Broad GDAC Analyses Status
dev Run for Tumor Type: KIRC

CohortBCRClinicalCNLowPMethylationmRNAmRNASeqmiRmiRSeqRPPAMAFrawMAF
KIRC5375375280535725330516478417451

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1Aggregate_AnalysisFeatures00001
2Aggregate_Molecular_Subtype_Clusters00010
3CopyNumber_Clustering_CNMF00010
4CopyNumber_Clustering_CNMF_thresholded00010
5CopyNumber_Gistic200010
6CopyNumber_Gistic2_Postprocess_Focal00010
7Correlate_Clinical_vs_CopyNumber_Arm00010
8Correlate_Clinical_vs_CopyNumber_Focal00010
9Correlate_Clinical_vs_Methylation10000
10Correlate_Clinical_vs_miR01000
11Correlate_Clinical_vs_Molecular_Subtypes00010
12Correlate_Clinical_vs_mRNA00010
13Correlate_Clinical_vs_Mutation10000
14Correlate_CopyNumber_vs_miR00010
15Correlate_CopyNumber_vs_mRNA00010
16Correlate_Methylation_vs_mRNA10000
17Correlate_molecularSubtype_vs_CopyNumber_Arm00010
18Correlate_molecularSubtype_vs_CopyNumber_Focal00010
19Methylation_Clustering_CNMF10000
20Methylation_Preprocess10000
21miR_FindDirectTargets00010
22miR_Mature_Clustering_CNMF00010
23miR_Mature_Clustering_Consensus_Plus00010
24miR_Mature_Preprocess00010
25mRNA_lincRNA_Clustering_Consensus_Plus00010
26mRNA_lincRNA_CNMF00010
27mRNA_Preprocess00010
28mRNA_protein_coding_Clustering_CNMF00010
29mRNA_protein_coding_Clustering_Consensus_Plus00010
30Mutation_APOBEC01000
31Mutation_CoOccurrence10000
32Mutation_Signature01000
33Pathway_GSEA_mRNA00010
34Aggregate_AnalysisFeatures00001
35Aggregate_Molecular_Subtype_Clusters00010
36CopyNumber_Clustering_CNMF00010
37CopyNumber_Clustering_CNMF_thresholded00010
38CopyNumber_Gistic200010
39CopyNumber_Gistic2_Postprocess_Focal00010
40Correlate_Clinical_vs_CopyNumber_Arm00010
41Correlate_Clinical_vs_CopyNumber_Focal00010
42Correlate_Clinical_vs_Methylation10000
43Correlate_Clinical_vs_miR01000
44Correlate_Clinical_vs_Molecular_Subtypes00010
45Correlate_Clinical_vs_mRNA00010
46Correlate_Clinical_vs_Mutation10000
47Correlate_CopyNumber_vs_miR00010
48Correlate_CopyNumber_vs_mRNA00010
49Correlate_Methylation_vs_mRNA10000
50Correlate_molecularSubtype_vs_CopyNumber_Arm00010
51Correlate_molecularSubtype_vs_CopyNumber_Focal00010
52Methylation_Clustering_CNMF10000
53Methylation_Preprocess10000
54miR_FindDirectTargets00010
55miR_Mature_Clustering_CNMF00010
56miR_Mature_Clustering_Consensus_Plus00010
57miR_Mature_Preprocess00010
58mRNA_lincRNA_Clustering_Consensus_Plus00010
59mRNA_lincRNA_CNMF00010
60mRNA_Preprocess00010
61mRNA_protein_coding_Clustering_CNMF00010
62mRNA_protein_coding_Clustering_Consensus_Plus00010
63Mutation_APOBEC01000
64Mutation_CoOccurrence10000
65Mutation_Signature01000
66Pathway_GSEA_mRNA00001
67Aggregate_AnalysisFeatures01000
68Aggregate_Molecular_Subtype_Clusters10000
69CopyNumber_Clustering_CNMF10000
70CopyNumber_Clustering_CNMF_thresholded10000
71CopyNumber_Gistic200001
72CopyNumber_Gistic2_Postprocess_Focal10000
73Correlate_Clinical_vs_CopyNumber_Arm10000
74Correlate_Clinical_vs_CopyNumber_Focal10000
75Correlate_Clinical_vs_Methylation10000
76Correlate_Clinical_vs_miR10000
77Correlate_Clinical_vs_Molecular_Subtypes10000
78Correlate_Clinical_vs_mRNA10000
79Correlate_Clinical_vs_Mutation10000
80Correlate_CopyNumber_vs_miR10000
81Correlate_CopyNumber_vs_mRNA10000
82Correlate_Methylation_vs_mRNA10000
83Correlate_molecularSubtype_vs_CopyNumber_Arm10000
84Correlate_molecularSubtype_vs_CopyNumber_Focal10000
85Methylation_Clustering_CNMF10000
86Methylation_Preprocess10000
87miR_FindDirectTargets10000
88miR_Mature_Clustering_CNMF10000
89miR_Mature_Clustering_Consensus_Plus10000
90miR_Mature_Preprocess00010
91mRNA_lincRNA_Clustering_Consensus_Plus00001
92mRNA_lincRNA_CNMF00001
93mRNA_Preprocess00010
94mRNA_protein_coding_Clustering_CNMF00001
95mRNA_protein_coding_Clustering_Consensus_Plus00001
96Mutation_APOBEC01000
97Mutation_CoOccurrence10000
98Mutation_Signature01000
99Pathway_GSEA_mRNA10000
100Aggregate_AnalysisFeatures01000
101Aggregate_Molecular_Subtype_Clusters00010
102CopyNumber_Clustering_CNMF10000
103CopyNumber_Clustering_CNMF_thresholded10000
104CopyNumber_Gistic200001
105CopyNumber_Gistic2_Postprocess_Focal10000
106Correlate_Clinical_vs_CopyNumber_Arm10000
107Correlate_Clinical_vs_CopyNumber_Focal10000
108Correlate_Clinical_vs_Methylation10000
109Correlate_Clinical_vs_miR01000
110Correlate_Clinical_vs_Molecular_Subtypes00010
111Correlate_Clinical_vs_mRNA00010
112Correlate_Clinical_vs_Mutation10000
113Correlate_CopyNumber_vs_miR10000
114Correlate_CopyNumber_vs_mRNA10000
115Correlate_Methylation_vs_mRNA10000
116Correlate_molecularSubtype_vs_CopyNumber_Arm10000
117Correlate_molecularSubtype_vs_CopyNumber_Focal10000
118Methylation_Clustering_CNMF10000
119Methylation_Preprocess10000
120miR_FindDirectTargets00010
121miR_Mature_Clustering_CNMF00010
122miR_Mature_Clustering_Consensus_Plus00010
123miR_Mature_Preprocess00010
124mRNA_lincRNA_Clustering_Consensus_Plus00010
125mRNA_lincRNA_CNMF00010
126mRNA_Preprocess00010
127mRNA_protein_coding_Clustering_CNMF00010
128mRNA_protein_coding_Clustering_Consensus_Plus00010
129Mutation_APOBEC10000
130Mutation_CoOccurrence10000
131Mutation_Signature10000
132Pathway_GSEA_mRNA00010
133Aggregate_AnalysisFeatures01000
134Aggregate_Molecular_Subtype_Clusters10000
135CopyNumber_Clustering_CNMF10000
136CopyNumber_Clustering_CNMF_thresholded10000
137CopyNumber_Gistic200001
138CopyNumber_Gistic2_Postprocess_Focal10000
139Correlate_Clinical_vs_CopyNumber_Arm10000
140Correlate_Clinical_vs_CopyNumber_Focal10000
141Correlate_Clinical_vs_Methylation10000
142Correlate_Clinical_vs_miR10000
143Correlate_Clinical_vs_Molecular_Subtypes10000
144Correlate_Clinical_vs_mRNA10000
145Correlate_Clinical_vs_Mutation10000
146Correlate_CopyNumber_vs_miR10000
147Correlate_CopyNumber_vs_mRNA10000
148Correlate_Methylation_vs_mRNA10000
149Correlate_molecularSubtype_vs_CopyNumber_Arm10000
150Correlate_molecularSubtype_vs_CopyNumber_Focal10000
151Methylation_Clustering_CNMF10000
152Methylation_Preprocess10000
153miR_FindDirectTargets10000
154miR_Mature_Clustering_CNMF10000
155miR_Mature_Clustering_Consensus_Plus10000
156miR_Mature_Preprocess10000
157mRNA_lincRNA_Clustering_Consensus_Plus10000
158mRNA_lincRNA_CNMF10000
159mRNA_Preprocess10000
160mRNA_protein_coding_Clustering_CNMF10000
161mRNA_protein_coding_Clustering_Consensus_Plus10000
162Mutation_APOBEC10000
163Mutation_CoOccurrence10000
164Mutation_Signature10000
165Pathway_GSEA_mRNA10000
166Aggregate_AnalysisFeatures01000
167Aggregate_Molecular_Subtype_Clusters10000
168CopyNumber_Clustering_CNMF10000
169CopyNumber_Clustering_CNMF_thresholded10000
170CopyNumber_Gistic201000
171CopyNumber_Gistic2_Postprocess_Focal10000
172Correlate_Clinical_vs_CopyNumber_Arm10000
173Correlate_Clinical_vs_CopyNumber_Focal10000
174Correlate_Clinical_vs_Methylation10000
175Correlate_Clinical_vs_miR10000
176Correlate_Clinical_vs_Molecular_Subtypes10000
177Correlate_Clinical_vs_mRNA10000
178Correlate_Clinical_vs_Mutation10000
179Correlate_CopyNumber_vs_miR10000
180Correlate_CopyNumber_vs_mRNA10000
181Correlate_Methylation_vs_mRNA10000
182Correlate_molecularSubtype_vs_CopyNumber_Arm10000
183Correlate_molecularSubtype_vs_CopyNumber_Focal10000
184Methylation_Clustering_CNMF10000
185Methylation_Preprocess10000
186miR_FindDirectTargets10000
187miR_Mature_Clustering_CNMF10000
188miR_Mature_Clustering_Consensus_Plus10000
189miR_Mature_Preprocess01000
190mRNA_lincRNA_Clustering_Consensus_Plus10000
191mRNA_lincRNA_CNMF10000
192mRNA_Preprocess01000
193mRNA_protein_coding_Clustering_CNMF10000
194mRNA_protein_coding_Clustering_Consensus_Plus10000
195Mutation_APOBEC01000
196Mutation_CoOccurrence10000
197Mutation_Signature01000
198Pathway_GSEA_mRNA10000
199Aggregate_AnalysisFeatures01000
200Aggregate_Gene_Status10000
201Aggregate_Molecular_Subtype_Clusters01000
202Append_CustomClinical01000
203CoMut2.010000
204CoMut2CV10000
205CoMutCV10000
206CopyNumber_Clustering_CNMF10000
207CopyNumber_Clustering_CNMF_thresholded10000
208CopyNumber_Gistic201000
209CopyNumber_Gistic2_Postprocess_Focal10000
210CopyNumberLowPass_Gistic210000
211Correlate_Clinical_vs_CopyNumber_Arm10000
212Correlate_Clinical_vs_CopyNumber_Focal10000
213Correlate_Clinical_vs_Methylation10000
214Correlate_Clinical_vs_miR10000
215Correlate_Clinical_vs_miRseq10000
216Correlate_Clinical_vs_Molecular_Subtypes10000
217Correlate_Clinical_vs_mRNA10000
218Correlate_Clinical_vs_mRNAseq10000
219Correlate_Clinical_vs_Mutation10000
220Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
221Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
222Correlate_Clinical_vs_MutationRate10000
223Correlate_Clinical_vs_RPPA10000
224Correlate_CopyNumber_vs_miR10000
225Correlate_CopyNumber_vs_mRNA10000
226Correlate_CopyNumber_vs_mRNAseq10000
227Correlate_Methylation_vs_mRNA01000
228Correlate_molecularSubtype_vs_CopyNumber_Arm10000
229Correlate_molecularSubtype_vs_CopyNumber_Focal10000
230Correlate_molecularSubtype_vs_Mutation10000
231Correlate_mRNAseq_vs_Mutation_APOBEC10000
232GenerateStickFigures2.010000
233GenerateStickFigures2CV10000
234GenerateStickFiguresCV10000
235iClusterPlus10000
236LegoPlotter2.010000
237LegoPlotter2CV10000
238LegoPlotterCV10000
239Methylation_Clustering_CNMF01000
240miR_Clustering_CNMF10000
241miR_Clustering_Consensus_Plus10000
242miR_FindDirectTargets10000
243miRseq_Clustering_CNMF01000
244miRseq_Clustering_Consensus_Plus01000
245miRseq_FindDirectTargets01000
246miRseq_Mature_Clustering_CNMF01000
247miRseq_Mature_Clustering_Consensus_Plus01000
248mRNA_Clustering_CNMF01000
249mRNA_Clustering_Consensus_Plus01000
250mRNAseq_Clustering_CNMF01000
251mRNAseq_Clustering_Consensus_Plus00010
252Mutation_APOBEC10000
253Mutation_Assessor10000
254Mutation_CHASM10000
255Mutation_CoOccurrence10000
256Mutation_CoOccurrence_Custom10000
257MutSigNozzleReport2.010000
258MutSigNozzleReport2CV10000
259MutSigNozzleReportCV10000
260MutSigPreprocess2.010000
261MutSigRun2.010000
262MutSigRun2CV10000
263MutSigRunCV10000
264Paradigm_mRNA10000
265Paradigm_mRNA_And_CopyNumber10000
266Paradigm_Prepare_mRNA10000
267Paradigm_Prepare_mRNA_And_Copy_Number10000
268Paradigm_Prepare_RNASeq10000
269Paradigm_Prepare_RNASeq_And_Copy_Number10000
270ParadigmPreprocess_mRNA01000
271Paradigm_Preprocess_mRNA10000
272Paradigm_Preprocess_mRNA_And_Copy_Number10000
273ParadigmPreprocess_RNASeq01000
274Paradigm_Preprocess_RNASeq10000
275Paradigm_Preprocess_RNASeq_And_Copy_Number10000
276Paradigm_Report_Preprocess_mRNA10000
277Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
278Paradigm_Report_Preprocess_RNASeq10000
279Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
280Paradigm_RNASeq10000
281Paradigm_RNASeq_And_Copy_Number10000
282Pathway_FindEnrichedGenes10000
283Pathway_GSEA_mRNAseq10000
284Pathway_Hotnet10000
285Pathway_Overlaps_MSigDB_MutSig2CV10000
286Pathway_Paradigm_mRNA10000
287Pathway_Paradigm_mRNA_And_Copy_Number10000
288Pathway_Paradigm_RNASeq10000
289Pathway_Paradigm_RNASeq_And_Copy_Number10000
290ProcessCoverageForMutSig2.010000
291RPPA_Clustering_CNMF01000
292RPPA_Clustering_Consensus_Plus01000
293TP-Aggregate_AnalysisFeatures01000
294TP-Aggregate_Gene_Status10000
295TP-Aggregate_Molecular_Subtype_Clusters01000
296TP-Append_CustomClinical01000
297TP-CoMut2.010000
298TP-CoMut2CV10000
299TP-CoMutCV10000
300TP-CopyNumber_Clustering_CNMF10000
301TP-CopyNumber_Clustering_CNMF_thresholded10000
302TP-CopyNumber_Gistic201000
303TP-CopyNumber_Gistic2_Postprocess_Focal10000
304TP-CopyNumberLowPass_Gistic210000
305TP-Correlate_Clinical_vs_CopyNumber_Arm10000
306TP-Correlate_Clinical_vs_CopyNumber_Focal10000
307TP-Correlate_Clinical_vs_Methylation10000
308TP-Correlate_Clinical_vs_miR10000
309TP-Correlate_Clinical_vs_miRseq10000
310TP-Correlate_Clinical_vs_Molecular_Subtypes10000
311TP-Correlate_Clinical_vs_mRNA10000
312TP-Correlate_Clinical_vs_mRNAseq10000
313TP-Correlate_Clinical_vs_Mutation10000
314TP-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
315TP-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
316TP-Correlate_Clinical_vs_MutationRate10000
317TP-Correlate_Clinical_vs_RPPA10000
318TP-Correlate_CopyNumber_vs_miR10000
319TP-Correlate_CopyNumber_vs_mRNA10000
320TP-Correlate_CopyNumber_vs_mRNAseq10000
321TP-Correlate_Methylation_vs_mRNA01000
322TP-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
323TP-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
324TP-Correlate_molecularSubtype_vs_Mutation10000
325TP-Correlate_mRNAseq_vs_Mutation_APOBEC10000
326TP-GenerateStickFigures2.010000
327TP-GenerateStickFigures2CV10000
328TP-GenerateStickFiguresCV10000
329TP-iClusterPlus10000
330TP-LegoPlotter2.010000
331TP-LegoPlotter2CV10000
332TP-LegoPlotterCV10000
333TP-Methylation_Clustering_CNMF01000
334TP-miR_Clustering_CNMF10000
335TP-miR_Clustering_Consensus_Plus10000
336TP-miR_FindDirectTargets10000
337TP-miRseq_Clustering_CNMF01000
338TP-miRseq_Clustering_Consensus_Plus01000
339TP-miRseq_FindDirectTargets01000
340TP-miRseq_Mature_Clustering_CNMF01000
341TP-miRseq_Mature_Clustering_Consensus_Plus01000
342TP-mRNA_Clustering_CNMF01000
343TP-mRNA_Clustering_Consensus_Plus01000
344TP-mRNAseq_Clustering_CNMF01000
345TP-mRNAseq_Clustering_Consensus_Plus00010
346TP-Mutation_APOBEC10000
347TP-Mutation_Assessor10000
348TP-Mutation_CHASM10000
349TP-Mutation_CoOccurrence10000
350TP-Mutation_CoOccurrence_Custom10000
351TP-MutSigNozzleReport2.010000
352TP-MutSigNozzleReport2CV10000
353TP-MutSigNozzleReportCV10000
354TP-MutSigPreprocess2.001000
355TP-MutSigRun2.010000
356TP-MutSigRun2CV01000
357TP-MutSigRunCV01000
358TP-Paradigm_mRNA10000
359TP-Paradigm_mRNA_And_CopyNumber10000
360TP-Paradigm_Prepare_mRNA10000
361TP-Paradigm_Prepare_mRNA_And_Copy_Number10000
362TP-Paradigm_Prepare_RNASeq10000
363TP-Paradigm_Prepare_RNASeq_And_Copy_Number10000
364TP-ParadigmPreprocess_mRNA01000
365TP-Paradigm_Preprocess_mRNA10000
366TP-Paradigm_Preprocess_mRNA_And_Copy_Number10000
367TP-ParadigmPreprocess_RNASeq01000
368TP-Paradigm_Preprocess_RNASeq10000
369TP-Paradigm_Preprocess_RNASeq_And_Copy_Number10000
370TP-Paradigm_Report_Preprocess_mRNA10000
371TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
372TP-Paradigm_Report_Preprocess_RNASeq10000
373TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
374TP-Paradigm_RNASeq10000
375TP-Paradigm_RNASeq_And_Copy_Number10000
376TP-Pathway_FindEnrichedGenes10000
377TP-Pathway_GSEA_mRNAseq10000
378TP-Pathway_Hotnet10000
379TP-Pathway_Overlaps_MSigDB_MutSig2CV10000
380TP-Pathway_Paradigm_mRNA10000
381TP-Pathway_Paradigm_mRNA_And_Copy_Number10000
382TP-Pathway_Paradigm_RNASeq10000
383TP-Pathway_Paradigm_RNASeq_And_Copy_Number10000
384TP-ProcessCoverageForMutSig2.010000
385TP-RPPA_Clustering_CNMF01000
386TP-RPPA_Clustering_Consensus_Plus01000
387TAP-Aggregate_AnalysisFeatures01000
388TAP-Aggregate_Gene_Status10000
389TAP-Aggregate_Molecular_Subtype_Clusters10000
390TAP-Append_CustomClinical10000
391TAP-CoMut2.010000
392TAP-CoMut2CV10000
393TAP-CoMutCV10000
394TAP-CopyNumber_Clustering_CNMF10000
395TAP-CopyNumber_Clustering_CNMF_thresholded10000
396TAP-CopyNumber_Gistic201000
397TAP-CopyNumber_Gistic2_Postprocess_Focal10000
398TAP-CopyNumberLowPass_Gistic210000
399TAP-Correlate_Clinical_vs_CopyNumber_Arm10000
400TAP-Correlate_Clinical_vs_CopyNumber_Focal10000
401TAP-Correlate_Clinical_vs_Methylation10000
402TAP-Correlate_Clinical_vs_miR10000
403TAP-Correlate_Clinical_vs_miRseq10000
404TAP-Correlate_Clinical_vs_Molecular_Subtypes10000
405TAP-Correlate_Clinical_vs_mRNA10000
406TAP-Correlate_Clinical_vs_mRNAseq10000
407TAP-Correlate_Clinical_vs_Mutation10000
408TAP-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
409TAP-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
410TAP-Correlate_Clinical_vs_MutationRate10000
411TAP-Correlate_Clinical_vs_RPPA10000
412TAP-Correlate_CopyNumber_vs_miR10000
413TAP-Correlate_CopyNumber_vs_mRNA10000
414TAP-Correlate_CopyNumber_vs_mRNAseq10000
415TAP-Correlate_Methylation_vs_mRNA10000
416TAP-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
417TAP-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
418TAP-Correlate_molecularSubtype_vs_Mutation10000
419TAP-Correlate_mRNAseq_vs_Mutation_APOBEC10000
420TAP-GenerateStickFigures2.010000
421TAP-GenerateStickFigures2CV10000
422TAP-GenerateStickFiguresCV10000
423TAP-iClusterPlus10000
424TAP-LegoPlotter2.010000
425TAP-LegoPlotter2CV10000
426TAP-LegoPlotterCV10000
427TAP-Methylation_Clustering_CNMF01000
428TAP-miR_Clustering_CNMF10000
429TAP-miR_Clustering_Consensus_Plus10000
430TAP-miR_FindDirectTargets10000
431TAP-miRseq_Clustering_CNMF10000
432TAP-miRseq_Clustering_Consensus_Plus10000
433TAP-miRseq_FindDirectTargets10000
434TAP-miRseq_Mature_Clustering_CNMF10000
435TAP-miRseq_Mature_Clustering_Consensus_Plus10000
436TAP-mRNA_Clustering_CNMF10000
437TAP-mRNA_Clustering_Consensus_Plus10000
438TAP-mRNAseq_Clustering_CNMF10000
439TAP-mRNAseq_Clustering_Consensus_Plus10000
440TAP-Mutation_APOBEC10000
441TAP-Mutation_Assessor10000
442TAP-Mutation_CHASM10000
443TAP-Mutation_CoOccurrence10000
444TAP-Mutation_CoOccurrence_Custom10000
445TAP-MutSigNozzleReport2.010000
446TAP-MutSigNozzleReport2CV10000
447TAP-MutSigNozzleReportCV10000
448TAP-MutSigPreprocess2.010000
449TAP-MutSigRun2.010000
450TAP-MutSigRun2CV10000
451TAP-MutSigRunCV10000
452TAP-Paradigm_mRNA10000
453TAP-Paradigm_mRNA_And_CopyNumber10000
454TAP-Paradigm_Prepare_mRNA10000
455TAP-Paradigm_Prepare_mRNA_And_Copy_Number10000
456TAP-Paradigm_Prepare_RNASeq10000
457TAP-Paradigm_Prepare_RNASeq_And_Copy_Number10000
458TAP-Paradigm_Preprocess_mRNA10000
459TAP-ParadigmPreprocess_mRNA10000
460TAP-Paradigm_Preprocess_mRNA_And_Copy_Number10000
461TAP-ParadigmPreprocess_RNASeq01000
462TAP-Paradigm_Preprocess_RNASeq10000
463TAP-Paradigm_Preprocess_RNASeq_And_Copy_Number10000
464TAP-Paradigm_Report_Preprocess_mRNA10000
465TAP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
466TAP-Paradigm_Report_Preprocess_RNASeq10000
467TAP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
468TAP-Paradigm_RNASeq10000
469TAP-Paradigm_RNASeq_And_Copy_Number10000
470TAP-Pathway_FindEnrichedGenes10000
471TAP-Pathway_GSEA_mRNAseq10000
472TAP-Pathway_Hotnet10000
473TAP-Pathway_Overlaps_MSigDB_MutSig2CV10000
474TAP-Pathway_Paradigm_mRNA10000
475TAP-Pathway_Paradigm_mRNA_And_Copy_Number10000
476TAP-Pathway_Paradigm_RNASeq10000
477TAP-Pathway_Paradigm_RNASeq_And_Copy_Number10000
478TAP-ProcessCoverageForMutSig2.010000
479TAP-RPPA_Clustering_CNMF10000
480TAP-RPPA_Clustering_Consensus_Plus10000
481NT-Aggregate_AnalysisFeatures01000
482NT-Aggregate_Gene_Status10000
483NT-Aggregate_Molecular_Subtype_Clusters01000
484NT-Append_CustomClinical01000
485NT-CoMut2.010000
486NT-CoMut2CV10000
487NT-CoMutCV10000
488NT-CopyNumber_Clustering_CNMF10000
489NT-CopyNumber_Clustering_CNMF_thresholded10000
490NT-CopyNumber_Gistic201000
491NT-CopyNumber_Gistic2_Postprocess_Focal10000
492NT-CopyNumberLowPass_Gistic210000
493NT-Correlate_Clinical_vs_CopyNumber_Arm10000
494NT-Correlate_Clinical_vs_CopyNumber_Focal10000
495NT-Correlate_Clinical_vs_Methylation10000
496NT-Correlate_Clinical_vs_miR10000
497NT-Correlate_Clinical_vs_miRseq10000
498NT-Correlate_Clinical_vs_Molecular_Subtypes10000
499NT-Correlate_Clinical_vs_mRNA10000
500NT-Correlate_Clinical_vs_mRNAseq10000
501NT-Correlate_Clinical_vs_Mutation10000
502NT-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
503NT-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
504NT-Correlate_Clinical_vs_MutationRate10000
505NT-Correlate_Clinical_vs_RPPA10000
506NT-Correlate_CopyNumber_vs_miR10000
507NT-Correlate_CopyNumber_vs_mRNA10000
508NT-Correlate_CopyNumber_vs_mRNAseq10000
509NT-Correlate_Methylation_vs_mRNA10000
510NT-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
511NT-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
512NT-Correlate_molecularSubtype_vs_Mutation10000
513NT-Correlate_mRNAseq_vs_Mutation_APOBEC10000
514NT-GenerateStickFigures2.010000
515NT-GenerateStickFigures2CV10000
516NT-GenerateStickFiguresCV10000
517NT-iClusterPlus10000
518NT-LegoPlotter2.010000
519NT-LegoPlotter2CV10000
520NT-LegoPlotterCV10000
521NT-Methylation_Clustering_CNMF01000
522NT-miR_Clustering_CNMF10000
523NT-miR_Clustering_Consensus_Plus10000
524NT-miR_FindDirectTargets10000
525NT-miRseq_Clustering_CNMF01000
526NT-miRseq_Clustering_Consensus_Plus01000
527NT-miRseq_FindDirectTargets01000
528NT-miRseq_Mature_Clustering_CNMF01000
529NT-miRseq_Mature_Clustering_Consensus_Plus01000
530NT-mRNA_Clustering_CNMF10000
531NT-mRNA_Clustering_Consensus_Plus10000
532NT-mRNAseq_Clustering_CNMF01000
533NT-mRNAseq_Clustering_Consensus_Plus00010
534NT-Mutation_APOBEC10000
535NT-Mutation_Assessor10000
536NT-Mutation_CHASM10000
537NT-Mutation_CoOccurrence10000
538NT-Mutation_CoOccurrence_Custom10000
539NT-MutSigNozzleReport2.010000
540NT-MutSigNozzleReport2CV10000
541NT-MutSigNozzleReportCV10000
542NT-MutSigPreprocess2.010000
543NT-MutSigRun2.010000
544NT-MutSigRun2CV10000
545NT-MutSigRunCV10000
546NT-Paradigm_mRNA10000
547NT-Paradigm_mRNA_And_CopyNumber10000
548NT-Paradigm_Prepare_mRNA10000
549NT-Paradigm_Prepare_mRNA_And_Copy_Number10000
550NT-Paradigm_Prepare_RNASeq10000
551NT-Paradigm_Prepare_RNASeq_And_Copy_Number10000
552NT-Paradigm_Preprocess_mRNA10000
553NT-ParadigmPreprocess_mRNA10000
554NT-Paradigm_Preprocess_mRNA_And_Copy_Number10000
555NT-ParadigmPreprocess_RNASeq01000
556NT-Paradigm_Preprocess_RNASeq10000
557NT-Paradigm_Preprocess_RNASeq_And_Copy_Number10000
558NT-Paradigm_Report_Preprocess_mRNA10000
559NT-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
560NT-Paradigm_Report_Preprocess_RNASeq10000
561NT-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
562NT-Paradigm_RNASeq10000
563NT-Paradigm_RNASeq_And_Copy_Number10000
564NT-Pathway_FindEnrichedGenes10000
565NT-Pathway_GSEA_mRNAseq10000
566NT-Pathway_Hotnet10000
567NT-Pathway_Overlaps_MSigDB_MutSig2CV10000
568NT-Pathway_Paradigm_mRNA10000
569NT-Pathway_Paradigm_mRNA_And_Copy_Number10000
570NT-Pathway_Paradigm_RNASeq10000
571NT-Pathway_Paradigm_RNASeq_And_Copy_Number10000
572NT-ProcessCoverageForMutSig2.010000
573NT-RPPA_Clustering_CNMF10000
574NT-RPPA_Clustering_Consensus_Plus10000
575NB-Aggregate_AnalysisFeatures01000
576NB-Aggregate_Gene_Status10000
577NB-Aggregate_Molecular_Subtype_Clusters10000
578NB-Append_CustomClinical01000
579NB-CoMut2.010000
580NB-CoMut2CV10000
581NB-CoMutCV10000
582NB-CopyNumber_Clustering_CNMF10000
583NB-CopyNumber_Clustering_CNMF_thresholded10000
584NB-CopyNumber_Gistic201000
585NB-CopyNumber_Gistic2_Postprocess_Focal10000
586NB-CopyNumberLowPass_Gistic210000
587NB-Correlate_Clinical_vs_CopyNumber_Arm10000
588NB-Correlate_Clinical_vs_CopyNumber_Focal10000
589NB-Correlate_Clinical_vs_Methylation10000
590NB-Correlate_Clinical_vs_miR10000
591NB-Correlate_Clinical_vs_miRseq10000
592NB-Correlate_Clinical_vs_Molecular_Subtypes10000
593NB-Correlate_Clinical_vs_mRNA10000
594NB-Correlate_Clinical_vs_mRNAseq10000
595NB-Correlate_Clinical_vs_Mutation10000
596NB-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
597NB-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
598NB-Correlate_Clinical_vs_MutationRate10000
599NB-Correlate_Clinical_vs_RPPA10000
600NB-Correlate_CopyNumber_vs_miR10000
601NB-Correlate_CopyNumber_vs_mRNA10000
602NB-Correlate_CopyNumber_vs_mRNAseq10000
603NB-Correlate_Methylation_vs_mRNA10000
604NB-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
605NB-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
606NB-Correlate_molecularSubtype_vs_Mutation10000
607NB-Correlate_mRNAseq_vs_Mutation_APOBEC10000
608NB-GenerateStickFigures2.010000
609NB-GenerateStickFigures2CV10000
610NB-GenerateStickFiguresCV10000
611NB-iClusterPlus10000
612NB-LegoPlotter2.010000
613NB-LegoPlotter2CV10000
614NB-LegoPlotterCV10000
615NB-Methylation_Clustering_CNMF10000
616NB-miR_Clustering_CNMF10000
617NB-miR_Clustering_Consensus_Plus10000
618NB-miR_FindDirectTargets10000
619NB-miRseq_Clustering_CNMF10000
620NB-miRseq_Clustering_Consensus_Plus10000
621NB-miRseq_FindDirectTargets10000
622NB-miRseq_Mature_Clustering_CNMF10000
623NB-miRseq_Mature_Clustering_Consensus_Plus10000
624NB-mRNA_Clustering_CNMF10000
625NB-mRNA_Clustering_Consensus_Plus10000
626NB-mRNAseq_Clustering_CNMF10000
627NB-mRNAseq_Clustering_Consensus_Plus10000
628NB-Mutation_APOBEC10000
629NB-Mutation_Assessor10000
630NB-Mutation_CHASM10000
631NB-Mutation_CoOccurrence10000
632NB-Mutation_CoOccurrence_Custom10000
633NB-MutSigNozzleReport2.010000
634NB-MutSigNozzleReport2CV10000
635NB-MutSigNozzleReportCV10000
636NB-MutSigPreprocess2.010000
637NB-MutSigRun2.010000
638NB-MutSigRun2CV10000
639NB-MutSigRunCV10000
640NB-Paradigm_mRNA10000
641NB-Paradigm_mRNA_And_CopyNumber10000
642NB-Paradigm_Prepare_mRNA10000
643NB-Paradigm_Prepare_mRNA_And_Copy_Number10000
644NB-Paradigm_Prepare_RNASeq10000
645NB-Paradigm_Prepare_RNASeq_And_Copy_Number10000
646NB-Paradigm_Preprocess_mRNA10000
647NB-ParadigmPreprocess_mRNA10000
648NB-Paradigm_Preprocess_mRNA_And_Copy_Number10000
649NB-Paradigm_Preprocess_RNASeq10000
650NB-ParadigmPreprocess_RNASeq10000
651NB-Paradigm_Preprocess_RNASeq_And_Copy_Number10000
652NB-Paradigm_Report_Preprocess_mRNA10000
653NB-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
654NB-Paradigm_Report_Preprocess_RNASeq10000
655NB-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
656NB-Paradigm_RNASeq10000
657NB-Paradigm_RNASeq_And_Copy_Number10000
658NB-Pathway_FindEnrichedGenes10000
659NB-Pathway_GSEA_mRNAseq10000
660NB-Pathway_Hotnet10000
661NB-Pathway_Overlaps_MSigDB_MutSig2CV10000
662NB-Pathway_Paradigm_mRNA10000
663NB-Pathway_Paradigm_mRNA_And_Copy_Number10000
664NB-Pathway_Paradigm_RNASeq10000
665NB-Pathway_Paradigm_RNASeq_And_Copy_Number10000
666NB-ProcessCoverageForMutSig2.010000
667NB-RPPA_Clustering_CNMF10000
668NB-RPPA_Clustering_Consensus_Plus10000
669FFPE-Aggregate_AnalysisFeatures01000
670FFPE-Aggregate_Gene_Status10000
671FFPE-Aggregate_Molecular_Subtype_Clusters10000
672FFPE-Append_CustomClinical10000
673FFPE-CoMut2.010000
674FFPE-CoMut2CV10000
675FFPE-CoMutCV10000
676FFPE-CopyNumber_Clustering_CNMF10000
677FFPE-CopyNumber_Clustering_CNMF_thresholded10000
678FFPE-CopyNumber_Gistic201000
679FFPE-CopyNumber_Gistic2_Postprocess_Focal10000
680FFPE-CopyNumberLowPass_Gistic210000
681FFPE-Correlate_Clinical_vs_CopyNumber_Arm10000
682FFPE-Correlate_Clinical_vs_CopyNumber_Focal10000
683FFPE-Correlate_Clinical_vs_Methylation10000
684FFPE-Correlate_Clinical_vs_miR10000
685FFPE-Correlate_Clinical_vs_miRseq10000
686FFPE-Correlate_Clinical_vs_Molecular_Subtypes10000
687FFPE-Correlate_Clinical_vs_mRNA10000
688FFPE-Correlate_Clinical_vs_mRNAseq10000
689FFPE-Correlate_Clinical_vs_Mutation10000
690FFPE-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
691FFPE-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
692FFPE-Correlate_Clinical_vs_MutationRate10000
693FFPE-Correlate_Clinical_vs_RPPA10000
694FFPE-Correlate_CopyNumber_vs_miR10000
695FFPE-Correlate_CopyNumber_vs_mRNA10000
696FFPE-Correlate_CopyNumber_vs_mRNAseq10000
697FFPE-Correlate_Methylation_vs_mRNA10000
698FFPE-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
699FFPE-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
700FFPE-Correlate_molecularSubtype_vs_Mutation10000
701FFPE-Correlate_mRNAseq_vs_Mutation_APOBEC10000
702FFPE-GenerateStickFigures2.010000
703FFPE-GenerateStickFigures2CV10000
704FFPE-GenerateStickFiguresCV10000
705FFPE-iClusterPlus10000
706FFPE-LegoPlotter2.010000
707FFPE-LegoPlotter2CV10000
708FFPE-LegoPlotterCV10000
709FFPE-Methylation_Clustering_CNMF01000
710FFPE-miR_Clustering_CNMF10000
711FFPE-miR_Clustering_Consensus_Plus10000
712FFPE-miR_FindDirectTargets10000
713FFPE-miRseq_Clustering_CNMF10000
714FFPE-miRseq_Clustering_Consensus_Plus10000
715FFPE-miRseq_FindDirectTargets10000
716FFPE-miRseq_Mature_Clustering_CNMF10000
717FFPE-miRseq_Mature_Clustering_Consensus_Plus10000
718FFPE-mRNA_Clustering_CNMF10000
719FFPE-mRNA_Clustering_Consensus_Plus10000
720FFPE-mRNAseq_Clustering_CNMF10000
721FFPE-mRNAseq_Clustering_Consensus_Plus10000
722FFPE-Mutation_APOBEC10000
723FFPE-Mutation_Assessor10000
724FFPE-Mutation_CHASM10000
725FFPE-Mutation_CoOccurrence10000
726FFPE-Mutation_CoOccurrence_Custom10000
727FFPE-MutSigNozzleReport2.010000
728FFPE-MutSigNozzleReport2CV10000
729FFPE-MutSigNozzleReportCV10000
730FFPE-MutSigPreprocess2.010000
731FFPE-MutSigRun2.010000
732FFPE-MutSigRun2CV10000
733FFPE-MutSigRunCV10000
734FFPE-Paradigm_mRNA10000
735FFPE-Paradigm_mRNA_And_CopyNumber10000
736FFPE-Paradigm_Prepare_mRNA10000
737FFPE-Paradigm_Prepare_mRNA_And_Copy_Number10000
738FFPE-Paradigm_Prepare_RNASeq10000
739FFPE-Paradigm_Prepare_RNASeq_And_Copy_Number10000
740FFPE-Paradigm_Preprocess_mRNA10000
741FFPE-ParadigmPreprocess_mRNA10000
742FFPE-Paradigm_Preprocess_mRNA_And_Copy_Number10000
743FFPE-Paradigm_Preprocess_RNASeq10000
744FFPE-ParadigmPreprocess_RNASeq10000
745FFPE-Paradigm_Preprocess_RNASeq_And_Copy_Number10000
746FFPE-Paradigm_Report_Preprocess_mRNA10000
747FFPE-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
748FFPE-Paradigm_Report_Preprocess_RNASeq10000
749FFPE-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
750FFPE-Paradigm_RNASeq10000
751FFPE-Paradigm_RNASeq_And_Copy_Number10000
752FFPE-Pathway_FindEnrichedGenes10000
753FFPE-Pathway_GSEA_mRNAseq10000
754FFPE-Pathway_Hotnet10000
755FFPE-Pathway_Overlaps_MSigDB_MutSig2CV10000
756FFPE-Pathway_Paradigm_mRNA10000
757FFPE-Pathway_Paradigm_mRNA_And_Copy_Number10000
758FFPE-Pathway_Paradigm_RNASeq10000
759FFPE-Pathway_Paradigm_RNASeq_And_Copy_Number10000
760FFPE-ProcessCoverageForMutSig2.010000
761FFPE-RPPA_Clustering_CNMF10000
762FFPE-RPPA_Clustering_Consensus_Plus10000
Total6107906310

This table generated on Thu Jan 26 11:03:55 2017