TCGA-UCS Samples Report
2016_08_23 Data Snapshot
Overview
Introduction
The Broad GDAC mirrors data from the DCC on a daily basis. Although all data is mirrored, not every sample is ingested into Firehose. There are three main mechanisms that filter samples to ensure that only the most scientifically relevant samples make it into our standard data and analyses runs. These three mechanisms are redactions, replicate filtering, and blacklisting. This report summarizes the data that is ingested into Firehose, describes the three filtering mechanisms, lists those samples that are removed, and gives all available annotations from the DCC's Annotation Manager.
Summary
There were 0 redactions, 0 replicate aliquots, 0 blacklisted aliquots, and 0 FFPE aliquots. The table below represents the sample counts for those samples that were ingested into firehose after filtering out redactions, replicates, and blacklisted data, and segregating FFPEs.
Table 1. This table provides a breakdown of sample counts on a per sample type and, if applicable, per subtype basis. Each count is a link to a table containing a list of the samples that comprise that count and details pertaining to each individual sample (e.g. platform, sequencing center, etc.). Please note, there are usually multiple protocols per data type, so there are typically many more rows than the count implies.
| Sample.Type | BCR | Clinical | CN | mRNA | miR | MAF |
|---|---|---|---|---|---|---|
| NB | 48 | 48 | 48 | 0 | 0 | 0 |
| NT | 6 | 6 | 6 | 0 | 0 | 0 |
| TP | 57 | 57 | 56 | 56 | 57 | 57 |
| Totals | 57 | 57 | 56 | 56 | 57 | 57 |
TCGA-UCS Blood Derived Normal BCR Data
Table S1.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-N5-A4R8 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RA | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RD | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RF | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RJ | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RM | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RN | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RO | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RT | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RU | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RV | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A59E | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A59F | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N6-A4V9 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N6-A4VG | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N7-A4Y0 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N7-A4Y5 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N7-A4Y8 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N7-A59B | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N8-A4PI | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N8-A4PL | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N8-A4PM | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N8-A4PN | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N8-A4PO | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N8-A4PP | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N8-A4PQ | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N8-A56S | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N9-A4Q1 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N9-A4Q3 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N9-A4Q4 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N9-A4Q7 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NA-A4QV | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NA-A4QW | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NA-A4QX | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NA-A4QY | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NA-A4R0 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NA-A4R1 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NA-A5I1 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-ND-A4WA | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-ND-A4WC | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-ND-A4WF | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NF-A4WU | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NF-A4X2 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NF-A5CP | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NG-A4VU | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NG-A4VW | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-QM-A5NM | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-QN-A5NN | (TODO) -- GDC | clinical__biospecimen |
TCGA-UCS Blood Derived Normal Clinical Data
Table S2.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-N5-A4R8 | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RA | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RD | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RF | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RJ | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RM | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RN | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RO | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RT | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RU | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RV | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A59E | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A59F | (TODO) -- GDC | clinical__primary | |
| TCGA-N6-A4V9 | (TODO) -- GDC | clinical__primary | |
| TCGA-N6-A4VG | (TODO) -- GDC | clinical__primary | |
| TCGA-N7-A4Y0 | (TODO) -- GDC | clinical__primary | |
| TCGA-N7-A4Y5 | (TODO) -- GDC | clinical__primary | |
| TCGA-N7-A4Y8 | (TODO) -- GDC | clinical__primary | |
| TCGA-N7-A59B | (TODO) -- GDC | clinical__primary | |
| TCGA-N8-A4PI | (TODO) -- GDC | clinical__primary | |
| TCGA-N8-A4PL | (TODO) -- GDC | clinical__primary | |
| TCGA-N8-A4PM | (TODO) -- GDC | clinical__primary | |
| TCGA-N8-A4PN | (TODO) -- GDC | clinical__primary | |
| TCGA-N8-A4PO | (TODO) -- GDC | clinical__primary | |
| TCGA-N8-A4PP | (TODO) -- GDC | clinical__primary | |
| TCGA-N8-A4PQ | (TODO) -- GDC | clinical__primary | |
| TCGA-N8-A56S | (TODO) -- GDC | clinical__primary | |
| TCGA-N9-A4Q1 | (TODO) -- GDC | clinical__primary | |
| TCGA-N9-A4Q3 | (TODO) -- GDC | clinical__primary | |
| TCGA-N9-A4Q4 | (TODO) -- GDC | clinical__primary | |
| TCGA-N9-A4Q7 | (TODO) -- GDC | clinical__primary | |
| TCGA-NA-A4QV | (TODO) -- GDC | clinical__primary | |
| TCGA-NA-A4QW | (TODO) -- GDC | clinical__primary | |
| TCGA-NA-A4QX | (TODO) -- GDC | clinical__primary | |
| TCGA-NA-A4QY | (TODO) -- GDC | clinical__primary | |
| TCGA-NA-A4R0 | (TODO) -- GDC | clinical__primary | |
| TCGA-NA-A4R1 | (TODO) -- GDC | clinical__primary | |
| TCGA-NA-A5I1 | (TODO) -- GDC | clinical__primary | |
| TCGA-ND-A4WA | (TODO) -- GDC | clinical__primary | |
| TCGA-ND-A4WC | (TODO) -- GDC | clinical__primary | |
| TCGA-ND-A4WF | (TODO) -- GDC | clinical__primary | |
| TCGA-NF-A4WU | (TODO) -- GDC | clinical__primary | |
| TCGA-NF-A4X2 | (TODO) -- GDC | clinical__primary | |
| TCGA-NF-A5CP | (TODO) -- GDC | clinical__primary | |
| TCGA-NG-A4VU | (TODO) -- GDC | clinical__primary | |
| TCGA-NG-A4VW | (TODO) -- GDC | clinical__primary | |
| TCGA-QM-A5NM | (TODO) -- GDC | clinical__primary | |
| TCGA-QN-A5NN | (TODO) -- GDC | clinical__primary |
TCGA-UCS Blood Derived Normal CN Data
Table S3.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-N5-A4R8-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N5-A4R8-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RA-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N5-A4RA-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RD-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N5-A4RD-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RF-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N5-A4RF-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RJ-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N5-A4RJ-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RM-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N5-A4RM-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RN-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N5-A4RN-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RO-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N5-A4RO-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RT-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N5-A4RT-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RU-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N5-A4RU-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RV-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N5-A4RV-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A59E-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N5-A59E-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A59F-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N5-A59F-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N6-A4V9-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N6-A4V9-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N6-A4VG-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N6-A4VG-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N7-A4Y0-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N7-A4Y0-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N7-A4Y5-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N7-A4Y5-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N7-A4Y8-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N7-A4Y8-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N7-A59B-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N7-A59B-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N8-A4PI-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N8-A4PI-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N8-A4PL-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N8-A4PL-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N8-A4PM-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N8-A4PM-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N8-A4PN-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N8-A4PN-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N8-A4PO-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N8-A4PO-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N8-A4PP-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N8-A4PP-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N8-A4PQ-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N8-A4PQ-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N8-A56S-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N8-A56S-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N9-A4Q1-10B-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N9-A4Q1-10B-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N9-A4Q3-10B-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N9-A4Q3-10B-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N9-A4Q4-10B-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N9-A4Q4-10B-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N9-A4Q7-10B-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N9-A4Q7-10B-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NA-A4QV-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-NA-A4QV-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NA-A4QW-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-NA-A4QW-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NA-A4QX-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-NA-A4QX-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NA-A4QY-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-NA-A4QY-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NA-A4R0-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-NA-A4R0-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NA-A4R1-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-NA-A4R1-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NA-A5I1-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-NA-A5I1-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-ND-A4WA-10B-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-ND-A4WA-10B-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-ND-A4WC-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-ND-A4WC-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-ND-A4WF-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-ND-A4WF-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NF-A4WU-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-NF-A4WU-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NF-A4X2-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-NF-A4X2-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NF-A5CP-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-NF-A5CP-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NG-A4VU-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-NG-A4VU-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NG-A4VW-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-NG-A4VW-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-QM-A5NM-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-QM-A5NM-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-QN-A5NN-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-QN-A5NN-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
TCGA-UCS Solid Tissue Normal BCR Data
Table S4.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-N6-A4VC | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N6-A4VD | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N6-A4VE | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N6-A4VF | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N9-A4PZ | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N9-A4Q8 | (TODO) -- GDC | clinical__biospecimen |
TCGA-UCS Solid Tissue Normal Clinical Data
Table S5.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-N6-A4VC | (TODO) -- GDC | clinical__primary | |
| TCGA-N6-A4VD | (TODO) -- GDC | clinical__primary | |
| TCGA-N6-A4VE | (TODO) -- GDC | clinical__primary | |
| TCGA-N6-A4VF | (TODO) -- GDC | clinical__primary | |
| TCGA-N9-A4PZ | (TODO) -- GDC | clinical__primary | |
| TCGA-N9-A4Q8 | (TODO) -- GDC | clinical__primary |
TCGA-UCS Solid Tissue Normal CN Data
Table S6.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-N6-A4VC-11A-11D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N6-A4VC-11A-11D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N6-A4VD-11A-11D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N6-A4VD-11A-11D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N6-A4VE-11A-12D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N6-A4VE-11A-12D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N6-A4VF-11A-11D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N6-A4VF-11A-11D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N9-A4PZ-11A-11D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N9-A4PZ-11A-11D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N9-A4Q8-11A-11D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N9-A4Q8-11A-11D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
TCGA-UCS Primary Tumor BCR Data
Table S7.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-N5-A4R8 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RA | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RD | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RF | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RJ | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RM | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RN | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RO | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RS | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RT | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RU | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RV | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A59E | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A59F | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N6-A4V9 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N6-A4VC | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N6-A4VD | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N6-A4VE | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N6-A4VF | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N6-A4VG | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N7-A4Y0 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N7-A4Y5 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N7-A4Y8 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N7-A59B | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N8-A4PI | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N8-A4PL | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N8-A4PM | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N8-A4PN | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N8-A4PO | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N8-A4PP | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N8-A4PQ | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N8-A56S | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N9-A4PZ | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N9-A4Q1 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N9-A4Q3 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N9-A4Q4 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N9-A4Q7 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N9-A4Q8 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NA-A4QV | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NA-A4QW | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NA-A4QX | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NA-A4QY | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NA-A4R0 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NA-A4R1 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NA-A5I1 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-ND-A4W6 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-ND-A4WA | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-ND-A4WC | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-ND-A4WF | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NF-A4WU | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NF-A4WX | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NF-A4X2 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NF-A5CP | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NG-A4VU | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NG-A4VW | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-QM-A5NM | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-QN-A5NN | (TODO) -- GDC | clinical__biospecimen |
TCGA-UCS Primary Tumor Clinical Data
Table S8.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-N5-A4R8 | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RA | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RD | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RF | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RJ | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RM | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RN | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RO | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RS | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RT | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RU | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RV | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A59E | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A59F | (TODO) -- GDC | clinical__primary | |
| TCGA-N6-A4V9 | (TODO) -- GDC | clinical__primary | |
| TCGA-N6-A4VC | (TODO) -- GDC | clinical__primary | |
| TCGA-N6-A4VD | (TODO) -- GDC | clinical__primary | |
| TCGA-N6-A4VE | (TODO) -- GDC | clinical__primary | |
| TCGA-N6-A4VF | (TODO) -- GDC | clinical__primary | |
| TCGA-N6-A4VG | (TODO) -- GDC | clinical__primary | |
| TCGA-N7-A4Y0 | (TODO) -- GDC | clinical__primary | |
| TCGA-N7-A4Y5 | (TODO) -- GDC | clinical__primary | |
| TCGA-N7-A4Y8 | (TODO) -- GDC | clinical__primary | |
| TCGA-N7-A59B | (TODO) -- GDC | clinical__primary | |
| TCGA-N8-A4PI | (TODO) -- GDC | clinical__primary | |
| TCGA-N8-A4PL | (TODO) -- GDC | clinical__primary | |
| TCGA-N8-A4PM | (TODO) -- GDC | clinical__primary | |
| TCGA-N8-A4PN | (TODO) -- GDC | clinical__primary | |
| TCGA-N8-A4PO | (TODO) -- GDC | clinical__primary | |
| TCGA-N8-A4PP | (TODO) -- GDC | clinical__primary | |
| TCGA-N8-A4PQ | (TODO) -- GDC | clinical__primary | |
| TCGA-N8-A56S | (TODO) -- GDC | clinical__primary | |
| TCGA-N9-A4PZ | (TODO) -- GDC | clinical__primary | |
| TCGA-N9-A4Q1 | (TODO) -- GDC | clinical__primary | |
| TCGA-N9-A4Q3 | (TODO) -- GDC | clinical__primary | |
| TCGA-N9-A4Q4 | (TODO) -- GDC | clinical__primary | |
| TCGA-N9-A4Q7 | (TODO) -- GDC | clinical__primary | |
| TCGA-N9-A4Q8 | (TODO) -- GDC | clinical__primary | |
| TCGA-NA-A4QV | (TODO) -- GDC | clinical__primary | |
| TCGA-NA-A4QW | (TODO) -- GDC | clinical__primary | |
| TCGA-NA-A4QX | (TODO) -- GDC | clinical__primary | |
| TCGA-NA-A4QY | (TODO) -- GDC | clinical__primary | |
| TCGA-NA-A4R0 | (TODO) -- GDC | clinical__primary | |
| TCGA-NA-A4R1 | (TODO) -- GDC | clinical__primary | |
| TCGA-NA-A5I1 | (TODO) -- GDC | clinical__primary | |
| TCGA-ND-A4W6 | (TODO) -- GDC | clinical__primary | |
| TCGA-ND-A4WA | (TODO) -- GDC | clinical__primary | |
| TCGA-ND-A4WC | (TODO) -- GDC | clinical__primary | |
| TCGA-ND-A4WF | (TODO) -- GDC | clinical__primary | |
| TCGA-NF-A4WU | (TODO) -- GDC | clinical__primary | |
| TCGA-NF-A4WX | (TODO) -- GDC | clinical__primary | |
| TCGA-NF-A4X2 | (TODO) -- GDC | clinical__primary | |
| TCGA-NF-A5CP | (TODO) -- GDC | clinical__primary | |
| TCGA-NG-A4VU | (TODO) -- GDC | clinical__primary | |
| TCGA-NG-A4VW | (TODO) -- GDC | clinical__primary | |
| TCGA-QM-A5NM | (TODO) -- GDC | clinical__primary | |
| TCGA-QN-A5NN | (TODO) -- GDC | clinical__primary |
TCGA-UCS Primary Tumor CN Data
Table S9.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-N5-A4RA-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N5-A4RA-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RD-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N5-A4RD-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RF-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N5-A4RF-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RJ-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N5-A4RJ-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RM-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N5-A4RM-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RN-01A-12D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N5-A4RN-01A-12D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RO-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N5-A4RO-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RS-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N5-A4RS-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RT-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N5-A4RT-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RU-01A-31D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N5-A4RU-01A-31D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RV-01A-21D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N5-A4RV-01A-21D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A59E-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N5-A59E-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A59F-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N5-A59F-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N6-A4V9-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N6-A4V9-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N6-A4VC-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N6-A4VC-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N6-A4VD-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N6-A4VD-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N6-A4VE-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N6-A4VE-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N6-A4VF-01A-31D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N6-A4VF-01A-31D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N6-A4VG-01A-31D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N6-A4VG-01A-31D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N7-A4Y0-01A-12D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N7-A4Y0-01A-12D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N7-A4Y5-01A-12D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N7-A4Y5-01A-12D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N7-A4Y8-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N7-A4Y8-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N7-A59B-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N7-A59B-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N8-A4PI-01A-21D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N8-A4PI-01A-21D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N8-A4PL-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N8-A4PL-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N8-A4PM-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N8-A4PM-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N8-A4PN-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N8-A4PN-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N8-A4PO-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N8-A4PO-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N8-A4PP-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N8-A4PP-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N8-A4PQ-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N8-A4PQ-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N8-A56S-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N8-A56S-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N9-A4PZ-01A-22D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N9-A4PZ-01A-22D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N9-A4Q1-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N9-A4Q1-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N9-A4Q3-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N9-A4Q3-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N9-A4Q4-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N9-A4Q4-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N9-A4Q7-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N9-A4Q7-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N9-A4Q8-01A-31D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-N9-A4Q8-01A-31D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NA-A4QV-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-NA-A4QV-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NA-A4QW-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-NA-A4QW-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NA-A4QX-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-NA-A4QX-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NA-A4QY-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-NA-A4QY-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NA-A4R0-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-NA-A4R0-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NA-A4R1-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-NA-A4R1-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NA-A5I1-01A-21D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-NA-A5I1-01A-21D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-ND-A4W6-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-ND-A4W6-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-ND-A4WA-01A-12D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-ND-A4WA-01A-12D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-ND-A4WC-01A-21D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-ND-A4WC-01A-21D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-ND-A4WF-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-ND-A4WF-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NF-A4WU-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-NF-A4WU-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NF-A4WX-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-NF-A4WX-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NF-A4X2-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-NF-A4X2-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NF-A5CP-01A-12D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-NF-A5CP-01A-12D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NG-A4VU-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-NG-A4VU-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NG-A4VW-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-NG-A4VW-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-QM-A5NM-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-QM-A5NM-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-QN-A5NN-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV_no_germline__snp6 |
| TCGA-QN-A5NN-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
TCGA-UCS Primary Tumor mRNA Data
Table S10.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-N5-A4R8-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N5-A4R8-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N5-A4R8-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N5-A4RA-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N5-A4RA-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N5-A4RA-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N5-A4RD-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N5-A4RD-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N5-A4RD-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N5-A4RF-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N5-A4RF-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N5-A4RF-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N5-A4RJ-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N5-A4RJ-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N5-A4RJ-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N5-A4RM-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N5-A4RM-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N5-A4RM-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N5-A4RN-01A-12R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N5-A4RN-01A-12R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N5-A4RN-01A-12R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N5-A4RO-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N5-A4RO-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N5-A4RO-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N5-A4RS-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N5-A4RS-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N5-A4RS-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N5-A4RT-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N5-A4RT-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N5-A4RT-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N5-A4RU-01A-31R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N5-A4RU-01A-31R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N5-A4RU-01A-31R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N5-A4RV-01A-21R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N5-A4RV-01A-21R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N5-A4RV-01A-21R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N5-A59E-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N5-A59E-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N5-A59E-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N5-A59F-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N5-A59F-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N5-A59F-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N6-A4V9-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N6-A4V9-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N6-A4V9-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N6-A4VC-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N6-A4VC-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N6-A4VC-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N6-A4VD-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N6-A4VD-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N6-A4VD-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N6-A4VE-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N6-A4VE-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N6-A4VE-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N6-A4VF-01A-31R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N6-A4VF-01A-31R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N6-A4VF-01A-31R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N6-A4VG-01A-31R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N6-A4VG-01A-31R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N6-A4VG-01A-31R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N7-A4Y0-01A-12R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N7-A4Y0-01A-12R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N7-A4Y0-01A-12R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N7-A4Y5-01A-12R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N7-A4Y5-01A-12R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N7-A4Y5-01A-12R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N7-A4Y8-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N7-A4Y8-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N7-A4Y8-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N7-A59B-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N7-A59B-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N7-A59B-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N8-A4PI-01A-21R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N8-A4PI-01A-21R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N8-A4PI-01A-21R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N8-A4PL-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N8-A4PL-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N8-A4PL-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N8-A4PM-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N8-A4PM-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N8-A4PM-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N8-A4PN-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N8-A4PN-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N8-A4PN-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N8-A4PO-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N8-A4PO-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N8-A4PO-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N8-A4PP-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N8-A4PP-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N8-A4PP-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N8-A4PQ-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N8-A4PQ-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N8-A4PQ-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N8-A56S-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N8-A56S-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N8-A56S-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N9-A4PZ-01A-22R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N9-A4PZ-01A-22R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N9-A4PZ-01A-22R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N9-A4Q1-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N9-A4Q1-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N9-A4Q1-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N9-A4Q3-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N9-A4Q3-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N9-A4Q3-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N9-A4Q4-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N9-A4Q4-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N9-A4Q4-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N9-A4Q7-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N9-A4Q7-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N9-A4Q7-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-NA-A4QV-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-NA-A4QV-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-NA-A4QV-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-NA-A4QW-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-NA-A4QW-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-NA-A4QW-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-NA-A4QX-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-NA-A4QX-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-NA-A4QX-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-NA-A4QY-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-NA-A4QY-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-NA-A4QY-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-NA-A4R0-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-NA-A4R0-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-NA-A4R0-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-NA-A4R1-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-NA-A4R1-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-NA-A4R1-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-NA-A5I1-01A-21R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-NA-A5I1-01A-21R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-NA-A5I1-01A-21R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-ND-A4W6-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-ND-A4W6-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-ND-A4W6-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-ND-A4WA-01A-12R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-ND-A4WA-01A-12R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-ND-A4WA-01A-12R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-ND-A4WC-01A-21R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-ND-A4WC-01A-21R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-ND-A4WC-01A-21R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-ND-A4WF-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-ND-A4WF-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-ND-A4WF-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-NF-A4WU-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-NF-A4WU-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-NF-A4WU-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-NF-A4WX-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-NF-A4WX-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-NF-A4WX-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-NF-A4X2-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-NF-A4X2-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-NF-A4X2-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-NF-A5CP-01A-12R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-NF-A5CP-01A-12R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-NF-A5CP-01A-12R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-NG-A4VU-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-NG-A4VU-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-NG-A4VU-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-NG-A4VW-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-NG-A4VW-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-NG-A4VW-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-QM-A5NM-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-QM-A5NM-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-QM-A5NM-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-QN-A5NN-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-QN-A5NN-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-QN-A5NN-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM |
TCGA-UCS Primary Tumor miR Data
Table S11.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-N5-A4R8-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N5-A4R8-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N5-A4RA-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N5-A4RA-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N5-A4RD-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N5-A4RD-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N5-A4RF-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N5-A4RF-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N5-A4RJ-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N5-A4RJ-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N5-A4RM-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N5-A4RM-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N5-A4RN-01A-12R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N5-A4RN-01A-12R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N5-A4RO-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N5-A4RO-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N5-A4RS-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N5-A4RS-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N5-A4RT-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N5-A4RT-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N5-A4RU-01A-31R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N5-A4RU-01A-31R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N5-A4RV-01A-21R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N5-A4RV-01A-21R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N5-A59E-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N5-A59E-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N5-A59F-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N5-A59F-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N6-A4V9-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N6-A4V9-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N6-A4VC-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N6-A4VC-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N6-A4VD-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N6-A4VD-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N6-A4VE-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N6-A4VE-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N6-A4VF-01A-31R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N6-A4VF-01A-31R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N6-A4VG-01A-31R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N6-A4VG-01A-31R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N7-A4Y0-01A-12R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N7-A4Y0-01A-12R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N7-A4Y5-01A-12R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N7-A4Y5-01A-12R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N7-A4Y8-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N7-A4Y8-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N7-A59B-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N7-A59B-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N8-A4PI-01A-21R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N8-A4PI-01A-21R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N8-A4PL-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N8-A4PL-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N8-A4PM-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N8-A4PM-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N8-A4PN-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N8-A4PN-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N8-A4PO-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N8-A4PO-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N8-A4PP-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N8-A4PP-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N8-A4PQ-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N8-A4PQ-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N8-A56S-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N8-A56S-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N9-A4PZ-01A-22R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N9-A4PZ-01A-22R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N9-A4Q1-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N9-A4Q1-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N9-A4Q3-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N9-A4Q3-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N9-A4Q4-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N9-A4Q4-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N9-A4Q7-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N9-A4Q7-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N9-A4Q8-01A-31R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N9-A4Q8-01A-31R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-NA-A4QV-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-NA-A4QV-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-NA-A4QW-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-NA-A4QW-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-NA-A4QX-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-NA-A4QX-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-NA-A4QY-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-NA-A4QY-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-NA-A4R0-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-NA-A4R0-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-NA-A4R1-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-NA-A4R1-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-NA-A5I1-01A-21R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-NA-A5I1-01A-21R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-ND-A4W6-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-ND-A4W6-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-ND-A4WA-01A-12R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-ND-A4WA-01A-12R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-ND-A4WC-01A-21R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-ND-A4WC-01A-21R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-ND-A4WF-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-ND-A4WF-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-NF-A4WU-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-NF-A4WU-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-NF-A4WX-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-NF-A4WX-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-NF-A4X2-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-NF-A4X2-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-NF-A5CP-01A-12R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-NF-A5CP-01A-12R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-NG-A4VU-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-NG-A4VU-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-NG-A4VW-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-NG-A4VW-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-QM-A5NM-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-QM-A5NM-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-QN-A5NN-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-QN-A5NN-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp |
TCGA-UCS Primary Tumor MAF Data
Table S12.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-N5-A4R8-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N5-A4RA-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N5-A4RD-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N5-A4RF-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N5-A4RJ-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N5-A4RM-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N5-A4RN-01A-12D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N5-A4RO-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N5-A4RS-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N5-A4RT-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N5-A4RU-01A-31D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N5-A4RV-01A-21D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N5-A59E-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N5-A59F-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N6-A4V9-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N6-A4VC-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N6-A4VD-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N6-A4VE-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N6-A4VF-01A-31D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N6-A4VG-01A-31D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N7-A4Y0-01A-12D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N7-A4Y5-01A-12D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N7-A4Y8-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N7-A59B-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N8-A4PI-01A-21D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N8-A4PL-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N8-A4PM-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N8-A4PN-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N8-A4PO-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N8-A4PP-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N8-A4PQ-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N8-A56S-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N9-A4PZ-01A-22D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N9-A4Q1-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N9-A4Q3-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N9-A4Q4-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N9-A4Q7-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N9-A4Q8-01A-31D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-NA-A4QV-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-NA-A4QW-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-NA-A4QX-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-NA-A4QY-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-NA-A4R0-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-NA-A4R1-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-NA-A5I1-01A-21D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-ND-A4W6-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-ND-A4WA-01A-12D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-ND-A4WC-01A-21D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-ND-A4WF-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-NF-A4WU-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-NF-A4WX-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-NF-A4X2-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-NF-A5CP-01A-12D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-NG-A4VU-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-NG-A4VW-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-QM-A5NM-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-QN-A5NN-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect |
The sample type short letter codes in the table above are defined in the following list.
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TP: Primary Tumor
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TR: Recurrent Tumor
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TB: Primary Blood Derived Cancer - Peripheral Blood
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TRBM: Recurrent Blood Derived Cancer - Bone Marrow
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TAP: Additional - New Primary
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TM: Metastatic
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TAM: Additional Metastatic
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THOC: Human Tumor Original Cells
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TBM: Primary Blood Derived Cancer - Bone Marrow
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NB: Blood Derived Normal
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NT: Solid Tissue Normal
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NBC: Buccal Cell Normal
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NEBV: EBV Immortalized Normal
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NBM: Bone Marrow Normal
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CELLC: Control Analyte
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TRB: Recurrent Blood Derived Cancer - Peripheral Blood
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CELL: Cell Lines
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XP: Primary Xenograft Tissue
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XCL: Cell Line Derived Xenograft Tissue
Figure 1. Get High-res Image This figure depicts the distribution of available data on a per participant basis.
Results
Filtered Samples
Methods & Data