Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
MKI67	4288	broad.mit.edu	37	10	129900995	129900995	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0913	23053	broad.mit.edu	37	10	75548921	75548921	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR5M3	219482	broad.mit.edu	37	11	56237250	56237250	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
USP35	57558	broad.mit.edu	37	11	77924751	77924751	+	Silent	SNP	G	T	T			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
KNTC1	9735	broad.mit.edu	37	12	123041992	123041992	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
RASSF8	11228	broad.mit.edu	37	12	26217667	26217667	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
KRT73	319101	broad.mit.edu	37	12	53012081	53012081	+	Silent	SNP	G	A	A			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
FRS2	10818	broad.mit.edu	37	12	69968295	69968295	+	Missense_Mutation	SNP	A	C	C			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
BRF1	2972	broad.mit.edu	37	14	105685542	105685542	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
AKAP6	9472	broad.mit.edu	37	14	32902841	32902841	+	Missense_Mutation	SNP	T	A	A			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
USP8	9101	broad.mit.edu	37	15	50782647	50782647	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
THSD4	79875	broad.mit.edu	37	15	72030241	72030241	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCC6	368	broad.mit.edu	37	16	16297362	16297362	+	Silent	SNP	C	T	T			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
WDR90	197335	broad.mit.edu	37	16	703599	703599	+	Silent	SNP	G	A	A			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11592918	11592918	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC144A	9720	broad.mit.edu	37	17	16593762	16593762	+	Silent	SNP	G	A	A			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
TXNDC2	84203	broad.mit.edu	37	18	9886894	9886894	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
C19orf44	84167	broad.mit.edu	37	19	16612266	16612266	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
C19orf36	113177	broad.mit.edu	37	19	2098100	2098100	+	Silent	SNP	C	T	T			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
NLRP12	91662	broad.mit.edu	37	19	54327327	54327327	+	Silent	SNP	G	A	A			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9045585	9045585	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
AMY2B	280	broad.mit.edu	37	1	104117881	104117881	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
C1orf103	55791	broad.mit.edu	37	1	111495013	111495013	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
RSBN1	54665	broad.mit.edu	37	1	114308928	114308928	+	Silent	SNP	A	G	G			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP1A1	476	broad.mit.edu	37	1	116946551	116946551	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
LCE2B	26239	broad.mit.edu	37	1	152659331	152659331	+	Silent	SNP	G	A	A			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158592861	158592861	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186143685	186143685	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228444535	228444535	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
AKT3	10000	broad.mit.edu	37	1	243668581	243668581	+	Silent	SNP	T	C	C			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247587530	247587530	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0319L	79932	broad.mit.edu	37	1	35919962	35919962	+	Splice_Site	SNP	C	G	G			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
GBP7	388646	broad.mit.edu	37	1	89637586	89637586	+	Silent	SNP	C	A	A			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
TGM3	7053	broad.mit.edu	37	20	2321161	2321161	+	Silent	SNP	C	A	A			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40735463	40735463	+	Missense_Mutation	SNP	T	G	G			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM65C	140876	broad.mit.edu	37	20	49211102	49211102	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
SCN2A	6326	broad.mit.edu	37	2	166245543	166245543	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179475790	179475790	+	Silent	SNP	G	A	A			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50850546	50850546	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
MTHFD2	10797	broad.mit.edu	37	2	74432845	74432845	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
NEK11	79858	broad.mit.edu	37	3	130881325	130881325	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
C3orf45	132228	broad.mit.edu	37	3	50324241	50324241	+	Silent	SNP	G	A	A			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
INPP4B	8821	broad.mit.edu	37	4	143159109	143159110	+	Missense_Mutation	DNP	CC	TG	TG			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
FGG	2266	broad.mit.edu	37	4	155530879	155530879	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADAM29	11086	broad.mit.edu	37	4	175899049	175899049	+	Silent	SNP	G	A	A			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
FGFR3	2261	broad.mit.edu	37	4	1803564	1803564	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
HGFAC	3083	broad.mit.edu	37	4	3444616	3444616	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
CWH43	80157	broad.mit.edu	37	4	49040081	49040081	+	Missense_Mutation	SNP	A	T	T			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
MMRN1	22915	broad.mit.edu	37	4	90857417	90857417	+	Silent	SNP	G	A	A			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHAC2	56134	broad.mit.edu	37	5	140346900	140346900	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
GABRB2	2561	broad.mit.edu	37	5	160721255	160721255	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
PARP8	79668	broad.mit.edu	37	5	50137809	50137809	+	Silent	SNP	C	T	T			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
MRPS36	92259	broad.mit.edu	37	5	68524147	68524147	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
VCAN	1462	broad.mit.edu	37	5	82849280	82849280	+	Silent	SNP	C	T	T			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
C6orf27	80737	broad.mit.edu	37	6	31734406	31734406	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
CFB	629	broad.mit.edu	37	6	31901504	31901504	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
DSP	1832	broad.mit.edu	37	6	7579653	7579653	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
CUL1	8454	broad.mit.edu	37	7	148496370	148496370	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82784433	82784433	+	Silent	SNP	T	C	C			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
DLX6	1750	broad.mit.edu	37	7	96636997	96636997	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113668395	113668395	+	Missense_Mutation	SNP	T	A	A			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113678640	113678640	+	Silent	SNP	T	A	A			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
HSF1	3297	broad.mit.edu	37	8	145533230	145533230	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3076926	3076926	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR2T35	403244	broad.mit.edu	37	1	248801602	248801603	+	Frame_Shift_Ins	INS	-	CA	CA			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
SCN2A	6326	broad.mit.edu	37	2	166237618	166237619	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC136	64753	broad.mit.edu	37	7	128434455	128434457	+	In_Frame_Del	DEL	GAA	-	-			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
KDM6A	7403	broad.mit.edu	37	X	44896934	44896934	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BT-A0S7-01	TCGA-BT-A0S7-01									Somatic	Phase_I	Capture				Illumina GAIIx
