SKCM-TM: Correlation between mRNAseq expression and clinical features
Maintained by Juok Cho (Broad Institute)
- Overview
+ Introduction
- Summary

Testing the association between 18101 genes and 3 clinical features across 124 samples, statistically thresholded by Q value < 0.05, 2 clinical features related to at least one genes.

  • 3 genes correlated to 'AGE'.

    • F7|2155 ,  XCL2|6846 ,  FAM19A5|25817

  • 16 genes correlated to 'GENDER'.

    • ZFY|7544 ,  XIST|7503 ,  PRKY|5616 ,  RPS4Y1|6192 ,  DDX3Y|8653 ,  ...

  • No genes correlated to 'Time to Death'

- Results
- Overview of the results

Complete statistical result table is provided in Supplement Table 1

Table 1.  Get Full Table This table shows the clinical features, statistical methods used, and the number of genes that are significantly associated with each clinical feature at Q value < 0.05.

Clinical feature Statistical test Significant genes Associated with                 Associated with
Time to Death Cox regression test   N=0        
AGE Spearman correlation test N=3 older N=0 younger N=3
GENDER t test N=16 male N=12 female N=4
+ Methods & Data
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