Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
TACC2	10579	broad.mit.edu	37	10	123843281	123843281	+	Silent	SNP	C	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	17142151	17142151	+	Missense_Mutation	SNP	A	G	G			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SVIL	6840	broad.mit.edu	37	10	29777621	29777621	+	Silent	SNP	G	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
DSCAML1	57453	broad.mit.edu	37	11	117321323	117321323	+	Missense_Mutation	SNP	G	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRPM5	29850	broad.mit.edu	37	11	2439011	2439011	+	Missense_Mutation	SNP	C	G	G			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR4C6	219432	broad.mit.edu	37	11	55433539	55433539	+	Silent	SNP	C	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR5B21	219968	broad.mit.edu	37	11	58275356	58275356	+	Missense_Mutation	SNP	C	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
AHNAK	79026	broad.mit.edu	37	11	62288867	62288867	+	Missense_Mutation	SNP	G	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
AHNAK	79026	broad.mit.edu	37	11	62289475	62289475	+	Silent	SNP	C	G	G			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
AHNAK	79026	broad.mit.edu	37	11	62296133	62296133	+	Missense_Mutation	SNP	G	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
BRMS1	25855	broad.mit.edu	37	11	66105149	66105149	+	Missense_Mutation	SNP	G	C	C			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
DCHS1	8642	broad.mit.edu	37	11	6662141	6662141	+	Missense_Mutation	SNP	C	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRP5	4041	broad.mit.edu	37	11	68207276	68207276	+	Silent	SNP	C	A	A	rs11574420		TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SAPS3	55291	broad.mit.edu	37	11	68331848	68331848	+	Missense_Mutation	SNP	C	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPFIA1	8500	broad.mit.edu	37	11	70172733	70172733	+	Missense_Mutation	SNP	G	C	C			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC25A22	79751	broad.mit.edu	37	11	792032	792032	+	Silent	SNP	C	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101510560	101510560	+	Missense_Mutation	SNP	C	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
COQ5	84274	broad.mit.edu	37	12	120941790	120941790	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
EIF2B1	1967	broad.mit.edu	37	12	124109399	124109399	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANO6	196527	broad.mit.edu	37	12	45810576	45810576	+	Silent	SNP	C	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC38A2	54407	broad.mit.edu	37	12	46764360	46764360	+	Silent	SNP	C	G	G			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC38A2	54407	broad.mit.edu	37	12	46765071	46765071	+	Missense_Mutation	SNP	C	G	G			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
DYRK4	8798	broad.mit.edu	37	12	4708904	4708904	+	Missense_Mutation	SNP	C	G	G			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
WIF1	11197	broad.mit.edu	37	12	65448985	65448985	+	Missense_Mutation	SNP	C	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70314531	70314531	+	Silent	SNP	A	G	G			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
DACH1	1602	broad.mit.edu	37	13	72049858	72049858	+	Missense_Mutation	SNP	T	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
DOCK9	23348	broad.mit.edu	37	13	99520199	99520199	+	Missense_Mutation	SNP	C	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105419822	105419822	+	Missense_Mutation	SNP	G	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
NUDT14	256281	broad.mit.edu	37	14	105644073	105644073	+	Splice_Site	SNP	C	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23896042	23896042	+	Missense_Mutation	SNP	C	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
DLST	1743	broad.mit.edu	37	14	75369021	75369021	+	Silent	SNP	C	G	G			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
FLRT2	23768	broad.mit.edu	37	14	86088847	86088847	+	Missense_Mutation	SNP	C	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33872188	33872188	+	Missense_Mutation	SNP	G	C	C			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SCAPER	49855	broad.mit.edu	37	15	77025725	77025725	+	Missense_Mutation	SNP	C	G	G			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TELO2	9894	broad.mit.edu	37	16	1551483	1551483	+	Silent	SNP	C	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAHD1	81889	broad.mit.edu	37	16	1877398	1877398	+	Silent	SNP	C	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
POLR3E	55718	broad.mit.edu	37	16	22337220	22337220	+	Missense_Mutation	SNP	G	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SCNN1B	6338	broad.mit.edu	37	16	23387131	23387131	+	Missense_Mutation	SNP	C	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBXL19	54620	broad.mit.edu	37	16	30958453	30958453	+	Missense_Mutation	SNP	C	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF668	79759	broad.mit.edu	37	16	31075213	31075213	+	Missense_Mutation	SNP	G	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRRC29	26231	broad.mit.edu	37	16	67242311	67242311	+	Silent	SNP	A	G	G			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CNTNAP4	85445	broad.mit.edu	37	16	76569457	76569457	+	Missense_Mutation	SNP	G	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CPD	1362	broad.mit.edu	37	17	28778804	28778804	+	Missense_Mutation	SNP	T	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RARA	5914	broad.mit.edu	37	17	38510626	38510626	+	Missense_Mutation	SNP	C	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
HOXB4	3214	broad.mit.edu	37	17	46654110	46654110	+	Missense_Mutation	SNP	G	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
BCAS3	54828	broad.mit.edu	37	17	58952079	58952079	+	Missense_Mutation	SNP	C	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CD300LF	146722	broad.mit.edu	37	17	72691301	72691301	+	Silent	SNP	G	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7578190	7578190	+	Missense_Mutation	SNP	T	C	C			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
USP43	124739	broad.mit.edu	37	17	9631804	9631804	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDH2	1000	broad.mit.edu	37	18	25593677	25593677	+	Silent	SNP	C	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TCF4	6925	broad.mit.edu	37	18	52946874	52946874	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SERPINB13	5275	broad.mit.edu	37	18	61255985	61255985	+	Missense_Mutation	SNP	C	G	G			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMX3	54495	broad.mit.edu	37	18	66381117	66381117	+	Missense_Mutation	SNP	C	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF516	9658	broad.mit.edu	37	18	74153297	74153297	+	Missense_Mutation	SNP	C	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CARM1	10498	broad.mit.edu	37	19	11032381	11032381	+	Missense_Mutation	SNP	C	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF714	148206	broad.mit.edu	37	19	21281118	21281118	+	Splice_Site	SNP	G	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF99	7652	broad.mit.edu	37	19	22939544	22939544	+	Missense_Mutation	SNP	A	C	C	rs58378942		TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF555	148254	broad.mit.edu	37	19	2852822	2852822	+	Silent	SNP	G	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGEF1	9138	broad.mit.edu	37	19	42410144	42410144	+	Missense_Mutation	SNP	G	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF285	26974	broad.mit.edu	37	19	44891096	44891096	+	Silent	SNP	G	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF813	126017	broad.mit.edu	37	19	53994369	53994369	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
LILRA2	11027	broad.mit.edu	37	19	55085807	55085807	+	Missense_Mutation	SNP	C	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
NLRP2	55655	broad.mit.edu	37	19	55493697	55493697	+	Silent	SNP	C	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZIM3	114026	broad.mit.edu	37	19	57647056	57647056	+	Missense_Mutation	SNP	G	C	C			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR2Z1	284383	broad.mit.edu	37	19	8842207	8842207	+	Missense_Mutation	SNP	G	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118628687	118628687	+	Missense_Mutation	SNP	C	G	G			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
HIST2H2BF	440689	broad.mit.edu	37	1	149783666	149783666	+	Missense_Mutation	SNP	G	C	C			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152276103	152276103	+	Missense_Mutation	SNP	C	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP8B2	57198	broad.mit.edu	37	1	154321468	154321468	+	Silent	SNP	G	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR10T2	128360	broad.mit.edu	37	1	158368889	158368889	+	Missense_Mutation	SNP	C	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPOX	5498	broad.mit.edu	37	1	161140729	161140729	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RCSD1	92241	broad.mit.edu	37	1	167666699	167666699	+	Missense_Mutation	SNP	G	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RALGPS2	55103	broad.mit.edu	37	1	178753646	178753646	+	Missense_Mutation	SNP	G	C	C			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RNASEL	6041	broad.mit.edu	37	1	182555244	182555244	+	Missense_Mutation	SNP	T	C	C			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
NCF2	4688	broad.mit.edu	37	1	183532680	183532680	+	Missense_Mutation	SNP	A	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186092199	186092199	+	Missense_Mutation	SNP	G	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNH1	3756	broad.mit.edu	37	1	211276926	211276926	+	Silent	SNP	C	G	G			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
HIST3H2BB	128312	broad.mit.edu	37	1	228645991	228645991	+	Missense_Mutation	SNP	G	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR2L3	391192	broad.mit.edu	37	1	248224169	248224169	+	Silent	SNP	T	G	G			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39913530	39913530	+	Missense_Mutation	SNP	G	C	C			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
LEPRE1	64175	broad.mit.edu	37	1	43215938	43215938	+	Missense_Mutation	SNP	G	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
HYI	81888	broad.mit.edu	37	1	43917930	43917930	+	Missense_Mutation	SNP	C	G	G			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLEKHG5	57449	broad.mit.edu	37	1	6528318	6528318	+	Missense_Mutation	SNP	G	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
GBP4	115361	broad.mit.edu	37	1	89657153	89657153	+	Missense_Mutation	SNP	C	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF644	84146	broad.mit.edu	37	1	91406112	91406112	+	Missense_Mutation	SNP	G	C	C			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SIRPB2	284759	broad.mit.edu	37	20	1459226	1459226	+	Missense_Mutation	SNP	A	C	C			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CRNKL1	51340	broad.mit.edu	37	20	20026049	20026049	+	Missense_Mutation	SNP	C	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
C20orf96	140680	broad.mit.edu	37	20	256641	256641	+	Silent	SNP	G	C	C			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF341	84905	broad.mit.edu	37	20	32336848	32336848	+	Silent	SNP	G	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TGM2	7052	broad.mit.edu	37	20	36758657	36758657	+	Silent	SNP	C	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDH22	64405	broad.mit.edu	37	20	44856245	44856245	+	Missense_Mutation	SNP	A	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57767955	57767955	+	Silent	SNP	G	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TIAM1	7074	broad.mit.edu	37	21	32575277	32575277	+	Missense_Mutation	SNP	C	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ITSN1	6453	broad.mit.edu	37	21	35255954	35255954	+	Missense_Mutation	SNP	G	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MCM3AP	8888	broad.mit.edu	37	21	47674341	47674341	+	Silent	SNP	C	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
UPB1	51733	broad.mit.edu	37	22	24898113	24898113	+	Missense_Mutation	SNP	G	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
UPB1	51733	broad.mit.edu	37	22	24909450	24909450	+	Missense_Mutation	SNP	C	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
AP1B1	162	broad.mit.edu	37	22	29730359	29730359	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
IMP4	92856	broad.mit.edu	37	2	131103630	131103630	+	Missense_Mutation	SNP	G	C	C			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMEM163	81615	broad.mit.edu	37	2	135308215	135308215	+	Silent	SNP	G	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
NXPH2	11249	broad.mit.edu	37	2	139428760	139428761	+	Missense_Mutation	DNP	GT	AA	AA			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	166003482	166003482	+	Missense_Mutation	SNP	C	G	G			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179411904	179411904	+	Missense_Mutation	SNP	G	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
GTF3C3	9330	broad.mit.edu	37	2	197650253	197650253	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MRPL35	51318	broad.mit.edu	37	2	86434448	86434448	+	Missense_Mutation	SNP	A	C	C			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CBLB	868	broad.mit.edu	37	3	105378062	105378062	+	Missense_Mutation	SNP	C	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAJB11	51726	broad.mit.edu	37	3	186299223	186299223	+	Missense_Mutation	SNP	G	C	C			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PFKFB4	5210	broad.mit.edu	37	3	48573763	48573763	+	Silent	SNP	G	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAPKAPK3	7867	broad.mit.edu	37	3	50684226	50684226	+	Silent	SNP	C	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAPKAPK3	7867	broad.mit.edu	37	3	50685381	50685381	+	Silent	SNP	C	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLMAP	7871	broad.mit.edu	37	3	57827025	57827025	+	Splice_Site	SNP	G	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MTTP	4547	broad.mit.edu	37	4	100532321	100532321	+	Silent	SNP	G	C	C			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CENPE	1062	broad.mit.edu	37	4	104080302	104080302	+	Missense_Mutation	SNP	G	C	C			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CXXC4	80319	broad.mit.edu	37	4	105411974	105411974	+	Missense_Mutation	SNP	C	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114290876	114290876	+	Missense_Mutation	SNP	G	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126336800	126336800	+	Missense_Mutation	SNP	A	C	C			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM193A	8603	broad.mit.edu	37	4	2692602	2692602	+	Missense_Mutation	SNP	C	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
AFM	173	broad.mit.edu	37	4	74363404	74363404	+	Silent	SNP	C	G	G			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SEC31A	22872	broad.mit.edu	37	4	83776177	83776177	+	Silent	SNP	G	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIM36	55521	broad.mit.edu	37	5	114469698	114469698	+	Missense_Mutation	SNP	C	G	G			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHA1	56147	broad.mit.edu	37	5	140167231	140167231	+	Silent	SNP	G	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ELOVL7	79993	broad.mit.edu	37	5	60083198	60083198	+	Silent	SNP	C	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
FASTKD3	79072	broad.mit.edu	37	5	7867809	7867809	+	Missense_Mutation	SNP	C	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR98	84059	broad.mit.edu	37	5	89985850	89985850	+	Silent	SNP	A	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
POPDC3	64208	broad.mit.edu	37	6	105609536	105609536	+	Silent	SNP	T	C	C			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
T	6862	broad.mit.edu	37	6	166571980	166571980	+	Silent	SNP	C	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
HLA-A	3105	broad.mit.edu	37	6	29911314	29911314	+	Missense_Mutation	SNP	C	T	T	rs66792072		TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
FKBP5	2289	broad.mit.edu	37	6	35554818	35554818	+	Missense_Mutation	SNP	T	C	C	rs61753297		TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100678303	100678303	+	Silent	SNP	A	C	C			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARMC10	83787	broad.mit.edu	37	7	102727178	102727178	+	Silent	SNP	G	C	C			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126544099	126544099	+	Silent	SNP	T	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRGUK	136332	broad.mit.edu	37	7	133812300	133812300	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGEF5	7984	broad.mit.edu	37	7	144062382	144062382	+	Missense_Mutation	SNP	G	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151945220	151945220	+	Missense_Mutation	SNP	C	G	G			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
FERD3L	222894	broad.mit.edu	37	7	19184975	19184975	+	Missense_Mutation	SNP	T	C	C			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	31862705	31862705	+	Missense_Mutation	SNP	T	C	C			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SFRP4	6424	broad.mit.edu	37	7	37955842	37955842	+	Missense_Mutation	SNP	C	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
C7orf36	57002	broad.mit.edu	37	7	39612174	39612174	+	Missense_Mutation	SNP	G	C	C			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36793051	36793051	+	Silent	SNP	A	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MCPH1	79648	broad.mit.edu	37	8	6357451	6357451	+	Splice_Site	SNP	G	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
POP1	10940	broad.mit.edu	37	8	99168597	99168597	+	Missense_Mutation	SNP	G	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ALDOB	229	broad.mit.edu	37	9	104192127	104192127	+	Silent	SNP	G	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNM1	1759	broad.mit.edu	37	9	130984829	130984829	+	Missense_Mutation	SNP	G	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PAK3	5063	broad.mit.edu	37	X	110463610	110463610	+	Missense_Mutation	SNP	C	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
STAG2	10735	broad.mit.edu	37	X	123200039	123200039	+	Missense_Mutation	SNP	C	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
F8	2157	broad.mit.edu	37	X	154124398	154124398	+	Missense_Mutation	SNP	C	G	G			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
REPS2	9185	broad.mit.edu	37	X	17080618	17080618	+	Missense_Mutation	SNP	C	A	A			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC7A3	84889	broad.mit.edu	37	X	70149567	70149567	+	Missense_Mutation	SNP	G	C	C			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PHKA1	5255	broad.mit.edu	37	X	71839145	71839145	+	Missense_Mutation	SNP	C	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAGEE2	139599	broad.mit.edu	37	X	75003748	75003748	+	Missense_Mutation	SNP	A	G	G			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
EDC4	23644	broad.mit.edu	37	16	67911712	67911712	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PHLPP1	23239	broad.mit.edu	37	18	60562283	60562283	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM75A2	642265	broad.mit.edu	37	9	39361282	39361283	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BL-A13J-01	TCGA-BL-A13J-01									Somatic	Phase_I	Capture				Illumina GAIIx
