stddata__2016_11_03 Samples Report
- Overview
+ Introduction
- Summary

There were 0 redactions, 1139 replicate aliquots, 0 blacklisted aliquots, and 0 FFPE aliquots. The table below represents the sample counts for those samples that were ingested into firehose after filtering out redactions, replicates, and blacklisted data, and segregating FFPEs.

Table 1.  Get Full Table Summary of TCGA Tumor Data. Click on a tumor type to display a tumor type specific Samples Report.

Cohort BCR CN Clinical MAF Methylation mRNA miR
ACC 92 90 92 92 80 79 80
BLCA 412 412 412 412 412 408 409
BRCA 1098 1094 1097 1044 1095 1085 1078
CESC 308 295 307 305 307 304 307
CHOL 51 36 45 51 36 36 36
COAD 463 450 459 432 459 456 444
COADREAD 635 614 629 589 624 622 605
DLBC 58 48 48 48 48 48 47
ESCA 185 184 185 184 185 161 184
GBM 617 590 596 396 422 154 0
GBMLGG 1133 1104 1111 909 938 665 512
HNSC 528 517 528 510 528 500 523
KICH 113 66 113 66 66 65 66
KIPAN 941 886 941 693 890 883 873
KIRC 537 530 537 339 533 530 516
KIRP 291 290 291 288 291 288 291
LAML 200 143 200 149 140 151 103
LGG 516 514 515 513 516 511 512
LIHC 377 375 377 375 377 371 372
LUAD 585 518 522 569 578 513 513
LUSC 504 503 504 497 503 501 478
MESO 87 87 87 83 87 86 87
OV 608 568 587 441 592 374 489
PAAD 185 184 185 183 184 177 178
PANGI 1298 1240 1257 1214 1287 1158 1225
PCPG 179 178 179 179 179 178 179
PRAD 500 495 500 498 498 495 494
READ 172 164 170 157 165 166 161
SARC 261 260 261 255 261 259 259
SKCM 470 368 470 368 368 367 352
STAD 478 442 443 441 478 375 436
STES 663 626 628 625 663 536 620
TGCT 150 134 134 150 150 150 150
THCA 507 505 507 496 507 502 506
THYM 124 124 124 123 124 119 124
UCEC 560 540 548 542 547 543 538
UCS 57 56 57 57 57 56 57
UVM 80 80 80 80 80 80 80
Totals 11353 10840 11160 10323 10853 10088 10049
- Results
+ Sample Heatmaps
+ Filtered Samples
+ FFPE Cases
+ [NOT YET IMPLEMENTED] Additional Annotations from the DCC's Annotations Manager
+ Methods & Data
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