stddata__2018_01_16 Samples Report

- Overview

+ Introduction

- Summary

There were 0 redactions, 1138 replicate aliquots, 0 blacklisted aliquots, and 0 FFPE aliquots. The table below represents the sample counts for those samples that were ingested into firehose after filtering out redactions, replicates, and blacklisted data, and segregating FFPEs.

Table 1. Get Full Table Summary of TCGA Tumor Data. Click on a tumor type to display a tumor type specific Samples Report.

Cohort	BCR	Clinical	CN	mRNA	miR	MAF	Methylation
TCGA-ACC	92	92	90	79	80	92	80
TCGA-BLCA	412	412	412	408	409	412	412
TCGA-BRCA	1097	1096	1094	1085	1078	1044	1094
TCGA-CESC	307	307	295	304	307	305	307
TCGA-CHOL	51	45	36	36	36	51	36
TCGA-COAD	461	459	450	456	444	432	458
TCGA-COADREAD	633	629	614	622	605	589	623
TCGA-DLBC	58	48	48	48	47	48	48
TCGA-ESCA	185	185	184	161	184	184	185
TCGA-GBM	616	595	590	154	0	396	422
TCGA-GBMLGG	1131	1109	1104	665	512	909	937
TCGA-HNSC	527	527	517	500	523	510	527
TCGA-KICH	113	113	66	65	66	66	66
TCGA-KIPAN	940	940	886	883	873	693	889
TCGA-KIRC	536	536	530	530	516	339	532
TCGA-KIRP	291	291	290	288	291	288	291
TCGA-LAML	200	200	143	151	103	149	140
TCGA-LGG	515	514	514	511	512	513	515
TCGA-LIHC	377	377	375	371	372	375	377
TCGA-LUAD	584	521	518	513	513	569	577
TCGA-LUSC	503	503	503	501	478	497	502
TCGA-MESO	87	87	87	86	87	83	87
TCGA-OV	607	586	568	374	489	441	591
TCGA-PAAD	185	185	184	177	178	183	184
TCGA-PANGI	1261	1257	1240	1158	1225	1214	1251
TCGA-PCPG	179	179	178	178	179	179	179
TCGA-PRAD	500	500	495	495	494	498	497
TCGA-READ	172	170	164	166	161	157	165
TCGA-SARC	261	261	260	259	259	255	261
TCGA-SKCM	470	470	368	367	352	368	368
TCGA-STAD	443	443	442	375	436	441	443
TCGA-STES	628	628	626	536	620	625	628
TCGA-TGCT	150	134	134	150	150	150	150
TCGA-THCA	506	506	505	502	506	496	506
TCGA-THYM	124	124	124	119	124	123	124
TCGA-UCEC	559	547	540	543	538	542	546
TCGA-UCS	57	57	56	56	57	57	57
TCGA-UVM	80	80	80	80	80	80	80
Totals	11305	11150	10840	10088	10049	10323	10807

- Results

+ Sample Heatmaps

TCGA-ACC

Figure 1. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-BLCA

Figure 2. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-BRCA

Figure 3. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-CESC

Figure 4. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-CHOL

Figure 5. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-COAD

Figure 6. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-COADREAD

Figure 7. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-DLBC

Figure 8. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-ESCA

Figure 9. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-GBM

Figure 10. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-GBMLGG

Figure 11. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-HNSC

Figure 12. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-KICH

Figure 13. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-KIPAN

Figure 14. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-KIRC

Figure 15. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-KIRP

Figure 16. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-LAML

Figure 17. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-LGG

Figure 18. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-LIHC

Figure 19. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-LUAD

Figure 20. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-LUSC

Figure 21. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-MESO

Figure 22. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-OV

Figure 23. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-PAAD

Figure 24. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-PANGI

Figure 25. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-PCPG

Figure 26. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-PRAD

Figure 27. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-READ

Figure 28. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-SARC

Figure 29. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-SKCM

Figure 30. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-STAD

Figure 31. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-STES

Figure 32. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-TGCT

Figure 33. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-THCA

Figure 34. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-THYM

Figure 35. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-UCEC

Figure 36. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-UCS

Figure 37. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

TCGA-UVM

Figure 38. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

+ Filtered Samples

+ Methods & Data

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