DEL PEAK 26(15Q13.3) WILD-TYPE     72    135     76
D46V6, multiclass
        clus
vv       DEL PEAK 26(15Q13.3) MUTATED DEL PEAK 26(15Q13.3) WILD-TYPE
  CLUS_1                           33                             72
  CLUS_2                           30                            135
  CLUS_3                           21                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(15Q13.3) MUTATED       24     22     24     12
  DEL PEAK 26(15Q13.3) WILD-TYPE     73     81     73     42
D46V7, multiclass
        clus
vv       DEL PEAK 26(15Q13.3) MUTATED DEL PEAK 26(15Q13.3) WILD-TYPE
  CLUS_1                           24                             73
  CLUS_2                           22                             81
  CLUS_3                           24                             73
  CLUS_4                           12                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(15Q13.3) MUTATED       34     22     18      8
  DEL PEAK 26(15Q13.3) WILD-TYPE     98     71     70     30
D46V8, multiclass
        clus
vv       DEL PEAK 26(15Q13.3) MUTATED DEL PEAK 26(15Q13.3) WILD-TYPE
  CLUS_1                           34                             98
  CLUS_2                           22                             71
  CLUS_3                           18                             70
  CLUS_4                            8                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(15Q13.3) MUTATED       10     34     35
  DEL PEAK 26(15Q13.3) WILD-TYPE     75     85     98
D46V9, multiclass
        clus
vv       DEL PEAK 26(15Q13.3) MUTATED DEL PEAK 26(15Q13.3) WILD-TYPE
  CLUS_1                           10                             75
  CLUS_2                           34                             85
  CLUS_3                           35                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(15Q13.3) MUTATED        8      6      7     16      9      2
  DEL PEAK 26(15Q13.3) WILD-TYPE     28     18     44     47     29     15
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 26(15Q13.3) MUTATED       20      7      4
  DEL PEAK 26(15Q13.3) WILD-TYPE     44     22     11
D46V10, multiclass
        clus
vv       DEL PEAK 26(15Q13.3) MUTATED DEL PEAK 26(15Q13.3) WILD-TYPE
  CLUS_1                            8                             28
  CLUS_2                            6                             18
  CLUS_3                            7                             44
  CLUS_4                           16                             47
  CLUS_5                            9                             29
  CLUS_6                            2                             15
  CLUS_7                           20                             44
  CLUS_8                            7                             22
  CLUS_9                            4                             11
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 27(15Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(15Q21.1) MUTATED       46     28     17
  DEL PEAK 27(15Q21.1) WILD-TYPE    108     82     86
D47V1, multiclass
        clus
vv       DEL PEAK 27(15Q21.1) MUTATED DEL PEAK 27(15Q21.1) WILD-TYPE
  CLUS_1                           46                            108
  CLUS_2                           28                             82
  CLUS_3                           17                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(15Q21.1) MUTATED       25     25     11     30
  DEL PEAK 27(15Q21.1) WILD-TYPE     86     97     23     69
D47V2, multiclass
        clus
vv       DEL PEAK 27(15Q21.1) MUTATED DEL PEAK 27(15Q21.1) WILD-TYPE
  CLUS_1                           25                             86
  CLUS_2                           25                             97
  CLUS_3                           11                             23
  CLUS_4                           30                             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(15Q21.1) MUTATED        7     16     12     27      8
  DEL PEAK 27(15Q21.1) WILD-TYPE     32     62     31     42     24
D47V3, multiclass
        clus
vv       DEL PEAK 27(15Q21.1) MUTATED DEL PEAK 27(15Q21.1) WILD-TYPE
  CLUS_1                            7                             32
  CLUS_2                           16                             62
  CLUS_3                           12                             31
  CLUS_4                           27                             42
  CLUS_5                            8                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(15Q21.1) MUTATED       30     14     26
  DEL PEAK 27(15Q21.1) WILD-TYPE     56     70     65
D47V4, multiclass
        clus
vv       DEL PEAK 27(15Q21.1) MUTATED DEL PEAK 27(15Q21.1) WILD-TYPE
  CLUS_1                           30                             56
  CLUS_2                           14                             70
  CLUS_3                           26                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(15Q21.1) MUTATED       31     14     24     22
  DEL PEAK 27(15Q21.1) WILD-TYPE     85     59     81     51
D47V5, multiclass
        clus
vv       DEL PEAK 27(15Q21.1) MUTATED DEL PEAK 27(15Q21.1) WILD-TYPE
  CLUS_1                           31                             85
  CLUS_2                           14                             59
  CLUS_3                           24                             81
  CLUS_4                           22                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(15Q21.1) MUTATED       34     36     21
  DEL PEAK 27(15Q21.1) WILD-TYPE     71    129     76
D47V6, multiclass
        clus
vv       DEL PEAK 27(15Q21.1) MUTATED DEL PEAK 27(15Q21.1) WILD-TYPE
  CLUS_1                           34                             71
  CLUS_2                           36                            129
  CLUS_3                           21                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(15Q21.1) MUTATED       24     29     24     12
  DEL PEAK 27(15Q21.1) WILD-TYPE     73     74     73     42
D47V7, multiclass
        clus
vv       DEL PEAK 27(15Q21.1) MUTATED DEL PEAK 27(15Q21.1) WILD-TYPE
  CLUS_1                           24                             73
  CLUS_2                           29                             74
  CLUS_3                           24                             73
  CLUS_4                           12                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(15Q21.1) MUTATED       40     21     21      7
  DEL PEAK 27(15Q21.1) WILD-TYPE     92     72     67     31
D47V8, multiclass
        clus
vv       DEL PEAK 27(15Q21.1) MUTATED DEL PEAK 27(15Q21.1) WILD-TYPE
  CLUS_1                           40                             92
  CLUS_2                           21                             72
  CLUS_3                           21                             67
  CLUS_4                            7                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(15Q21.1) MUTATED       14     33     38
  DEL PEAK 27(15Q21.1) WILD-TYPE     71     86     95
D47V9, multiclass
        clus
vv       DEL PEAK 27(15Q21.1) MUTATED DEL PEAK 27(15Q21.1) WILD-TYPE
  CLUS_1                           14                             71
  CLUS_2                           33                             86
  CLUS_3                           38                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(15Q21.1) MUTATED       10      8      9     18      9      3
  DEL PEAK 27(15Q21.1) WILD-TYPE     26     16     42     45     29     14
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 27(15Q21.1) MUTATED       18      6      4
  DEL PEAK 27(15Q21.1) WILD-TYPE     46     23     11
D47V10, multiclass
        clus
vv       DEL PEAK 27(15Q21.1) MUTATED DEL PEAK 27(15Q21.1) WILD-TYPE
  CLUS_1                           10                             26
  CLUS_2                            8                             16
  CLUS_3                            9                             42
  CLUS_4                           18                             45
  CLUS_5                            9                             29
  CLUS_6                            3                             14
  CLUS_7                           18                             46
  CLUS_8                            6                             23
  CLUS_9                            4                             11
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 28(16P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(16P13.3) MUTATED       37     12     13
  DEL PEAK 28(16P13.3) WILD-TYPE    117     98     90
D48V1, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                           37                            117
  CLUS_2                           12                             98
  CLUS_3                           13                             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(16P13.3) MUTATED       26     16     10     10
  DEL PEAK 28(16P13.3) WILD-TYPE     85    106     24     89
D48V2, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                           26                             85
  CLUS_2                           16                            106
  CLUS_3                           10                             24
  CLUS_4                           10                             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(16P13.3) MUTATED        3     12      9     17      4
  DEL PEAK 28(16P13.3) WILD-TYPE     36     66     34     52     28
D48V3, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                            3                             36
  CLUS_2                           12                             66
  CLUS_3                            9                             34
  CLUS_4                           17                             52
  CLUS_5                            4                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(16P13.3) MUTATED       22     10     13
  DEL PEAK 28(16P13.3) WILD-TYPE     64     74     78
D48V4, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                           22                             64
  CLUS_2                           10                             74
  CLUS_3                           13                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(16P13.3) MUTATED       23      9     14     16
  DEL PEAK 28(16P13.3) WILD-TYPE     93     64     91     57
D48V5, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                           23                             93
  CLUS_2                            9                             64
  CLUS_3                           14                             91
  CLUS_4                           16                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(16P13.3) MUTATED       18     31     13
  DEL PEAK 28(16P13.3) WILD-TYPE     87    134     84
D48V6, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                           18                             87
  CLUS_2                           31                            134
  CLUS_3                           13                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(16P13.3) MUTATED       17     24     11      9
  DEL PEAK 28(16P13.3) WILD-TYPE     80     79     86     45
D48V7, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                           17                             80
  CLUS_2                           24                             79
  CLUS_3                           11                             86
  CLUS_4                            9                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(16P13.3) MUTATED       26     11     18      6
  DEL PEAK 28(16P13.3) WILD-TYPE    106     82     70     32
D48V8, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                           26                            106
  CLUS_2                           11                             82
  CLUS_3                           18                             70
  CLUS_4                            6                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(16P13.3) MUTATED       13     15     32
  DEL PEAK 28(16P13.3) WILD-TYPE     72    104    101
D48V9, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                           13                             72
  CLUS_2                           15                            104
  CLUS_3                           32                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(16P13.3) MUTATED        3      4     12     15      4      3
  DEL PEAK 28(16P13.3) WILD-TYPE     33     20     39     48     34     14
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 28(16P13.3) MUTATED        9      6      4
  DEL PEAK 28(16P13.3) WILD-TYPE     55     23     11
D48V10, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                            3                             33
  CLUS_2                            4                             20
  CLUS_3                           12                             39
  CLUS_4                           15                             48
  CLUS_5                            4                             34
  CLUS_6                            3                             14
  CLUS_7                            9                             55
  CLUS_8                            6                             23
  CLUS_9                            4                             11
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 29(16Q12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q12.1) MUTATED       78     16     23
  DEL PEAK 29(16Q12.1) WILD-TYPE     76     94     80
D49V1, multiclass
        clus
vv       DEL PEAK 29(16Q12.1) MUTATED DEL PEAK 29(16Q12.1) WILD-TYPE
  CLUS_1                           78                             76
  CLUS_2                           16                             94
  CLUS_3                           23                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(16Q12.1) MUTATED       44     33     14     26
  DEL PEAK 29(16Q12.1) WILD-TYPE     67     89     20     73
D49V2, multiclass
        clus
vv       DEL PEAK 29(16Q12.1) MUTATED DEL PEAK 29(16Q12.1) WILD-TYPE
  CLUS_1                           44                             67
  CLUS_2                           33                             89
  CLUS_3                           14                             20
  CLUS_4                           26                             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(16Q12.1) MUTATED       10     21     19     29      8
  DEL PEAK 29(16Q12.1) WILD-TYPE     29     57     24     40     24
D49V3, multiclass
        clus
vv       DEL PEAK 29(16Q12.1) MUTATED DEL PEAK 29(16Q12.1) WILD-TYPE
  CLUS_1                           10                             29
  CLUS_2                           21                             57
  CLUS_3                           19                             24
  CLUS_4                           29                             40
  CLUS_5                            8                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q12.1) MUTATED       31     24     32
  DEL PEAK 29(16Q12.1) WILD-TYPE     55     60     59
D49V4, multiclass
        clus
vv       DEL PEAK 29(16Q12.1) MUTATED DEL PEAK 29(16Q12.1) WILD-TYPE
  CLUS_1                           31                             55
  CLUS_2                           24                             60
  CLUS_3                           32                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(16Q12.1) MUTATED       45     21     24     27
  DEL PEAK 29(16Q12.1) WILD-TYPE     71     52     81     46
D49V5, multiclass
        clus
vv       DEL PEAK 29(16Q12.1) MUTATED DEL PEAK 29(16Q12.1) WILD-TYPE
  CLUS_1                           45                             71
  CLUS_2                           21                             52
  CLUS_3                           24                             81
  CLUS_4                           27                             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q12.1) MUTATED       35     58     24
  DEL PEAK 29(16Q12.1) WILD-TYPE     70    107     73
D49V6, multiclass
        clus
vv       DEL PEAK 29(16Q12.1) MUTATED DEL PEAK 29(16Q12.1) WILD-TYPE
  CLUS_1                           35                             70
  CLUS_2                           58                            107
  CLUS_3                           24                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(16Q12.1) MUTATED       34     39     27     12
  DEL PEAK 29(16Q12.1) WILD-TYPE     63     64     70     42
D49V7, multiclass
        clus
vv       DEL PEAK 29(16Q12.1) MUTATED DEL PEAK 29(16Q12.1) WILD-TYPE
  CLUS_1                           34                             63
  CLUS_2                           39                             64
  CLUS_3                           27                             70
  CLUS_4                           12                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(16Q12.1) MUTATED       43     24     37      8
  DEL PEAK 29(16Q12.1) WILD-TYPE     89     69     51     30
D49V8, multiclass
        clus
vv       DEL PEAK 29(16Q12.1) MUTATED DEL PEAK 29(16Q12.1) WILD-TYPE
  CLUS_1                           43                             89
  CLUS_2                           24                             69
  CLUS_3                           37                             51
  CLUS_4                            8                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q12.1) MUTATED       27     32     47
  DEL PEAK 29(16Q12.1) WILD-TYPE     58     87     86
D49V9, multiclass
        clus
vv       DEL PEAK 29(16Q12.1) MUTATED DEL PEAK 29(16Q12.1) WILD-TYPE
  CLUS_1                           27                             58
  CLUS_2                           32                             87
  CLUS_3                           47                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(16Q12.1) MUTATED       10      7     24     21      6      5
  DEL PEAK 29(16Q12.1) WILD-TYPE     26     17     27     42     32     12
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 29(16Q12.1) MUTATED       21      6      6
  DEL PEAK 29(16Q12.1) WILD-TYPE     43     23      9
D49V10, multiclass
        clus
vv       DEL PEAK 29(16Q12.1) MUTATED DEL PEAK 29(16Q12.1) WILD-TYPE
  CLUS_1                           10                             26
  CLUS_2                            7                             17
  CLUS_3                           24                             27
  CLUS_4                           21                             42
  CLUS_5                            6                             32
  CLUS_6                            5                             12
  CLUS_7                           21                             43
  CLUS_8                            6                             23
  CLUS_9                            6                              9
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 30(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(16Q23.1) MUTATED       79     16     25
  DEL PEAK 30(16Q23.1) WILD-TYPE     75     94     78
D50V1, multiclass
        clus
vv       DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE
  CLUS_1                           79                             75
  CLUS_2                           16                             94
  CLUS_3                           25                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(16Q23.1) MUTATED       47     34     13     26
  DEL PEAK 30(16Q23.1) WILD-TYPE     64     88     21     73
D50V2, multiclass
        clus
vv       DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE
  CLUS_1                           47                             64
  CLUS_2                           34                             88
  CLUS_3                           13                             21
  CLUS_4                           26                             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(16Q23.1) MUTATED        8     22     20     29     10
  DEL PEAK 30(16Q23.1) WILD-TYPE     31     56     23     40     22
D50V3, multiclass
        clus
vv       DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE
  CLUS_1                            8                             31
  CLUS_2                           22                             56
  CLUS_3                           20                             23
  CLUS_4                           29                             40
  CLUS_5                           10                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(16Q23.1) MUTATED       31     23     35
  DEL PEAK 30(16Q23.1) WILD-TYPE     55     61     56
D50V4, multiclass
        clus
vv       DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE
  CLUS_1                           31                             55
  CLUS_2                           23                             61
  CLUS_3                           35                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(16Q23.1) MUTATED       48     23     23     26
  DEL PEAK 30(16Q23.1) WILD-TYPE     68     50     82     47
D50V5, multiclass
        clus
vv       DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE
  CLUS_1                           48                             68
  CLUS_2                           23                             50
  CLUS_3                           23                             82
  CLUS_4                           26                             47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(16Q23.1) MUTATED       35     62     23
  DEL PEAK 30(16Q23.1) WILD-TYPE     70    103     74
D50V6, multiclass
        clus
vv       DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE
  CLUS_1                           35                             70
  CLUS_2                           62                            103
  CLUS_3                           23                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(16Q23.1) MUTATED       32     41     27     15
  DEL PEAK 30(16Q23.1) WILD-TYPE     65     62     70     39
D50V7, multiclass
        clus
vv       DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE
  CLUS_1                           32                             65
  CLUS_2                           41                             62
  CLUS_3                           27                             70
  CLUS_4                           15                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(16Q23.1) MUTATED       44     26     37      8
  DEL PEAK 30(16Q23.1) WILD-TYPE     88     67     51     30
D50V8, multiclass
        clus
vv       DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE
  CLUS_1                           44                             88
  CLUS_2                           26                             67
  CLUS_3                           37                             51
  CLUS_4                            8                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(16Q23.1) MUTATED       29     31     50
  DEL PEAK 30(16Q23.1) WILD-TYPE     56     88     83
D50V9, multiclass
        clus
vv       DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE
  CLUS_1                           29                             56
  CLUS_2                           31                             88
  CLUS_3                           50                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(16Q23.1) MUTATED       12      9     24     20      6      5
  DEL PEAK 30(16Q23.1) WILD-TYPE     24     15     27     43     32     12
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 30(16Q23.1) MUTATED       21      6      7
  DEL PEAK 30(16Q23.1) WILD-TYPE     43     23      8
D50V10, multiclass
        clus
vv       DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE
  CLUS_1                           12                             24
  CLUS_2                            9                             15
  CLUS_3                           24                             27
  CLUS_4                           20                             43
  CLUS_5                            6                             32
  CLUS_6                            5                             12
  CLUS_7                           21                             43
  CLUS_8                            6                             23
  CLUS_9                            7                              8
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 31(16Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(16Q24.3) MUTATED       85     19     29
  DEL PEAK 31(16Q24.3) WILD-TYPE     69     91     74
D51V1, multiclass
        clus
vv       DEL PEAK 31(16Q24.3) MUTATED DEL PEAK 31(16Q24.3) WILD-TYPE
  CLUS_1                           85                             69
  CLUS_2                           19                             91
  CLUS_3                           29                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(16Q24.3) MUTATED       49     39     15     30
  DEL PEAK 31(16Q24.3) WILD-TYPE     62     83     19     69
D51V2, multiclass
        clus
vv       DEL PEAK 31(16Q24.3) MUTATED DEL PEAK 31(16Q24.3) WILD-TYPE
  CLUS_1                           49                             62
  CLUS_2                           39                             83
  CLUS_3                           15                             19
  CLUS_4                           30                             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(16Q24.3) MUTATED        9     25     22     30      9
  DEL PEAK 31(16Q24.3) WILD-TYPE     30     53     21     39     23
D51V3, multiclass
        clus
vv       DEL PEAK 31(16Q24.3) MUTATED DEL PEAK 31(16Q24.3) WILD-TYPE
  CLUS_1                            9                             30
  CLUS_2                           25                             53
  CLUS_3                           22                             21
  CLUS_4                           30                             39
  CLUS_5                            9                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(16Q24.3) MUTATED       31     27     37
  DEL PEAK 31(16Q24.3) WILD-TYPE     55     57     54
D51V4, multiclass
        clus
vv       DEL PEAK 31(16Q24.3) MUTATED DEL PEAK 31(16Q24.3) WILD-TYPE
  CLUS_1                           31                             55
  CLUS_2                           27                             57
  CLUS_3                           37                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(16Q24.3) MUTATED       52     25     27     29
  DEL PEAK 31(16Q24.3) WILD-TYPE     64     48     78     44
D51V5, multiclass
        clus
vv       DEL PEAK 31(16Q24.3) MUTATED DEL PEAK 31(16Q24.3) WILD-TYPE
  CLUS_1                           52                             64
  CLUS_2                           25                             48
  CLUS_3                           27                             78
  CLUS_4                           29                             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(16Q24.3) MUTATED       38     70     25
  DEL PEAK 31(16Q24.3) WILD-TYPE     67     95     72
D51V6, multiclass
        clus
vv       DEL PEAK 31(16Q24.3) MUTATED DEL PEAK 31(16Q24.3) WILD-TYPE
  CLUS_1                           38                             67
  CLUS_2                           70                             95
  CLUS_3                           25                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(16Q24.3) MUTATED       35     45     31     16
  DEL PEAK 31(16Q24.3) WILD-TYPE     62     58     66     38
D51V7, multiclass
        clus
vv       DEL PEAK 31(16Q24.3) MUTATED DEL PEAK 31(16Q24.3) WILD-TYPE
  CLUS_1                           35                             62
  CLUS_2                           45                             58
  CLUS_3                           31                             66
  CLUS_4                           16                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(16Q24.3) MUTATED       53     28     37      9
  DEL PEAK 31(16Q24.3) WILD-TYPE     79     65     51     29
D51V8, multiclass
        clus
vv       DEL PEAK 31(16Q24.3) MUTATED DEL PEAK 31(16Q24.3) WILD-TYPE
  CLUS_1                           53                             79
  CLUS_2                           28                             65
  CLUS_3                           37                             51
  CLUS_4                            9                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(16Q24.3) MUTATED       32     33     55
  DEL PEAK 31(16Q24.3) WILD-TYPE     53     86     78
D51V9, multiclass
        clus
vv       DEL PEAK 31(16Q24.3) MUTATED DEL PEAK 31(16Q24.3) WILD-TYPE
  CLUS_1                           32                             53
  CLUS_2                           33                             86
  CLUS_3                           55                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(16Q24.3) MUTATED       12     10     24     24      8      5
  DEL PEAK 31(16Q24.3) WILD-TYPE     24     14     27     39     30     12
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 31(16Q24.3) MUTATED       24      6      7
  DEL PEAK 31(16Q24.3) WILD-TYPE     40     23      8
D51V10, multiclass
        clus
vv       DEL PEAK 31(16Q24.3) MUTATED DEL PEAK 31(16Q24.3) WILD-TYPE
  CLUS_1                           12                             24
  CLUS_2                           10                             14
  CLUS_3                           24                             27
  CLUS_4                           24                             39
  CLUS_5                            8                             30
  CLUS_6                            5                             12
  CLUS_7                           24                             40
  CLUS_8                            6                             23
  CLUS_9                            7                              8
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 32(17P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(17P13.3) MUTATED       56     43     35
  DEL PEAK 32(17P13.3) WILD-TYPE     98     67     68
D52V1, multiclass
        clus
vv       DEL PEAK 32(17P13.3) MUTATED DEL PEAK 32(17P13.3) WILD-TYPE
  CLUS_1                           56                             98
  CLUS_2                           43                             67
  CLUS_3                           35                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(17P13.3) MUTATED       48     45     10     31
  DEL PEAK 32(17P13.3) WILD-TYPE     63     77     24     68
D52V2, multiclass
        clus
vv       DEL PEAK 32(17P13.3) MUTATED DEL PEAK 32(17P13.3) WILD-TYPE
  CLUS_1                           48                             63
  CLUS_2                           45                             77
  CLUS_3                           10                             24
  CLUS_4                           31                             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(17P13.3) MUTATED       11     38     21     22     12
  DEL PEAK 32(17P13.3) WILD-TYPE     28     40     22     47     20
D52V3, multiclass
        clus
vv       DEL PEAK 32(17P13.3) MUTATED DEL PEAK 32(17P13.3) WILD-TYPE
  CLUS_1                           11                             28
  CLUS_2                           38                             40
  CLUS_3                           21                             22
  CLUS_4                           22                             47
  CLUS_5                           12                             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(17P13.3) MUTATED       28     43     33
  DEL PEAK 32(17P13.3) WILD-TYPE     58     41     58
D52V4, multiclass
        clus
vv       DEL PEAK 32(17P13.3) MUTATED DEL PEAK 32(17P13.3) WILD-TYPE
  CLUS_1                           28                             58
  CLUS_2                           43                             41
  CLUS_3                           33                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(17P13.3) MUTATED       51     22     37     24
  DEL PEAK 32(17P13.3) WILD-TYPE     65     51     68     49
D52V5, multiclass
        clus
vv       DEL PEAK 32(17P13.3) MUTATED DEL PEAK 32(17P13.3) WILD-TYPE
  CLUS_1                           51                             65
  CLUS_2                           22                             51
  CLUS_3                           37                             68
  CLUS_4                           24                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(17P13.3) MUTATED       39     65     30
  DEL PEAK 32(17P13.3) WILD-TYPE     66    100     67
D52V6, multiclass
        clus
vv       DEL PEAK 32(17P13.3) MUTATED DEL PEAK 32(17P13.3) WILD-TYPE
  CLUS_1                           39                             66
  CLUS_2                           65                            100
  CLUS_3                           30                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(17P13.3) MUTATED       36     35     38     18
  DEL PEAK 32(17P13.3) WILD-TYPE     61     68     59     36
D52V7, multiclass
        clus
vv       DEL PEAK 32(17P13.3) MUTATED DEL PEAK 32(17P13.3) WILD-TYPE
  CLUS_1                           36                             61
  CLUS_2                           35                             68
  CLUS_3                           38                             59
  CLUS_4                           18                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(17P13.3) MUTATED       52     33     33      9
  DEL PEAK 32(17P13.3) WILD-TYPE     80     60     55     29
D52V8, multiclass
        clus
vv       DEL PEAK 32(17P13.3) MUTATED DEL PEAK 32(17P13.3) WILD-TYPE
  CLUS_1                           52                             80
  CLUS_2                           33                             60
  CLUS_3                           33                             55
  CLUS_4                            9                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(17P13.3) MUTATED       32     38     54
  DEL PEAK 32(17P13.3) WILD-TYPE     53     81     79
D52V9, multiclass
        clus
vv       DEL PEAK 32(17P13.3) MUTATED DEL PEAK 32(17P13.3) WILD-TYPE
  CLUS_1                           32                             53
  CLUS_2                           38                             81
  CLUS_3                           54                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(17P13.3) MUTATED       17      9     23     21     13      4
  DEL PEAK 32(17P13.3) WILD-TYPE     19     15     28     42     25     13
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 32(17P13.3) MUTATED       21      7      9
  DEL PEAK 32(17P13.3) WILD-TYPE     43     22      6
D52V10, multiclass
        clus
vv       DEL PEAK 32(17P13.3) MUTATED DEL PEAK 32(17P13.3) WILD-TYPE
  CLUS_1                           17                             19
  CLUS_2                            9                             15
  CLUS_3                           23                             28
  CLUS_4                           21                             42
  CLUS_5                           13                             25
  CLUS_6                            4                             13
  CLUS_7                           21                             43
  CLUS_8                            7                             22
  CLUS_9                            9                              6
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 33(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(19P13.3) MUTATED       50     36     18
  DEL PEAK 33(19P13.3) WILD-TYPE    104     74     85
D53V1, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                           50                            104
  CLUS_2                           36                             74
  CLUS_3                           18                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(19P13.3) MUTATED       37     32     12     23
  DEL PEAK 33(19P13.3) WILD-TYPE     74     90     22     76
D53V2, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                           37                             74
  CLUS_2                           32                             90
  CLUS_3                           12                             22
  CLUS_4                           23                             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(19P13.3) MUTATED       11     23     12     17     16
  DEL PEAK 33(19P13.3) WILD-TYPE     28     55     31     52     16
D53V3, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                           11                             28
  CLUS_2                           23                             55
  CLUS_3                           12                             31
  CLUS_4                           17                             52
  CLUS_5                           16                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(19P13.3) MUTATED       20     28     31
  DEL PEAK 33(19P13.3) WILD-TYPE     66     56     60
D53V4, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                           20                             66
  CLUS_2                           28                             56
  CLUS_3                           31                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(19P13.3) MUTATED       51     16     18     19
  DEL PEAK 33(19P13.3) WILD-TYPE     65     57     87     54
D53V5, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                           51                             65
  CLUS_2                           16                             57
  CLUS_3                           18                             87
  CLUS_4                           19                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(19P13.3) MUTATED       36     47     21
  DEL PEAK 33(19P13.3) WILD-TYPE     69    118     76
D53V6, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                           36                             69
  CLUS_2                           47                            118
  CLUS_3                           21                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(19P13.3) MUTATED       34     31     24     13
  DEL PEAK 33(19P13.3) WILD-TYPE     63     72     73     41
D53V7, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                           34                             63
  CLUS_2                           31                             72
  CLUS_3                           24                             73
  CLUS_4                           13                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(19P13.3) MUTATED       33     24     35     10
  DEL PEAK 33(19P13.3) WILD-TYPE     99     69     53     28
D53V8, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                           33                             99
  CLUS_2                           24                             69
  CLUS_3                           35                             53
  CLUS_4                           10                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(19P13.3) MUTATED       28     31     40
  DEL PEAK 33(19P13.3) WILD-TYPE     57     88     93
D53V9, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                           28                             57
  CLUS_2                           31                             88
  CLUS_3                           40                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(19P13.3) MUTATED        9     11     21     18      6      4
  DEL PEAK 33(19P13.3) WILD-TYPE     27     13     30     45     32     13
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 33(19P13.3) MUTATED       18      8      4
  DEL PEAK 33(19P13.3) WILD-TYPE     46     21     11
D53V10, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                            9                             27
  CLUS_2                           11                             13
  CLUS_3                           21                             30
  CLUS_4                           18                             45
  CLUS_5                            6                             32
  CLUS_6                            4                             13
  CLUS_7                           18                             46
  CLUS_8                            8                             21
  CLUS_9                            4                             11
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 34(XP21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(XP21.1) MUTATED       34     35     17
  DEL PEAK 34(XP21.1) WILD-TYPE    120     75     86
D54V1, multiclass
        clus
vv       DEL PEAK 34(XP21.1) MUTATED DEL PEAK 34(XP21.1) WILD-TYPE
  CLUS_1                          34                           120
  CLUS_2                          35                            75
  CLUS_3                          17                            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(XP21.1) MUTATED       38     12     11     25
  DEL PEAK 34(XP21.1) WILD-TYPE     73    110     23     74
D54V2, multiclass
        clus
vv       DEL PEAK 34(XP21.1) MUTATED DEL PEAK 34(XP21.1) WILD-TYPE
  CLUS_1                          38                            73
  CLUS_2                          12                           110
  CLUS_3                          11                            23
  CLUS_4                          25                            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(XP21.1) MUTATED        4     14     12     17     10
  DEL PEAK 34(XP21.1) WILD-TYPE     35     64     31     52     22
D54V3, multiclass
        clus
vv       DEL PEAK 34(XP21.1) MUTATED DEL PEAK 34(XP21.1) WILD-TYPE
  CLUS_1                           4                            35
  CLUS_2                          14                            64
  CLUS_3                          12                            31
  CLUS_4                          17                            52
  CLUS_5                          10                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(XP21.1) MUTATED       15     17     25
  DEL PEAK 34(XP21.1) WILD-TYPE     71     67     66
D54V4, multiclass
        clus
vv       DEL PEAK 34(XP21.1) MUTATED DEL PEAK 34(XP21.1) WILD-TYPE
  CLUS_1                          15                            71
  CLUS_2                          17                            67
  CLUS_3                          25                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(XP21.1) MUTATED       34      7     27     18
  DEL PEAK 34(XP21.1) WILD-TYPE     82     66     78     55
D54V5, multiclass
        clus
vv       DEL PEAK 34(XP21.1) MUTATED DEL PEAK 34(XP21.1) WILD-TYPE
  CLUS_1                          34                            82
  CLUS_2                           7                            66
  CLUS_3                          27                            78
  CLUS_4                          18                            55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(XP21.1) MUTATED       34     26     26
  DEL PEAK 34(XP21.1) WILD-TYPE     71    139     71
D54V6, multiclass
        clus
vv       DEL PEAK 34(XP21.1) MUTATED DEL PEAK 34(XP21.1) WILD-TYPE
  CLUS_1                          34                            71
  CLUS_2                          26                           139
  CLUS_3                          26                            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(XP21.1) MUTATED       22     37     16      7
  DEL PEAK 34(XP21.1) WILD-TYPE     75     66     81     47
D54V7, multiclass
        clus
vv       DEL PEAK 34(XP21.1) MUTATED DEL PEAK 34(XP21.1) WILD-TYPE
  CLUS_1                          22                            75
  CLUS_2                          37                            66
  CLUS_3                          16                            81
  CLUS_4                           7                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(XP21.1) MUTATED       39     15     24      4
  DEL PEAK 34(XP21.1) WILD-TYPE     93     78     64     34
D54V8, multiclass
        clus
vv       DEL PEAK 34(XP21.1) MUTATED DEL PEAK 34(XP21.1) WILD-TYPE
  CLUS_1                          39                            93
  CLUS_2                          15                            78
  CLUS_3                          24                            64
  CLUS_4                           4                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(XP21.1) MUTATED       16     21     40
  DEL PEAK 34(XP21.1) WILD-TYPE     69     98     93
D54V9, multiclass
        clus
vv       DEL PEAK 34(XP21.1) MUTATED DEL PEAK 34(XP21.1) WILD-TYPE
  CLUS_1                          16                            69
  CLUS_2                          21                            98
  CLUS_3                          40                            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(XP21.1) MUTATED        6      8      8     23      3      9
  DEL PEAK 34(XP21.1) WILD-TYPE     30     16     43     40     35      8
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 34(XP21.1) MUTATED       11      4      5
  DEL PEAK 34(XP21.1) WILD-TYPE     53     25     10
D54V10, multiclass
        clus
vv       DEL PEAK 34(XP21.1) MUTATED DEL PEAK 34(XP21.1) WILD-TYPE
  CLUS_1                           6                            30
  CLUS_2                           8                            16
  CLUS_3                           8                            43
  CLUS_4                          23                            40
  CLUS_5                           3                            35
  CLUS_6                           9                             8
  CLUS_7                          11                            53
  CLUS_8                           4                            25
  CLUS_9                           5                            10
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
