Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
FGF8	2253	broad.mit.edu	37	10	103531253	103531253	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
NT5C2	22978	broad.mit.edu	37	10	104857052	104857052	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
C10orf79	80217	broad.mit.edu	37	10	105903397	105903397	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TDRD1	56165	broad.mit.edu	37	10	115985891	115985891	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRUB1	142940	broad.mit.edu	37	10	116702491	116702491	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
UPF2	26019	broad.mit.edu	37	10	11994206	11994206	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
EIF3A	8661	broad.mit.edu	37	10	120809348	120809348	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLEKHA1	59338	broad.mit.edu	37	10	124152833	124152833	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124358515	124358515	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124358521	124358521	+	Nonsense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
C10orf137	26098	broad.mit.edu	37	10	127429114	127429114	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MSRB2	22921	broad.mit.edu	37	10	23408326	23408326	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANKRD26	22852	broad.mit.edu	37	10	27323766	27323766	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANKRD26	22852	broad.mit.edu	37	10	27323874	27323874	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARMC4	55130	broad.mit.edu	37	10	28151455	28151455	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ITGB1	3688	broad.mit.edu	37	10	33200926	33200926	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ITGB1	3688	broad.mit.edu	37	10	33224454	33224454	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
DIP2C	22982	broad.mit.edu	37	10	395346	395346	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PHYHIPL	84457	broad.mit.edu	37	10	61005268	61005268	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
RBM17	84991	broad.mit.edu	37	10	6143281	6143281	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
RTKN2	219790	broad.mit.edu	37	10	63977986	63977986	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRF1	5551	broad.mit.edu	37	10	72360406	72360406	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC29A3	55315	broad.mit.edu	37	10	73122191	73122191	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CAMK2G	818	broad.mit.edu	37	10	75574801	75574801	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CAMK2G	818	broad.mit.edu	37	10	75574821	75574821	+	Silent	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRIT2	340745	broad.mit.edu	37	10	85984808	85984808	+	Missense_Mutation	SNP	T	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
HECTD2	143279	broad.mit.edu	37	10	93220254	93220254	+	Silent	SNP	C	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TNKS2	80351	broad.mit.edu	37	10	93572839	93572839	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIF11	3832	broad.mit.edu	37	10	94405256	94405256	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CYP2C19	1557	broad.mit.edu	37	10	96540313	96540313	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
LCOR	84458	broad.mit.edu	37	10	98715053	98715053	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZFYVE27	118813	broad.mit.edu	37	10	99519006	99519006	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
YAP1	10413	broad.mit.edu	37	11	102100669	102100669	+	Nonstop_Mutation	SNP	T	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
GRIA4	2893	broad.mit.edu	37	11	105789548	105789548	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATM	472	broad.mit.edu	37	11	108160459	108160459	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPP2R1B	5519	broad.mit.edu	37	11	111636995	111636995	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
USP28	57646	broad.mit.edu	37	11	113697974	113697974	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MLL	4297	broad.mit.edu	37	11	118361911	118361911	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
USP47	55031	broad.mit.edu	37	11	11942014	11942014	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR8B8	26493	broad.mit.edu	37	11	124310898	124310898	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PANX3	116337	broad.mit.edu	37	11	124482954	124482954	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
FOXRED1	55572	broad.mit.edu	37	11	126139117	126139117	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNJ5	3762	broad.mit.edu	37	11	128781855	128781855	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
NFRKB	4798	broad.mit.edu	37	11	129762750	129762750	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
NCAPD3	23310	broad.mit.edu	37	11	134064592	134064592	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
IGF2	3481	broad.mit.edu	37	11	2154279	2154279	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF408	79797	broad.mit.edu	37	11	46727044	46727044	+	Silent	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
FNBP4	23360	broad.mit.edu	37	11	47752962	47752962	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
FNBP4	23360	broad.mit.edu	37	11	47753046	47753046	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
NUP160	23279	broad.mit.edu	37	11	47858484	47858484	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR5L2	26338	broad.mit.edu	37	11	55594852	55594852	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR5AK2	390181	broad.mit.edu	37	11	56757051	56757051	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRG2	5553	broad.mit.edu	37	11	57156683	57156683	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
GLYATL1	92292	broad.mit.edu	37	11	58723268	58723268	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC86	79080	broad.mit.edu	37	11	60610305	60610305	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
FADS3	3995	broad.mit.edu	37	11	61644427	61644427	+	Silent	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
AHNAK	79026	broad.mit.edu	37	11	62288785	62288785	+	Silent	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
B3GAT3	26229	broad.mit.edu	37	11	62384199	62384199	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAP4K2	5871	broad.mit.edu	37	11	64564578	64564578	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM89B	23625	broad.mit.edu	37	11	65340999	65340999	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM89B	23625	broad.mit.edu	37	11	65341111	65341111	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PACS1	55690	broad.mit.edu	37	11	65983668	65983668	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPTBN2	6712	broad.mit.edu	37	11	66460711	66460711	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CLCF1	23529	broad.mit.edu	37	11	67133035	67133035	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPP1CA	5499	broad.mit.edu	37	11	67166318	67166318	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPP1CA	5499	broad.mit.edu	37	11	67166321	67166321	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPP1CA	5499	broad.mit.edu	37	11	67166578	67166578	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TBC1D10C	374403	broad.mit.edu	37	11	67172956	67172956	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ALDH3B1	221	broad.mit.edu	37	11	67787235	67787235	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR10A5	144124	broad.mit.edu	37	11	6867346	6867346	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
FADD	8772	broad.mit.edu	37	11	70049613	70049613	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
FADD	8772	broad.mit.edu	37	11	70049620	70049620	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CAPN5	726	broad.mit.edu	37	11	76834804	76834804	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
NLRP10	338322	broad.mit.edu	37	11	7981789	7981789	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRDD	55367	broad.mit.edu	37	11	804358	804358	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
C11orf82	220042	broad.mit.edu	37	11	82643575	82643575	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ME3	10873	broad.mit.edu	37	11	86160971	86160971	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
DENND5A	23258	broad.mit.edu	37	11	9200526	9200526	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PIWIL4	143689	broad.mit.edu	37	11	94335120	94335120	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
DEPDC4	120863	broad.mit.edu	37	12	100649888	100649888	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
UTP20	27340	broad.mit.edu	37	12	101711260	101711260	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYBPC1	4604	broad.mit.edu	37	12	102036345	102036345	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANKRD13A	88455	broad.mit.edu	37	12	110463573	110463573	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
BRAP	8315	broad.mit.edu	37	12	112096587	112096587	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
NOS1	4842	broad.mit.edu	37	12	117685219	117685219	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CIT	11113	broad.mit.edu	37	12	120166373	120166373	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KDM2B	84678	broad.mit.edu	37	12	121882022	121882022	+	Silent	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SETD8	387893	broad.mit.edu	37	12	123875261	123875261	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PIWIL1	9271	broad.mit.edu	37	12	130830392	130830392	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR133	283383	broad.mit.edu	37	12	131498798	131498798	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
LST-3TM12	338821	broad.mit.edu	37	12	21200106	21200106	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
C12orf39	80763	broad.mit.edu	37	12	21680080	21680080	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
C12orf11	55726	broad.mit.edu	37	12	27066551	27066551	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
FGD4	121512	broad.mit.edu	37	12	32735372	32735372	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRRK2	120892	broad.mit.edu	37	12	40753217	40753217	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL2A1	1280	broad.mit.edu	37	12	48369179	48369179	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADCY6	112	broad.mit.edu	37	12	49176905	49176905	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
DDX23	9416	broad.mit.edu	37	12	49228219	49228219	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
DDX23	9416	broad.mit.edu	37	12	49231850	49231850	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MLL2	8085	broad.mit.edu	37	12	49434415	49434415	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNA1	3736	broad.mit.edu	37	12	5020928	5020928	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPRYD3	84926	broad.mit.edu	37	12	53460151	53460151	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPRYD3	84926	broad.mit.edu	37	12	53460160	53460160	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATF7	11016	broad.mit.edu	37	12	53911120	53911120	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR84	53831	broad.mit.edu	37	12	54756622	54756622	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PA2G4	5036	broad.mit.edu	37	12	56505295	56505295	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MIP	4284	broad.mit.edu	37	12	56848060	56848060	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
GLS2	27165	broad.mit.edu	37	12	56868840	56868840	+	Silent	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
DTX3	196403	broad.mit.edu	37	12	58001129	58001129	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
DPY19L2	283417	broad.mit.edu	37	12	63963010	63963010	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHD4	1108	broad.mit.edu	37	12	6690250	6690250	+	Silent	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
DYRK2	8445	broad.mit.edu	37	12	68052255	68052255	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KRR1	11103	broad.mit.edu	37	12	75900673	75900673	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78225383	78225383	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
C12orf50	160419	broad.mit.edu	37	12	88391905	88391905	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
WNK1	65125	broad.mit.edu	37	12	936320	936320	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TPP2	7174	broad.mit.edu	37	13	103298650	103298650	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC10A2	6555	broad.mit.edu	37	13	103701788	103701788	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM155A	728215	broad.mit.edu	37	13	108518440	108518440	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZMYM2	7750	broad.mit.edu	37	13	20567555	20567555	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZMYM2	7750	broad.mit.edu	37	13	20567608	20567608	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
LATS2	26524	broad.mit.edu	37	13	21562246	21562246	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MRP63	78988	broad.mit.edu	37	13	21751269	21751269	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
NBEA	26960	broad.mit.edu	37	13	36229746	36229746	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ELF1	1997	broad.mit.edu	37	13	41515451	41515451	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KBTBD6	89890	broad.mit.edu	37	13	41705016	41705016	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KBTBD6	89890	broad.mit.edu	37	13	41705099	41705099	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KBTBD6	89890	broad.mit.edu	37	13	41706332	41706332	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
NAA16	79612	broad.mit.edu	37	13	41943355	41943355	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TNFSF11	8600	broad.mit.edu	37	13	43180957	43180957	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KPNA3	3839	broad.mit.edu	37	13	50276524	50276524	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KPNA3	3839	broad.mit.edu	37	13	50299570	50299570	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KPNA3	3839	broad.mit.edu	37	13	50299581	50299581	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPC5	2262	broad.mit.edu	37	13	92560198	92560198	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
BAG5	9529	broad.mit.edu	37	14	104026370	104026370	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
BAG5	9529	broad.mit.edu	37	14	104026577	104026577	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KLC1	3831	broad.mit.edu	37	14	104037964	104037964	+	Nonsense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
INF2	64423	broad.mit.edu	37	14	105169764	105169764	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
INF2	64423	broad.mit.edu	37	14	105177451	105177451	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20841487	20841487	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
RNASE10	338879	broad.mit.edu	37	14	20978929	20978929	+	Nonsense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHD8	57680	broad.mit.edu	37	14	21863460	21863460	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDH24	64403	broad.mit.edu	37	14	23524387	23524387	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
HECTD1	25831	broad.mit.edu	37	14	31574848	31574848	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PSMA6	5687	broad.mit.edu	37	14	35786501	35786501	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CTAGE5	4253	broad.mit.edu	37	14	39762517	39762517	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
FANCM	57697	broad.mit.edu	37	14	45658401	45658401	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
NIN	51199	broad.mit.edu	37	14	51196370	51196370	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
NIN	51199	broad.mit.edu	37	14	51204915	51204915	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MUDENG	55745	broad.mit.edu	37	14	57741516	57741516	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARID4A	5926	broad.mit.edu	37	14	58831340	58831340	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
C14orf39	317761	broad.mit.edu	37	14	60923747	60923747	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PSEN1	5663	broad.mit.edu	37	14	73614734	73614734	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACOT6	641372	broad.mit.edu	37	14	74086448	74086448	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PNMA1	9240	broad.mit.edu	37	14	74179622	74179622	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PNMA1	9240	broad.mit.edu	37	14	74180243	74180243	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
C14orf115	55237	broad.mit.edu	37	14	74824670	74824670	+	Nonsense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTLL5	23093	broad.mit.edu	37	14	76249706	76249706	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTLL5	23093	broad.mit.edu	37	14	76249833	76249833	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
C14orf4	64207	broad.mit.edu	37	14	77492255	77492255	+	Silent	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SEL1L	6400	broad.mit.edu	37	14	81950592	81950592	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATG2B	55102	broad.mit.edu	37	14	96807895	96807895	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
AK7	122481	broad.mit.edu	37	14	96912857	96912857	+	Silent	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CASC5	57082	broad.mit.edu	37	15	40920870	40920870	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
DLL4	54567	broad.mit.edu	37	15	41229093	41229093	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
VPS39	23339	broad.mit.edu	37	15	42462051	42462051	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
GANC	2595	broad.mit.edu	37	15	42568597	42568597	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPIP5K1	9677	broad.mit.edu	37	15	43873500	43873500	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMOD2	29767	broad.mit.edu	37	15	52069173	52069173	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
WDR72	256764	broad.mit.edu	37	15	53908309	53908309	+	Silent	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
NEDD4	4734	broad.mit.edu	37	15	56130727	56130727	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPG21	51324	broad.mit.edu	37	15	65255979	65255979	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
C15orf44	81556	broad.mit.edu	37	15	65871820	65871820	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
HCN4	10021	broad.mit.edu	37	15	73660074	73660074	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACAN	176	broad.mit.edu	37	15	89398115	89398115	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CRTC3	64784	broad.mit.edu	37	15	91083274	91083274	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
FURIN	5045	broad.mit.edu	37	15	91424753	91424753	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
RSL1D1	26156	broad.mit.edu	37	16	11940562	11940562	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAPK8IP3	23162	broad.mit.edu	37	16	1756554	1756554	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PKD1	5310	broad.mit.edu	37	16	2159441	2159441	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
EARS2	124454	broad.mit.edu	37	16	23543988	23543988	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PALB2	79728	broad.mit.edu	37	16	23647411	23647411	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
DCTN5	84516	broad.mit.edu	37	16	23669929	23669929	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ERN2	10595	broad.mit.edu	37	16	23706204	23706204	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
AMDHD2	51005	broad.mit.edu	37	16	2570863	2570863	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SEZ6L2	26470	broad.mit.edu	37	16	29883590	29883590	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
INO80E	283899	broad.mit.edu	37	16	30007709	30007709	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
FUS	2521	broad.mit.edu	37	16	31195651	31195651	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF200	7752	broad.mit.edu	37	16	3273910	3273910	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF200	7752	broad.mit.edu	37	16	3273931	3273931	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF200	7752	broad.mit.edu	37	16	3273959	3273959	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF200	7752	broad.mit.edu	37	16	3273997	3273997	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF263	10127	broad.mit.edu	37	16	3339455	3339455	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
BTBD12	84464	broad.mit.edu	37	16	3656547	3656547	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
GLIS2	84662	broad.mit.edu	37	16	4382347	4382347	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CORO7	79585	broad.mit.edu	37	16	4412079	4412079	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPL	5493	broad.mit.edu	37	16	4933745	4933745	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADCY7	113	broad.mit.edu	37	16	50346030	50346030	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
BRD7	29117	broad.mit.edu	37	16	50384019	50384019	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
RSPRY1	89970	broad.mit.edu	37	16	57269103	57269103	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
RSPRY1	89970	broad.mit.edu	37	16	57269112	57269112	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARL2BP	23568	broad.mit.edu	37	16	57283691	57283691	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CNGB1	1258	broad.mit.edu	37	16	57918280	57918280	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZDHHC1	29800	broad.mit.edu	37	16	67428988	67428988	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CTCF	10664	broad.mit.edu	37	16	67662356	67662356	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
VAC14	55697	broad.mit.edu	37	16	70817025	70817025	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHST6	4166	broad.mit.edu	37	16	75512842	75512842	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLCG2	5336	broad.mit.edu	37	16	81934316	81934316	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPG7	6687	broad.mit.edu	37	16	89598329	89598329	+	Silent	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TUBB3	10381	broad.mit.edu	37	16	89998985	89998985	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11865486	11865486	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
FLCN	201163	broad.mit.edu	37	17	17116970	17116970	+	Nonstop_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ULK2	9706	broad.mit.edu	37	17	19689261	19689261	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0664	23277	broad.mit.edu	37	17	2593932	2593932	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0100	9703	broad.mit.edu	37	17	26945942	26945942	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CORO6	84940	broad.mit.edu	37	17	27945892	27945892	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAB11FIP4	84440	broad.mit.edu	37	17	29850554	29850554	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPACA3	124912	broad.mit.edu	37	17	31318969	31318969	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
UNC45B	146862	broad.mit.edu	37	17	33507615	33507615	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCL3	6348	broad.mit.edu	37	17	34416051	34416051	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRPV3	162514	broad.mit.edu	37	17	3458046	3458046	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
DUSP14	11072	broad.mit.edu	37	17	35872727	35872727	+	Nonsense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDK12	51755	broad.mit.edu	37	17	37618767	37618767	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ERBB2	2064	broad.mit.edu	37	17	37884259	37884259	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
RARA	5914	broad.mit.edu	37	17	38512341	38512341	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCR7	1236	broad.mit.edu	37	17	38711549	38711549	+	Silent	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KRT31	3881	broad.mit.edu	37	17	39550344	39550344	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
DHX58	79132	broad.mit.edu	37	17	40260106	40260106	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
GHDC	84514	broad.mit.edu	37	17	40345373	40345373	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP6V0A1	535	broad.mit.edu	37	17	40622219	40622219	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MLX	6945	broad.mit.edu	37	17	40722180	40722180	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARL4D	379	broad.mit.edu	37	17	41477529	41477529	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ITGB3	3690	broad.mit.edu	37	17	45384893	45384893	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ALOX15	246	broad.mit.edu	37	17	4544957	4544957	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SKAP1	8631	broad.mit.edu	37	17	46239837	46239837	+	Silent	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CAMTA2	23125	broad.mit.edu	37	17	4877697	4877697	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIF1C	10749	broad.mit.edu	37	17	4904541	4904541	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIF1C	10749	broad.mit.edu	37	17	4905849	4905849	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIF1C	10749	broad.mit.edu	37	17	4925875	4925875	+	Silent	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SFRS1	6426	broad.mit.edu	37	17	56083263	56083263	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
HEATR6	63897	broad.mit.edu	37	17	58156203	58156203	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MED13	9969	broad.mit.edu	37	17	60072581	60072581	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC47	57003	broad.mit.edu	37	17	61842116	61842116	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TEX2	55852	broad.mit.edu	37	17	62290676	62290676	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
POLG2	11232	broad.mit.edu	37	17	62493011	62493011	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC16A6	9120	broad.mit.edu	37	17	66270075	66270075	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCA8	10351	broad.mit.edu	37	17	66914280	66914280	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCA10	10349	broad.mit.edu	37	17	67187420	67187420	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
OTOP2	92736	broad.mit.edu	37	17	72929594	72929594	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
C17orf28	283987	broad.mit.edu	37	17	72948414	72948414	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ITGB4	3691	broad.mit.edu	37	17	73738802	73738802	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TK1	7083	broad.mit.edu	37	17	76171137	76171137	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TK1	7083	broad.mit.edu	37	17	76171139	76171139	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
RNF213	57674	broad.mit.edu	37	17	78353431	78353431	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC38A10	124565	broad.mit.edu	37	17	79226054	79226054	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAB40B	10966	broad.mit.edu	37	17	80616472	80616472	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
AURKB	9212	broad.mit.edu	37	17	8111097	8111097	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
STX8	9482	broad.mit.edu	37	17	9448576	9448576	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ROCK1	6093	broad.mit.edu	37	18	18549123	18549123	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
METTL4	64863	broad.mit.edu	37	18	2547371	2547371	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
EMILIN2	84034	broad.mit.edu	37	18	2892354	2892354	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MEP1B	4225	broad.mit.edu	37	18	29795197	29795197	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
NOL4	8715	broad.mit.edu	37	18	31709969	31709969	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF397OS	100101467	broad.mit.edu	37	18	32833853	32833853	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
DLGAP1	9229	broad.mit.edu	37	18	3508616	3508616	+	Silent	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP5A1	498	broad.mit.edu	37	18	43669842	43669842	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SMAD2	4087	broad.mit.edu	37	18	45368266	45368266	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SMAD4	4089	broad.mit.edu	37	18	48591846	48591846	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	7023260	7023260	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANKRD12	23253	broad.mit.edu	37	18	9255144	9255144	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPAN-P2RY11	692312	broad.mit.edu	37	19	10221062	10221062	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATG4D	84971	broad.mit.edu	37	19	10657553	10657553	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATG4D	84971	broad.mit.edu	37	19	10657634	10657634	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATG4D	84971	broad.mit.edu	37	19	10663639	10663639	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
AP1M2	10053	broad.mit.edu	37	19	10692042	10692042	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SBNO2	22904	broad.mit.edu	37	19	1111584	1111584	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBXW9	84261	broad.mit.edu	37	19	12805444	12805444	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CACNA1A	773	broad.mit.edu	37	19	13409682	13409682	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
LPHN1	22859	broad.mit.edu	37	19	14269281	14269281	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR7A5	26659	broad.mit.edu	37	19	14938601	14938601	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
C19orf44	84167	broad.mit.edu	37	19	16611956	16611956	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
F2RL3	9002	broad.mit.edu	37	19	17000940	17000940	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MPV17L2	84769	broad.mit.edu	37	19	18305832	18305832	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CILP2	148113	broad.mit.edu	37	19	19651906	19651906	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
AP3D1	8943	broad.mit.edu	37	19	2116613	2116613	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF507	22847	broad.mit.edu	37	19	32844356	32844356	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIRREL2	84063	broad.mit.edu	37	19	36349402	36349402	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIRREL2	84063	broad.mit.edu	37	19	36349660	36349660	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF461	92283	broad.mit.edu	37	19	37130933	37130933	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
GGN	199720	broad.mit.edu	37	19	38877342	38877342	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39008108	39008108	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39061261	39061261	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
HNRNPUL1	11100	broad.mit.edu	37	19	41770632	41770632	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
EXOSC5	56915	broad.mit.edu	37	19	41892596	41892596	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PSG3	5671	broad.mit.edu	37	19	43233301	43233301	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
LYPD5	284348	broad.mit.edu	37	19	44301925	44301925	+	Missense_Mutation	SNP	C	T	T	rs114185213	by1000genomes	TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF222	7673	broad.mit.edu	37	19	44537161	44537161	+	Nonsense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF227	7770	broad.mit.edu	37	19	44739461	44739461	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
NKPD1	284353	broad.mit.edu	37	19	45655522	45655522	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNJ14	3770	broad.mit.edu	37	19	48967834	48967834	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPHK2	56848	broad.mit.edu	37	19	49132338	49132338	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPHK2	56848	broad.mit.edu	37	19	49132817	49132817	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLEKHA4	57664	broad.mit.edu	37	19	49362759	49362759	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC6A16	28968	broad.mit.edu	37	19	49814319	49814319	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRR12	57479	broad.mit.edu	37	19	50099726	50099726	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CPT1C	126129	broad.mit.edu	37	19	50209292	50209292	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CNOT3	4849	broad.mit.edu	37	19	54646863	54646863	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CNOT3	4849	broad.mit.edu	37	19	54646887	54646887	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
LILRB3	11025	broad.mit.edu	37	19	54724400	54724400	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
LILRB3	11025	broad.mit.edu	37	19	54746131	54746131	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPP1R12C	54776	broad.mit.edu	37	19	55610164	55610164	+	Silent	SNP	C	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYT5	6861	broad.mit.edu	37	19	55689630	55689630	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF17	7565	broad.mit.edu	37	19	57932476	57932476	+	Nonsense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF324	25799	broad.mit.edu	37	19	58982927	58982927	+	Silent	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MCOLN1	57192	broad.mit.edu	37	19	7591755	7591755	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TIMM44	10469	broad.mit.edu	37	19	8000015	8000015	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRTN3	5657	broad.mit.edu	37	19	847830	847830	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MARCH2	51257	broad.mit.edu	37	19	8503337	8503337	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	8999056	8999056	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF562	54811	broad.mit.edu	37	19	9767306	9767306	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CASZ1	54897	broad.mit.edu	37	1	10725233	10725233	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
RBM15	64783	broad.mit.edu	37	1	110882500	110882500	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MTOR	2475	broad.mit.edu	37	1	11184592	11184592	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHIA	27159	broad.mit.edu	37	1	111854982	111854982	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCND3	3752	broad.mit.edu	37	1	112318805	112318805	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC16A1	6566	broad.mit.edu	37	1	113460506	113460506	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
NOTCH2	4853	broad.mit.edu	37	1	120529700	120529700	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
VPS13D	55187	broad.mit.edu	37	1	12333105	12333105	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
VPS13D	55187	broad.mit.edu	37	1	12333134	12333134	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CGN	57530	broad.mit.edu	37	1	151498241	151498241	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TCHH	7062	broad.mit.edu	37	1	152083887	152083887	+	Silent	SNP	C	T	T	rs115769840	by1000genomes	TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152328793	152328793	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPRR2F	6705	broad.mit.edu	37	1	153085095	153085095	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
UBAP2L	9898	broad.mit.edu	37	1	154233401	154233401	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
THBS3	7059	broad.mit.edu	37	1	155172609	155172609	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PKLR	5313	broad.mit.edu	37	1	155264172	155264172	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ASH1L	55870	broad.mit.edu	37	1	155450350	155450350	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
FCRL5	83416	broad.mit.edu	37	1	157504671	157504671	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CD1E	913	broad.mit.edu	37	1	158323802	158323802	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR10K2	391107	broad.mit.edu	37	1	158390393	158390393	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PYHIN1	149628	broad.mit.edu	37	1	158908911	158908911	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ITLN2	142683	broad.mit.edu	37	1	160914989	160914989	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADAMTS4	9507	broad.mit.edu	37	1	161166037	161166037	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
BAT2L2	23215	broad.mit.edu	37	1	171509701	171509701	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYOC	4653	broad.mit.edu	37	1	171621260	171621260	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZBTB37	84614	broad.mit.edu	37	1	173839997	173839997	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PADI2	11240	broad.mit.edu	37	1	17395563	17395563	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PADI2	11240	broad.mit.edu	37	1	17395644	17395644	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PADI3	51702	broad.mit.edu	37	1	17575710	17575710	+	Silent	SNP	C	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TOR1AIP1	26092	broad.mit.edu	37	1	179851926	179851926	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
XPR1	9213	broad.mit.edu	37	1	180775197	180775197	+	Splice_Site	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
XPR1	9213	broad.mit.edu	37	1	180775240	180775240	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
LAMC2	3918	broad.mit.edu	37	1	183194782	183194782	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	185902803	185902803	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TPR	7175	broad.mit.edu	37	1	186324879	186324879	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
RGS2	5997	broad.mit.edu	37	1	192780193	192780193	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPP1R12B	4660	broad.mit.edu	37	1	202411574	202411574	+	Splice_Site	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYOG	4656	broad.mit.edu	37	1	203054957	203054957	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRELP	5549	broad.mit.edu	37	1	203453266	203453266	+	Silent	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP2B4	493	broad.mit.edu	37	1	203667370	203667370	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP2B4	493	broad.mit.edu	37	1	203693027	203693027	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPP1R15B	84919	broad.mit.edu	37	1	204379015	204379015	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPP1R15B	84919	broad.mit.edu	37	1	204379192	204379192	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPP1R15B	84919	broad.mit.edu	37	1	204379760	204379760	+	Silent	SNP	C	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
LOC642587	642587	broad.mit.edu	37	1	209605571	209605571	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SERTAD4	56256	broad.mit.edu	37	1	210411352	210411352	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
FLVCR1	28982	broad.mit.edu	37	1	213032118	213032118	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNK2	3776	broad.mit.edu	37	1	215256745	215256745	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ALPL	249	broad.mit.edu	37	1	21889741	21889741	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPRS	2058	broad.mit.edu	37	1	220213549	220213549	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
HLX	3142	broad.mit.edu	37	1	221053221	221053221	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
C1orf55	163859	broad.mit.edu	37	1	226180638	226180638	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDC42BPA	8476	broad.mit.edu	37	1	227261667	227261667	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARID4B	51742	broad.mit.edu	37	1	235357527	235357527	+	Splice_Site	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237774219	237774219	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
WDR64	128025	broad.mit.edu	37	1	241964444	241964444	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CEP170	9859	broad.mit.edu	37	1	243328908	243328908	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PAFAH2	5051	broad.mit.edu	37	1	26288494	26288494	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARID1A	8289	broad.mit.edu	37	1	27106166	27106166	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
YTHDF2	51441	broad.mit.edu	37	1	29070328	29070328	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTPRU	10076	broad.mit.edu	37	1	29609213	29609213	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
YARS	8565	broad.mit.edu	37	1	33245110	33245110	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SFPQ	6421	broad.mit.edu	37	1	35654606	35654606	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39797236	39797236	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TIE1	7075	broad.mit.edu	37	1	43783580	43783580	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0467	23334	broad.mit.edu	37	1	43893963	43893963	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0467	23334	broad.mit.edu	37	1	43905293	43905293	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CYP4A22	284541	broad.mit.edu	37	1	47614449	47614449	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CYB5RL	606495	broad.mit.edu	37	1	54644891	54644891	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
C1orf175	374977	broad.mit.edu	37	1	55136238	55136238	+	Silent	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
HOOK1	51361	broad.mit.edu	37	1	60336747	60336747	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAVER2	55225	broad.mit.edu	37	1	65296653	65296653	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
JAK1	3716	broad.mit.edu	37	1	65304176	65304176	+	Missense_Mutation	SNP	T	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
NOL9	79707	broad.mit.edu	37	1	6592664	6592664	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75699699	75699699	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
USP33	23032	broad.mit.edu	37	1	78163603	78163603	+	Silent	SNP	A	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82456494	82456494	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82456585	82456585	+	Missense_Mutation	SNP	G	C	C	rs41292984	by1000genomes	TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
RERE	473	broad.mit.edu	37	1	8418325	8418325	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86554904	86554904	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCBL2	56267	broad.mit.edu	37	1	89426873	89426873	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRRC8B	23507	broad.mit.edu	37	1	90049431	90049431	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLEKHN1	84069	broad.mit.edu	37	1	909923	909923	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TGFBR3	7049	broad.mit.edu	37	1	92193314	92193314	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC18	343099	broad.mit.edu	37	1	93649605	93649605	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CLSTN1	22883	broad.mit.edu	37	1	9801223	9801223	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
JAG1	182	broad.mit.edu	37	20	10632342	10632342	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ISM1	140862	broad.mit.edu	37	20	13251215	13251215	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SEL1L2	80343	broad.mit.edu	37	20	13850838	13850838	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
FOXA2	3170	broad.mit.edu	37	20	22563340	22563340	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABHD12	26090	broad.mit.edu	37	20	25295601	25295601	+	Silent	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
C20orf70	140683	broad.mit.edu	37	20	31760844	31760844	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
C20orf71	128861	broad.mit.edu	37	20	31813019	31813019	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CPNE1	8904	broad.mit.edu	37	20	34220101	34220101	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CTNNBL1	56259	broad.mit.edu	37	20	36488327	36488327	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
BPI	671	broad.mit.edu	37	20	36948673	36948673	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TOP1	7150	broad.mit.edu	37	20	39708734	39708734	+	Missense_Mutation	SNP	A	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SEMG2	6407	broad.mit.edu	37	20	43850714	43850714	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SEMG2	6407	broad.mit.edu	37	20	43850728	43850728	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF335	63925	broad.mit.edu	37	20	44577600	44577600	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTGIS	5740	broad.mit.edu	37	20	48130897	48130897	+	Silent	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC9A8	23315	broad.mit.edu	37	20	48497480	48497480	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SALL4	57167	broad.mit.edu	37	20	50408216	50408216	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
C20orf177	63939	broad.mit.edu	37	20	58520007	58520007	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
LAMA5	3911	broad.mit.edu	37	20	60921260	60921260	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
UCKL1	54963	broad.mit.edu	37	20	62577259	62577259	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
LIPI	149998	broad.mit.edu	37	21	15561577	15561577	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
NCAM2	4685	broad.mit.edu	37	21	22910264	22910264	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KRTAP13-2	337959	broad.mit.edu	37	21	31744044	31744044	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRAPPC10	7109	broad.mit.edu	37	21	45514011	45514011	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRAPPC10	7109	broad.mit.edu	37	21	45514050	45514050	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRAPPC10	7109	broad.mit.edu	37	21	45518306	45518306	+	Silent	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
AIRE	326	broad.mit.edu	37	21	45706995	45706995	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PEX26	55670	broad.mit.edu	37	22	18566266	18566266	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CLTCL1	8218	broad.mit.edu	37	22	19175222	19175222	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF70	7621	broad.mit.edu	37	22	24086954	24086954	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PIWIL3	440822	broad.mit.edu	37	22	25158438	25158438	+	Missense_Mutation	SNP	C	T	T	rs74518403		TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CRYBB1	1414	broad.mit.edu	37	22	27003913	27003914	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
AP1B1	162	broad.mit.edu	37	22	29752417	29752417	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ASCC2	84164	broad.mit.edu	37	22	30188508	30188508	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ELFN2	114794	broad.mit.edu	37	22	37770273	37770273	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
EIF3L	51386	broad.mit.edu	37	22	38273809	38273809	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MKL1	57591	broad.mit.edu	37	22	40815081	40815081	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
L3MBTL2	83746	broad.mit.edu	37	22	41626166	41626166	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
RIBC2	26150	broad.mit.edu	37	22	45818177	45818177	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
GTSE1	51512	broad.mit.edu	37	22	46693369	46693369	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MOV10L1	54456	broad.mit.edu	37	22	50563987	50563987	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLXNB2	23654	broad.mit.edu	37	22	50721499	50721499	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHKB	1120	broad.mit.edu	37	22	51020725	51020725	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
EIF5B	9669	broad.mit.edu	37	2	100011209	100011209	+	Silent	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
IL1RL1	9173	broad.mit.edu	37	2	102956721	102956721	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC9A4	389015	broad.mit.edu	37	2	103119999	103119999	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
GYPC	2995	broad.mit.edu	37	2	127453717	127453717	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR17	2840	broad.mit.edu	37	2	128408370	128408370	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
R3HDM1	23518	broad.mit.edu	37	2	136467039	136467039	+	Silent	SNP	A	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
NR4A2	4929	broad.mit.edu	37	2	157186256	157186256	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
GALNT5	11227	broad.mit.edu	37	2	158115547	158115547	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC4A10	57282	broad.mit.edu	37	2	162833271	162833271	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	165956815	165956815	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	167992460	167992460	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170083085	170083085	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KBTBD10	10324	broad.mit.edu	37	2	170367164	170367164	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
DLX2	1746	broad.mit.edu	37	2	172965328	172965328	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
NFE2L2	4780	broad.mit.edu	37	2	178098975	178098975	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179472934	179472934	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179583286	179583286	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179598113	179598113	+	Missense_Mutation	SNP	C	T	T	rs72648934		TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
NEUROD1	4760	broad.mit.edu	37	2	182543515	182543515	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDE1A	5136	broad.mit.edu	37	2	183095762	183095762	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM171B	165215	broad.mit.edu	37	2	187626715	187626715	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM171B	165215	broad.mit.edu	37	2	187626819	187626819	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYT1L	23040	broad.mit.edu	37	2	1914091	1914091	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABI2	10152	broad.mit.edu	37	2	204291976	204291976	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
IDH1	3417	broad.mit.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAP2	4133	broad.mit.edu	37	2	210557605	210557605	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TNS1	7145	broad.mit.edu	37	2	218712319	218712319	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220357396	220357396	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SGPP2	130367	broad.mit.edu	37	2	223389719	223389719	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
IRS1	3667	broad.mit.edu	37	2	227662879	227662879	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
IRS1	3667	broad.mit.edu	37	2	227663125	227663125	+	Silent	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL4A4	1286	broad.mit.edu	37	2	227886844	227886844	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL4A3	1285	broad.mit.edu	37	2	228163449	228163449	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIP12	9320	broad.mit.edu	37	2	230656622	230656622	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARMC9	80210	broad.mit.edu	37	2	232141419	232141419	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARMC9	80210	broad.mit.edu	37	2	232141443	232141443	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
HDAC4	9759	broad.mit.edu	37	2	240061422	240061422	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MTERFD2	130916	broad.mit.edu	37	2	242039257	242039257	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
D2HGDH	728294	broad.mit.edu	37	2	242707248	242707248	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TP53I3	9540	broad.mit.edu	37	2	24300523	24300523	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ASXL2	55252	broad.mit.edu	37	2	25976464	25976464	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
C2orf16	84226	broad.mit.edu	37	2	27801442	27801442	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
FOSL2	2355	broad.mit.edu	37	2	28616622	28616622	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC75	253635	broad.mit.edu	37	2	37319356	37319356	+	Silent	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SOS1	6654	broad.mit.edu	37	2	39213087	39213087	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ALMS1	7840	broad.mit.edu	37	2	73677000	73677000	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MOGS	7841	broad.mit.edu	37	2	74689052	74689052	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MRPL53	116540	broad.mit.edu	37	2	74699247	74699247	+	Nonstop_Mutation	SNP	C	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
HK2	3099	broad.mit.edu	37	2	75061718	75061718	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PROM2	150696	broad.mit.edu	37	2	95941808	95941808	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SNRNP200	23020	broad.mit.edu	37	2	96952861	96952861	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CNNM3	26505	broad.mit.edu	37	2	97494773	97494773	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
FANCD2	2177	broad.mit.edu	37	3	10089620	10089620	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
FANCD2	2177	broad.mit.edu	37	3	10091133	10091133	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZBTB11	27107	broad.mit.edu	37	3	101390113	101390113	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CBLB	868	broad.mit.edu	37	3	105438984	105438984	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGAP31	57514	broad.mit.edu	37	3	119101938	119101938	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
GOLGB1	2804	broad.mit.edu	37	3	121400701	121400701	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
GOLGB1	2804	broad.mit.edu	37	3	121417101	121417101	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KPNA1	3836	broad.mit.edu	37	3	122215299	122215299	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PARP9	83666	broad.mit.edu	37	3	122255822	122255822	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PARP14	54625	broad.mit.edu	37	3	122447406	122447406	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDIA5	10954	broad.mit.edu	37	3	122865043	122865043	+	Missense_Mutation	SNP	A	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADCY5	111	broad.mit.edu	37	3	123051504	123051504	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	123987680	123987680	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	123987800	123987800	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
C3orf37	56941	broad.mit.edu	37	3	129020945	129020945	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
C3orf37	56941	broad.mit.edu	37	3	129023525	129023525	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
C3orf37	56941	broad.mit.edu	37	3	129023626	129023626	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLXND1	23129	broad.mit.edu	37	3	129282030	129282030	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130290018	130290018	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PIK3R4	30849	broad.mit.edu	37	3	130464024	130464024	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
BFSP2	8419	broad.mit.edu	37	3	133185754	133185754	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
NUP210	23225	broad.mit.edu	37	3	13393439	13393439	+	Silent	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TXNDC6	347736	broad.mit.edu	37	3	138033219	138033219	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PIK3CB	5291	broad.mit.edu	37	3	138374293	138374293	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PIK3CB	5291	broad.mit.edu	37	3	138374305	138374305	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PIK3CB	5291	broad.mit.edu	37	3	138374308	138374308	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PIK3CB	5291	broad.mit.edu	37	3	138433362	138433362	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	140185546	140185546	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIM42	287015	broad.mit.edu	37	3	140401335	140401335	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
COMMD2	51122	broad.mit.edu	37	3	149459490	149459490	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLCH1	23007	broad.mit.edu	37	3	155199659	155199659	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIM59	286827	broad.mit.edu	37	3	160156857	160156857	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDCD10	11235	broad.mit.edu	37	3	167414911	167414911	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
GOLIM4	27333	broad.mit.edu	37	3	167759263	167759263	+	Splice_Site	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MECOM	2122	broad.mit.edu	37	3	168807914	168807915	+	Missense_Mutation	DNP	TC	AT	AT			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TBC1D5	9779	broad.mit.edu	37	3	17300041	17300041	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ECE2	9718	broad.mit.edu	37	3	184009972	184009972	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
C3orf70	285382	broad.mit.edu	37	3	184870595	184870595	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAJB11	51726	broad.mit.edu	37	3	186299204	186299204	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
RFC4	5984	broad.mit.edu	37	3	186510677	186510677	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
RFC4	5984	broad.mit.edu	37	3	186512523	186512523	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TPRG1	285386	broad.mit.edu	37	3	188925327	188925327	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
OPA1	4976	broad.mit.edu	37	3	193353228	193353228	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
OPA1	4976	broad.mit.edu	37	3	193364936	193364936	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
DLG1	1739	broad.mit.edu	37	3	196778504	196778504	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KAT2B	8850	broad.mit.edu	37	3	20082225	20082225	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
AZI2	64343	broad.mit.edu	37	3	28381983	28381983	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
UBP1	7342	broad.mit.edu	37	3	33450953	33450953	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
UBP1	7342	broad.mit.edu	37	3	33458292	33458292	+	Silent	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SCN11A	11280	broad.mit.edu	37	3	38921615	38921615	+	Splice_Site	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CX3CR1	1524	broad.mit.edu	37	3	39307706	39307706	+	Missense_Mutation	SNP	T	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF620	253639	broad.mit.edu	37	3	40557421	40557421	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
NKTR	4820	broad.mit.edu	37	3	42672757	42672757	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KBTBD5	131377	broad.mit.edu	37	3	42730464	42730464	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIF15	56992	broad.mit.edu	37	3	44893313	44893313	+	Missense_Mutation	SNP	G	C	C	rs77808243	by1000genomes	TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBXW12	285231	broad.mit.edu	37	3	48423544	48423544	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48621376	48621376	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
UQCRC1	7384	broad.mit.edu	37	3	48641043	48641043	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CELSR3	1951	broad.mit.edu	37	3	48684260	48684260	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
BSN	8927	broad.mit.edu	37	3	49690134	49690134	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CAMKV	79012	broad.mit.edu	37	3	49899235	49899235	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CYB561D2	11068	broad.mit.edu	37	3	50391174	50391174	+	Nonstop_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
RFT1	91869	broad.mit.edu	37	3	53157763	53157763	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
DCP1A	55802	broad.mit.edu	37	3	53326414	53326414	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC66	285331	broad.mit.edu	37	3	56647736	56647736	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SHQ1	55164	broad.mit.edu	37	3	72897422	72897422	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
GBE1	2632	broad.mit.edu	37	3	81586104	81586104	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
C3orf26	84319	broad.mit.edu	37	3	99865849	99865849	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SEC24B	10427	broad.mit.edu	37	4	110442741	110442741	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
NDST3	9348	broad.mit.edu	37	4	119163257	119163257	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126241888	126241888	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126371358	126371358	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126371891	126371891	+	Silent	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
C4orf29	80167	broad.mit.edu	37	4	128938605	128938605	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF330	27309	broad.mit.edu	37	4	142152618	142152618	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
USP38	84640	broad.mit.edu	37	4	144107121	144107121	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRSS48	345062	broad.mit.edu	37	4	152204409	152204409	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBXW7	55294	broad.mit.edu	37	4	153249501	153249501	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CC2D2A	57545	broad.mit.edu	37	4	15529226	15529226	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAPGEF2	9693	broad.mit.edu	37	4	160260433	160260433	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KLHL2	11275	broad.mit.edu	37	4	166220763	166220763	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
DDX60	55601	broad.mit.edu	37	4	169215078	169215078	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
WDR17	116966	broad.mit.edu	37	4	177052884	177052884	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
DCTD	1635	broad.mit.edu	37	4	183836719	183836719	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
WWC2	80014	broad.mit.edu	37	4	184233512	184233512	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SNX25	83891	broad.mit.edu	37	4	186188198	186188198	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
HAUS3	79441	broad.mit.edu	37	4	2233842	2233842	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDH7	5099	broad.mit.edu	37	4	30723906	30723906	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
HTT	3064	broad.mit.edu	37	4	3208288	3208288	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
GABRG1	2565	broad.mit.edu	37	4	46060556	46060556	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
GABRA4	2557	broad.mit.edu	37	4	46967025	46967025	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
OCIAD2	132299	broad.mit.edu	37	4	48901920	48901920	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAN2B2	23324	broad.mit.edu	37	4	6606942	6606942	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMPRSS11F	389208	broad.mit.edu	37	4	68935699	68935699	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
IL8	3576	broad.mit.edu	37	4	74607297	74607297	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CXCL5	6374	broad.mit.edu	37	4	74863775	74863775	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
HPSE	10855	broad.mit.edu	37	4	84230599	84230599	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
HPSE	10855	broad.mit.edu	37	4	84231203	84231203	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
HPGDS	27306	broad.mit.edu	37	4	95223298	95223298	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLCO4C1	353189	broad.mit.edu	37	5	101593786	101593786	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
NUDT12	83594	broad.mit.edu	37	5	102891757	102891757	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MARCH6	10299	broad.mit.edu	37	5	10403539	10403539	+	Silent	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC12A7	10723	broad.mit.edu	37	5	1064231	1064231	+	Silent	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
FER	2241	broad.mit.edu	37	5	108281850	108281850	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAN2A1	4124	broad.mit.edu	37	5	109026131	109026131	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CAMK4	814	broad.mit.edu	37	5	110818485	110818485	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TSSK1B	83942	broad.mit.edu	37	5	112769841	112769841	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNN2	3781	broad.mit.edu	37	5	113831654	113831654	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC6A19	340024	broad.mit.edu	37	5	1221314	1221314	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SHROOM1	134549	broad.mit.edu	37	5	132160910	132160910	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139905956	139905956	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139905979	139905979	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHA7	56141	broad.mit.edu	37	5	140214299	140214299	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHA9	9752	broad.mit.edu	37	5	140228411	140228411	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHB7	56129	broad.mit.edu	37	5	140553716	140553716	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHB14	56122	broad.mit.edu	37	5	140605331	140605331	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHGA7	56108	broad.mit.edu	37	5	140763130	140763130	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHGA9	56107	broad.mit.edu	37	5	140783493	140783493	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHGC5	56097	broad.mit.edu	37	5	140870089	140870089	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
GLRA1	2741	broad.mit.edu	37	5	151231107	151231107	+	Silent	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MRPL22	29093	broad.mit.edu	37	5	154330479	154330479	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
C5orf40	408263	broad.mit.edu	37	5	156770349	156770349	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
C5orf54	63920	broad.mit.edu	37	5	159822236	159822236	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MARCH11	441061	broad.mit.edu	37	5	16177875	16177875	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167553912	167553912	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168199850	168199850	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
STK10	6793	broad.mit.edu	37	5	171517362	171517362	+	Missense_Mutation	SNP	G	T	T	rs17074311	byFrequency;by1000genomes	TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPL26L1	51121	broad.mit.edu	37	5	172386933	172386933	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF354C	30832	broad.mit.edu	37	5	178506267	178506267	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTGER4	5734	broad.mit.edu	37	5	40692015	40692015	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPBP1	65056	broad.mit.edu	37	5	56545357	56545357	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CEP72	55722	broad.mit.edu	37	5	637659	637659	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CEP72	55722	broad.mit.edu	37	5	637664	637664	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC30A5	64924	broad.mit.edu	37	5	68412387	68412387	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC125	202243	broad.mit.edu	37	5	68616292	68616292	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAP1B	4131	broad.mit.edu	37	5	71491837	71491837	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7816985	7816985	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
BHMT2	23743	broad.mit.edu	37	5	78373343	78373343	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CMYA5	202333	broad.mit.edu	37	5	79027767	79027767	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR98	84059	broad.mit.edu	37	5	90449160	90449160	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHD1	1105	broad.mit.edu	37	5	98207807	98207807	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
FRK	2444	broad.mit.edu	37	6	116264315	116264315	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ROS1	6098	broad.mit.edu	37	6	117718277	117718277	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SMPDL3A	10924	broad.mit.edu	37	6	123127407	123127407	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRMT11	60487	broad.mit.edu	37	6	126320719	126320719	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TCF21	6943	broad.mit.edu	37	6	134210742	134210742	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152461256	152461256	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TULP4	56995	broad.mit.edu	37	6	158834155	158834155	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
T	6862	broad.mit.edu	37	6	166571975	166571975	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MLLT4	4301	broad.mit.edu	37	6	168344641	168344641	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZFP57	346171	broad.mit.edu	37	6	29641179	29641179	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
RNF39	80352	broad.mit.edu	37	6	30043478	30043478	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIM15	89870	broad.mit.edu	37	6	30139765	30139765	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MUC21	394263	broad.mit.edu	37	6	30954371	30954371	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
BAT3	7917	broad.mit.edu	37	6	31609349	31609349	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MSH5	4439	broad.mit.edu	37	6	31710892	31710892	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
C2	717	broad.mit.edu	37	6	31913003	31913003	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ITPR3	3710	broad.mit.edu	37	6	33660624	33660624	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ITPR3	3710	broad.mit.edu	37	6	33661456	33661456	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
C6orf222	389384	broad.mit.edu	37	6	36298201	36298201	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PI16	221476	broad.mit.edu	37	6	36930731	36930731	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MDGA1	266727	broad.mit.edu	37	6	37620068	37620068	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38834581	38834581	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38881670	38881670	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38957823	38957823	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTK7	5754	broad.mit.edu	37	6	43114421	43114421	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPATS1	221409	broad.mit.edu	37	6	44310891	44310891	+	Nonsense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDYL	9425	broad.mit.edu	37	6	4943860	4943860	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51929769	51929769	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
RREB1	6239	broad.mit.edu	37	6	7231404	7231404	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
RIMS1	22999	broad.mit.edu	37	6	72957721	72957721	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNQ5	56479	broad.mit.edu	37	6	73900420	73900420	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CD109	135228	broad.mit.edu	37	6	74533302	74533302	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CNR1	1268	broad.mit.edu	37	6	88854856	88854856	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CASP8AP2	9994	broad.mit.edu	37	6	90576217	90576217	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100695124	100695124	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CUX1	1523	broad.mit.edu	37	7	101845024	101845024	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PMPCB	9512	broad.mit.edu	37	7	102940661	102940661	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
BCAP29	55973	broad.mit.edu	37	7	107253828	107253828	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
IFRD1	3475	broad.mit.edu	37	7	112096062	112096062	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
WASL	8976	broad.mit.edu	37	7	123332847	123332847	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SND1	27044	broad.mit.edu	37	7	127714730	127714730	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHCHD3	54927	broad.mit.edu	37	7	132754904	132754904	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTN	5764	broad.mit.edu	37	7	136936106	136936106	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF467	168544	broad.mit.edu	37	7	149463159	149463159	+	Silent	SNP	C	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SSPO	23145	broad.mit.edu	37	7	149505350	149505350	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PAXIP1	22976	broad.mit.edu	37	7	154738261	154738261	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
NOM1	64434	broad.mit.edu	37	7	156754932	156754932	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM20C	56975	broad.mit.edu	37	7	195701	195701	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
LFNG	3955	broad.mit.edu	37	7	2565989	2565989	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM188B	84182	broad.mit.edu	37	7	30876370	30876370	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
C7orf16	10842	broad.mit.edu	37	7	31746835	31746835	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
GLI3	2737	broad.mit.edu	37	7	42004188	42004188	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
POLD2	5425	broad.mit.edu	37	7	44157622	44157622	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
OGDH	4967	broad.mit.edu	37	7	44747299	44747299	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0415	9907	broad.mit.edu	37	7	4830468	4830468	+	Silent	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
USP42	84132	broad.mit.edu	37	7	6180583	6180583	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL28A1	340267	broad.mit.edu	37	7	7413118	7413118	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	77885556	77885556	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82585375	82585375	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPP1R9A	55607	broad.mit.edu	37	7	94919406	94919406	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TAC1	6863	broad.mit.edu	37	7	97362036	97362036	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF655	79027	broad.mit.edu	37	7	99170257	99170257	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF655	79027	broad.mit.edu	37	7	99170385	99170385	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF655	79027	broad.mit.edu	37	7	99170442	99170442	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF655	79027	broad.mit.edu	37	7	99170930	99170930	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10466192	10466192	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104987673	104987673	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
UTP23	84294	broad.mit.edu	37	8	117782565	117782565	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125052230	125052230	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
EIF2C2	27161	broad.mit.edu	37	8	141561493	141561493	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF623	9831	broad.mit.edu	37	8	144732816	144732816	+	Silent	SNP	G	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM83H	286077	broad.mit.edu	37	8	144808291	144808291	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
BIN3	55909	broad.mit.edu	37	8	22487503	22487503	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF395	55893	broad.mit.edu	37	8	28206244	28206244	+	Missense_Mutation	SNP	G	C	C	rs12545851		TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
EXTL3	2137	broad.mit.edu	37	8	28574875	28574875	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
IDO2	169355	broad.mit.edu	37	8	39806667	39806667	+	Splice_Site	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHRNB3	1142	broad.mit.edu	37	8	42585842	42585842	+	Missense_Mutation	SNP	G	A	A	rs75170626	byFrequency;by1000genomes	TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
POTEA	340441	broad.mit.edu	37	8	43211963	43211963	+	Silent	SNP	C	G	G	rs79540135	byFrequency;by1000genomes	TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0146	23514	broad.mit.edu	37	8	48641538	48641538	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0146	23514	broad.mit.edu	37	8	48641544	48641544	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARFGEF1	10565	broad.mit.edu	37	8	68163633	68163633	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLCO5A1	81796	broad.mit.edu	37	8	70650368	70650368	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
GDAP1	54332	broad.mit.edu	37	8	75262801	75262801	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA1429	25962	broad.mit.edu	37	8	95541352	95541352	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNS2	3788	broad.mit.edu	37	8	99440459	99440459	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNS2	3788	broad.mit.edu	37	8	99440510	99440510	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101825366	101825366	+	Nonsense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF462	58499	broad.mit.edu	37	9	109687655	109687655	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACTL7A	10881	broad.mit.edu	37	9	111625697	111625697	+	Silent	SNP	G	C	C	rs114738906	by1000genomes	TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CTNNAL1	8727	broad.mit.edu	37	9	111741738	111741738	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113231341	113231341	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113312147	113312147	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
BSPRY	54836	broad.mit.edu	37	9	116131969	116131969	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ORM2	5005	broad.mit.edu	37	9	117093087	117093087	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SCAI	286205	broad.mit.edu	37	9	127764247	127764247	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
GAPVD1	26130	broad.mit.edu	37	9	128111713	128111713	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ST6GALNAC6	30815	broad.mit.edu	37	9	130652994	130652994	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
NAIF1	203245	broad.mit.edu	37	9	130829327	130829327	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
LCN2	3934	broad.mit.edu	37	9	130914288	130914288	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPTAN1	6709	broad.mit.edu	37	9	131395126	131395126	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZER1	10444	broad.mit.edu	37	9	131517773	131517773	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
DOLK	22845	broad.mit.edu	37	9	131709436	131709436	+	Silent	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
NUP188	23511	broad.mit.edu	37	9	131745618	131745618	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ASS1	445	broad.mit.edu	37	9	133327632	133327632	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
LAMC3	10319	broad.mit.edu	37	9	133907468	133907468	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
C9orf96	169436	broad.mit.edu	37	9	136266896	136266896	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MRPS2	51116	broad.mit.edu	37	9	138395832	138395832	+	Silent	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNT1	57582	broad.mit.edu	37	9	138669288	138669288	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRAF2	7186	broad.mit.edu	37	9	139802612	139802612	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
NPDC1	56654	broad.mit.edu	37	9	139937474	139937474	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
BNC2	54796	broad.mit.edu	37	9	16435866	16435866	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TOPORS	10210	broad.mit.edu	37	9	32542586	32542586	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TPM2	7169	broad.mit.edu	37	9	35689748	35689748	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
CREB3	10488	broad.mit.edu	37	9	35736618	35736618	+	Silent	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
AGTPBP1	23287	broad.mit.edu	37	9	88190360	88190360	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTPDC1	138639	broad.mit.edu	37	9	96847533	96847533	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTCH1	5727	broad.mit.edu	37	9	98232132	98232132	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
C9orf102	375748	broad.mit.edu	37	9	98691087	98691087	+	Silent	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
DRP2	1821	broad.mit.edu	37	X	100497935	100497935	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TAF7L	54457	broad.mit.edu	37	X	100537423	100537423	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
GLRA4	441509	broad.mit.edu	37	X	102974114	102974114	+	Silent	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
RGAG1	57529	broad.mit.edu	37	X	109695177	109695177	+	Silent	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
HTR2C	3358	broad.mit.edu	37	X	114141360	114141360	+	Silent	SNP	C	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
LAMP2	3920	broad.mit.edu	37	X	119581866	119581866	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
BCORL1	63035	broad.mit.edu	37	X	129185834	129185834	+	Splice_Site	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZIC3	7547	broad.mit.edu	37	X	136649816	136649816	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAGEA10	4109	broad.mit.edu	37	X	151303655	151303655	+	Silent	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLXNB3	5365	broad.mit.edu	37	X	153040417	153040417	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
FLNA	2316	broad.mit.edu	37	X	153577785	153577785	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPL10	6134	broad.mit.edu	37	X	153629109	153629109	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
F8	2157	broad.mit.edu	37	X	154157864	154157864	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
PHKA2	5256	broad.mit.edu	37	X	18926150	18926150	+	Silent	SNP	G	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARSE	415	broad.mit.edu	37	X	2876407	2876407	+	Silent	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32429880	32429880	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
BCOR	54880	broad.mit.edu	37	X	39933287	39933287	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
MED14	9282	broad.mit.edu	37	X	40568682	40568682	+	Silent	SNP	C	G	G			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
USP9X	8239	broad.mit.edu	37	X	41077663	41077663	+	Missense_Mutation	SNP	A	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TBC1D25	4943	broad.mit.edu	37	X	48418785	48418785	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
HUWE1	10075	broad.mit.edu	37	X	53587226	53587226	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
ITIH5L	347365	broad.mit.edu	37	X	54781511	54781511	+	Silent	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRO	7216	broad.mit.edu	37	X	54956580	54956580	+	Silent	SNP	T	C	C			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
DLG3	1741	broad.mit.edu	37	X	69719849	69719849	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
HDX	139324	broad.mit.edu	37	X	83723964	83723964	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A0YX-01	TCGA-BT-A0YX-01									Somatic	Phase_I	Capture				Illumina GAIIx
