Broad GDAC Analyses Status
dev Run for Tumor Type: STES

CohortBCRClinicalCNLowPMethylationmRNAmRNASeqmiRmiRSeqRPPAMAFrawMAF
STES62862862615862805990620483474395

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1Aggregate_AnalysisFeatures00001
2Aggregate_Molecular_Subtype_Clusters00010
3CopyNumber_Clustering_CNMF00010
4CopyNumber_Clustering_CNMF_thresholded00010
5CopyNumber_Gistic200010
6CopyNumber_Gistic2_Postprocess_Focal00010
7Correlate_Clinical_vs_CopyNumber_Arm00010
8Correlate_Clinical_vs_CopyNumber_Focal00010
9Correlate_Clinical_vs_Methylation10000
10Correlate_Clinical_vs_miR01000
11Correlate_Clinical_vs_Molecular_Subtypes00010
12Correlate_Clinical_vs_mRNA00010
13Correlate_Clinical_vs_Mutation10000
14Correlate_CopyNumber_vs_miR00010
15Correlate_CopyNumber_vs_mRNA00010
16Correlate_Methylation_vs_mRNA10000
17Correlate_molecularSubtype_vs_CopyNumber_Arm00010
18Correlate_molecularSubtype_vs_CopyNumber_Focal00010
19Methylation_Clustering_CNMF10000
20Methylation_Preprocess10000
21miR_FindDirectTargets00010
22miR_Mature_Clustering_CNMF00010
23miR_Mature_Clustering_Consensus_Plus00010
24miR_Mature_Preprocess00010
25mRNA_lincRNA_Clustering_Consensus_Plus00010
26mRNA_lincRNA_CNMF00010
27mRNA_Preprocess00010
28mRNA_protein_coding_Clustering_CNMF00010
29mRNA_protein_coding_Clustering_Consensus_Plus00010
30Mutation_APOBEC01000
31Mutation_CoOccurrence10000
32Mutation_Signature01000
33Pathway_GSEA_mRNA00010
34Aggregate_AnalysisFeatures00010
35Aggregate_Molecular_Subtype_Clusters00010
36CopyNumber_Clustering_CNMF00010
37CopyNumber_Clustering_CNMF_thresholded00010
38CopyNumber_Gistic200010
39CopyNumber_Gistic2_Postprocess_Focal00010
40Correlate_Clinical_vs_CopyNumber_Arm00010
41Correlate_Clinical_vs_CopyNumber_Focal00010
42Correlate_Clinical_vs_Methylation10000
43Correlate_Clinical_vs_miR01000
44Correlate_Clinical_vs_Molecular_Subtypes00010
45Correlate_Clinical_vs_mRNA00010
46Correlate_Clinical_vs_Mutation10000
47Correlate_CopyNumber_vs_miR00010
48Correlate_CopyNumber_vs_mRNA00010
49Correlate_Methylation_vs_mRNA10000
50Correlate_molecularSubtype_vs_CopyNumber_Arm00010
51Correlate_molecularSubtype_vs_CopyNumber_Focal00010
52Methylation_Clustering_CNMF10000
53Methylation_Preprocess10000
54miR_FindDirectTargets00010
55miR_Mature_Clustering_CNMF00010
56miR_Mature_Clustering_Consensus_Plus00010
57miR_Mature_Preprocess00010
58mRNA_lincRNA_Clustering_Consensus_Plus00010
59mRNA_lincRNA_CNMF00010
60mRNA_Preprocess00010
61mRNA_protein_coding_Clustering_CNMF00010
62mRNA_protein_coding_Clustering_Consensus_Plus00010
63Mutation_APOBEC01000
64Mutation_CoOccurrence00010
65Mutation_Signature01000
66Pathway_GSEA_mRNA00010
67Aggregate_AnalysisFeatures01000
68Aggregate_Molecular_Subtype_Clusters10000
69CopyNumber_Clustering_CNMF10000
70CopyNumber_Clustering_CNMF_thresholded10000
71CopyNumber_Gistic200001
72CopyNumber_Gistic2_Postprocess_Focal10000
73Correlate_Clinical_vs_CopyNumber_Arm10000
74Correlate_Clinical_vs_CopyNumber_Focal10000
75Correlate_Clinical_vs_Methylation10000
76Correlate_Clinical_vs_miR10000
77Correlate_Clinical_vs_Molecular_Subtypes10000
78Correlate_Clinical_vs_mRNA10000
79Correlate_Clinical_vs_Mutation10000
80Correlate_CopyNumber_vs_miR10000
81Correlate_CopyNumber_vs_mRNA10000
82Correlate_Methylation_vs_mRNA10000
83Correlate_molecularSubtype_vs_CopyNumber_Arm10000
84Correlate_molecularSubtype_vs_CopyNumber_Focal10000
85Methylation_Clustering_CNMF10000
86Methylation_Preprocess10000
87miR_FindDirectTargets10000
88miR_Mature_Clustering_CNMF10000
89miR_Mature_Clustering_Consensus_Plus10000
90miR_Mature_Preprocess00010
91mRNA_lincRNA_Clustering_Consensus_Plus00001
92mRNA_lincRNA_CNMF00001
93mRNA_Preprocess00010
94mRNA_protein_coding_Clustering_CNMF00001
95mRNA_protein_coding_Clustering_Consensus_Plus00001
96Mutation_APOBEC01000
97Mutation_CoOccurrence10000
98Mutation_Signature01000
99Pathway_GSEA_mRNA10000
100Aggregate_AnalysisFeatures01000
101Aggregate_Molecular_Subtype_Clusters00010
102CopyNumber_Clustering_CNMF10000
103CopyNumber_Clustering_CNMF_thresholded10000
104CopyNumber_Gistic200001
105CopyNumber_Gistic2_Postprocess_Focal10000
106Correlate_Clinical_vs_CopyNumber_Arm10000
107Correlate_Clinical_vs_CopyNumber_Focal10000
108Correlate_Clinical_vs_Methylation10000
109Correlate_Clinical_vs_miR01000
110Correlate_Clinical_vs_Molecular_Subtypes00010
111Correlate_Clinical_vs_mRNA00010
112Correlate_Clinical_vs_Mutation10000
113Correlate_CopyNumber_vs_miR10000
114Correlate_CopyNumber_vs_mRNA10000
115Correlate_Methylation_vs_mRNA10000
116Correlate_molecularSubtype_vs_CopyNumber_Arm10000
117Correlate_molecularSubtype_vs_CopyNumber_Focal10000
118Methylation_Clustering_CNMF10000
119Methylation_Preprocess10000
120miR_FindDirectTargets00010
121miR_Mature_Clustering_CNMF00010
122miR_Mature_Clustering_Consensus_Plus00010
123miR_Mature_Preprocess00010
124mRNA_lincRNA_Clustering_Consensus_Plus00001
125mRNA_lincRNA_CNMF00001
126mRNA_Preprocess00010
127mRNA_protein_coding_Clustering_CNMF00010
128mRNA_protein_coding_Clustering_Consensus_Plus00010
129Mutation_APOBEC10000
130Mutation_CoOccurrence10000
131Mutation_Signature10000
132Pathway_GSEA_mRNA00010
133Aggregate_AnalysisFeatures01000
134Aggregate_Molecular_Subtype_Clusters10000
135CopyNumber_Clustering_CNMF10000
136CopyNumber_Clustering_CNMF_thresholded10000
137CopyNumber_Gistic200001
138CopyNumber_Gistic2_Postprocess_Focal10000
139Correlate_Clinical_vs_CopyNumber_Arm10000
140Correlate_Clinical_vs_CopyNumber_Focal10000
141Correlate_Clinical_vs_Methylation10000
142Correlate_Clinical_vs_miR10000
143Correlate_Clinical_vs_Molecular_Subtypes10000
144Correlate_Clinical_vs_mRNA10000
145Correlate_Clinical_vs_Mutation10000
146Correlate_CopyNumber_vs_miR10000
147Correlate_CopyNumber_vs_mRNA10000
148Correlate_Methylation_vs_mRNA10000
149Correlate_molecularSubtype_vs_CopyNumber_Arm10000
150Correlate_molecularSubtype_vs_CopyNumber_Focal10000
151Methylation_Clustering_CNMF10000
152Methylation_Preprocess10000
153miR_FindDirectTargets10000
154miR_Mature_Clustering_CNMF10000
155miR_Mature_Clustering_Consensus_Plus10000
156miR_Mature_Preprocess10000
157mRNA_lincRNA_Clustering_Consensus_Plus10000
158mRNA_lincRNA_CNMF10000
159mRNA_Preprocess10000
160mRNA_protein_coding_Clustering_CNMF10000
161mRNA_protein_coding_Clustering_Consensus_Plus10000
162Mutation_APOBEC10000
163Mutation_CoOccurrence10000
164Mutation_Signature10000
165Pathway_GSEA_mRNA10000
166Aggregate_AnalysisFeatures01000
167Aggregate_Gene_Status10000
168Aggregate_Molecular_Subtype_Clusters01000
169Append_CustomClinical01000
170CoMut2.010000
171CoMut2CV10000
172CoMutCV10000
173CopyNumber_Clustering_CNMF10000
174CopyNumber_Clustering_CNMF_thresholded10000
175CopyNumber_Gistic201000
176CopyNumber_Gistic2_Postprocess_Focal10000
177CopyNumberLowPass_Gistic201000
178Correlate_Clinical_vs_CopyNumber_Arm10000
179Correlate_Clinical_vs_CopyNumber_Focal10000
180Correlate_Clinical_vs_Methylation10000
181Correlate_Clinical_vs_miR10000
182Correlate_Clinical_vs_miRseq10000
183Correlate_Clinical_vs_Molecular_Subtypes10000
184Correlate_Clinical_vs_mRNA10000
185Correlate_Clinical_vs_mRNAseq10000
186Correlate_Clinical_vs_Mutation10000
187Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
188Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
189Correlate_Clinical_vs_MutationRate10000
190Correlate_Clinical_vs_RPPA10000
191Correlate_CopyNumber_vs_miR10000
192Correlate_CopyNumber_vs_mRNA10000
193Correlate_CopyNumber_vs_mRNAseq10000
194Correlate_Methylation_vs_mRNA01000
195Correlate_molecularSubtype_vs_CopyNumber_Arm10000
196Correlate_molecularSubtype_vs_CopyNumber_Focal10000
197Correlate_molecularSubtype_vs_Mutation10000
198Correlate_mRNAseq_vs_Mutation_APOBEC10000
199GenerateStickFigures2.010000
200GenerateStickFigures2CV10000
201GenerateStickFiguresCV10000
202iClusterPlus10000
203LegoPlotter2.010000
204LegoPlotter2CV10000
205LegoPlotterCV10000
206Methylation_Clustering_CNMF01000
207miR_Clustering_CNMF10000
208miR_Clustering_Consensus_Plus10000
209miR_FindDirectTargets10000
210miRseq_Clustering_CNMF01000
211miRseq_Clustering_Consensus_Plus01000
212miRseq_FindDirectTargets01000
213miRseq_Mature_Clustering_CNMF01000
214miRseq_Mature_Clustering_Consensus_Plus01000
215mRNA_Clustering_CNMF10000
216mRNA_Clustering_Consensus_Plus10000
217mRNAseq_Clustering_CNMF01000
218mRNAseq_Clustering_Consensus_Plus00010
219Mutation_APOBEC10000
220Mutation_Assessor10000
221Mutation_CHASM10000
222Mutation_CoOccurrence10000
223Mutation_CoOccurrence_Custom10000
224MutSigNozzleReport2.010000
225MutSigNozzleReport2CV10000
226MutSigNozzleReportCV10000
227MutSigPreprocess2.010000
228MutSigRun2.010000
229MutSigRun2CV10000
230MutSigRunCV10000
231Paradigm_mRNA10000
232Paradigm_mRNA_And_CopyNumber10000
233Paradigm_Prepare_mRNA10000
234Paradigm_Prepare_mRNA_And_Copy_Number10000
235Paradigm_Prepare_RNASeq10000
236Paradigm_Prepare_RNASeq_And_Copy_Number10000
237Paradigm_Preprocess_mRNA10000
238ParadigmPreprocess_mRNA10000
239Paradigm_Preprocess_mRNA_And_Copy_Number10000
240ParadigmPreprocess_RNASeq01000
241Paradigm_Preprocess_RNASeq10000
242Paradigm_Preprocess_RNASeq_And_Copy_Number10000
243Paradigm_Report_Preprocess_mRNA10000
244Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
245Paradigm_Report_Preprocess_RNASeq10000
246Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
247Paradigm_RNASeq10000
248Paradigm_RNASeq_And_Copy_Number10000
249Pathway_FindEnrichedGenes10000
250Pathway_GSEA_mRNAseq10000
251Pathway_Hotnet10000
252Pathway_Overlaps_MSigDB_MutSig2CV10000
253Pathway_Paradigm_mRNA10000
254Pathway_Paradigm_mRNA_And_Copy_Number10000
255Pathway_Paradigm_RNASeq10000
256Pathway_Paradigm_RNASeq_And_Copy_Number10000
257ProcessCoverageForMutSig2.010000
258RPPA_Clustering_CNMF01000
259RPPA_Clustering_Consensus_Plus01000
260TP-Aggregate_AnalysisFeatures01000
261TP-Aggregate_Gene_Status10000
262TP-Aggregate_Molecular_Subtype_Clusters01000
263TP-Append_CustomClinical01000
264TP-CoMut2.010000
265TP-CoMut2CV10000
266TP-CoMutCV10000
267TP-CopyNumber_Clustering_CNMF10000
268TP-CopyNumber_Clustering_CNMF_thresholded10000
269TP-CopyNumber_Gistic201000
270TP-CopyNumber_Gistic2_Postprocess_Focal10000
271TP-CopyNumberLowPass_Gistic201000
272TP-Correlate_Clinical_vs_CopyNumber_Arm10000
273TP-Correlate_Clinical_vs_CopyNumber_Focal10000
274TP-Correlate_Clinical_vs_Methylation10000
275TP-Correlate_Clinical_vs_miR10000
276TP-Correlate_Clinical_vs_miRseq10000
277TP-Correlate_Clinical_vs_Molecular_Subtypes10000
278TP-Correlate_Clinical_vs_mRNA10000
279TP-Correlate_Clinical_vs_mRNAseq10000
280TP-Correlate_Clinical_vs_Mutation10000
281TP-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
282TP-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
283TP-Correlate_Clinical_vs_MutationRate10000
284TP-Correlate_Clinical_vs_RPPA10000
285TP-Correlate_CopyNumber_vs_miR10000
286TP-Correlate_CopyNumber_vs_mRNA10000
287TP-Correlate_CopyNumber_vs_mRNAseq10000
288TP-Correlate_Methylation_vs_mRNA01000
289TP-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
290TP-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
291TP-Correlate_molecularSubtype_vs_Mutation10000
292TP-Correlate_mRNAseq_vs_Mutation_APOBEC10000
293TP-GenerateStickFigures2.010000
294TP-GenerateStickFigures2CV10000
295TP-GenerateStickFiguresCV10000
296TP-iClusterPlus10000
297TP-LegoPlotter2.010000
298TP-LegoPlotter2CV10000
299TP-LegoPlotterCV10000
300TP-Methylation_Clustering_CNMF01000
301TP-miR_Clustering_CNMF10000
302TP-miR_Clustering_Consensus_Plus10000
303TP-miR_FindDirectTargets10000
304TP-miRseq_Clustering_CNMF01000
305TP-miRseq_Clustering_Consensus_Plus01000
306TP-miRseq_FindDirectTargets01000
307TP-miRseq_Mature_Clustering_CNMF01000
308TP-miRseq_Mature_Clustering_Consensus_Plus01000
309TP-mRNA_Clustering_CNMF10000
310TP-mRNA_Clustering_Consensus_Plus10000
311TP-mRNAseq_Clustering_CNMF01000
312TP-mRNAseq_Clustering_Consensus_Plus00010
313TP-Mutation_APOBEC10000
314TP-Mutation_Assessor10000
315TP-Mutation_CHASM10000
316TP-Mutation_CoOccurrence10000
317TP-Mutation_CoOccurrence_Custom10000
318TP-MutSigNozzleReport2.010000
319TP-MutSigNozzleReport2CV10000
320TP-MutSigNozzleReportCV10000
321TP-MutSigPreprocess2.001000
322TP-MutSigRun2.010000
323TP-MutSigRun2CV01000
324TP-MutSigRunCV01000
325TP-Paradigm_mRNA10000
326TP-Paradigm_mRNA_And_CopyNumber10000
327TP-Paradigm_Prepare_mRNA10000
328TP-Paradigm_Prepare_mRNA_And_Copy_Number10000
329TP-Paradigm_Prepare_RNASeq10000
330TP-Paradigm_Prepare_RNASeq_And_Copy_Number10000
331TP-Paradigm_Preprocess_mRNA10000
332TP-ParadigmPreprocess_mRNA10000
333TP-Paradigm_Preprocess_mRNA_And_Copy_Number10000
334TP-ParadigmPreprocess_RNASeq01000
335TP-Paradigm_Preprocess_RNASeq10000
336TP-Paradigm_Preprocess_RNASeq_And_Copy_Number10000
337TP-Paradigm_Report_Preprocess_mRNA10000
338TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
339TP-Paradigm_Report_Preprocess_RNASeq10000
340TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
341TP-Paradigm_RNASeq10000
342TP-Paradigm_RNASeq_And_Copy_Number10000
343TP-Pathway_FindEnrichedGenes10000
344TP-Pathway_GSEA_mRNAseq10000
345TP-Pathway_Hotnet10000
346TP-Pathway_Overlaps_MSigDB_MutSig2CV10000
347TP-Pathway_Paradigm_mRNA10000
348TP-Pathway_Paradigm_mRNA_And_Copy_Number10000
349TP-Pathway_Paradigm_RNASeq10000
350TP-Pathway_Paradigm_RNASeq_And_Copy_Number10000
351TP-ProcessCoverageForMutSig2.010000
352TP-RPPA_Clustering_CNMF01000
353TP-RPPA_Clustering_Consensus_Plus01000
354TM-Aggregate_AnalysisFeatures01000
355TM-Aggregate_Gene_Status10000
356TM-Aggregate_Molecular_Subtype_Clusters10000
357TM-Append_CustomClinical10000
358TM-CoMut2.010000
359TM-CoMut2CV10000
360TM-CoMutCV10000
361TM-CopyNumber_Clustering_CNMF10000
362TM-CopyNumber_Clustering_CNMF_thresholded10000
363TM-CopyNumber_Gistic201000
364TM-CopyNumber_Gistic2_Postprocess_Focal10000
365TM-CopyNumberLowPass_Gistic210000
366TM-Correlate_Clinical_vs_CopyNumber_Arm10000
367TM-Correlate_Clinical_vs_CopyNumber_Focal10000
368TM-Correlate_Clinical_vs_Methylation10000
369TM-Correlate_Clinical_vs_miR10000
370TM-Correlate_Clinical_vs_miRseq10000
371TM-Correlate_Clinical_vs_Molecular_Subtypes10000
372TM-Correlate_Clinical_vs_mRNA10000
373TM-Correlate_Clinical_vs_mRNAseq10000
374TM-Correlate_Clinical_vs_Mutation10000
375TM-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
376TM-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
377TM-Correlate_Clinical_vs_MutationRate10000
378TM-Correlate_Clinical_vs_RPPA10000
379TM-Correlate_CopyNumber_vs_miR10000
380TM-Correlate_CopyNumber_vs_mRNA10000
381TM-Correlate_CopyNumber_vs_mRNAseq10000
382TM-Correlate_Methylation_vs_mRNA10000
383TM-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
384TM-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
385TM-Correlate_molecularSubtype_vs_Mutation10000
386TM-Correlate_mRNAseq_vs_Mutation_APOBEC10000
387TM-GenerateStickFigures2.010000
388TM-GenerateStickFigures2CV10000
389TM-GenerateStickFiguresCV10000
390TM-iClusterPlus10000
391TM-LegoPlotter2.010000
392TM-LegoPlotter2CV10000
393TM-LegoPlotterCV10000
394TM-Methylation_Clustering_CNMF01000
395TM-miR_Clustering_CNMF10000
396TM-miR_Clustering_Consensus_Plus10000
397TM-miR_FindDirectTargets10000
398TM-miRseq_Clustering_CNMF10000
399TM-miRseq_Clustering_Consensus_Plus10000
400TM-miRseq_FindDirectTargets10000
401TM-miRseq_Mature_Clustering_CNMF10000
402TM-miRseq_Mature_Clustering_Consensus_Plus10000
403TM-mRNA_Clustering_CNMF10000
404TM-mRNA_Clustering_Consensus_Plus10000
405TM-mRNAseq_Clustering_CNMF10000
406TM-mRNAseq_Clustering_Consensus_Plus10000
407TM-Mutation_APOBEC10000
408TM-Mutation_Assessor10000
409TM-Mutation_CHASM10000
410TM-Mutation_CoOccurrence10000
411TM-Mutation_CoOccurrence_Custom10000
412TM-MutSigNozzleReport2.010000
413TM-MutSigNozzleReport2CV10000
414TM-MutSigNozzleReportCV10000
415TM-MutSigPreprocess2.010000
416TM-MutSigRun2.010000
417TM-MutSigRun2CV10000
418TM-MutSigRunCV10000
419TM-Paradigm_mRNA10000
420TM-Paradigm_mRNA_And_CopyNumber10000
421TM-Paradigm_Prepare_mRNA10000
422TM-Paradigm_Prepare_mRNA_And_Copy_Number10000
423TM-Paradigm_Prepare_RNASeq10000
424TM-Paradigm_Prepare_RNASeq_And_Copy_Number10000
425TM-Paradigm_Preprocess_mRNA10000
426TM-ParadigmPreprocess_mRNA10000
427TM-Paradigm_Preprocess_mRNA_And_Copy_Number10000
428TM-ParadigmPreprocess_RNASeq01000
429TM-Paradigm_Preprocess_RNASeq10000
430TM-Paradigm_Preprocess_RNASeq_And_Copy_Number10000
431TM-Paradigm_Report_Preprocess_mRNA10000
432TM-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
433TM-Paradigm_Report_Preprocess_RNASeq10000
434TM-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
435TM-Paradigm_RNASeq10000
436TM-Paradigm_RNASeq_And_Copy_Number10000
437TM-Pathway_FindEnrichedGenes10000
438TM-Pathway_GSEA_mRNAseq10000
439TM-Pathway_Hotnet10000
440TM-Pathway_Overlaps_MSigDB_MutSig2CV10000
441TM-Pathway_Paradigm_mRNA10000
442TM-Pathway_Paradigm_mRNA_And_Copy_Number10000
443TM-Pathway_Paradigm_RNASeq10000
444TM-Pathway_Paradigm_RNASeq_And_Copy_Number10000
445TM-ProcessCoverageForMutSig2.010000
446TM-RPPA_Clustering_CNMF10000
447TM-RPPA_Clustering_Consensus_Plus10000
448NT-Aggregate_AnalysisFeatures01000
449NT-Aggregate_Gene_Status10000
450NT-Aggregate_Molecular_Subtype_Clusters01000
451NT-Append_CustomClinical01000
452NT-CoMut2.010000
453NT-CoMut2CV10000
454NT-CoMutCV10000
455NT-CopyNumber_Clustering_CNMF10000
456NT-CopyNumber_Clustering_CNMF_thresholded10000
457NT-CopyNumber_Gistic201000
458NT-CopyNumber_Gistic2_Postprocess_Focal10000
459NT-CopyNumberLowPass_Gistic201000
460NT-Correlate_Clinical_vs_CopyNumber_Arm10000
461NT-Correlate_Clinical_vs_CopyNumber_Focal10000
462NT-Correlate_Clinical_vs_Methylation10000
463NT-Correlate_Clinical_vs_miR10000
464NT-Correlate_Clinical_vs_miRseq10000
465NT-Correlate_Clinical_vs_Molecular_Subtypes10000
466NT-Correlate_Clinical_vs_mRNA10000
467NT-Correlate_Clinical_vs_mRNAseq10000
468NT-Correlate_Clinical_vs_Mutation10000
469NT-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
470NT-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
471NT-Correlate_Clinical_vs_MutationRate10000
472NT-Correlate_Clinical_vs_RPPA10000
473NT-Correlate_CopyNumber_vs_miR10000
474NT-Correlate_CopyNumber_vs_mRNA10000
475NT-Correlate_CopyNumber_vs_mRNAseq10000
476NT-Correlate_Methylation_vs_mRNA10000
477NT-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
478NT-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
479NT-Correlate_molecularSubtype_vs_Mutation10000
480NT-Correlate_mRNAseq_vs_Mutation_APOBEC10000
481NT-GenerateStickFigures2.010000
482NT-GenerateStickFigures2CV10000
483NT-GenerateStickFiguresCV10000
484NT-iClusterPlus10000
485NT-LegoPlotter2.010000
486NT-LegoPlotter2CV10000
487NT-LegoPlotterCV10000
488NT-Methylation_Clustering_CNMF01000
489NT-miR_Clustering_CNMF10000
490NT-miR_Clustering_Consensus_Plus10000
491NT-miR_FindDirectTargets10000
492NT-miRseq_Clustering_CNMF01000
493NT-miRseq_Clustering_Consensus_Plus01000
494NT-miRseq_FindDirectTargets01000
495NT-miRseq_Mature_Clustering_CNMF01000
496NT-miRseq_Mature_Clustering_Consensus_Plus01000
497NT-mRNA_Clustering_CNMF10000
498NT-mRNA_Clustering_Consensus_Plus10000
499NT-mRNAseq_Clustering_CNMF01000
500NT-mRNAseq_Clustering_Consensus_Plus00010
501NT-Mutation_APOBEC10000
502NT-Mutation_Assessor10000
503NT-Mutation_CHASM10000
504NT-Mutation_CoOccurrence10000
505NT-Mutation_CoOccurrence_Custom10000
506NT-MutSigNozzleReport2.010000
507NT-MutSigNozzleReport2CV10000
508NT-MutSigNozzleReportCV10000
509NT-MutSigPreprocess2.010000
510NT-MutSigRun2.010000
511NT-MutSigRun2CV10000
512NT-MutSigRunCV10000
513NT-Paradigm_mRNA10000
514NT-Paradigm_mRNA_And_CopyNumber10000
515NT-Paradigm_Prepare_mRNA10000
516NT-Paradigm_Prepare_mRNA_And_Copy_Number10000
517NT-Paradigm_Prepare_RNASeq10000
518NT-Paradigm_Prepare_RNASeq_And_Copy_Number10000
519NT-Paradigm_Preprocess_mRNA10000
520NT-ParadigmPreprocess_mRNA10000
521NT-Paradigm_Preprocess_mRNA_And_Copy_Number10000
522NT-ParadigmPreprocess_RNASeq01000
523NT-Paradigm_Preprocess_RNASeq10000
524NT-Paradigm_Preprocess_RNASeq_And_Copy_Number10000
525NT-Paradigm_Report_Preprocess_mRNA10000
526NT-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
527NT-Paradigm_Report_Preprocess_RNASeq10000
528NT-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
529NT-Paradigm_RNASeq10000
530NT-Paradigm_RNASeq_And_Copy_Number10000
531NT-Pathway_FindEnrichedGenes10000
532NT-Pathway_GSEA_mRNAseq10000
533NT-Pathway_Hotnet10000
534NT-Pathway_Overlaps_MSigDB_MutSig2CV10000
535NT-Pathway_Paradigm_mRNA10000
536NT-Pathway_Paradigm_mRNA_And_Copy_Number10000
537NT-Pathway_Paradigm_RNASeq10000
538NT-Pathway_Paradigm_RNASeq_And_Copy_Number10000
539NT-ProcessCoverageForMutSig2.010000
540NT-RPPA_Clustering_CNMF10000
541NT-RPPA_Clustering_Consensus_Plus10000
542NB-Aggregate_AnalysisFeatures01000
543NB-Aggregate_Gene_Status10000
544NB-Aggregate_Molecular_Subtype_Clusters10000
545NB-Append_CustomClinical01000
546NB-CoMut2.010000
547NB-CoMut2CV10000
548NB-CoMutCV10000
549NB-CopyNumber_Clustering_CNMF10000
550NB-CopyNumber_Clustering_CNMF_thresholded10000
551NB-CopyNumber_Gistic201000
552NB-CopyNumber_Gistic2_Postprocess_Focal10000
553NB-CopyNumberLowPass_Gistic201000
554NB-Correlate_Clinical_vs_CopyNumber_Arm10000
555NB-Correlate_Clinical_vs_CopyNumber_Focal10000
556NB-Correlate_Clinical_vs_Methylation10000
557NB-Correlate_Clinical_vs_miR10000
558NB-Correlate_Clinical_vs_miRseq10000
559NB-Correlate_Clinical_vs_Molecular_Subtypes10000
560NB-Correlate_Clinical_vs_mRNA10000
561NB-Correlate_Clinical_vs_mRNAseq10000
562NB-Correlate_Clinical_vs_Mutation10000
563NB-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
564NB-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
565NB-Correlate_Clinical_vs_MutationRate10000
566NB-Correlate_Clinical_vs_RPPA10000
567NB-Correlate_CopyNumber_vs_miR10000
568NB-Correlate_CopyNumber_vs_mRNA10000
569NB-Correlate_CopyNumber_vs_mRNAseq10000
570NB-Correlate_Methylation_vs_mRNA10000
571NB-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
572NB-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
573NB-Correlate_molecularSubtype_vs_Mutation10000
574NB-Correlate_mRNAseq_vs_Mutation_APOBEC10000
575NB-GenerateStickFigures2.010000
576NB-GenerateStickFigures2CV10000
577NB-GenerateStickFiguresCV10000
578NB-iClusterPlus10000
579NB-LegoPlotter2.010000
580NB-LegoPlotter2CV10000
581NB-LegoPlotterCV10000
582NB-Methylation_Clustering_CNMF10000
583NB-miR_Clustering_CNMF10000
584NB-miR_Clustering_Consensus_Plus10000
585NB-miR_FindDirectTargets10000
586NB-miRseq_Clustering_CNMF10000
587NB-miRseq_Clustering_Consensus_Plus10000
588NB-miRseq_FindDirectTargets10000
589NB-miRseq_Mature_Clustering_CNMF10000
590NB-miRseq_Mature_Clustering_Consensus_Plus10000
591NB-mRNA_Clustering_CNMF10000
592NB-mRNA_Clustering_Consensus_Plus10000
593NB-mRNAseq_Clustering_CNMF10000
594NB-mRNAseq_Clustering_Consensus_Plus10000
595NB-Mutation_APOBEC10000
596NB-Mutation_Assessor10000
597NB-Mutation_CHASM10000
598NB-Mutation_CoOccurrence10000
599NB-Mutation_CoOccurrence_Custom10000
600NB-MutSigNozzleReport2.010000
601NB-MutSigNozzleReport2CV10000
602NB-MutSigNozzleReportCV10000
603NB-MutSigPreprocess2.010000
604NB-MutSigRun2.010000
605NB-MutSigRun2CV10000
606NB-MutSigRunCV10000
607NB-Paradigm_mRNA10000
608NB-Paradigm_mRNA_And_CopyNumber10000
609NB-Paradigm_Prepare_mRNA10000
610NB-Paradigm_Prepare_mRNA_And_Copy_Number10000
611NB-Paradigm_Prepare_RNASeq10000
612NB-Paradigm_Prepare_RNASeq_And_Copy_Number10000
613NB-Paradigm_Preprocess_mRNA10000
614NB-ParadigmPreprocess_mRNA10000
615NB-Paradigm_Preprocess_mRNA_And_Copy_Number10000
616NB-Paradigm_Preprocess_RNASeq10000
617NB-ParadigmPreprocess_RNASeq10000
618NB-Paradigm_Preprocess_RNASeq_And_Copy_Number10000
619NB-Paradigm_Report_Preprocess_mRNA10000
620NB-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
621NB-Paradigm_Report_Preprocess_RNASeq10000
622NB-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
623NB-Paradigm_RNASeq10000
624NB-Paradigm_RNASeq_And_Copy_Number10000
625NB-Pathway_FindEnrichedGenes10000
626NB-Pathway_GSEA_mRNAseq10000
627NB-Pathway_Hotnet10000
628NB-Pathway_Overlaps_MSigDB_MutSig2CV10000
629NB-Pathway_Paradigm_mRNA10000
630NB-Pathway_Paradigm_mRNA_And_Copy_Number10000
631NB-Pathway_Paradigm_RNASeq10000
632NB-Pathway_Paradigm_RNASeq_And_Copy_Number10000
633NB-ProcessCoverageForMutSig2.010000
634NB-RPPA_Clustering_CNMF10000
635NB-RPPA_Clustering_Consensus_Plus10000
Total4936806410

This table generated on Thu Jan 26 11:04:15 2017