Broad GDAC Analyses Status
awg_tcga-brca__2018_06_13 Run for Tumor Type: TCGA-BRCA

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PipelineNotRunInProcessSuccessfulUnsuccessful
1CopyNumber_Clustering_CNMF0100
2CopyNumber_Clustering_CNMF_thresholded0010
3CopyNumber_Gistic20010
4CopyNumber_Gistic2_Postprocess_Focal0010
5Correlate_Clinical_vs_CopyNumber_Arm0010
6Correlate_Clinical_vs_CopyNumber_Focal0010
7Correlate_Clinical_vs_mRNA0010
8Correlate_Clinical_vs_Mutation0010
9Correlate_Clinical_vs_Mutation_APOBEC_Categorical0010
10Correlate_Clinical_vs_Mutation_APOBEC_Continuous0010
11Correlate_Clinical_vs_MutationRate0010
12Methylation__HM27_Clustering_CNMF0010
13Methylation__HM27_Clustering_Consensus_Plus0001
14Methylation__HM27_Preprocess0010
15Methylation__HM450_Clustering_CNMF0010
16Methylation__HM450_Clustering_Consensus_Plus0010
17Methylation__HM450_Preprocess0010
18miR_Find_Direct_Targets0010
19miR_Mature_Clustering_CNMF0100
20miR_Mature_Clustering_Consensus_Plus0010
21miR_Mature_Preprocess0010
22mRNA_lincRNA_Clustering_CNMF0100
23mRNA_lincRNA_Clustering_Consensus_Plus0010
24mRNA_protein_coding_Clustering_CNMF0100
25mRNA_protein_coding_Clustering_Consensus_Plus0010
26Mutation_APOBEC0010
27Mutation_Assessor0010
28Mutation_MutSig2CV0010
29Mutation_Signature_Analyzer0010
Total04241

CohortBCRClinicalCNmRNAmiRMAFMethylation
TCGA-BRCA1097109610941085107810441094
TCGA-BRCA-FFPE121261212116
TCGA-BRCA-NB9769769770000
TCGA-BRCA-NT1621621341131040123
TCGA-BRCA-TM7777777
TCGA-BRCA-TP1097109610941085107810441094

This page generated on Thu Jun 21 13:35:42 2018