Broad GDAC Analyses Status
dev Run for Tumor Type: TCGA-LIHC

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1Aggregate_AnalysisFeatures00001
2Aggregate_Molecular_Subtype_Clusters00010
3CopyNumber_Clustering_CNMF00010
4CopyNumber_Clustering_CNMF_thresholded00010
5CopyNumber_Gistic200010
6CopyNumber_Gistic2_Postprocess_Focal00010
7Correlate_Clinical_vs_CopyNumber_Arm00010
8Correlate_Clinical_vs_CopyNumber_Focal00010
9Correlate_Clinical_vs_Methylation10000
10Correlate_Clinical_vs_miR01000
11Correlate_Clinical_vs_Molecular_Subtypes00010
12Correlate_Clinical_vs_mRNA00010
13Correlate_Clinical_vs_Mutation10000
14Correlate_CopyNumber_vs_miR00010
15Correlate_CopyNumber_vs_mRNA00010
16Correlate_Methylation_vs_mRNA10000
17Correlate_molecularSubtype_vs_CopyNumber_Arm00010
18Correlate_molecularSubtype_vs_CopyNumber_Focal00010
19Methylation_Clustering_CNMF10000
20Methylation_Preprocess10000
21miR_FindDirectTargets00010
22miR_Mature_Clustering_CNMF00010
23miR_Mature_Clustering_Consensus_Plus00010
24miR_Mature_Preprocess00010
25mRNA_lincRNA_Clustering_Consensus_Plus00010
26mRNA_lincRNA_CNMF00010
27mRNA_Preprocess00010
28mRNA_protein_coding_Clustering_CNMF00010
29mRNA_protein_coding_Clustering_Consensus_Plus00010
30Mutation_APOBEC01000
31Mutation_CoOccurrence10000
32Mutation_Signature01000
33Pathway_GSEA_mRNA00010
34TR-Aggregate_AnalysisFeatures00010
35TR-Aggregate_Molecular_Subtype_Clusters10000
36TR-CopyNumber_Clustering_CNMF10000
37TR-CopyNumber_Clustering_CNMF_thresholded10000
38TR-CopyNumber_Gistic200010
39TR-CopyNumber_Gistic2_Postprocess_Focal00010
40TR-Correlate_Clinical_vs_CopyNumber_Arm10000
41TR-Correlate_Clinical_vs_CopyNumber_Focal10000
42TR-Correlate_Clinical_vs_Methylation10000
43TR-Correlate_Clinical_vs_miR10000
44TR-Correlate_Clinical_vs_Molecular_Subtypes10000
45TR-Correlate_Clinical_vs_mRNA10000
46TR-Correlate_Clinical_vs_Mutation10000
47TR-Correlate_CopyNumber_vs_miR10000
48TR-Correlate_CopyNumber_vs_mRNA00010
49TR-Correlate_Methylation_vs_mRNA10000
50TR-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
51TR-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
52TR-Methylation_Clustering_CNMF10000
53TR-Methylation_Preprocess10000
54TR-miR_FindDirectTargets10000
55TR-miR_Mature_Clustering_CNMF10000
56TR-miR_Mature_Clustering_Consensus_Plus10000
57TR-miR_Mature_Preprocess00010
58TR-mRNA_lincRNA_Clustering_Consensus_Plus00001
59TR-mRNA_lincRNA_CNMF00001
60TR-mRNA_Preprocess00010
61TR-mRNA_protein_coding_Clustering_CNMF00001
62TR-mRNA_protein_coding_Clustering_Consensus_Plus00001
63TR-Mutation_APOBEC01000
64TR-Mutation_CoOccurrence00001
65TR-Mutation_Signature01000
66TR-Pathway_GSEA_mRNA10000
67TP-Aggregate_AnalysisFeatures00010
68TP-Aggregate_Molecular_Subtype_Clusters00010
69TP-CopyNumber_Clustering_CNMF00010
70TP-CopyNumber_Clustering_CNMF_thresholded00010
71TP-CopyNumber_Gistic200010
72TP-CopyNumber_Gistic2_Postprocess_Focal00010
73TP-Correlate_Clinical_vs_CopyNumber_Arm00010
74TP-Correlate_Clinical_vs_CopyNumber_Focal00010
75TP-Correlate_Clinical_vs_Methylation10000
76TP-Correlate_Clinical_vs_miR01000
77TP-Correlate_Clinical_vs_Molecular_Subtypes00010
78TP-Correlate_Clinical_vs_mRNA00010
79TP-Correlate_Clinical_vs_Mutation10000
80TP-Correlate_CopyNumber_vs_miR00010
81TP-Correlate_CopyNumber_vs_mRNA00010
82TP-Correlate_Methylation_vs_mRNA10000
83TP-Correlate_molecularSubtype_vs_CopyNumber_Arm00010
84TP-Correlate_molecularSubtype_vs_CopyNumber_Focal00010
85TP-Methylation_Clustering_CNMF10000
86TP-Methylation_Preprocess10000
87TP-miR_FindDirectTargets00010
88TP-miR_Mature_Clustering_CNMF00010
89TP-miR_Mature_Clustering_Consensus_Plus00010
90TP-miR_Mature_Preprocess00010
91TP-mRNA_lincRNA_Clustering_Consensus_Plus00010
92TP-mRNA_lincRNA_CNMF00010
93TP-mRNA_Preprocess00010
94TP-mRNA_protein_coding_Clustering_CNMF00010
95TP-mRNA_protein_coding_Clustering_Consensus_Plus00010
96TP-Mutation_APOBEC01000
97TP-Mutation_CoOccurrence00010
98TP-Mutation_Signature01000
99TP-Pathway_GSEA_mRNA00010
100NT-Aggregate_AnalysisFeatures01000
101NT-Aggregate_Molecular_Subtype_Clusters00010
102NT-CopyNumber_Clustering_CNMF10000
103NT-CopyNumber_Clustering_CNMF_thresholded10000
104NT-CopyNumber_Gistic200001
105NT-CopyNumber_Gistic2_Postprocess_Focal10000
106NT-Correlate_Clinical_vs_CopyNumber_Arm10000
107NT-Correlate_Clinical_vs_CopyNumber_Focal10000
108NT-Correlate_Clinical_vs_Methylation10000
109NT-Correlate_Clinical_vs_miR01000
110NT-Correlate_Clinical_vs_Molecular_Subtypes00010
111NT-Correlate_Clinical_vs_mRNA00010
112NT-Correlate_Clinical_vs_Mutation10000
113NT-Correlate_CopyNumber_vs_miR10000
114NT-Correlate_CopyNumber_vs_mRNA10000
115NT-Correlate_Methylation_vs_mRNA10000
116NT-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
117NT-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
118NT-Methylation_Clustering_CNMF10000
119NT-Methylation_Preprocess10000
120NT-miR_FindDirectTargets00010
121NT-miR_Mature_Clustering_CNMF00010
122NT-miR_Mature_Clustering_Consensus_Plus00010
123NT-miR_Mature_Preprocess00010
124NT-mRNA_lincRNA_Clustering_Consensus_Plus00010
125NT-mRNA_lincRNA_CNMF00010
126NT-mRNA_Preprocess00010
127NT-mRNA_protein_coding_Clustering_CNMF00010
128NT-mRNA_protein_coding_Clustering_Consensus_Plus00010
129NT-Mutation_APOBEC10000
130NT-Mutation_CoOccurrence10000
131NT-Mutation_Signature10000
132NT-Pathway_GSEA_mRNA00010
133NB-Aggregate_AnalysisFeatures01000
134NB-Aggregate_Molecular_Subtype_Clusters10000
135NB-CopyNumber_Clustering_CNMF10000
136NB-CopyNumber_Clustering_CNMF_thresholded10000
137NB-CopyNumber_Gistic200001
138NB-CopyNumber_Gistic2_Postprocess_Focal10000
139NB-Correlate_Clinical_vs_CopyNumber_Arm10000
140NB-Correlate_Clinical_vs_CopyNumber_Focal10000
141NB-Correlate_Clinical_vs_Methylation10000
142NB-Correlate_Clinical_vs_miR10000
143NB-Correlate_Clinical_vs_Molecular_Subtypes10000
144NB-Correlate_Clinical_vs_mRNA10000
145NB-Correlate_Clinical_vs_Mutation10000
146NB-Correlate_CopyNumber_vs_miR10000
147NB-Correlate_CopyNumber_vs_mRNA10000
148NB-Correlate_Methylation_vs_mRNA10000
149NB-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
150NB-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
151NB-Methylation_Clustering_CNMF10000
152NB-Methylation_Preprocess10000
153NB-miR_FindDirectTargets10000
154NB-miR_Mature_Clustering_CNMF10000
155NB-miR_Mature_Clustering_Consensus_Plus10000
156NB-miR_Mature_Preprocess10000
157NB-mRNA_lincRNA_Clustering_Consensus_Plus10000
158NB-mRNA_lincRNA_CNMF10000
159NB-mRNA_Preprocess10000
160NB-mRNA_protein_coding_Clustering_CNMF10000
161NB-mRNA_protein_coding_Clustering_Consensus_Plus10000
162NB-Mutation_APOBEC10000
163NB-Mutation_CoOccurrence10000
164NB-Mutation_Signature10000
165NB-Pathway_GSEA_mRNA10000
Total79110678

This table generated on Thu Jan 26 11:04:19 2017