Skin Cutaneous Melanoma: Correlation between mRNAseq expression and clinical features
Maintained by Juok Cho (Broad Institute)
- Overview
+ Introduction
- Summary

Testing the association between 18092 genes and 3 clinical features across 141 samples, statistically thresholded by Q value < 0.05, 3 clinical features related to at least one genes.

  • 4 genes correlated to 'Time to Death'.

    • DNAJB9|4189 ,  ZNF25|219749 ,  PRKAR2B|5577 ,  EID1|23741

  • 1 gene correlated to 'AGE'.

    • ACOX2|8309

  • 17 genes correlated to 'GENDER'.

    • ZFY|7544 ,  XIST|7503 ,  PRKY|5616 ,  RPS4Y1|6192 ,  CYORF15B|84663 ,  ...

- Results
- Overview of the results

Complete statistical result table is provided in Supplement Table 1

Table 1.  Get Full Table This table shows the clinical features, statistical methods used, and the number of genes that are significantly associated with each clinical feature at Q value < 0.05.

Clinical feature Statistical test Significant genes Associated with                 Associated with
Time to Death Cox regression test N=4 shorter survival N=0 longer survival N=4
AGE Spearman correlation test N=1 older N=0 younger N=1
GENDER t test N=17 male N=12 female N=5
+ Methods & Data
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