Broad GDAC Analyses Status
dev Run for Tumor Type: TCGA-COADREAD

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1Aggregate_AnalysisFeatures00001
2Aggregate_Molecular_Subtype_Clusters00010
3CopyNumber_Clustering_CNMF00010
4CopyNumber_Clustering_CNMF_thresholded00010
5CopyNumber_Gistic200010
6CopyNumber_Gistic2_Postprocess_Focal00010
7Correlate_Clinical_vs_CopyNumber_Arm00010
8Correlate_Clinical_vs_CopyNumber_Focal00010
9Correlate_Clinical_vs_Methylation10000
10Correlate_Clinical_vs_miR01000
11Correlate_Clinical_vs_Molecular_Subtypes00010
12Correlate_Clinical_vs_mRNA00010
13Correlate_Clinical_vs_Mutation10000
14Correlate_CopyNumber_vs_miR00010
15Correlate_CopyNumber_vs_mRNA01000
16Correlate_Methylation_vs_mRNA10000
17Correlate_molecularSubtype_vs_CopyNumber_Arm00010
18Correlate_molecularSubtype_vs_CopyNumber_Focal00010
19Methylation_Clustering_CNMF10000
20Methylation_Preprocess10000
21miR_FindDirectTargets01000
22miR_Mature_Clustering_CNMF00010
23miR_Mature_Clustering_Consensus_Plus00010
24miR_Mature_Preprocess00010
25mRNA_lincRNA_Clustering_Consensus_Plus00010
26mRNA_lincRNA_CNMF00010
27mRNA_Preprocess00010
28mRNA_protein_coding_Clustering_CNMF00010
29mRNA_protein_coding_Clustering_Consensus_Plus00010
30Mutation_APOBEC01000
31Mutation_CoOccurrence10000
32Mutation_Signature01000
33Pathway_GSEA_mRNA00010
34TR-Aggregate_AnalysisFeatures00010
35TR-Aggregate_Molecular_Subtype_Clusters10000
36TR-CopyNumber_Clustering_CNMF10000
37TR-CopyNumber_Clustering_CNMF_thresholded10000
38TR-CopyNumber_Gistic200010
39TR-CopyNumber_Gistic2_Postprocess_Focal00010
40TR-Correlate_Clinical_vs_CopyNumber_Arm10000
41TR-Correlate_Clinical_vs_CopyNumber_Focal10000
42TR-Correlate_Clinical_vs_Methylation10000
43TR-Correlate_Clinical_vs_miR10000
44TR-Correlate_Clinical_vs_Molecular_Subtypes10000
45TR-Correlate_Clinical_vs_mRNA10000
46TR-Correlate_Clinical_vs_Mutation10000
47TR-Correlate_CopyNumber_vs_miR10000
48TR-Correlate_CopyNumber_vs_mRNA00010
49TR-Correlate_Methylation_vs_mRNA10000
50TR-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
51TR-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
52TR-Methylation_Clustering_CNMF10000
53TR-Methylation_Preprocess10000
54TR-miR_FindDirectTargets10000
55TR-miR_Mature_Clustering_CNMF10000
56TR-miR_Mature_Clustering_Consensus_Plus10000
57TR-miR_Mature_Preprocess00010
58TR-mRNA_lincRNA_Clustering_Consensus_Plus00001
59TR-mRNA_lincRNA_CNMF00001
60TR-mRNA_Preprocess00010
61TR-mRNA_protein_coding_Clustering_CNMF00001
62TR-mRNA_protein_coding_Clustering_Consensus_Plus00001
63TR-Mutation_APOBEC01000
64TR-Mutation_CoOccurrence00001
65TR-Mutation_Signature01000
66TR-Pathway_GSEA_mRNA10000
67TP-Aggregate_AnalysisFeatures00001
68TP-Aggregate_Molecular_Subtype_Clusters00010
69TP-CopyNumber_Clustering_CNMF00010
70TP-CopyNumber_Clustering_CNMF_thresholded00010
71TP-CopyNumber_Gistic200010
72TP-CopyNumber_Gistic2_Postprocess_Focal00010
73TP-Correlate_Clinical_vs_CopyNumber_Arm00010
74TP-Correlate_Clinical_vs_CopyNumber_Focal00010
75TP-Correlate_Clinical_vs_Methylation10000
76TP-Correlate_Clinical_vs_miR01000
77TP-Correlate_Clinical_vs_Molecular_Subtypes00010
78TP-Correlate_Clinical_vs_mRNA00010
79TP-Correlate_Clinical_vs_Mutation10000
80TP-Correlate_CopyNumber_vs_miR00010
81TP-Correlate_CopyNumber_vs_mRNA00010
82TP-Correlate_Methylation_vs_mRNA10000
83TP-Correlate_molecularSubtype_vs_CopyNumber_Arm00010
84TP-Correlate_molecularSubtype_vs_CopyNumber_Focal00010
85TP-Methylation_Clustering_CNMF10000
86TP-Methylation_Preprocess10000
87TP-miR_FindDirectTargets00010
88TP-miR_Mature_Clustering_CNMF00010
89TP-miR_Mature_Clustering_Consensus_Plus00010
90TP-miR_Mature_Preprocess00010
91TP-mRNA_lincRNA_Clustering_Consensus_Plus00010
92TP-mRNA_lincRNA_CNMF00010
93TP-mRNA_Preprocess00010
94TP-mRNA_protein_coding_Clustering_CNMF00010
95TP-mRNA_protein_coding_Clustering_Consensus_Plus00010
96TP-Mutation_APOBEC01000
97TP-Mutation_CoOccurrence10000
98TP-Mutation_Signature01000
99TP-Pathway_GSEA_mRNA00001
100TM-Aggregate_AnalysisFeatures01000
101TM-Aggregate_Molecular_Subtype_Clusters10000
102TM-CopyNumber_Clustering_CNMF10000
103TM-CopyNumber_Clustering_CNMF_thresholded10000
104TM-CopyNumber_Gistic200001
105TM-CopyNumber_Gistic2_Postprocess_Focal10000
106TM-Correlate_Clinical_vs_CopyNumber_Arm10000
107TM-Correlate_Clinical_vs_CopyNumber_Focal10000
108TM-Correlate_Clinical_vs_Methylation10000
109TM-Correlate_Clinical_vs_miR10000
110TM-Correlate_Clinical_vs_Molecular_Subtypes10000
111TM-Correlate_Clinical_vs_mRNA10000
112TM-Correlate_Clinical_vs_Mutation10000
113TM-Correlate_CopyNumber_vs_miR10000
114TM-Correlate_CopyNumber_vs_mRNA10000
115TM-Correlate_Methylation_vs_mRNA10000
116TM-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
117TM-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
118TM-Methylation_Clustering_CNMF10000
119TM-Methylation_Preprocess10000
120TM-miR_FindDirectTargets10000
121TM-miR_Mature_Clustering_CNMF10000
122TM-miR_Mature_Clustering_Consensus_Plus10000
123TM-miR_Mature_Preprocess00010
124TM-mRNA_lincRNA_Clustering_Consensus_Plus00001
125TM-mRNA_lincRNA_CNMF00001
126TM-mRNA_Preprocess00010
127TM-mRNA_protein_coding_Clustering_CNMF00001
128TM-mRNA_protein_coding_Clustering_Consensus_Plus00001
129TM-Mutation_APOBEC01000
130TM-Mutation_CoOccurrence10000
131TM-Mutation_Signature01000
132TM-Pathway_GSEA_mRNA10000
133NT-Aggregate_AnalysisFeatures01000
134NT-Aggregate_Molecular_Subtype_Clusters00010
135NT-CopyNumber_Clustering_CNMF10000
136NT-CopyNumber_Clustering_CNMF_thresholded10000
137NT-CopyNumber_Gistic200001
138NT-CopyNumber_Gistic2_Postprocess_Focal10000
139NT-Correlate_Clinical_vs_CopyNumber_Arm10000
140NT-Correlate_Clinical_vs_CopyNumber_Focal10000
141NT-Correlate_Clinical_vs_Methylation10000
142NT-Correlate_Clinical_vs_miR10000
143NT-Correlate_Clinical_vs_Molecular_Subtypes00010
144NT-Correlate_Clinical_vs_mRNA00010
145NT-Correlate_Clinical_vs_Mutation10000
146NT-Correlate_CopyNumber_vs_miR10000
147NT-Correlate_CopyNumber_vs_mRNA10000
148NT-Correlate_Methylation_vs_mRNA10000
149NT-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
150NT-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
151NT-Methylation_Clustering_CNMF10000
152NT-Methylation_Preprocess10000
153NT-miR_FindDirectTargets10000
154NT-miR_Mature_Clustering_CNMF10000
155NT-miR_Mature_Clustering_Consensus_Plus10000
156NT-miR_Mature_Preprocess00010
157NT-mRNA_lincRNA_Clustering_Consensus_Plus00010
158NT-mRNA_lincRNA_CNMF00010
159NT-mRNA_Preprocess00010
160NT-mRNA_protein_coding_Clustering_CNMF00010
161NT-mRNA_protein_coding_Clustering_Consensus_Plus00010
162NT-Mutation_APOBEC10000
163NT-Mutation_CoOccurrence10000
164NT-Mutation_Signature10000
165NT-Pathway_GSEA_mRNA00010
166NB-Aggregate_AnalysisFeatures01000
167NB-Aggregate_Molecular_Subtype_Clusters10000
168NB-CopyNumber_Clustering_CNMF10000
169NB-CopyNumber_Clustering_CNMF_thresholded10000
170NB-CopyNumber_Gistic200001
171NB-CopyNumber_Gistic2_Postprocess_Focal10000
172NB-Correlate_Clinical_vs_CopyNumber_Arm10000
173NB-Correlate_Clinical_vs_CopyNumber_Focal10000
174NB-Correlate_Clinical_vs_Methylation10000
175NB-Correlate_Clinical_vs_miR10000
176NB-Correlate_Clinical_vs_Molecular_Subtypes10000
177NB-Correlate_Clinical_vs_mRNA10000
178NB-Correlate_Clinical_vs_Mutation10000
179NB-Correlate_CopyNumber_vs_miR10000
180NB-Correlate_CopyNumber_vs_mRNA10000
181NB-Correlate_Methylation_vs_mRNA10000
182NB-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
183NB-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
184NB-Methylation_Clustering_CNMF10000
185NB-Methylation_Preprocess10000
186NB-miR_FindDirectTargets10000
187NB-miR_Mature_Clustering_CNMF10000
188NB-miR_Mature_Clustering_Consensus_Plus10000
189NB-miR_Mature_Preprocess10000
190NB-mRNA_lincRNA_Clustering_Consensus_Plus10000
191NB-mRNA_lincRNA_CNMF10000
192NB-mRNA_Preprocess10000
193NB-mRNA_protein_coding_Clustering_CNMF10000
194NB-mRNA_protein_coding_Clustering_Consensus_Plus10000
195NB-Mutation_APOBEC10000
196NB-Mutation_CoOccurrence10000
197NB-Mutation_Signature10000
198NB-Pathway_GSEA_mRNA10000
199FFPE-Aggregate_AnalysisFeatures01000
200FFPE-Aggregate_Molecular_Subtype_Clusters10000
201FFPE-CopyNumber_Clustering_CNMF10000
202FFPE-CopyNumber_Clustering_CNMF_thresholded10000
203FFPE-CopyNumber_Gistic201000
204FFPE-CopyNumber_Gistic2_Postprocess_Focal10000
205FFPE-Correlate_Clinical_vs_CopyNumber_Arm10000
206FFPE-Correlate_Clinical_vs_CopyNumber_Focal10000
207FFPE-Correlate_Clinical_vs_Methylation10000
208FFPE-Correlate_Clinical_vs_miR10000
209FFPE-Correlate_Clinical_vs_Molecular_Subtypes10000
210FFPE-Correlate_Clinical_vs_mRNA10000
211FFPE-Correlate_Clinical_vs_Mutation10000
212FFPE-Correlate_CopyNumber_vs_miR10000
213FFPE-Correlate_CopyNumber_vs_mRNA10000
214FFPE-Correlate_Methylation_vs_mRNA10000
215FFPE-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
216FFPE-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
217FFPE-Methylation_Clustering_CNMF10000
218FFPE-Methylation_Preprocess10000
219FFPE-miR_FindDirectTargets10000
220FFPE-miR_Mature_Clustering_CNMF10000
221FFPE-miR_Mature_Clustering_Consensus_Plus10000
222FFPE-miR_Mature_Preprocess01000
223FFPE-mRNA_lincRNA_Clustering_Consensus_Plus10000
224FFPE-mRNA_lincRNA_CNMF10000
225FFPE-mRNA_Preprocess01000
226FFPE-mRNA_protein_coding_Clustering_CNMF10000
227FFPE-mRNA_protein_coding_Clustering_Consensus_Plus10000
228FFPE-Mutation_APOBEC01000
229FFPE-Mutation_CoOccurrence10000
230FFPE-Mutation_Signature01000
231FFPE-Pathway_GSEA_mRNA10000
Total1342106115

This table generated on Thu Jan 26 11:04:17 2017