TCGA-CHOL Samples Report
2016_11_03 Data Snapshot
Overview
Introduction
The Broad GDAC mirrors data from the DCC on a daily basis. Although all data is mirrored, not every sample is ingested into Firehose. There are three main mechanisms that filter samples to ensure that only the most scientifically relevant samples make it into our standard data and analyses runs. These three mechanisms are redactions, replicate filtering, and blacklisting. This report summarizes the data that is ingested into Firehose, describes the three filtering mechanisms, lists those samples that are removed, and gives all available annotations from the DCC's Annotation Manager.
Summary
There were 0 redactions, 0 replicate aliquots, 0 blacklisted aliquots, and 0 FFPE aliquots. The table below represents the sample counts for those samples that were ingested into firehose after filtering out redactions, replicates, and blacklisted data, and segregating FFPEs.
Table 1. This table provides a breakdown of sample counts on a per sample type and, if applicable, per subtype basis. Each count is a link to a table containing a list of the samples that comprise that count and details pertaining to each individual sample (e.g. platform, sequencing center, etc.). Please note, there are usually multiple protocols per data type, so there are typically many more rows than the count implies.
| Sample.Type | BCR | Clinical | CN | mRNA | miR | MAF | Methylation |
|---|---|---|---|---|---|---|---|
| NB | 34 | 34 | 34 | 0 | 0 | 0 | 0 |
| NT | 15 | 15 | 15 | 9 | 9 | 0 | 9 |
| TP | 51 | 45 | 36 | 36 | 36 | 51 | 36 |
| Totals | 51 | 45 | 36 | 36 | 36 | 51 | 36 |
TCGA-CHOL Blood Derived Normal BCR Data
Table S1.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-3X-AAV9 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-3X-AAVA | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-3X-AAVB | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-3X-AAVC | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-3X-AAVE | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-4G-AAZT | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA2G | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA2H | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA2I | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA2O | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA2Q | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA2R | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA2T | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA2U | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA2W | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA2X | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA30 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA31 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA33 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA34 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA36 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA38 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA39 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W6-AA0S | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-WD-A7RX | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-YR-A95A | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-ZD-A8I3 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-ZH-A8Y1 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-ZH-A8Y2 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-ZH-A8Y4 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-ZH-A8Y5 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-ZH-A8Y6 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-ZH-A8Y8 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-ZU-A8S4 | (TODO) -- GDC | clinical__biospecimen |
TCGA-CHOL Blood Derived Normal Clinical Data
Table S2.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-3X-AAV9 | (TODO) -- GDC | clinical__primary | |
| TCGA-3X-AAVA | (TODO) -- GDC | clinical__primary | |
| TCGA-3X-AAVB | (TODO) -- GDC | clinical__primary | |
| TCGA-3X-AAVC | (TODO) -- GDC | clinical__primary | |
| TCGA-3X-AAVE | (TODO) -- GDC | clinical__primary | |
| TCGA-4G-AAZT | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA2G | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA2H | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA2I | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA2O | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA2Q | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA2R | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA2T | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA2U | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA2W | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA2X | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA30 | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA31 | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA33 | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA34 | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA36 | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA38 | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA39 | (TODO) -- GDC | clinical__primary | |
| TCGA-W6-AA0S | (TODO) -- GDC | clinical__primary | |
| TCGA-WD-A7RX | (TODO) -- GDC | clinical__primary | |
| TCGA-YR-A95A | (TODO) -- GDC | clinical__primary | |
| TCGA-ZD-A8I3 | (TODO) -- GDC | clinical__primary | |
| TCGA-ZH-A8Y1 | (TODO) -- GDC | clinical__primary | |
| TCGA-ZH-A8Y2 | (TODO) -- GDC | clinical__primary | |
| TCGA-ZH-A8Y4 | (TODO) -- GDC | clinical__primary | |
| TCGA-ZH-A8Y5 | (TODO) -- GDC | clinical__primary | |
| TCGA-ZH-A8Y6 | (TODO) -- GDC | clinical__primary | |
| TCGA-ZH-A8Y8 | (TODO) -- GDC | clinical__primary | |
| TCGA-ZU-A8S4 | (TODO) -- GDC | clinical__primary |
TCGA-CHOL Blood Derived Normal CN Data
Table S3.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-3X-AAV9-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-3X-AAV9-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-3X-AAVA-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-3X-AAVA-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-3X-AAVB-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-3X-AAVB-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-3X-AAVC-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-3X-AAVC-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-3X-AAVE-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-3X-AAVE-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-4G-AAZT-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-4G-AAZT-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA2G-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA2G-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA2H-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA2H-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA2I-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA2I-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA2O-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA2O-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA2Q-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA2Q-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA2R-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA2R-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA2T-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA2T-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA2U-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA2U-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA2W-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA2W-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA2X-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA2X-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA30-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA30-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA31-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA31-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA33-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA33-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA34-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA34-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA36-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA36-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA38-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA38-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA39-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA39-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W6-AA0S-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W6-AA0S-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-WD-A7RX-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-WD-A7RX-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-YR-A95A-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-YR-A95A-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-ZD-A8I3-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-ZD-A8I3-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-ZH-A8Y1-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-ZH-A8Y1-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-ZH-A8Y2-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-ZH-A8Y2-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-ZH-A8Y4-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-ZH-A8Y4-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-ZH-A8Y5-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-ZH-A8Y5-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-ZH-A8Y6-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-ZH-A8Y6-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-ZH-A8Y8-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-ZH-A8Y8-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-ZU-A8S4-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-ZU-A8S4-10A-01D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
TCGA-CHOL Solid Tissue Normal BCR Data
Table S4.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-4G-AAZO | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-4G-AAZT | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA2I | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA2O | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA2Q | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA2R | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA2T | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA2U | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA2X | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA2Z | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA30 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA31 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA33 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA34 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-ZU-A8S4 | (TODO) -- GDC | clinical__biospecimen |
TCGA-CHOL Solid Tissue Normal Clinical Data
Table S5.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-4G-AAZO | (TODO) -- GDC | clinical__primary | |
| TCGA-4G-AAZT | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA2I | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA2O | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA2Q | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA2R | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA2T | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA2U | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA2X | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA2Z | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA30 | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA31 | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA33 | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA34 | (TODO) -- GDC | clinical__primary | |
| TCGA-ZU-A8S4 | (TODO) -- GDC | clinical__primary |
TCGA-CHOL Solid Tissue Normal CN Data
Table S6.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-4G-AAZO-11A-11D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-4G-AAZO-11A-11D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-4G-AAZT-11A-11D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-4G-AAZT-11A-11D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA2I-11A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA2I-11A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA2O-11A-11D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA2O-11A-11D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA2Q-11A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA2Q-11A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA2R-11A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA2R-11A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA2T-11A-11D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA2T-11A-11D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA2U-11A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA2U-11A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA2X-11A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA2X-11A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA2Z-11A-11D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA2Z-11A-11D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA30-11A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA30-11A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA31-11A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA31-11A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA33-11A-11D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA33-11A-11D-A419-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA34-11A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA34-11A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-ZU-A8S4-11A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-ZU-A8S4-11A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
TCGA-CHOL Solid Tissue Normal mRNA Data
Table S7.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-W5-AA2I-11A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-W5-AA2I-11A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-W5-AA2I-11A-11R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-W5-AA2Q-11A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-W5-AA2Q-11A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-W5-AA2Q-11A-11R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-W5-AA2R-11A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-W5-AA2R-11A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-W5-AA2R-11A-11R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-W5-AA2U-11A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-W5-AA2U-11A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-W5-AA2U-11A-11R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-W5-AA2X-11A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-W5-AA2X-11A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-W5-AA2X-11A-11R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-W5-AA30-11A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-W5-AA30-11A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-W5-AA30-11A-11R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-W5-AA31-11A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-W5-AA31-11A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-W5-AA31-11A-11R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-W5-AA34-11A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-W5-AA34-11A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-W5-AA34-11A-11R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-ZU-A8S4-11A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-ZU-A8S4-11A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-ZU-A8S4-11A-11R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM |
TCGA-CHOL Solid Tissue Normal miR Data
Table S8.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-W5-AA2I-11A-11R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-W5-AA2I-11A-11R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-W5-AA2Q-11A-11R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-W5-AA2Q-11A-11R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-W5-AA2R-11A-11R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-W5-AA2R-11A-11R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-W5-AA2U-11A-11R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-W5-AA2U-11A-11R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-W5-AA2X-11A-11R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-W5-AA2X-11A-11R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-W5-AA30-11A-11R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-W5-AA30-11A-11R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-W5-AA31-11A-11R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-W5-AA31-11A-11R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-W5-AA34-11A-11R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-W5-AA34-11A-11R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-ZU-A8S4-11A-11R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-ZU-A8S4-11A-11R-A41D-13 | (TODO) -- GDC | miR__isoformExp |
TCGA-CHOL Solid Tissue Normal Methylation Data
Table S9.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-W5-AA2I-11A-11D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-W5-AA2Q-11A-11D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-W5-AA2R-11A-11D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-W5-AA2U-11A-11D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-W5-AA2X-11A-11D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-W5-AA30-11A-11D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-W5-AA31-11A-11D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-W5-AA34-11A-11D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-ZU-A8S4-11A-11D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
TCGA-CHOL Primary Tumor BCR Data
Table S10.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-3X-AAV9 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-3X-AAVA | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-3X-AAVB | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-3X-AAVC | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-3X-AAVE | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-4G-AAZF | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-4G-AAZG | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-4G-AAZO | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-4G-AAZR | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-4G-AAZT | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-5A-A8ZF | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-5A-A8ZG | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA2G | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA2H | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA2I | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA2J | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA2K | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA2M | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA2O | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA2Q | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA2R | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA2T | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA2U | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA2W | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA2X | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA2Z | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA30 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA31 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA33 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA34 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA36 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA38 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W5-AA39 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W6-AA0S | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W6-AA0T | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W7-A93N | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W7-A93O | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-W7-A93P | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-WD-A7RX | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-YR-A95A | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-ZD-A8I3 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-ZH-A8Y1 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-ZH-A8Y2 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-ZH-A8Y3 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-ZH-A8Y4 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-ZH-A8Y5 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-ZH-A8Y6 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-ZH-A8Y7 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-ZH-A8Y8 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-ZK-AAYZ | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-ZU-A8S4 | (TODO) -- GDC | clinical__biospecimen |
TCGA-CHOL Primary Tumor Clinical Data
Table S11.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-3X-AAV9 | (TODO) -- GDC | clinical__primary | |
| TCGA-3X-AAVA | (TODO) -- GDC | clinical__primary | |
| TCGA-3X-AAVB | (TODO) -- GDC | clinical__primary | |
| TCGA-3X-AAVC | (TODO) -- GDC | clinical__primary | |
| TCGA-3X-AAVE | (TODO) -- GDC | clinical__primary | |
| TCGA-4G-AAZF | (TODO) -- GDC | clinical__primary | |
| TCGA-4G-AAZG | (TODO) -- GDC | clinical__primary | |
| TCGA-4G-AAZO | (TODO) -- GDC | clinical__primary | |
| TCGA-4G-AAZR | (TODO) -- GDC | clinical__primary | |
| TCGA-4G-AAZT | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA2G | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA2H | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA2I | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA2J | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA2K | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA2M | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA2O | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA2Q | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA2R | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA2T | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA2U | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA2W | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA2X | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA2Z | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA30 | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA31 | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA33 | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA34 | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA36 | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA38 | (TODO) -- GDC | clinical__primary | |
| TCGA-W5-AA39 | (TODO) -- GDC | clinical__primary | |
| TCGA-W6-AA0S | (TODO) -- GDC | clinical__primary | |
| TCGA-W6-AA0T | (TODO) -- GDC | clinical__primary | |
| TCGA-WD-A7RX | (TODO) -- GDC | clinical__primary | |
| TCGA-YR-A95A | (TODO) -- GDC | clinical__primary | |
| TCGA-ZD-A8I3 | (TODO) -- GDC | clinical__primary | |
| TCGA-ZH-A8Y1 | (TODO) -- GDC | clinical__primary | |
| TCGA-ZH-A8Y2 | (TODO) -- GDC | clinical__primary | |
| TCGA-ZH-A8Y3 | (TODO) -- GDC | clinical__primary | |
| TCGA-ZH-A8Y4 | (TODO) -- GDC | clinical__primary | |
| TCGA-ZH-A8Y5 | (TODO) -- GDC | clinical__primary | |
| TCGA-ZH-A8Y6 | (TODO) -- GDC | clinical__primary | |
| TCGA-ZH-A8Y7 | (TODO) -- GDC | clinical__primary | |
| TCGA-ZH-A8Y8 | (TODO) -- GDC | clinical__primary | |
| TCGA-ZU-A8S4 | (TODO) -- GDC | clinical__primary |
TCGA-CHOL Primary Tumor CN Data
Table S12.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-3X-AAV9-01A-72D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-3X-AAV9-01A-72D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-3X-AAVA-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-3X-AAVA-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-3X-AAVB-01A-31D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-3X-AAVB-01A-31D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-3X-AAVC-01A-21D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-3X-AAVC-01A-21D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-3X-AAVE-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-3X-AAVE-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-4G-AAZO-01A-12D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-4G-AAZO-01A-12D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-4G-AAZT-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-4G-AAZT-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA2G-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA2G-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA2H-01A-31D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA2H-01A-31D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA2I-01A-32D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA2I-01A-32D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA2O-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA2O-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA2Q-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA2Q-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA2R-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA2R-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA2T-01A-12D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA2T-01A-12D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA2U-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA2U-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA2W-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA2W-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA2X-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA2X-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA2Z-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA2Z-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA30-01A-31D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA30-01A-31D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA31-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA31-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA33-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA33-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA34-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA34-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA36-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA36-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA38-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA38-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W5-AA39-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W5-AA39-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-W6-AA0S-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-W6-AA0S-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-WD-A7RX-01A-12D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-WD-A7RX-01A-12D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-YR-A95A-01A-12D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-YR-A95A-01A-12D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-ZD-A8I3-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-ZD-A8I3-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-ZH-A8Y1-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-ZH-A8Y1-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-ZH-A8Y2-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-ZH-A8Y2-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-ZH-A8Y4-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-ZH-A8Y4-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-ZH-A8Y5-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-ZH-A8Y5-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-ZH-A8Y6-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-ZH-A8Y6-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-ZH-A8Y8-01A-51D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-ZH-A8Y8-01A-51D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-ZU-A8S4-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-ZU-A8S4-01A-11D-A416-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
TCGA-CHOL Primary Tumor mRNA Data
Table S13.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-3X-AAV9-01A-72R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-3X-AAV9-01A-72R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-3X-AAV9-01A-72R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-3X-AAVA-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-3X-AAVA-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-3X-AAVA-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-3X-AAVB-01A-31R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-3X-AAVB-01A-31R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-3X-AAVB-01A-31R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-3X-AAVC-01A-21R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-3X-AAVC-01A-21R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-3X-AAVC-01A-21R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-3X-AAVE-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-3X-AAVE-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-3X-AAVE-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-4G-AAZO-01A-12R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-4G-AAZO-01A-12R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-4G-AAZO-01A-12R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-4G-AAZT-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-4G-AAZT-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-4G-AAZT-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-W5-AA2G-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-W5-AA2G-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-W5-AA2G-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-W5-AA2H-01A-31R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-W5-AA2H-01A-31R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-W5-AA2H-01A-31R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-W5-AA2I-01A-32R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-W5-AA2I-01A-32R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-W5-AA2I-01A-32R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-W5-AA2O-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-W5-AA2O-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-W5-AA2O-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-W5-AA2Q-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-W5-AA2Q-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-W5-AA2Q-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-W5-AA2R-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-W5-AA2R-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-W5-AA2R-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-W5-AA2T-01A-12R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-W5-AA2T-01A-12R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-W5-AA2T-01A-12R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-W5-AA2U-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-W5-AA2U-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-W5-AA2U-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-W5-AA2W-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-W5-AA2W-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-W5-AA2W-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-W5-AA2X-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-W5-AA2X-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-W5-AA2X-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-W5-AA2Z-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-W5-AA2Z-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-W5-AA2Z-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-W5-AA30-01A-31R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-W5-AA30-01A-31R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-W5-AA30-01A-31R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-W5-AA31-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-W5-AA31-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-W5-AA31-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-W5-AA33-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-W5-AA33-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-W5-AA33-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-W5-AA34-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-W5-AA34-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-W5-AA34-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-W5-AA36-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-W5-AA36-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-W5-AA36-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-W5-AA38-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-W5-AA38-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-W5-AA38-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-W5-AA39-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-W5-AA39-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-W5-AA39-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-W6-AA0S-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-W6-AA0S-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-W6-AA0S-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-WD-A7RX-01A-12R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-WD-A7RX-01A-12R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-WD-A7RX-01A-12R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-YR-A95A-01A-12R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-YR-A95A-01A-12R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-YR-A95A-01A-12R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-ZD-A8I3-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-ZD-A8I3-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-ZD-A8I3-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-ZH-A8Y1-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-ZH-A8Y1-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-ZH-A8Y1-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-ZH-A8Y2-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-ZH-A8Y2-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-ZH-A8Y2-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-ZH-A8Y4-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-ZH-A8Y4-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-ZH-A8Y4-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-ZH-A8Y5-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-ZH-A8Y5-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-ZH-A8Y5-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-ZH-A8Y6-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-ZH-A8Y6-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-ZH-A8Y6-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-ZH-A8Y8-01A-51R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-ZH-A8Y8-01A-51R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-ZH-A8Y8-01A-51R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-ZU-A8S4-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-ZU-A8S4-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-ZU-A8S4-01A-11R-A41I-07 | (TODO) -- GDC | mRNA__counts__FPKM |
TCGA-CHOL Primary Tumor miR Data
Table S14.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-3X-AAV9-01A-72R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-3X-AAV9-01A-72R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-3X-AAVA-01A-11R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-3X-AAVA-01A-11R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-3X-AAVB-01A-31R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-3X-AAVB-01A-31R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-3X-AAVC-01A-21R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-3X-AAVC-01A-21R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-3X-AAVE-01A-11R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-3X-AAVE-01A-11R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-4G-AAZO-01A-12R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-4G-AAZO-01A-12R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-4G-AAZT-01A-11R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-4G-AAZT-01A-11R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-W5-AA2G-01A-11R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-W5-AA2G-01A-11R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-W5-AA2H-01A-31R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-W5-AA2H-01A-31R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-W5-AA2I-01A-32R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-W5-AA2I-01A-32R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-W5-AA2O-01A-11R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-W5-AA2O-01A-11R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-W5-AA2Q-01A-11R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-W5-AA2Q-01A-11R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-W5-AA2R-01A-11R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-W5-AA2R-01A-11R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-W5-AA2T-01A-12R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-W5-AA2T-01A-12R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-W5-AA2U-01A-11R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-W5-AA2U-01A-11R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-W5-AA2W-01A-11R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-W5-AA2W-01A-11R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-W5-AA2X-01A-11R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-W5-AA2X-01A-11R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-W5-AA2Z-01A-11R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-W5-AA2Z-01A-11R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-W5-AA30-01A-31R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-W5-AA30-01A-31R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-W5-AA31-01A-11R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-W5-AA31-01A-11R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-W5-AA33-01A-11R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-W5-AA33-01A-11R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-W5-AA34-01A-11R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-W5-AA34-01A-11R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-W5-AA36-01A-11R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-W5-AA36-01A-11R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-W5-AA38-01A-11R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-W5-AA38-01A-11R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-W5-AA39-01A-11R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-W5-AA39-01A-11R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-W6-AA0S-01A-11R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-W6-AA0S-01A-11R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-WD-A7RX-01A-12R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-WD-A7RX-01A-12R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-YR-A95A-01A-12R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-YR-A95A-01A-12R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-ZD-A8I3-01A-11R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-ZD-A8I3-01A-11R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-ZH-A8Y1-01A-11R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-ZH-A8Y1-01A-11R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-ZH-A8Y2-01A-11R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-ZH-A8Y2-01A-11R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-ZH-A8Y4-01A-11R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-ZH-A8Y4-01A-11R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-ZH-A8Y5-01A-11R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-ZH-A8Y5-01A-11R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-ZH-A8Y6-01A-11R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-ZH-A8Y6-01A-11R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-ZH-A8Y8-01A-51R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-ZH-A8Y8-01A-51R-A41D-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-ZU-A8S4-01A-11R-A41D-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-ZU-A8S4-01A-11R-A41D-13 | (TODO) -- GDC | miR__isoformExp |
TCGA-CHOL Primary Tumor MAF Data
Table S15.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-3X-AAV9-01A-72D-A417-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-3X-AAVA-01A-11D-A417-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-3X-AAVB-01A-31D-A417-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-3X-AAVC-01A-21D-A417-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-3X-AAVE-01A-11D-A417-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-4G-AAZF-01A-12D-A46P-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-4G-AAZG-01A-11D-A46P-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-4G-AAZO-01A-12D-A417-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-4G-AAZR-01A-11D-A46P-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-4G-AAZT-01A-11D-A417-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-5A-A8ZF-01A-12D-A46P-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-5A-A8ZG-01A-11D-A46P-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-W5-AA2G-01A-11D-A417-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-W5-AA2H-01A-31D-A417-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-W5-AA2I-01A-32D-A417-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-W5-AA2J-01A-31D-A46P-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-W5-AA2K-01A-11D-A46P-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-W5-AA2M-01A-11D-A46P-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-W5-AA2O-01A-11D-A417-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-W5-AA2Q-01A-11D-A417-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-W5-AA2R-01A-11D-A417-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-W5-AA2T-01A-12D-A417-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-W5-AA2U-01A-11D-A417-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-W5-AA2W-01A-11D-A417-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-W5-AA2X-01A-11D-A417-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-W5-AA2Z-01A-11D-A417-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-W5-AA30-01A-31D-A417-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-W5-AA31-01A-11D-A417-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-W5-AA33-01A-11D-A417-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-W5-AA34-01A-11D-A417-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-W5-AA36-01A-11D-A417-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-W5-AA38-01A-11D-A417-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-W5-AA39-01A-11D-A417-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-W6-AA0S-01A-11D-A417-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-W6-AA0T-01A-31D-A46P-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-W7-A93N-01A-11D-A46P-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-W7-A93O-01A-31D-A46P-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-W7-A93P-01A-12D-A46P-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-WD-A7RX-01A-12D-A417-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-YR-A95A-01A-12D-A417-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-ZD-A8I3-01A-11D-A417-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-ZH-A8Y1-01A-11D-A417-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-ZH-A8Y2-01A-11D-A417-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-ZH-A8Y3-01A-11D-A46P-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-ZH-A8Y4-01A-11D-A417-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-ZH-A8Y5-01A-11D-A417-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-ZH-A8Y6-01A-11D-A417-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-ZH-A8Y7-01A-21D-A46P-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-ZH-A8Y8-01A-51D-A417-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-ZK-AAYZ-01A-12D-A46P-09 | (TODO) -- GDC | SNV__mutect | |
| TCGA-ZU-A8S4-01A-11D-A417-09 | (TODO) -- GDC | SNV__mutect |
TCGA-CHOL Primary Tumor Methylation Data
Table S16.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-3X-AAV9-01A-72D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-3X-AAVA-01A-11D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-3X-AAVB-01A-31D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-3X-AAVC-01A-21D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-3X-AAVE-01A-11D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-4G-AAZO-01A-12D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-4G-AAZT-01A-11D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-W5-AA2G-01A-11D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-W5-AA2H-01A-31D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-W5-AA2I-01A-32D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-W5-AA2O-01A-11D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-W5-AA2Q-01A-11D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-W5-AA2R-01A-11D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-W5-AA2T-01A-12D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-W5-AA2U-01A-11D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-W5-AA2W-01A-11D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-W5-AA2X-01A-11D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-W5-AA2Z-01A-11D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-W5-AA30-01A-31D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-W5-AA31-01A-11D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-W5-AA33-01A-11D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-W5-AA34-01A-11D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-W5-AA36-01A-11D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-W5-AA38-01A-11D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-W5-AA39-01A-11D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-W6-AA0S-01A-11D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-WD-A7RX-01A-12D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-YR-A95A-01A-12D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-ZD-A8I3-01A-11D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-ZH-A8Y1-01A-11D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-ZH-A8Y2-01A-11D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-ZH-A8Y4-01A-11D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-ZH-A8Y5-01A-11D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-ZH-A8Y6-01A-11D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-ZH-A8Y8-01A-51D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-ZU-A8S4-01A-11D-A418-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
The sample type short letter codes in the table above are defined in the following list.
-
TP: Primary Tumor
-
TR: Recurrent Tumor
-
TB: Primary Blood Derived Cancer - Peripheral Blood
-
TRBM: Recurrent Blood Derived Cancer - Bone Marrow
-
TAP: Additional - New Primary
-
TM: Metastatic
-
TAM: Additional Metastatic
-
THOC: Human Tumor Original Cells
-
TBM: Primary Blood Derived Cancer - Bone Marrow
-
NB: Blood Derived Normal
-
NT: Solid Tissue Normal
-
NBC: Buccal Cell Normal
-
NEBV: EBV Immortalized Normal
-
NBM: Bone Marrow Normal
-
CELLC: Control Analyte
-
TRB: Recurrent Blood Derived Cancer - Peripheral Blood
-
CELL: Cell Lines
-
XP: Primary Xenograft Tissue
-
XCL: Cell Line Derived Xenograft Tissue
Figure 1. Get High-res Image This figure depicts the distribution of available data on a per participant basis.
Results
Filtered Samples
Methods & Data