Broad GDAC Analyses Status
dev Run for Tumor Type: TCGA-CESC

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1Aggregate_AnalysisFeatures00001
2Aggregate_Molecular_Subtype_Clusters00010
3CopyNumber_Clustering_CNMF00010
4CopyNumber_Clustering_CNMF_thresholded00010
5CopyNumber_Gistic200010
6CopyNumber_Gistic2_Postprocess_Focal00010
7Correlate_Clinical_vs_CopyNumber_Arm00010
8Correlate_Clinical_vs_CopyNumber_Focal00010
9Correlate_Clinical_vs_Methylation10000
10Correlate_Clinical_vs_miR00010
11Correlate_Clinical_vs_Molecular_Subtypes00010
12Correlate_Clinical_vs_mRNA00010
13Correlate_Clinical_vs_Mutation10000
14Correlate_CopyNumber_vs_miR00010
15Correlate_CopyNumber_vs_mRNA00010
16Correlate_Methylation_vs_mRNA10000
17Correlate_molecularSubtype_vs_CopyNumber_Arm00010
18Correlate_molecularSubtype_vs_CopyNumber_Focal00010
19Methylation_Clustering_CNMF10000
20Methylation_Preprocess10000
21miR_FindDirectTargets00010
22miR_Mature_Clustering_CNMF00010
23miR_Mature_Clustering_Consensus_Plus00010
24miR_Mature_Preprocess00010
25mRNA_lincRNA_Clustering_Consensus_Plus00010
26mRNA_lincRNA_CNMF00010
27mRNA_Preprocess00010
28mRNA_protein_coding_Clustering_CNMF00010
29mRNA_protein_coding_Clustering_Consensus_Plus00010
30Mutation_APOBEC01000
31Mutation_CoOccurrence10000
32Mutation_Signature01000
33Pathway_GSEA_mRNA00010
34TP-Aggregate_AnalysisFeatures00010
35TP-Aggregate_Molecular_Subtype_Clusters00010
36TP-CopyNumber_Clustering_CNMF00010
37TP-CopyNumber_Clustering_CNMF_thresholded00010
38TP-CopyNumber_Gistic200010
39TP-CopyNumber_Gistic2_Postprocess_Focal00010
40TP-Correlate_Clinical_vs_CopyNumber_Arm00010
41TP-Correlate_Clinical_vs_CopyNumber_Focal00010
42TP-Correlate_Clinical_vs_Methylation10000
43TP-Correlate_Clinical_vs_miR00010
44TP-Correlate_Clinical_vs_Molecular_Subtypes00010
45TP-Correlate_Clinical_vs_mRNA00010
46TP-Correlate_Clinical_vs_Mutation10000
47TP-Correlate_CopyNumber_vs_miR00010
48TP-Correlate_CopyNumber_vs_mRNA00010
49TP-Correlate_Methylation_vs_mRNA10000
50TP-Correlate_molecularSubtype_vs_CopyNumber_Arm00010
51TP-Correlate_molecularSubtype_vs_CopyNumber_Focal00010
52TP-Methylation_Clustering_CNMF10000
53TP-Methylation_Preprocess10000
54TP-miR_FindDirectTargets00010
55TP-miR_Mature_Clustering_CNMF00010
56TP-miR_Mature_Clustering_Consensus_Plus00010
57TP-miR_Mature_Preprocess00010
58TP-mRNA_lincRNA_Clustering_Consensus_Plus00010
59TP-mRNA_lincRNA_CNMF00010
60TP-mRNA_Preprocess00010
61TP-mRNA_protein_coding_Clustering_CNMF00010
62TP-mRNA_protein_coding_Clustering_Consensus_Plus00010
63TP-Mutation_APOBEC01000
64TP-Mutation_CoOccurrence00010
65TP-Mutation_Signature01000
66TP-Pathway_GSEA_mRNA00010
67TM-Aggregate_AnalysisFeatures00010
68TM-Aggregate_Molecular_Subtype_Clusters10000
69TM-CopyNumber_Clustering_CNMF10000
70TM-CopyNumber_Clustering_CNMF_thresholded10000
71TM-CopyNumber_Gistic200010
72TM-CopyNumber_Gistic2_Postprocess_Focal00010
73TM-Correlate_Clinical_vs_CopyNumber_Arm00001
74TM-Correlate_Clinical_vs_CopyNumber_Focal00001
75TM-Correlate_Clinical_vs_Methylation10000
76TM-Correlate_Clinical_vs_miR10000
77TM-Correlate_Clinical_vs_Molecular_Subtypes10000
78TM-Correlate_Clinical_vs_mRNA00001
79TM-Correlate_Clinical_vs_Mutation10000
80TM-Correlate_CopyNumber_vs_miR10000
81TM-Correlate_CopyNumber_vs_mRNA00010
82TM-Correlate_Methylation_vs_mRNA10000
83TM-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
84TM-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
85TM-Methylation_Clustering_CNMF10000
86TM-Methylation_Preprocess10000
87TM-miR_FindDirectTargets10000
88TM-miR_Mature_Clustering_CNMF10000
89TM-miR_Mature_Clustering_Consensus_Plus10000
90TM-miR_Mature_Preprocess00010
91TM-mRNA_lincRNA_Clustering_Consensus_Plus00001
92TM-mRNA_lincRNA_CNMF00001
93TM-mRNA_Preprocess00010
94TM-mRNA_protein_coding_Clustering_CNMF00001
95TM-mRNA_protein_coding_Clustering_Consensus_Plus00001
96TM-Mutation_APOBEC01000
97TM-Mutation_CoOccurrence00001
98TM-Mutation_Signature01000
99TM-Pathway_GSEA_mRNA10000
100NT-Aggregate_AnalysisFeatures01000
101NT-Aggregate_Molecular_Subtype_Clusters10000
102NT-CopyNumber_Clustering_CNMF10000
103NT-CopyNumber_Clustering_CNMF_thresholded10000
104NT-CopyNumber_Gistic200001
105NT-CopyNumber_Gistic2_Postprocess_Focal10000
106NT-Correlate_Clinical_vs_CopyNumber_Arm10000
107NT-Correlate_Clinical_vs_CopyNumber_Focal10000
108NT-Correlate_Clinical_vs_Methylation10000
109NT-Correlate_Clinical_vs_miR10000
110NT-Correlate_Clinical_vs_Molecular_Subtypes10000
111NT-Correlate_Clinical_vs_mRNA00001
112NT-Correlate_Clinical_vs_Mutation10000
113NT-Correlate_CopyNumber_vs_miR10000
114NT-Correlate_CopyNumber_vs_mRNA10000
115NT-Correlate_Methylation_vs_mRNA10000
116NT-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
117NT-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
118NT-Methylation_Clustering_CNMF10000
119NT-Methylation_Preprocess10000
120NT-miR_FindDirectTargets10000
121NT-miR_Mature_Clustering_CNMF10000
122NT-miR_Mature_Clustering_Consensus_Plus10000
123NT-miR_Mature_Preprocess00010
124NT-mRNA_lincRNA_Clustering_Consensus_Plus00001
125NT-mRNA_lincRNA_CNMF00001
126NT-mRNA_Preprocess00010
127NT-mRNA_protein_coding_Clustering_CNMF00001
128NT-mRNA_protein_coding_Clustering_Consensus_Plus00001
129NT-Mutation_APOBEC10000
130NT-Mutation_CoOccurrence10000
131NT-Mutation_Signature10000
132NT-Pathway_GSEA_mRNA10000
133NB-Aggregate_AnalysisFeatures01000
134NB-Aggregate_Molecular_Subtype_Clusters10000
135NB-CopyNumber_Clustering_CNMF10000
136NB-CopyNumber_Clustering_CNMF_thresholded10000
137NB-CopyNumber_Gistic200001
138NB-CopyNumber_Gistic2_Postprocess_Focal10000
139NB-Correlate_Clinical_vs_CopyNumber_Arm10000
140NB-Correlate_Clinical_vs_CopyNumber_Focal10000
141NB-Correlate_Clinical_vs_Methylation10000
142NB-Correlate_Clinical_vs_miR10000
143NB-Correlate_Clinical_vs_Molecular_Subtypes10000
144NB-Correlate_Clinical_vs_mRNA10000
145NB-Correlate_Clinical_vs_Mutation10000
146NB-Correlate_CopyNumber_vs_miR10000
147NB-Correlate_CopyNumber_vs_mRNA10000
148NB-Correlate_Methylation_vs_mRNA10000
149NB-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
150NB-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
151NB-Methylation_Clustering_CNMF10000
152NB-Methylation_Preprocess10000
153NB-miR_FindDirectTargets10000
154NB-miR_Mature_Clustering_CNMF10000
155NB-miR_Mature_Clustering_Consensus_Plus10000
156NB-miR_Mature_Preprocess10000
157NB-mRNA_lincRNA_Clustering_Consensus_Plus10000
158NB-mRNA_lincRNA_CNMF10000
159NB-mRNA_Preprocess10000
160NB-mRNA_protein_coding_Clustering_CNMF10000
161NB-mRNA_protein_coding_Clustering_Consensus_Plus10000
162NB-Mutation_APOBEC10000
163NB-Mutation_CoOccurrence10000
164NB-Mutation_Signature10000
165NB-Pathway_GSEA_mRNA10000
Total83805816

This table generated on Thu Jan 26 11:04:16 2017