TCGA-UCS Samples Report
2019_10_17 Data Snapshot
Overview
Introduction
This is a summary of data mirrored from the Genomic Data Commons (GDC) and processed by the GDCtools package. Note that some sample data will be filtered as unsuitable for downstream pipelines, through one of three mechanisms: redactions, replicate filtering, and blacklisting. The report lists the counts and types of the sample data, in both hyperlinked tables and heatmap images; describes the three filtering mechanisms; lists the samples removed by filtering, why they were removed; and (eventually will) catalog how the data have been annotated by the respective projects that submitted them to the GDC.
Summary
There were 0 redactions, 0 replicate aliquots, 0 blacklisted aliquots, and 0 FFPE aliquots. The table below represents the sample counts for those samples that were ingested into firehose after filtering out redactions, replicates, and blacklisted data, and segregating FFPEs.
Table 1. This table provides a breakdown of sample counts on a per sample type and, if applicable, per subtype basis. Each count is a link to a table containing a list of the samples that comprise that count and details pertaining to each individual sample (e.g. platform, sequencing center, etc.). Please note, there are usually multiple protocols per data type, so there are typically many more rows than the count implies.
| Sample.Type | BCR | Clinical | CN | mRNA | miR | MAF | Methylation |
|---|---|---|---|---|---|---|---|
| NB | 48 | 48 | 48 | 0 | 0 | 0 | 0 |
| NT | 6 | 6 | 6 | 0 | 0 | 0 | 0 |
| TP | 57 | 57 | 56 | 56 | 57 | 57 | 57 |
| Totals | 57 | 57 | 56 | 56 | 57 | 57 | 57 |
TCGA-UCS Blood Derived Normal BCR Data
Table S1.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-N5-A4R8 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RA | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RD | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RF | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RJ | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RM | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RN | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RO | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RT | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RU | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RV | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A59E | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A59F | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N6-A4V9 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N6-A4VG | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N7-A4Y0 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N7-A4Y5 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N7-A4Y8 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N7-A59B | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N8-A4PI | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N8-A4PL | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N8-A4PM | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N8-A4PN | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N8-A4PO | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N8-A4PP | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N8-A4PQ | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N8-A56S | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N9-A4Q1 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N9-A4Q3 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N9-A4Q4 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N9-A4Q7 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NA-A4QV | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NA-A4QW | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NA-A4QX | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NA-A4QY | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NA-A4R0 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NA-A4R1 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NA-A5I1 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-ND-A4WA | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-ND-A4WC | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-ND-A4WF | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NF-A4WU | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NF-A4X2 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NF-A5CP | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NG-A4VU | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NG-A4VW | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-QM-A5NM | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-QN-A5NN | (TODO) -- GDC | clinical__biospecimen |
TCGA-UCS Blood Derived Normal Clinical Data
Table S2.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-N5-A4R8 | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RA | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RD | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RF | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RJ | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RM | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RN | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RO | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RT | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RU | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RV | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A59E | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A59F | (TODO) -- GDC | clinical__primary | |
| TCGA-N6-A4V9 | (TODO) -- GDC | clinical__primary | |
| TCGA-N6-A4VG | (TODO) -- GDC | clinical__primary | |
| TCGA-N7-A4Y0 | (TODO) -- GDC | clinical__primary | |
| TCGA-N7-A4Y5 | (TODO) -- GDC | clinical__primary | |
| TCGA-N7-A4Y8 | (TODO) -- GDC | clinical__primary | |
| TCGA-N7-A59B | (TODO) -- GDC | clinical__primary | |
| TCGA-N8-A4PI | (TODO) -- GDC | clinical__primary | |
| TCGA-N8-A4PL | (TODO) -- GDC | clinical__primary | |
| TCGA-N8-A4PM | (TODO) -- GDC | clinical__primary | |
| TCGA-N8-A4PN | (TODO) -- GDC | clinical__primary | |
| TCGA-N8-A4PO | (TODO) -- GDC | clinical__primary | |
| TCGA-N8-A4PP | (TODO) -- GDC | clinical__primary | |
| TCGA-N8-A4PQ | (TODO) -- GDC | clinical__primary | |
| TCGA-N8-A56S | (TODO) -- GDC | clinical__primary | |
| TCGA-N9-A4Q1 | (TODO) -- GDC | clinical__primary | |
| TCGA-N9-A4Q3 | (TODO) -- GDC | clinical__primary | |
| TCGA-N9-A4Q4 | (TODO) -- GDC | clinical__primary | |
| TCGA-N9-A4Q7 | (TODO) -- GDC | clinical__primary | |
| TCGA-NA-A4QV | (TODO) -- GDC | clinical__primary | |
| TCGA-NA-A4QW | (TODO) -- GDC | clinical__primary | |
| TCGA-NA-A4QX | (TODO) -- GDC | clinical__primary | |
| TCGA-NA-A4QY | (TODO) -- GDC | clinical__primary | |
| TCGA-NA-A4R0 | (TODO) -- GDC | clinical__primary | |
| TCGA-NA-A4R1 | (TODO) -- GDC | clinical__primary | |
| TCGA-NA-A5I1 | (TODO) -- GDC | clinical__primary | |
| TCGA-ND-A4WA | (TODO) -- GDC | clinical__primary | |
| TCGA-ND-A4WC | (TODO) -- GDC | clinical__primary | |
| TCGA-ND-A4WF | (TODO) -- GDC | clinical__primary | |
| TCGA-NF-A4WU | (TODO) -- GDC | clinical__primary | |
| TCGA-NF-A4X2 | (TODO) -- GDC | clinical__primary | |
| TCGA-NF-A5CP | (TODO) -- GDC | clinical__primary | |
| TCGA-NG-A4VU | (TODO) -- GDC | clinical__primary | |
| TCGA-NG-A4VW | (TODO) -- GDC | clinical__primary | |
| TCGA-QM-A5NM | (TODO) -- GDC | clinical__primary | |
| TCGA-QN-A5NN | (TODO) -- GDC | clinical__primary |
TCGA-UCS Blood Derived Normal CN Data
Table S3.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-N5-A4R8-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N5-A4R8-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RA-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N5-A4RA-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RD-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N5-A4RD-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RF-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N5-A4RF-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RJ-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N5-A4RJ-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RM-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N5-A4RM-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RN-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N5-A4RN-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RO-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N5-A4RO-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RT-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N5-A4RT-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RU-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N5-A4RU-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RV-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N5-A4RV-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A59E-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N5-A59E-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A59F-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N5-A59F-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N6-A4V9-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N6-A4V9-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N6-A4VG-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N6-A4VG-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N7-A4Y0-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N7-A4Y0-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N7-A4Y5-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N7-A4Y5-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N7-A4Y8-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N7-A4Y8-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N7-A59B-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N7-A59B-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N8-A4PI-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N8-A4PI-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N8-A4PL-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N8-A4PL-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N8-A4PM-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N8-A4PM-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N8-A4PN-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N8-A4PN-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N8-A4PO-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N8-A4PO-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N8-A4PP-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N8-A4PP-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N8-A4PQ-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N8-A4PQ-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N8-A56S-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N8-A56S-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N9-A4Q1-10B-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N9-A4Q1-10B-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N9-A4Q3-10B-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N9-A4Q3-10B-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N9-A4Q4-10B-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N9-A4Q4-10B-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N9-A4Q7-10B-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N9-A4Q7-10B-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NA-A4QV-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-NA-A4QV-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NA-A4QW-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-NA-A4QW-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NA-A4QX-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-NA-A4QX-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NA-A4QY-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-NA-A4QY-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NA-A4R0-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-NA-A4R0-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NA-A4R1-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-NA-A4R1-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NA-A5I1-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-NA-A5I1-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-ND-A4WA-10B-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-ND-A4WA-10B-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-ND-A4WC-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-ND-A4WC-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-ND-A4WF-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-ND-A4WF-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NF-A4WU-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-NF-A4WU-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NF-A4X2-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-NF-A4X2-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NF-A5CP-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-NF-A5CP-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NG-A4VU-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-NG-A4VU-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NG-A4VW-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-NG-A4VW-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-QM-A5NM-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-QM-A5NM-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-QN-A5NN-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-QN-A5NN-10A-01D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
TCGA-UCS Solid Tissue Normal BCR Data
Table S4.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-N6-A4VC | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N6-A4VD | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N6-A4VE | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N6-A4VF | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N9-A4PZ | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N9-A4Q8 | (TODO) -- GDC | clinical__biospecimen |
TCGA-UCS Solid Tissue Normal Clinical Data
Table S5.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-N6-A4VC | (TODO) -- GDC | clinical__primary | |
| TCGA-N6-A4VD | (TODO) -- GDC | clinical__primary | |
| TCGA-N6-A4VE | (TODO) -- GDC | clinical__primary | |
| TCGA-N6-A4VF | (TODO) -- GDC | clinical__primary | |
| TCGA-N9-A4PZ | (TODO) -- GDC | clinical__primary | |
| TCGA-N9-A4Q8 | (TODO) -- GDC | clinical__primary |
TCGA-UCS Solid Tissue Normal CN Data
Table S6.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-N6-A4VC-11A-11D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N6-A4VC-11A-11D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N6-A4VD-11A-11D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N6-A4VD-11A-11D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N6-A4VE-11A-12D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N6-A4VE-11A-12D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N6-A4VF-11A-11D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N6-A4VF-11A-11D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N9-A4PZ-11A-11D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N9-A4PZ-11A-11D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N9-A4Q8-11A-11D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N9-A4Q8-11A-11D-A28T-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
TCGA-UCS Primary Tumor BCR Data
Table S7.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-N5-A4R8 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RA | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RD | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RF | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RJ | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RM | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RN | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RO | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RS | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RT | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RU | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A4RV | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A59E | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N5-A59F | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N6-A4V9 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N6-A4VC | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N6-A4VD | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N6-A4VE | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N6-A4VF | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N6-A4VG | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N7-A4Y0 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N7-A4Y5 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N7-A4Y8 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N7-A59B | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N8-A4PI | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N8-A4PL | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N8-A4PM | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N8-A4PN | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N8-A4PO | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N8-A4PP | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N8-A4PQ | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N8-A56S | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N9-A4PZ | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N9-A4Q1 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N9-A4Q3 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N9-A4Q4 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N9-A4Q7 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-N9-A4Q8 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NA-A4QV | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NA-A4QW | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NA-A4QX | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NA-A4QY | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NA-A4R0 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NA-A4R1 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NA-A5I1 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-ND-A4W6 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-ND-A4WA | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-ND-A4WC | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-ND-A4WF | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NF-A4WU | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NF-A4WX | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NF-A4X2 | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NF-A5CP | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NG-A4VU | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-NG-A4VW | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-QM-A5NM | (TODO) -- GDC | clinical__biospecimen | |
| TCGA-QN-A5NN | (TODO) -- GDC | clinical__biospecimen |
TCGA-UCS Primary Tumor Clinical Data
Table S8.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-N5-A4R8 | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RA | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RD | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RF | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RJ | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RM | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RN | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RO | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RS | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RT | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RU | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A4RV | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A59E | (TODO) -- GDC | clinical__primary | |
| TCGA-N5-A59F | (TODO) -- GDC | clinical__primary | |
| TCGA-N6-A4V9 | (TODO) -- GDC | clinical__primary | |
| TCGA-N6-A4VC | (TODO) -- GDC | clinical__primary | |
| TCGA-N6-A4VD | (TODO) -- GDC | clinical__primary | |
| TCGA-N6-A4VE | (TODO) -- GDC | clinical__primary | |
| TCGA-N6-A4VF | (TODO) -- GDC | clinical__primary | |
| TCGA-N6-A4VG | (TODO) -- GDC | clinical__primary | |
| TCGA-N7-A4Y0 | (TODO) -- GDC | clinical__primary | |
| TCGA-N7-A4Y5 | (TODO) -- GDC | clinical__primary | |
| TCGA-N7-A4Y8 | (TODO) -- GDC | clinical__primary | |
| TCGA-N7-A59B | (TODO) -- GDC | clinical__primary | |
| TCGA-N8-A4PI | (TODO) -- GDC | clinical__primary | |
| TCGA-N8-A4PL | (TODO) -- GDC | clinical__primary | |
| TCGA-N8-A4PM | (TODO) -- GDC | clinical__primary | |
| TCGA-N8-A4PN | (TODO) -- GDC | clinical__primary | |
| TCGA-N8-A4PO | (TODO) -- GDC | clinical__primary | |
| TCGA-N8-A4PP | (TODO) -- GDC | clinical__primary | |
| TCGA-N8-A4PQ | (TODO) -- GDC | clinical__primary | |
| TCGA-N8-A56S | (TODO) -- GDC | clinical__primary | |
| TCGA-N9-A4PZ | (TODO) -- GDC | clinical__primary | |
| TCGA-N9-A4Q1 | (TODO) -- GDC | clinical__primary | |
| TCGA-N9-A4Q3 | (TODO) -- GDC | clinical__primary | |
| TCGA-N9-A4Q4 | (TODO) -- GDC | clinical__primary | |
| TCGA-N9-A4Q7 | (TODO) -- GDC | clinical__primary | |
| TCGA-N9-A4Q8 | (TODO) -- GDC | clinical__primary | |
| TCGA-NA-A4QV | (TODO) -- GDC | clinical__primary | |
| TCGA-NA-A4QW | (TODO) -- GDC | clinical__primary | |
| TCGA-NA-A4QX | (TODO) -- GDC | clinical__primary | |
| TCGA-NA-A4QY | (TODO) -- GDC | clinical__primary | |
| TCGA-NA-A4R0 | (TODO) -- GDC | clinical__primary | |
| TCGA-NA-A4R1 | (TODO) -- GDC | clinical__primary | |
| TCGA-NA-A5I1 | (TODO) -- GDC | clinical__primary | |
| TCGA-ND-A4W6 | (TODO) -- GDC | clinical__primary | |
| TCGA-ND-A4WA | (TODO) -- GDC | clinical__primary | |
| TCGA-ND-A4WC | (TODO) -- GDC | clinical__primary | |
| TCGA-ND-A4WF | (TODO) -- GDC | clinical__primary | |
| TCGA-NF-A4WU | (TODO) -- GDC | clinical__primary | |
| TCGA-NF-A4WX | (TODO) -- GDC | clinical__primary | |
| TCGA-NF-A4X2 | (TODO) -- GDC | clinical__primary | |
| TCGA-NF-A5CP | (TODO) -- GDC | clinical__primary | |
| TCGA-NG-A4VU | (TODO) -- GDC | clinical__primary | |
| TCGA-NG-A4VW | (TODO) -- GDC | clinical__primary | |
| TCGA-QM-A5NM | (TODO) -- GDC | clinical__primary | |
| TCGA-QN-A5NN | (TODO) -- GDC | clinical__primary |
TCGA-UCS Primary Tumor CN Data
Table S9.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-N5-A4RA-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N5-A4RA-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RD-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N5-A4RD-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RF-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N5-A4RF-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RJ-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N5-A4RJ-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RM-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N5-A4RM-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RN-01A-12D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N5-A4RN-01A-12D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RO-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N5-A4RO-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RS-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N5-A4RS-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RT-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N5-A4RT-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RU-01A-31D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N5-A4RU-01A-31D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A4RV-01A-21D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N5-A4RV-01A-21D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A59E-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N5-A59E-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N5-A59F-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N5-A59F-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N6-A4V9-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N6-A4V9-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N6-A4VC-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N6-A4VC-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N6-A4VD-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N6-A4VD-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N6-A4VE-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N6-A4VE-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N6-A4VF-01A-31D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N6-A4VF-01A-31D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N6-A4VG-01A-31D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N6-A4VG-01A-31D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N7-A4Y0-01A-12D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N7-A4Y0-01A-12D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N7-A4Y5-01A-12D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N7-A4Y5-01A-12D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N7-A4Y8-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N7-A4Y8-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N7-A59B-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N7-A59B-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N8-A4PI-01A-21D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N8-A4PI-01A-21D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N8-A4PL-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N8-A4PL-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N8-A4PM-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N8-A4PM-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N8-A4PN-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N8-A4PN-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N8-A4PO-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N8-A4PO-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N8-A4PP-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N8-A4PP-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N8-A4PQ-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N8-A4PQ-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N8-A56S-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N8-A56S-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N9-A4PZ-01A-22D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N9-A4PZ-01A-22D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N9-A4Q1-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N9-A4Q1-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N9-A4Q3-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N9-A4Q3-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N9-A4Q4-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N9-A4Q4-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N9-A4Q7-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N9-A4Q7-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-N9-A4Q8-01A-31D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-N9-A4Q8-01A-31D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NA-A4QV-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-NA-A4QV-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NA-A4QW-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-NA-A4QW-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NA-A4QX-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-NA-A4QX-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NA-A4QY-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-NA-A4QY-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NA-A4R0-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-NA-A4R0-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NA-A4R1-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-NA-A4R1-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NA-A5I1-01A-21D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-NA-A5I1-01A-21D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-ND-A4W6-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-ND-A4W6-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-ND-A4WA-01A-12D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-ND-A4WA-01A-12D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-ND-A4WC-01A-21D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-ND-A4WC-01A-21D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-ND-A4WF-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-ND-A4WF-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NF-A4WU-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-NF-A4WU-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NF-A4WX-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-NF-A4WX-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NF-A4X2-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-NF-A4X2-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NF-A5CP-01A-12D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-NF-A5CP-01A-12D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NG-A4VU-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-NG-A4VU-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-NG-A4VW-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-NG-A4VW-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-QM-A5NM-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-QM-A5NM-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
| TCGA-QN-A5NN-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__unfiltered__snp6 |
| TCGA-QN-A5NN-01A-11D-A28Q-01 | Affymetrix SNP 6.0 | (TODO) -- GDC | CNV__snp6 |
TCGA-UCS Primary Tumor mRNA Data
Table S10.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-N5-A4R8-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N5-A4R8-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N5-A4R8-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N5-A4RA-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N5-A4RA-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N5-A4RA-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N5-A4RD-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N5-A4RD-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N5-A4RD-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N5-A4RF-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N5-A4RF-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N5-A4RF-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N5-A4RJ-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N5-A4RJ-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N5-A4RJ-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N5-A4RM-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N5-A4RM-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N5-A4RM-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N5-A4RN-01A-12R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N5-A4RN-01A-12R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N5-A4RN-01A-12R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N5-A4RO-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N5-A4RO-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N5-A4RO-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N5-A4RS-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N5-A4RS-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N5-A4RS-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N5-A4RT-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N5-A4RT-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N5-A4RT-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N5-A4RU-01A-31R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N5-A4RU-01A-31R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N5-A4RU-01A-31R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N5-A4RV-01A-21R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N5-A4RV-01A-21R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N5-A4RV-01A-21R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N5-A59E-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N5-A59E-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N5-A59E-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N5-A59F-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N5-A59F-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N5-A59F-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N6-A4V9-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N6-A4V9-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N6-A4V9-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N6-A4VC-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N6-A4VC-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N6-A4VC-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N6-A4VD-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N6-A4VD-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N6-A4VD-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N6-A4VE-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N6-A4VE-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N6-A4VE-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N6-A4VF-01A-31R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N6-A4VF-01A-31R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N6-A4VF-01A-31R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N6-A4VG-01A-31R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N6-A4VG-01A-31R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N6-A4VG-01A-31R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N7-A4Y0-01A-12R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N7-A4Y0-01A-12R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N7-A4Y0-01A-12R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N7-A4Y5-01A-12R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N7-A4Y5-01A-12R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N7-A4Y5-01A-12R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N7-A4Y8-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N7-A4Y8-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N7-A4Y8-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N7-A59B-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N7-A59B-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N7-A59B-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N8-A4PI-01A-21R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N8-A4PI-01A-21R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N8-A4PI-01A-21R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N8-A4PL-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N8-A4PL-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N8-A4PL-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N8-A4PM-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N8-A4PM-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N8-A4PM-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N8-A4PN-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N8-A4PN-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N8-A4PN-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N8-A4PO-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N8-A4PO-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N8-A4PO-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N8-A4PP-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N8-A4PP-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N8-A4PP-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N8-A4PQ-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N8-A4PQ-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N8-A4PQ-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N8-A56S-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N8-A56S-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N8-A56S-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N9-A4PZ-01A-22R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N9-A4PZ-01A-22R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N9-A4PZ-01A-22R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N9-A4Q1-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N9-A4Q1-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N9-A4Q1-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N9-A4Q3-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N9-A4Q3-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N9-A4Q3-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N9-A4Q4-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N9-A4Q4-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N9-A4Q4-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-N9-A4Q7-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-N9-A4Q7-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-N9-A4Q7-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-NA-A4QV-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-NA-A4QV-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-NA-A4QV-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-NA-A4QW-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-NA-A4QW-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-NA-A4QW-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-NA-A4QX-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-NA-A4QX-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-NA-A4QX-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-NA-A4QY-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-NA-A4QY-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-NA-A4QY-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-NA-A4R0-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-NA-A4R0-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-NA-A4R0-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-NA-A4R1-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-NA-A4R1-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-NA-A4R1-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-NA-A5I1-01A-21R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-NA-A5I1-01A-21R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-NA-A5I1-01A-21R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-ND-A4W6-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-ND-A4W6-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-ND-A4W6-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-ND-A4WA-01A-12R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-ND-A4WA-01A-12R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-ND-A4WA-01A-12R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-ND-A4WC-01A-21R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-ND-A4WC-01A-21R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-ND-A4WC-01A-21R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-ND-A4WF-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-ND-A4WF-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-ND-A4WF-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-NF-A4WU-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-NF-A4WU-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-NF-A4WU-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-NF-A4WX-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-NF-A4WX-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-NF-A4WX-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-NF-A4X2-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-NF-A4X2-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-NF-A4X2-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-NF-A5CP-01A-12R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-NF-A5CP-01A-12R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-NF-A5CP-01A-12R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-NG-A4VU-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-NG-A4VU-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-NG-A4VU-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-NG-A4VW-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-NG-A4VW-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-NG-A4VW-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-QM-A5NM-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-QM-A5NM-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-QM-A5NM-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM | |
| TCGA-QN-A5NN-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExpNormed__FPKM | |
| TCGA-QN-A5NN-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__geneExp__FPKM | |
| TCGA-QN-A5NN-01A-11R-A28V-07 | (TODO) -- GDC | mRNA__counts__FPKM |
TCGA-UCS Primary Tumor miR Data
Table S11.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-N5-A4R8-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N5-A4R8-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N5-A4RA-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N5-A4RA-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N5-A4RD-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N5-A4RD-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N5-A4RF-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N5-A4RF-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N5-A4RJ-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N5-A4RJ-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N5-A4RM-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N5-A4RM-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N5-A4RN-01A-12R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N5-A4RN-01A-12R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N5-A4RO-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N5-A4RO-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N5-A4RS-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N5-A4RS-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N5-A4RT-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N5-A4RT-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N5-A4RU-01A-31R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N5-A4RU-01A-31R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N5-A4RV-01A-21R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N5-A4RV-01A-21R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N5-A59E-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N5-A59E-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N5-A59F-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N5-A59F-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N6-A4V9-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N6-A4V9-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N6-A4VC-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N6-A4VC-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N6-A4VD-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N6-A4VD-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N6-A4VE-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N6-A4VE-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N6-A4VF-01A-31R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N6-A4VF-01A-31R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N6-A4VG-01A-31R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N6-A4VG-01A-31R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N7-A4Y0-01A-12R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N7-A4Y0-01A-12R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N7-A4Y5-01A-12R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N7-A4Y5-01A-12R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N7-A4Y8-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N7-A4Y8-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N7-A59B-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N7-A59B-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N8-A4PI-01A-21R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N8-A4PI-01A-21R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N8-A4PL-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N8-A4PL-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N8-A4PM-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N8-A4PM-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N8-A4PN-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N8-A4PN-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N8-A4PO-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N8-A4PO-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N8-A4PP-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N8-A4PP-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N8-A4PQ-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N8-A4PQ-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N8-A56S-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N8-A56S-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N9-A4PZ-01A-22R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N9-A4PZ-01A-22R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N9-A4Q1-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N9-A4Q1-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N9-A4Q3-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N9-A4Q3-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N9-A4Q4-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N9-A4Q4-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N9-A4Q7-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N9-A4Q7-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-N9-A4Q8-01A-31R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-N9-A4Q8-01A-31R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-NA-A4QV-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-NA-A4QV-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-NA-A4QW-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-NA-A4QW-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-NA-A4QX-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-NA-A4QX-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-NA-A4QY-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-NA-A4QY-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-NA-A4R0-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-NA-A4R0-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-NA-A4R1-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-NA-A4R1-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-NA-A5I1-01A-21R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-NA-A5I1-01A-21R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-ND-A4W6-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-ND-A4W6-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-ND-A4WA-01A-12R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-ND-A4WA-01A-12R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-ND-A4WC-01A-21R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-ND-A4WC-01A-21R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-ND-A4WF-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-ND-A4WF-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-NF-A4WU-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-NF-A4WU-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-NF-A4WX-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-NF-A4WX-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-NF-A4X2-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-NF-A4X2-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-NF-A5CP-01A-12R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-NF-A5CP-01A-12R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-NG-A4VU-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-NG-A4VU-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-NG-A4VW-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-NG-A4VW-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-QM-A5NM-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-QM-A5NM-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp | |
| TCGA-QN-A5NN-01A-11R-A28Z-13 | (TODO) -- GDC | miR__geneExp | |
| TCGA-QN-A5NN-01A-11R-A28Z-13 | (TODO) -- GDC | miR__isoformExp |
TCGA-UCS Primary Tumor MAF Data
Table S12.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-N5-A4R8-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N5-A4RA-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N5-A4RD-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N5-A4RF-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N5-A4RJ-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N5-A4RM-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N5-A4RN-01A-12D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N5-A4RO-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N5-A4RS-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N5-A4RT-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N5-A4RU-01A-31D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N5-A4RV-01A-21D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N5-A59E-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N5-A59F-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N6-A4V9-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N6-A4VC-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N6-A4VD-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N6-A4VE-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N6-A4VF-01A-31D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N6-A4VG-01A-31D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N7-A4Y0-01A-12D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N7-A4Y5-01A-12D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N7-A4Y8-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N7-A59B-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N8-A4PI-01A-21D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N8-A4PL-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N8-A4PM-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N8-A4PN-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N8-A4PO-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N8-A4PP-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N8-A4PQ-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N8-A56S-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N9-A4PZ-01A-22D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N9-A4Q1-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N9-A4Q3-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N9-A4Q4-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N9-A4Q7-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-N9-A4Q8-01A-31D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-NA-A4QV-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-NA-A4QW-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-NA-A4QX-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-NA-A4QY-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-NA-A4R0-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-NA-A4R1-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-NA-A5I1-01A-21D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-ND-A4W6-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-ND-A4WA-01A-12D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-ND-A4WC-01A-21D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-ND-A4WF-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-NF-A4WU-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-NF-A4WX-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-NF-A4X2-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-NF-A5CP-01A-12D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-NG-A4VU-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-NG-A4VW-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-QM-A5NM-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect | |
| TCGA-QN-A5NN-01A-11D-A28R-08 | (TODO) -- GDC | SNV__mutect |
TCGA-UCS Primary Tumor Methylation Data
Table S13.
| TCGA Barcode | Platform | Center | Annotation |
|---|---|---|---|
| TCGA-N5-A4R8-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N5-A4RA-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N5-A4RD-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N5-A4RF-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N5-A4RJ-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N5-A4RM-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N5-A4RN-01A-12D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N5-A4RO-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N5-A4RS-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N5-A4RT-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N5-A4RU-01A-31D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N5-A4RV-01A-21D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N5-A59E-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N5-A59F-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N6-A4V9-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N6-A4VC-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N6-A4VD-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N6-A4VE-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N6-A4VF-01A-31D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N6-A4VG-01A-31D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N7-A4Y0-01A-12D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N7-A4Y5-01A-12D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N7-A4Y8-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N7-A59B-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N8-A4PI-01A-21D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N8-A4PL-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N8-A4PM-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N8-A4PN-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N8-A4PO-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N8-A4PP-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N8-A4PQ-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N8-A56S-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N9-A4PZ-01A-22D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N9-A4Q1-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N9-A4Q3-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N9-A4Q4-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N9-A4Q7-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-N9-A4Q8-01A-31D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-NA-A4QV-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-NA-A4QW-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-NA-A4QX-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-NA-A4QY-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-NA-A4R0-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-NA-A4R1-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-NA-A5I1-01A-21D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-ND-A4W6-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-ND-A4WA-01A-12D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-ND-A4WC-01A-21D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-ND-A4WF-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-NF-A4WU-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-NF-A4WX-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-NF-A4X2-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-NF-A5CP-01A-12D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-NG-A4VU-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-NG-A4VW-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-QM-A5NM-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
| TCGA-QN-A5NN-01A-11D-A28S-05 | Illumina Human Methylation 450 | (TODO) -- GDC | methylation__HM450 |
The sample type short letter codes in the table above are defined in the following list.
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TP: Primary Tumor
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TR: Recurrent Tumor
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TB: Primary Blood Derived Cancer - Peripheral Blood
-
TRBM: Recurrent Blood Derived Cancer - Bone Marrow
-
TAP: Additional - New Primary
-
TM: Metastatic
-
TAM: Additional Metastatic
-
THOC: Human Tumor Original Cells
-
TBM: Primary Blood Derived Cancer - Bone Marrow
-
NB: Blood Derived Normal
-
NT: Solid Tissue Normal
-
NBC: Buccal Cell Normal
-
NEBV: EBV Immortalized Normal
-
NBM: Bone Marrow Normal
-
CELLC: Control Analyte
-
TRB: Recurrent Blood Derived Cancer - Peripheral Blood
-
CELL: Cell Lines
-
XP: Primary Xenograft Tissue
-
XCL: Cell Line Derived Xenograft Tissue
Figure 1. Get High-res Image This figure depicts the distribution of available data on a per participant basis.
Results
Filtered Samples
Methods & Data