| GDAC_clinicalDataPicker1 stage2File | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataMerger/BRCA/1668808/0.GDAC_clinicalDataMerger.Finished/BRCA.clin.merged.txt |
| GDAC_clinicalDataPicker1 selectFile | file:/xchip/cga/reference/tcga/clinical/2012_08_22/stage3_params_clin_brca.tsv |
| GDAC_clinicalDataPicker1 nodeColumn | 1 |
| GDAC_clinicalDataPicker1 outPrefix | BRCA |
| Execution Times: | |
| Submitted: | 15:20:05 25-08-12 |
| Completed: | |
| Elapsed: | 00 hrs 01 mins 38 secs |
step 1. GDAC_clinicalDataPicker [id: 156300] Picks out the clinical paramters of interest
urn:lsid:broadinstitute.org:cancer.genome.analysis:00312:26
| stage2File | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataMerger/BRCA/1668808/0.GDAC_clinicalDataMerger.Finished/BRCA.clin.merged.txt |
| selectFile | file:/xchip/cga/reference/tcga/clinical/2012_08_22/stage3_params_clin_brca.tsv |
| nodeColumn | 1 |
| outPrefix | BRCA |
| Output Files: | |
| BRCA.clin.merged.picked.txt | |
| .lsf.out | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 15:20:05 25-08-12 |
| Completed: | 15:21:12 25-08-12 |
| Elapsed: | 00 hrs 01 mins 07 secs |
step 2. GDAC_clinicalDataPickerReport [id: 156301] Clinical data report
urn:lsid:broadinstitute.org:cancer.genome.analysis:00330:50
| picked | BRCA.clin.merged.picked.txt |
| Execution Times: | |
| Submitted: | 15:20:05 25-08-12 |
| Completed: | 15:21:42 25-08-12 |
| Elapsed: | 00 hrs 01 mins 37 secs |