Broad GDAC Analyses Status
dev Run for Tumor Type: TCGA-KIPAN

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1Aggregate_AnalysisFeatures01000
2Aggregate_Molecular_Subtype_Clusters00010
3CopyNumber_Clustering_CNMF00010
4CopyNumber_Clustering_CNMF_thresholded00010
5CopyNumber_Gistic200010
6CopyNumber_Gistic2_Postprocess_Focal00010
7Correlate_Clinical_vs_CopyNumber_Arm00010
8Correlate_Clinical_vs_CopyNumber_Focal00010
9Correlate_Clinical_vs_Methylation10000
10Correlate_Clinical_vs_miR01000
11Correlate_Clinical_vs_Molecular_Subtypes01000
12Correlate_Clinical_vs_mRNA00010
13Correlate_Clinical_vs_Mutation10000
14Correlate_CopyNumber_vs_miR01000
15Correlate_CopyNumber_vs_mRNA01000
16Correlate_Methylation_vs_mRNA10000
17Correlate_molecularSubtype_vs_CopyNumber_Arm01000
18Correlate_molecularSubtype_vs_CopyNumber_Focal01000
19Methylation_Clustering_CNMF10000
20Methylation_Preprocess10000
21miR_FindDirectTargets01000
22miR_Mature_Clustering_CNMF01000
23miR_Mature_Clustering_Consensus_Plus01000
24miR_Mature_Preprocess00010
25mRNA_lincRNA_Clustering_Consensus_Plus00010
26mRNA_lincRNA_CNMF00010
27mRNA_Preprocess00010
28mRNA_protein_coding_Clustering_CNMF00010
29mRNA_protein_coding_Clustering_Consensus_Plus00010
30Mutation_APOBEC01000
31Mutation_CoOccurrence10000
32Mutation_Signature01000
33Pathway_GSEA_mRNA01000
34TP-Aggregate_AnalysisFeatures00001
35TP-Aggregate_Molecular_Subtype_Clusters00010
36TP-CopyNumber_Clustering_CNMF00010
37TP-CopyNumber_Clustering_CNMF_thresholded00010
38TP-CopyNumber_Gistic200010
39TP-CopyNumber_Gistic2_Postprocess_Focal00010
40TP-Correlate_Clinical_vs_CopyNumber_Arm00010
41TP-Correlate_Clinical_vs_CopyNumber_Focal00010
42TP-Correlate_Clinical_vs_Methylation10000
43TP-Correlate_Clinical_vs_miR01000
44TP-Correlate_Clinical_vs_Molecular_Subtypes00010
45TP-Correlate_Clinical_vs_mRNA00010
46TP-Correlate_Clinical_vs_Mutation10000
47TP-Correlate_CopyNumber_vs_miR00010
48TP-Correlate_CopyNumber_vs_mRNA00010
49TP-Correlate_Methylation_vs_mRNA10000
50TP-Correlate_molecularSubtype_vs_CopyNumber_Arm00010
51TP-Correlate_molecularSubtype_vs_CopyNumber_Focal00010
52TP-Methylation_Clustering_CNMF10000
53TP-Methylation_Preprocess10000
54TP-miR_FindDirectTargets00010
55TP-miR_Mature_Clustering_CNMF00010
56TP-miR_Mature_Clustering_Consensus_Plus00010
57TP-miR_Mature_Preprocess00010
58TP-mRNA_lincRNA_Clustering_Consensus_Plus00010
59TP-mRNA_lincRNA_CNMF00010
60TP-mRNA_Preprocess00010
61TP-mRNA_protein_coding_Clustering_CNMF00010
62TP-mRNA_protein_coding_Clustering_Consensus_Plus00010
63TP-Mutation_APOBEC01000
64TP-Mutation_CoOccurrence10000
65TP-Mutation_Signature01000
66TP-Pathway_GSEA_mRNA00001
67TAP-Aggregate_AnalysisFeatures01000
68TAP-Aggregate_Molecular_Subtype_Clusters10000
69TAP-CopyNumber_Clustering_CNMF10000
70TAP-CopyNumber_Clustering_CNMF_thresholded10000
71TAP-CopyNumber_Gistic200001
72TAP-CopyNumber_Gistic2_Postprocess_Focal10000
73TAP-Correlate_Clinical_vs_CopyNumber_Arm10000
74TAP-Correlate_Clinical_vs_CopyNumber_Focal10000
75TAP-Correlate_Clinical_vs_Methylation10000
76TAP-Correlate_Clinical_vs_miR10000
77TAP-Correlate_Clinical_vs_Molecular_Subtypes10000
78TAP-Correlate_Clinical_vs_mRNA00001
79TAP-Correlate_Clinical_vs_Mutation10000
80TAP-Correlate_CopyNumber_vs_miR10000
81TAP-Correlate_CopyNumber_vs_mRNA10000
82TAP-Correlate_Methylation_vs_mRNA10000
83TAP-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
84TAP-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
85TAP-Methylation_Clustering_CNMF10000
86TAP-Methylation_Preprocess10000
87TAP-miR_FindDirectTargets10000
88TAP-miR_Mature_Clustering_CNMF10000
89TAP-miR_Mature_Clustering_Consensus_Plus10000
90TAP-miR_Mature_Preprocess00010
91TAP-mRNA_lincRNA_Clustering_Consensus_Plus00001
92TAP-mRNA_lincRNA_CNMF00001
93TAP-mRNA_Preprocess00010
94TAP-mRNA_protein_coding_Clustering_CNMF00001
95TAP-mRNA_protein_coding_Clustering_Consensus_Plus00001
96TAP-Mutation_APOBEC01000
97TAP-Mutation_CoOccurrence10000
98TAP-Mutation_Signature01000
99TAP-Pathway_GSEA_mRNA10000
100NT-Aggregate_AnalysisFeatures01000
101NT-Aggregate_Molecular_Subtype_Clusters00010
102NT-CopyNumber_Clustering_CNMF10000
103NT-CopyNumber_Clustering_CNMF_thresholded10000
104NT-CopyNumber_Gistic200001
105NT-CopyNumber_Gistic2_Postprocess_Focal10000
106NT-Correlate_Clinical_vs_CopyNumber_Arm10000
107NT-Correlate_Clinical_vs_CopyNumber_Focal10000
108NT-Correlate_Clinical_vs_Methylation10000
109NT-Correlate_Clinical_vs_miR01000
110NT-Correlate_Clinical_vs_Molecular_Subtypes00010
111NT-Correlate_Clinical_vs_mRNA00010
112NT-Correlate_Clinical_vs_Mutation10000
113NT-Correlate_CopyNumber_vs_miR10000
114NT-Correlate_CopyNumber_vs_mRNA10000
115NT-Correlate_Methylation_vs_mRNA10000
116NT-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
117NT-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
118NT-Methylation_Clustering_CNMF10000
119NT-Methylation_Preprocess10000
120NT-miR_FindDirectTargets00010
121NT-miR_Mature_Clustering_CNMF00010
122NT-miR_Mature_Clustering_Consensus_Plus00010
123NT-miR_Mature_Preprocess00010
124NT-mRNA_lincRNA_Clustering_Consensus_Plus00010
125NT-mRNA_lincRNA_CNMF00010
126NT-mRNA_Preprocess00010
127NT-mRNA_protein_coding_Clustering_CNMF00010
128NT-mRNA_protein_coding_Clustering_Consensus_Plus00010
129NT-Mutation_APOBEC10000
130NT-Mutation_CoOccurrence10000
131NT-Mutation_Signature10000
132NT-Pathway_GSEA_mRNA00010
133NB-Aggregate_AnalysisFeatures01000
134NB-Aggregate_Molecular_Subtype_Clusters10000
135NB-CopyNumber_Clustering_CNMF10000
136NB-CopyNumber_Clustering_CNMF_thresholded10000
137NB-CopyNumber_Gistic200001
138NB-CopyNumber_Gistic2_Postprocess_Focal10000
139NB-Correlate_Clinical_vs_CopyNumber_Arm10000
140NB-Correlate_Clinical_vs_CopyNumber_Focal10000
141NB-Correlate_Clinical_vs_Methylation10000
142NB-Correlate_Clinical_vs_miR10000
143NB-Correlate_Clinical_vs_Molecular_Subtypes10000
144NB-Correlate_Clinical_vs_mRNA10000
145NB-Correlate_Clinical_vs_Mutation10000
146NB-Correlate_CopyNumber_vs_miR10000
147NB-Correlate_CopyNumber_vs_mRNA10000
148NB-Correlate_Methylation_vs_mRNA10000
149NB-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
150NB-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
151NB-Methylation_Clustering_CNMF10000
152NB-Methylation_Preprocess10000
153NB-miR_FindDirectTargets10000
154NB-miR_Mature_Clustering_CNMF10000
155NB-miR_Mature_Clustering_Consensus_Plus10000
156NB-miR_Mature_Preprocess10000
157NB-mRNA_lincRNA_Clustering_Consensus_Plus10000
158NB-mRNA_lincRNA_CNMF10000
159NB-mRNA_Preprocess10000
160NB-mRNA_protein_coding_Clustering_CNMF10000
161NB-mRNA_protein_coding_Clustering_Consensus_Plus10000
162NB-Mutation_APOBEC10000
163NB-Mutation_CoOccurrence10000
164NB-Mutation_Signature10000
165NB-Pathway_GSEA_mRNA10000
166FFPE-Aggregate_AnalysisFeatures01000
167FFPE-Aggregate_Molecular_Subtype_Clusters10000
168FFPE-CopyNumber_Clustering_CNMF10000
169FFPE-CopyNumber_Clustering_CNMF_thresholded10000
170FFPE-CopyNumber_Gistic201000
171FFPE-CopyNumber_Gistic2_Postprocess_Focal10000
172FFPE-Correlate_Clinical_vs_CopyNumber_Arm10000
173FFPE-Correlate_Clinical_vs_CopyNumber_Focal10000
174FFPE-Correlate_Clinical_vs_Methylation10000
175FFPE-Correlate_Clinical_vs_miR10000
176FFPE-Correlate_Clinical_vs_Molecular_Subtypes10000
177FFPE-Correlate_Clinical_vs_mRNA10000
178FFPE-Correlate_Clinical_vs_Mutation10000
179FFPE-Correlate_CopyNumber_vs_miR10000
180FFPE-Correlate_CopyNumber_vs_mRNA10000
181FFPE-Correlate_Methylation_vs_mRNA10000
182FFPE-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
183FFPE-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
184FFPE-Methylation_Clustering_CNMF10000
185FFPE-Methylation_Preprocess10000
186FFPE-miR_FindDirectTargets10000
187FFPE-miR_Mature_Clustering_CNMF10000
188FFPE-miR_Mature_Clustering_Consensus_Plus10000
189FFPE-miR_Mature_Preprocess01000
190FFPE-mRNA_lincRNA_Clustering_Consensus_Plus10000
191FFPE-mRNA_lincRNA_CNMF10000
192FFPE-mRNA_Preprocess01000
193FFPE-mRNA_protein_coding_Clustering_CNMF10000
194FFPE-mRNA_protein_coding_Clustering_Consensus_Plus10000
195FFPE-Mutation_APOBEC01000
196FFPE-Mutation_CoOccurrence10000
197FFPE-Mutation_Signature01000
198FFPE-Pathway_GSEA_mRNA10000
Total1092805110

This table generated on Thu Jan 26 11:04:18 2017