stddata__2019_08_07 Samples Report
Overview
Introduction
Summary
There were 0 redactions, 0 replicate aliquots, 0 blacklisted aliquots, and 0 FFPE aliquots. The table below represents the sample counts for those samples that were ingested into firehose after filtering out redactions, replicates, and blacklisted data, and segregating FFPEs.
Cohort | BCR | Clinical | CN | mRNA | miR | MAF | Methylation |
---|---|---|---|---|---|---|---|
TCGA-ACC | 92 | 92 | 90 | 79 | 80 | 92 | 80 |
TCGA-BLCA | 412 | 412 | 412 | 408 | 409 | 412 | 412 |
TCGA-BRCA | 1098 | 1096 | 1093 | 1082 | 1075 | 1041 | 1091 |
TCGA-CESC | 307 | 307 | 294 | 303 | 306 | 304 | 306 |
TCGA-CHOL | 51 | 48 | 36 | 36 | 36 | 51 | 36 |
TCGA-COAD | 461 | 458 | 452 | 456 | 444 | 432 | 458 |
TCGA-COADREAD | 633 | 629 | 617 | 622 | 605 | 589 | 623 |
TCGA-DLBC | 58 | 48 | 48 | 48 | 47 | 37 | 48 |
TCGA-ESCA | 185 | 185 | 184 | 161 | 184 | 184 | 185 |
TCGA-GBM | 617 | 598 | 596 | 154 | 0 | 396 | 422 |
TCGA-GBMLGG | 1133 | 1112 | 1111 | 665 | 512 | 909 | 937 |
TCGA-HNSC | 528 | 527 | 522 | 500 | 523 | 510 | 527 |
TCGA-KICH | 113 | 113 | 66 | 65 | 66 | 66 | 66 |
TCGA-KIPAN | 941 | 940 | 888 | 883 | 873 | 693 | 889 |
TCGA-KIRC | 537 | 536 | 532 | 530 | 516 | 339 | 532 |
TCGA-KIRP | 291 | 291 | 290 | 288 | 291 | 288 | 291 |
TCGA-LAML | 200 | 200 | 200 | 151 | 188 | 149 | 140 |
TCGA-LGG | 516 | 514 | 515 | 511 | 512 | 513 | 515 |
TCGA-LIHC | 377 | 377 | 375 | 371 | 372 | 375 | 377 |
TCGA-LUAD | 585 | 522 | 518 | 513 | 513 | 569 | 577 |
TCGA-LUSC | 504 | 503 | 503 | 501 | 478 | 497 | 502 |
TCGA-MESO | 87 | 87 | 87 | 86 | 87 | 83 | 87 |
TCGA-OV | 608 | 586 | 587 | 374 | 489 | 441 | 591 |
TCGA-PAAD | 185 | 185 | 184 | 177 | 178 | 183 | 184 |
TCGA-PANGI | 1261 | 1257 | 1243 | 1158 | 1225 | 1214 | 1251 |
TCGA-PCPG | 179 | 179 | 178 | 178 | 179 | 179 | 179 |
TCGA-PRAD | 500 | 499 | 495 | 495 | 494 | 498 | 497 |
TCGA-READ | 172 | 171 | 165 | 166 | 161 | 157 | 165 |
TCGA-SARC | 261 | 261 | 260 | 259 | 259 | 255 | 261 |
TCGA-SKCM | 470 | 470 | 368 | 367 | 352 | 368 | 368 |
TCGA-STAD | 443 | 443 | 442 | 375 | 436 | 441 | 443 |
TCGA-STES | 628 | 628 | 626 | 536 | 620 | 625 | 628 |
TCGA-TGCT | 158 | 134 | 150 | 150 | 150 | 150 | 150 |
TCGA-THCA | 507 | 506 | 505 | 502 | 506 | 496 | 506 |
TCGA-THYM | 124 | 124 | 124 | 119 | 124 | 123 | 124 |
TCGA-UCEC | 560 | 547 | 540 | 543 | 538 | 542 | 546 |
TCGA-UCS | 57 | 57 | 56 | 56 | 57 | 57 | 57 |
TCGA-UVM | 80 | 80 | 80 | 80 | 80 | 80 | 80 |
Totals | 11323 | 11156 | 10947 | 10084 | 10130 | 10308 | 10803 |
Results
Sample Heatmaps
Filtered Samples
Methods & Data