Thyroid Adenocarcinoma: Correlation between copy number variation genes and selected clinical features
Maintained by TCGA GDAC Team (Broad Institute/Dana-Farber Cancer Institute/Harvard Medical School)
- Overview
+ Introduction
- Summary

Testing the association between copy number variation of 11 peak regions and 6 clinical features across 206 patients, one significant finding detected with Q value < 0.25.

  • Del Peak 9(10q23.31) cnvs correlated to 'HISTOLOGICAL.TYPE'.

- Results
- Overview of the results

Table 1.  Get Full Table Overview of the association between significant copy number variation of 11 regions and 6 clinical features. Shown in the table are P values (Q values). Thresholded by Q value < 0.25, one significant finding detected.

Clinical
Features 		Time
to
Death 		AGE GENDER HISTOLOGICAL
TYPE 		RADIATIONS
RADIATION
REGIMENINDICATION 		NEOADJUVANT
THERAPY
nCNV (%) nWild-Type logrank test t-test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test
Del Peak 9(10q23 31) 7 (3%) 199 1
(1.00) 		0.0531
(1.00) 		0.377
(1.00) 		0.0021
(0.139) 		1
(1.00) 		1
(1.00)
Del Peak 2(2p22 3) 8 (4%) 198 1
(1.00) 		0.154
(1.00) 		0.683
(1.00) 		0.217
(1.00) 		1
(1.00) 		1
(1.00)
Del Peak 3(2q37 2) 7 (3%) 199 1
(1.00) 		0.00831
(0.532) 		0.68
(1.00) 		0.00693
(0.45) 		1
(1.00) 		1
(1.00)
Del Peak 4(6q22 31) 4 (2%) 202 0.0143
(0.887) 		0.196
(1.00) 		1
(1.00) 		0.793
(1.00) 		0.247
(1.00) 		1
(1.00)
Del Peak 6(8q24 22) 4 (2%) 202 1
(1.00) 		0.0353
(1.00) 		0.273
(1.00) 		0.147
(1.00) 		1
(1.00) 		1
(1.00)
Del Peak 8(9q22 32) 5 (2%) 201 1
(1.00) 		0.0402
(1.00) 		1
(1.00) 		0.181
(1.00) 		0.299
(1.00) 		1
(1.00)
Del Peak 10(13q21 1) 10 (5%) 196 0.0143
(0.887) 		0.407
(1.00) 		0.72
(1.00) 		0.0667
(1.00) 		0.141
(1.00) 		1
(1.00)
Del Peak 14(17p13 1) 3 (1%) 203 1
(1.00) 		0.846
(1.00) 		0.571
(1.00) 		0.55
(1.00) 		0.0124
(0.783) 		1
(1.00)
Del Peak 16(22q13 2) 39 (19%) 167 0.683
(1.00) 		0.954
(1.00) 		1
(1.00) 		0.444
(1.00) 		0.477
(1.00) 		1
(1.00)
Del Peak 17(22q13 31) 39 (19%) 167 0.683
(1.00) 		0.954
(1.00) 		1
(1.00) 		0.444
(1.00) 		0.477
(1.00) 		1
(1.00)
Del Peak 18(Xq22 3) 3 (1%) 203 1
(1.00) 		0.137
(1.00) 		0.163
(1.00) 		0.0914
(1.00) 		1
(1.00) 		1
(1.00)
+ Methods & Data
Copyright © 2012 Broad Institute TCGA GDAC as part of the TCGA Research Network. All rights reserved.
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