Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
HIF1AN	55662	broad.mit.edu	37	10	102304781	102304781	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
GBF1	8729	broad.mit.edu	37	10	104119055	104119055	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
XPNPEP1	7511	broad.mit.edu	37	10	111640657	111640657	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZDHHC6	64429	broad.mit.edu	37	10	114205095	114205095	+	Missense_Mutation	SNP	A	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TDRD1	56165	broad.mit.edu	37	10	115947866	115947866	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABLIM1	3983	broad.mit.edu	37	10	116361688	116361688	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZRANB1	54764	broad.mit.edu	37	10	126631257	126631257	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
DPYSL4	10570	broad.mit.edu	37	10	134013904	134013904	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MRC1	4360	broad.mit.edu	37	10	17949694	17949694	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SVIL	6840	broad.mit.edu	37	10	29820209	29820209	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PITRM1	10531	broad.mit.edu	37	10	3205933	3205933	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PITRM1	10531	broad.mit.edu	37	10	3205948	3205948	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37430971	37430971	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
BMS1	9790	broad.mit.edu	37	10	43297618	43297618	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAPK8	5599	broad.mit.edu	37	10	49632597	49632597	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADAMTS14	140766	broad.mit.edu	37	10	72489913	72489913	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPP3CB	5532	broad.mit.edu	37	10	75214185	75214185	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SFTPD	6441	broad.mit.edu	37	10	81701777	81701777	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MMP8	4317	broad.mit.edu	37	11	102584518	102584518	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
GUCY1A2	2977	broad.mit.edu	37	11	106849346	106849346	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
EIF4G2	1982	broad.mit.edu	37	11	10820632	10820632	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
EIF4G2	1982	broad.mit.edu	37	11	10820954	10820954	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
EIF4G2	1982	broad.mit.edu	37	11	10821742	10821742	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
EIF4G2	1982	broad.mit.edu	37	11	10825066	10825066	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTC12	54970	broad.mit.edu	37	11	113210177	113210177	+	Silent	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CLDN25	644672	broad.mit.edu	37	11	113650985	113650985	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CLDN25	644672	broad.mit.edu	37	11	113651015	113651015	+	Silent	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
APOA5	116519	broad.mit.edu	37	11	116661323	116661323	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
UBE4A	9354	broad.mit.edu	37	11	118267074	118267074	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
UBE4A	9354	broad.mit.edu	37	11	118267125	118267125	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MFRP	83552	broad.mit.edu	37	11	119212379	119212379	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR10G9	219870	broad.mit.edu	37	11	123893845	123893845	+	Silent	SNP	C	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR10G7	390265	broad.mit.edu	37	11	123909583	123909583	+	Silent	SNP	G	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
VWA5A	4013	broad.mit.edu	37	11	124012328	124012328	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR8D1	283159	broad.mit.edu	37	11	124179832	124179832	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACAD8	27034	broad.mit.edu	37	11	134131719	134131719	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
GLB1L2	89944	broad.mit.edu	37	11	134244148	134244148	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLEKHA7	144100	broad.mit.edu	37	11	16812671	16812671	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIF18A	81930	broad.mit.edu	37	11	28045346	28045346	+	Missense_Mutation	SNP	T	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CAT	847	broad.mit.edu	37	11	34470812	34470812	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR51D1	390038	broad.mit.edu	37	11	4661760	4661760	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PSMC3	5702	broad.mit.edu	37	11	47446777	47446777	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTPRJ	5795	broad.mit.edu	37	11	48134415	48134415	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
FOLH1	2346	broad.mit.edu	37	11	49229913	49229913	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR5M10	390167	broad.mit.edu	37	11	56344784	56344784	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMX2	51075	broad.mit.edu	37	11	57507579	57507579	+	Silent	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR9I1	219954	broad.mit.edu	37	11	57886441	57886441	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR1S2	219958	broad.mit.edu	37	11	57970695	57970695	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC86	79080	broad.mit.edu	37	11	60617418	60617418	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
FADS1	3992	broad.mit.edu	37	11	61580081	61580081	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
AHNAK	79026	broad.mit.edu	37	11	62296060	62296060	+	Silent	SNP	C	A	A	rs601430		TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
C11orf48	79081	broad.mit.edu	37	11	62437250	62437250	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
NXF1	10482	broad.mit.edu	37	11	62569095	62569095	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RTN3	10313	broad.mit.edu	37	11	63487538	63487538	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNK4	50801	broad.mit.edu	37	11	64067068	64067068	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATG2A	23130	broad.mit.edu	37	11	64669472	64669472	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
C11orf85	283129	broad.mit.edu	37	11	64708057	64708057	+	Missense_Mutation	SNP	A	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
FIBP	9158	broad.mit.edu	37	11	65651873	65651873	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RBM4B	83759	broad.mit.edu	37	11	66436149	66436149	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ALDH3B2	222	broad.mit.edu	37	11	67431965	67431965	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CPT1A	1374	broad.mit.edu	37	11	68525189	68525189	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
IGHMBP2	3508	broad.mit.edu	37	11	68703931	68703931	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCND1	595	broad.mit.edu	37	11	69456203	69456203	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
NUMA1	4926	broad.mit.edu	37	11	71715792	71715792	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
P2RY2	5029	broad.mit.edu	37	11	72945966	72945966	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
P2RY2	5029	broad.mit.edu	37	11	72945972	72945972	+	Silent	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PAAF1	80227	broad.mit.edu	37	11	73627688	73627688	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDDC1	347862	broad.mit.edu	37	11	771391	771391	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
NLRP10	338322	broad.mit.edu	37	11	7982182	7982182	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYTL2	54843	broad.mit.edu	37	11	85445395	85445395	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMEM41B	440026	broad.mit.edu	37	11	9304976	9304976	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMEM41B	440026	broad.mit.edu	37	11	9308127	9308127	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
HEPHL1	341208	broad.mit.edu	37	11	93778980	93778980	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
HEPHL1	341208	broad.mit.edu	37	11	93844129	93844129	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
IPO7	10527	broad.mit.edu	37	11	9450660	9450660	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
UTP20	27340	broad.mit.edu	37	12	101767492	101767492	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TXNRD1	7296	broad.mit.edu	37	12	104725378	104725378	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
APPL2	55198	broad.mit.edu	37	12	105600843	105600843	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
APPL2	55198	broad.mit.edu	37	12	105601808	105601808	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TCP11L2	255394	broad.mit.edu	37	12	106740129	106740129	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
POLR3B	55703	broad.mit.edu	37	12	106820987	106820987	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RIC8B	55188	broad.mit.edu	37	12	107208957	107208957	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TAS2R8	50836	broad.mit.edu	37	12	10959334	10959334	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACAD10	80724	broad.mit.edu	37	12	112194215	112194215	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
NAA25	80018	broad.mit.edu	37	12	112477060	112477060	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
C12orf51	283450	broad.mit.edu	37	12	112609068	112609068	+	Splice_Site	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TAS2R42	353164	broad.mit.edu	37	12	11339184	11339184	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MED13L	23389	broad.mit.edu	37	12	116420239	116420239	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CIT	11113	broad.mit.edu	37	12	120241075	120241075	+	Silent	SNP	C	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
WDR66	144406	broad.mit.edu	37	12	122398579	122398579	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
GTF2H3	2967	broad.mit.edu	37	12	124132646	124132646	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
HEBP1	50865	broad.mit.edu	37	12	13142262	13142262	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ULK1	8408	broad.mit.edu	37	12	132380333	132380333	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANKLE2	23141	broad.mit.edu	37	12	133327431	133327431	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLCO1B3	28234	broad.mit.edu	37	12	21028360	21028360	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ERGIC2	51290	broad.mit.edu	37	12	29498381	29498381	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC6A13	6540	broad.mit.edu	37	12	331745	331745	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIF21A	55605	broad.mit.edu	37	12	39726896	39726896	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNA1	3736	broad.mit.edu	37	12	5021802	5021802	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
LETMD1	25875	broad.mit.edu	37	12	51449628	51449628	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRR13	54458	broad.mit.edu	37	12	53839821	53839821	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
NPFF	8620	broad.mit.edu	37	12	53900619	53900619	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
HOXC4	3221	broad.mit.edu	37	12	54448006	54448006	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
FRS2	10818	broad.mit.edu	37	12	69964277	69964277	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CD163	9332	broad.mit.edu	37	12	7647847	7647847	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
A2M	2	broad.mit.edu	37	12	9229475	9229475	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLXNC1	10154	broad.mit.edu	37	12	94691157	94691157	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
LATS2	26524	broad.mit.edu	37	13	21562346	21562346	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CENPJ	55835	broad.mit.edu	37	13	25457361	25457361	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRPC4	7223	broad.mit.edu	37	13	38225536	38225536	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ELF1	1997	broad.mit.edu	37	13	41507794	41507794	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAJC15	29103	broad.mit.edu	37	13	43643082	43643082	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TSC22D1	8848	broad.mit.edu	37	13	45147767	45147767	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZC3H13	23091	broad.mit.edu	37	13	46559516	46559516	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CPB2	1361	broad.mit.edu	37	13	46656653	46656653	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
DHRS12	79758	broad.mit.edu	37	13	52373793	52373793	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CKAP2	26586	broad.mit.edu	37	13	53036693	53036693	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDH17	27253	broad.mit.edu	37	13	58299161	58299161	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
DIAPH3	81624	broad.mit.edu	37	13	60348372	60348372	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TBC1D4	9882	broad.mit.edu	37	13	75869130	75869130	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RNF113B	140432	broad.mit.edu	37	13	98829136	98829136	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR4E2	26686	broad.mit.edu	37	14	22133602	22133602	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MMP14	4323	broad.mit.edu	37	14	23312531	23312531	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRP10	26020	broad.mit.edu	37	14	23346713	23346713	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PSME1	5720	broad.mit.edu	37	14	24607692	24607692	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGAP5	394	broad.mit.edu	37	14	32560018	32560018	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGAP5	394	broad.mit.edu	37	14	32560228	32560228	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42355925	42355925	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
OTX2	5015	broad.mit.edu	37	14	57270957	57270957	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64519306	64519306	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
C14orf43	91748	broad.mit.edu	37	14	74196502	74196502	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
C14orf43	91748	broad.mit.edu	37	14	74196685	74196685	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
C14orf43	91748	broad.mit.edu	37	14	74205546	74205546	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPS6KA5	9252	broad.mit.edu	37	14	91372604	91372604	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
UBR7	55148	broad.mit.edu	37	14	93693381	93693381	+	Nonstop_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
DDX24	57062	broad.mit.edu	37	14	94526925	94526925	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SERPINA9	327657	broad.mit.edu	37	14	94929550	94929550	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SERPINA12	145264	broad.mit.edu	37	14	94956013	94956013	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
GJD2	57369	broad.mit.edu	37	15	35044759	35044759	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MEIS2	4212	broad.mit.edu	37	15	37390256	37390256	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAP1A	4130	broad.mit.edu	37	15	43817277	43817277	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CASC4	113201	broad.mit.edu	37	15	44624216	44624216	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
DUOX2	50506	broad.mit.edu	37	15	45394079	45394079	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPL4	6124	broad.mit.edu	37	15	66793735	66793735	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
LCTL	197021	broad.mit.edu	37	15	66853624	66853624	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANPEP	290	broad.mit.edu	37	15	90349355	90349355	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
UNC45A	55898	broad.mit.edu	37	15	91496469	91496469	+	Missense_Mutation	SNP	C	T	T	rs8041417		TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TXNDC11	51061	broad.mit.edu	37	16	11792004	11792004	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
UNKL	64718	broad.mit.edu	37	16	1416391	1416391	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAPK8IP3	23162	broad.mit.edu	37	16	1817918	1817918	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	21063188	21063188	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	21086798	21086798	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	21132082	21132082	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0556	23247	broad.mit.edu	37	16	27640096	27640096	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SRCAP	10847	broad.mit.edu	37	16	30721411	30721411	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBXL19	54620	broad.mit.edu	37	16	30941563	30941563	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SETD1A	9739	broad.mit.edu	37	16	30991419	30991419	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF263	10127	broad.mit.edu	37	16	3339480	3339480	+	Missense_Mutation	SNP	G	A	A	rs79713839		TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
N4BP1	9683	broad.mit.edu	37	16	48595890	48595890	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
NAGPA	51172	broad.mit.edu	37	16	5077281	5077281	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDP2	57546	broad.mit.edu	37	16	66919264	66919264	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
FHOD1	29109	broad.mit.edu	37	16	67271177	67271177	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP6V0D1	9114	broad.mit.edu	37	16	67514862	67514862	+	Missense_Mutation	SNP	T	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP6V0D1	9114	broad.mit.edu	37	16	67514906	67514906	+	Silent	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
HAS3	3038	broad.mit.edu	37	16	69143494	69143494	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
DDX19A	55308	broad.mit.edu	37	16	70400696	70400696	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
FOXL1	2300	broad.mit.edu	37	16	86612413	86612413	+	Silent	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
KLHDC4	54758	broad.mit.edu	37	16	87744970	87744970	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
FANCA	2175	broad.mit.edu	37	16	89862344	89862344	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TCF25	22980	broad.mit.edu	37	16	89940210	89940210	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10310054	10310054	+	Missense_Mutation	SNP	A	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10399384	10399384	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11656266	11656266	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RICH2	9912	broad.mit.edu	37	17	12823090	12823090	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SCARF1	8578	broad.mit.edu	37	17	1548932	1548932	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF287	57336	broad.mit.edu	37	17	16466491	16466491	+	Silent	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
NOS2	4843	broad.mit.edu	37	17	26101427	26101427	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0100	9703	broad.mit.edu	37	17	26945944	26945944	+	Silent	SNP	C	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PROCA1	147011	broad.mit.edu	37	17	27030605	27030605	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM101B	359845	broad.mit.edu	37	17	293277	293277	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR3A1	4994	broad.mit.edu	37	17	3195373	3195373	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAD51L3	5892	broad.mit.edu	37	17	33428002	33428002	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
GRB7	2886	broad.mit.edu	37	17	37901554	37901554	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PSMD3	5709	broad.mit.edu	37	17	38140722	38140722	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDC6	990	broad.mit.edu	37	17	38447912	38447912	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
KAT2A	2648	broad.mit.edu	37	17	40265686	40265686	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTRF	284119	broad.mit.edu	37	17	40556890	40556890	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
DHX8	1659	broad.mit.edu	37	17	41599484	41599484	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
FMNL1	752	broad.mit.edu	37	17	43323891	43323891	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PNPO	55163	broad.mit.edu	37	17	46023710	46023710	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
UBE2Z	65264	broad.mit.edu	37	17	47004453	47004453	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCC3	8714	broad.mit.edu	37	17	48745049	48745049	+	Silent	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CAMTA2	23125	broad.mit.edu	37	17	4877755	4877755	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MBTD1	54799	broad.mit.edu	37	17	49280217	49280217	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIM37	4591	broad.mit.edu	37	17	57089713	57089713	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
KPNA2	3838	broad.mit.edu	37	17	66042657	66042657	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
KPNA2	3838	broad.mit.edu	37	17	66042674	66042674	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNJ16	3773	broad.mit.edu	37	17	68128891	68128891	+	Silent	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNJ16	3773	broad.mit.edu	37	17	68129403	68129403	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
NUP85	79902	broad.mit.edu	37	17	73205991	73205991	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
LLGL2	3993	broad.mit.edu	37	17	73554290	73554290	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RECQL5	9400	broad.mit.edu	37	17	73623508	73623508	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RECQL5	9400	broad.mit.edu	37	17	73623520	73623520	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RECQL5	9400	broad.mit.edu	37	17	73624402	73624402	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RECQL5	9400	broad.mit.edu	37	17	73624837	73624837	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RECQL5	9400	broad.mit.edu	37	17	73625129	73625129	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
GALR2	8811	broad.mit.edu	37	17	74071212	74071212	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MGAT5B	146664	broad.mit.edu	37	17	74901357	74901357	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7578419	7578419	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7578493	7578493	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
AZI1	22994	broad.mit.edu	37	17	79165000	79165000	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
C17orf62	79415	broad.mit.edu	37	17	80401915	80401915	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
FN3K	64122	broad.mit.edu	37	17	80708353	80708353	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
EMILIN2	84034	broad.mit.edu	37	18	2892402	2892402	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MOCOS	55034	broad.mit.edu	37	18	33780103	33780103	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	7024444	7024444	+	Silent	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
C18orf22	79863	broad.mit.edu	37	18	77794586	77794586	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TYK2	7297	broad.mit.edu	37	19	10478793	10478793	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
DOCK6	57572	broad.mit.edu	37	19	11343960	11343960	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC130	81576	broad.mit.edu	37	19	13873412	13873412	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPS15	6209	broad.mit.edu	37	19	1440120	1440120	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
AKAP8L	26993	broad.mit.edu	37	19	15510131	15510131	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR10H1	26539	broad.mit.edu	37	19	15918161	15918161	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
NWD1	284434	broad.mit.edu	37	19	16860125	16860125	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYO9B	4650	broad.mit.edu	37	19	17311468	17311468	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
COMP	1311	broad.mit.edu	37	19	18896563	18896563	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
DOT1L	84444	broad.mit.edu	37	19	2210632	2210632	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
DOT1L	84444	broad.mit.edu	37	19	2210638	2210638	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
DOT1L	84444	broad.mit.edu	37	19	2210754	2210754	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
DOT1L	84444	broad.mit.edu	37	19	2213597	2213597	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
DOT1L	84444	broad.mit.edu	37	19	2213856	2213856	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
DOT1L	84444	broad.mit.edu	37	19	2216484	2216484	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
DOT1L	84444	broad.mit.edu	37	19	2216699	2216699	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF681	148213	broad.mit.edu	37	19	23926476	23926476	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF681	148213	broad.mit.edu	37	19	23926861	23926861	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF681	148213	broad.mit.edu	37	19	23927978	23927978	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	31039228	31039228	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANKRD27	84079	broad.mit.edu	37	19	33089074	33089074	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MLL4	9757	broad.mit.edu	37	19	36218436	36218436	+	Silent	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
NPHS1	4868	broad.mit.edu	37	19	36322010	36322010	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF567	163081	broad.mit.edu	37	19	37211048	37211048	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38976369	38976369	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACTN4	81	broad.mit.edu	37	19	39219769	39219769	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RINL	126432	broad.mit.edu	37	19	39361468	39361468	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RINL	126432	broad.mit.edu	37	19	39361736	39361736	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBXO27	126433	broad.mit.edu	37	19	39521863	39521863	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZBTB7A	51341	broad.mit.edu	37	19	4048050	4048050	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRX	57716	broad.mit.edu	37	19	40902869	40902869	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADCK4	79934	broad.mit.edu	37	19	41209631	41209631	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMEM145	284339	broad.mit.edu	37	19	42819374	42819374	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
C19orf61	56006	broad.mit.edu	37	19	44235749	44235749	+	Nonstop_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
C19orf61	56006	broad.mit.edu	37	19	44235808	44235808	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYMPK	8189	broad.mit.edu	37	19	46330779	46330779	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRKD2	25865	broad.mit.edu	37	19	47207801	47207801	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
GRLF1	2909	broad.mit.edu	37	19	47425167	47425167	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
DHX34	9704	broad.mit.edu	37	19	47856690	47856690	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
KDELR1	10945	broad.mit.edu	37	19	48892915	48892915	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM83E	54854	broad.mit.edu	37	19	49113235	49113235	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
BAX	581	broad.mit.edu	37	19	49458852	49458852	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
BAX	581	broad.mit.edu	37	19	49464129	49464129	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
BAX	581	broad.mit.edu	37	19	49464256	49464256	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
BAX	581	broad.mit.edu	37	19	49464317	49464317	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RUVBL2	10856	broad.mit.edu	37	19	49510338	49510338	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MED25	81857	broad.mit.edu	37	19	50334032	50334032	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPP2R1A	5518	broad.mit.edu	37	19	52724377	52724377	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF808	388558	broad.mit.edu	37	19	53057257	53057257	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
BIRC8	112401	broad.mit.edu	37	19	53793212	53793212	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIR2DL3	3804	broad.mit.edu	37	19	55263168	55263168	+	Silent	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
NLRP7	199713	broad.mit.edu	37	19	55441934	55441934	+	Missense_Mutation	SNP	T	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPP1R12C	54776	broad.mit.edu	37	19	55624149	55624149	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
U2AF2	11338	broad.mit.edu	37	19	56180822	56180822	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF671	79891	broad.mit.edu	37	19	58233027	58233027	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF544	27300	broad.mit.edu	37	19	58772988	58772988	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIM28	10155	broad.mit.edu	37	19	59060782	59060782	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA1543	57662	broad.mit.edu	37	19	7676406	7676406	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA1543	57662	broad.mit.edu	37	19	7676584	7676584	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9075858	9075858	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
VANGL1	81839	broad.mit.edu	37	1	116206759	116206759	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TAS1R3	83756	broad.mit.edu	37	1	1268732	1268732	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRDM2	7799	broad.mit.edu	37	1	14108712	14108712	+	Silent	SNP	C	A	A	rs61743100	byFrequency;by1000genomes	TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MTMR11	10903	broad.mit.edu	37	1	149905798	149905798	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
OTUD7B	56957	broad.mit.edu	37	1	149916075	149916075	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANP32E	81611	broad.mit.edu	37	1	150193030	150193030	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
C1orf51	148523	broad.mit.edu	37	1	150259343	150259343	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
THEM4	117145	broad.mit.edu	37	1	151861806	151861806	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
HRNR	388697	broad.mit.edu	37	1	152192570	152192570	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
DENND4B	9909	broad.mit.edu	37	1	153906268	153906268	+	Silent	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
UBAP2L	9898	broad.mit.edu	37	1	154223614	154223614	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ASH1L	55870	broad.mit.edu	37	1	155319163	155319163	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0907	22889	broad.mit.edu	37	1	155896471	155896471	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MEF2D	4209	broad.mit.edu	37	1	156446809	156446809	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CD1A	909	broad.mit.edu	37	1	158226807	158226807	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
COPA	1314	broad.mit.edu	37	1	160282929	160282929	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
FCGR3B	2215	broad.mit.edu	37	1	161600882	161600882	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPATA21	374955	broad.mit.edu	37	1	16735685	16735685	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZBTB37	84614	broad.mit.edu	37	1	173839952	173839952	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZBTB37	84614	broad.mit.edu	37	1	173839957	173839957	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PADI2	11240	broad.mit.edu	37	1	17413062	17413062	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
XPR1	9213	broad.mit.edu	37	1	180775291	180775291	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PQLC2	54896	broad.mit.edu	37	1	19653820	19653820	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ASPM	259266	broad.mit.edu	37	1	197112229	197112229	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAB7L1	8934	broad.mit.edu	37	1	205741642	205741642	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
EIF4G3	8672	broad.mit.edu	37	1	21307591	21307591	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216243607	216243607	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CELA3B	23436	broad.mit.edu	37	1	22307617	22307617	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TLR5	7100	broad.mit.edu	37	1	223286345	223286345	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACTA1	58	broad.mit.edu	37	1	229568092	229568092	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ERO1LB	56605	broad.mit.edu	37	1	236390014	236390014	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF695	57116	broad.mit.edu	37	1	247150452	247150452	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARID1A	8289	broad.mit.edu	37	1	27087921	27087921	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
WASF2	10163	broad.mit.edu	37	1	27744801	27744801	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
OPRD1	4985	broad.mit.edu	37	1	29185686	29185686	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC27	148870	broad.mit.edu	37	1	3670737	3670737	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39797292	39797292	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39800811	39800811	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39827347	39827347	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0754	643314	broad.mit.edu	37	1	39876975	39876975	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIT1	54802	broad.mit.edu	37	1	40310268	40310268	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC30	728621	broad.mit.edu	37	1	43011099	43011099	+	Missense_Mutation	SNP	G	C	C	rs12746482		TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
AJAP1	55966	broad.mit.edu	37	1	4772146	4772146	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTC39A	22996	broad.mit.edu	37	1	51778567	51778567	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM73A	374986	broad.mit.edu	37	1	78249010	78249010	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82456581	82456581	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CLCA1	1179	broad.mit.edu	37	1	86954697	86954697	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CLCA1	1179	broad.mit.edu	37	1	86961284	86961284	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
BRDT	676	broad.mit.edu	37	1	92446495	92446495	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCSK2	5126	broad.mit.edu	37	20	17240965	17240965	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CRNKL1	51340	broad.mit.edu	37	20	20031155	20031155	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
GZF1	64412	broad.mit.edu	37	20	23350821	23350821	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
HM13	81502	broad.mit.edu	37	20	30137129	30137129	+	Silent	SNP	C	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC4A11	83959	broad.mit.edu	37	20	3210005	3210005	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF341	84905	broad.mit.edu	37	20	32379155	32379155	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TP53INP2	58476	broad.mit.edu	37	20	33296631	33296631	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRPC4AP	26133	broad.mit.edu	37	20	33632447	33632447	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PHF20	51230	broad.mit.edu	37	20	34435272	34435272	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPB41L1	2036	broad.mit.edu	37	20	34797578	34797578	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
LBP	3929	broad.mit.edu	37	20	36982714	36982714	+	Silent	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC32A1	140679	broad.mit.edu	37	20	37357141	37357141	+	Silent	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
L3MBTL	26013	broad.mit.edu	37	20	42164893	42164893	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
HNF4A	3172	broad.mit.edu	37	20	43043252	43043252	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SULF2	55959	broad.mit.edu	37	20	46307544	46307544	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CSNK2A1	1457	broad.mit.edu	37	20	469330	469330	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC23A2	9962	broad.mit.edu	37	20	4848512	4848512	+	Silent	SNP	G	A	A	rs72552221	byFrequency	TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57769685	57769685	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDH26	60437	broad.mit.edu	37	20	58558027	58558027	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRRN4	164312	broad.mit.edu	37	20	6022478	6022478	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
USP25	29761	broad.mit.edu	37	21	17236685	17236685	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
GRIK1	2897	broad.mit.edu	37	21	31023467	31023467	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
KRTAP24-1	643803	broad.mit.edu	37	21	31655209	31655209	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
KRTAP19-4	337971	broad.mit.edu	37	21	31869328	31869328	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TIAM1	7074	broad.mit.edu	37	21	32519265	32519265	+	Silent	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYNJ1	8867	broad.mit.edu	37	21	34038745	34038745	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
DOPEY2	9980	broad.mit.edu	37	21	37595610	37595610	+	Silent	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRRC3	81543	broad.mit.edu	37	21	45876864	45876864	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCBP3	54039	broad.mit.edu	37	21	47359997	47359997	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CABIN1	23523	broad.mit.edu	37	22	24468354	24468354	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RFPL1	5988	broad.mit.edu	37	22	29835056	29835056	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
THOC5	8563	broad.mit.edu	37	22	29921847	29921847	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
OSBP2	23762	broad.mit.edu	37	22	31266642	31266642	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
C22orf28	51493	broad.mit.edu	37	22	32788307	32788307	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TIMP3	7078	broad.mit.edu	37	22	33255169	33255169	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYH9	4627	broad.mit.edu	37	22	36689431	36689431	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
POLR2F	5435	broad.mit.edu	37	22	38352817	38352817	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RANGAP1	5905	broad.mit.edu	37	22	41647082	41647082	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
AFF3	3899	broad.mit.edu	37	2	100199373	100199373	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
GRHL1	29841	broad.mit.edu	37	2	10126392	10126392	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MERTK	10461	broad.mit.edu	37	2	112740456	112740456	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MERTK	10461	broad.mit.edu	37	2	112740460	112740460	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MERTK	10461	broad.mit.edu	37	2	112740501	112740501	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MERTK	10461	broad.mit.edu	37	2	112740537	112740537	+	Silent	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ROCK2	9475	broad.mit.edu	37	2	11427791	11427791	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
IWS1	55677	broad.mit.edu	37	2	128260414	128260414	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
UGGT1	56886	broad.mit.edu	37	2	128918082	128918082	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAB6C	84084	broad.mit.edu	37	2	130738132	130738132	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133543084	133543084	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZEB2	9839	broad.mit.edu	37	2	145161507	145161507	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152496556	152496556	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	165947272	165947272	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTC21B	79809	broad.mit.edu	37	2	166747011	166747011	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
KBTBD10	10324	broad.mit.edu	37	2	170359659	170359659	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
C2orf77	129881	broad.mit.edu	37	2	170506887	170506887	+	Silent	SNP	T	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179402447	179402447	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179481355	179481355	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDE1A	5136	broad.mit.edu	37	2	183094834	183094834	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ITGAV	3685	broad.mit.edu	37	2	187455093	187455093	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ITGAV	3685	broad.mit.edu	37	2	187516805	187516805	+	Silent	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RFTN2	130132	broad.mit.edu	37	2	198498569	198498569	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
AOX1	316	broad.mit.edu	37	2	201468754	201468754	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
AOX1	316	broad.mit.edu	37	2	201526320	201526320	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CLK1	1195	broad.mit.edu	37	2	201721702	201721702	+	Missense_Mutation	SNP	T	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
BMPR2	659	broad.mit.edu	37	2	203420557	203420557	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PIKFYVE	200576	broad.mit.edu	37	2	209218754	209218754	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANKZF1	55139	broad.mit.edu	37	2	220094995	220094995	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL4A4	1286	broad.mit.edu	37	2	227924258	227924258	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SP100	6672	broad.mit.edu	37	2	231407626	231407626	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
UGT1A5	54579	broad.mit.edu	37	2	234622344	234622344	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
HJURP	55355	broad.mit.edu	37	2	234749538	234749538	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PER2	8864	broad.mit.edu	37	2	239184478	239184478	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATAD2B	54454	broad.mit.edu	37	2	24011422	24011422	+	Silent	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANKMY1	51281	broad.mit.edu	37	2	241468765	241468765	+	Silent	SNP	G	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CAPN13	92291	broad.mit.edu	37	2	30976031	30976031	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33412110	33412110	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
VIT	5212	broad.mit.edu	37	2	37000939	37000939	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
HEATR5B	54497	broad.mit.edu	37	2	37283642	37283642	+	Silent	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
HEATR5B	54497	broad.mit.edu	37	2	37284473	37284473	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SOS1	6654	broad.mit.edu	37	2	39234309	39234309	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
HAAO	23498	broad.mit.edu	37	2	42996988	42996988	+	Silent	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MSH2	4436	broad.mit.edu	37	2	47693913	47693913	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
FOXN2	3344	broad.mit.edu	37	2	48573510	48573510	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ERLEC1	27248	broad.mit.edu	37	2	54035547	54035547	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBXO48	554251	broad.mit.edu	37	2	68691345	68691345	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
EXOC6B	23233	broad.mit.edu	37	2	72968519	72968519	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
EGR4	1961	broad.mit.edu	37	2	73519488	73519488	+	Silent	SNP	G	C	C	rs115948271	by1000genomes	TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
EIF2AK3	9451	broad.mit.edu	37	2	88874949	88874949	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA1310	55683	broad.mit.edu	37	2	97276603	97276603	+	Silent	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CNNM3	26505	broad.mit.edu	37	2	97483169	97483169	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108203941	108203941	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMPRSS7	344805	broad.mit.edu	37	3	111769523	111769523	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CD200R1L	344807	broad.mit.edu	37	3	112546253	112546253	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CD200R1L	344807	broad.mit.edu	37	3	112546398	112546398	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC52	152185	broad.mit.edu	37	3	113172624	113172624	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP6V1A	523	broad.mit.edu	37	3	113528247	113528247	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
POLQ	10721	broad.mit.edu	37	3	121206874	121206874	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
GOLGB1	2804	broad.mit.edu	37	3	121411306	121411306	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ILDR1	286676	broad.mit.edu	37	3	121725918	121725918	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RUVBL1	8607	broad.mit.edu	37	3	127831851	127831851	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MRPL3	11222	broad.mit.edu	37	3	131217033	131217033	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TF	7018	broad.mit.edu	37	3	133494392	133494392	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATR	545	broad.mit.edu	37	3	142188970	142188970	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZIC1	7545	broad.mit.edu	37	3	147131226	147131226	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
IGSF10	285313	broad.mit.edu	37	3	151163978	151163978	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
IGSF10	285313	broad.mit.edu	37	3	151164002	151164002	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZFYVE20	64145	broad.mit.edu	37	3	15124116	15124116	+	Splice_Site	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
EAF1	85403	broad.mit.edu	37	3	15475961	15475961	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLCH1	23007	broad.mit.edu	37	3	155232674	155232674	+	Splice_Site	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
GFM1	85476	broad.mit.edu	37	3	158383171	158383171	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
GFM1	85476	broad.mit.edu	37	3	158384153	158384153	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
WDR49	151790	broad.mit.edu	37	3	167245664	167245664	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDCD10	11235	broad.mit.edu	37	3	167414891	167414891	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SKIL	6498	broad.mit.edu	37	3	170108952	170108952	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
EIF2B5	8893	broad.mit.edu	37	3	183860565	183860565	+	Splice_Site	SNP	A	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
VPS8	23355	broad.mit.edu	37	3	184570306	184570306	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAP3K13	9175	broad.mit.edu	37	3	185191489	185191489	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
HRG	3273	broad.mit.edu	37	3	186395041	186395041	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
C3orf21	152002	broad.mit.edu	37	3	194790491	194790491	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRCH3	84859	broad.mit.edu	37	3	197593030	197593030	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRNT1	51095	broad.mit.edu	37	3	3189210	3189210	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
VIPR1	7433	broad.mit.edu	37	3	42573763	42573763	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCRL2	9034	broad.mit.edu	37	3	46450087	46450087	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
APEH	327	broad.mit.edu	37	3	49713611	49713611	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MST1R	4486	broad.mit.edu	37	3	49933757	49933757	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TLR9	54106	broad.mit.edu	37	3	52264889	52264889	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
GLYCTK	132158	broad.mit.edu	37	3	52325046	52325046	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
NISCH	11188	broad.mit.edu	37	3	52523592	52523592	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRKCD	5580	broad.mit.edu	37	3	53212459	53212459	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDZRN3	23024	broad.mit.edu	37	3	73438983	73438983	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CNTN3	5067	broad.mit.edu	37	3	74350684	74350684	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RG9MTD2	93587	broad.mit.edu	37	4	100479303	100479303	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
BANK1	55024	broad.mit.edu	37	4	102981490	102981490	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
BDH2	56898	broad.mit.edu	37	4	104013836	104013836	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
INTS12	57117	broad.mit.edu	37	4	106614616	106614616	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
EGF	1950	broad.mit.edu	37	4	110882118	110882118	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ALPK1	80216	broad.mit.edu	37	4	113362208	113362208	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRDM5	11107	broad.mit.edu	37	4	121738027	121738027	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDH10	57575	broad.mit.edu	37	4	134072563	134072563	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA1530	57654	broad.mit.edu	37	4	1347183	1347183	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
FGA	2243	broad.mit.edu	37	4	155507837	155507837	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
DDX60	55601	broad.mit.edu	37	4	169208323	169208323	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ODZ3	55714	broad.mit.edu	37	4	183664474	183664474	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
C4orf41	60684	broad.mit.edu	37	4	184614842	184614842	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SEL1L3	23231	broad.mit.edu	37	4	25789920	25789920	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TLR10	81793	broad.mit.edu	37	4	38776503	38776503	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RFC1	5981	broad.mit.edu	37	4	39308303	39308303	+	Missense_Mutation	SNP	G	A	A	rs55727832		TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF721	170960	broad.mit.edu	37	4	435805	435805	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MSX1	4487	broad.mit.edu	37	4	4864675	4864675	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
FIP1L1	81608	broad.mit.edu	37	4	54324885	54324885	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CXCL13	10563	broad.mit.edu	37	4	78527049	78527049	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
WDFY3	23001	broad.mit.edu	37	4	85662946	85662946	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGAP24	83478	broad.mit.edu	37	4	86893235	86893235	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SMARCAD1	56916	broad.mit.edu	37	4	95155124	95155124	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC12A7	10723	broad.mit.edu	37	5	1076837	1076837	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMED7	51014	broad.mit.edu	37	5	114951919	114951919	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHA1	56147	broad.mit.edu	37	5	140167237	140167237	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHB4	56131	broad.mit.edu	37	5	140503600	140503600	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHB10	56126	broad.mit.edu	37	5	140574015	140574015	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHGA1	56114	broad.mit.edu	37	5	140712087	140712087	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIO	7204	broad.mit.edu	37	5	14472765	14472765	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
HTR4	3360	broad.mit.edu	37	5	147928298	147928298	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAD1	5810	broad.mit.edu	37	5	34913668	34913668	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
NUP155	9631	broad.mit.edu	37	5	37371030	37371030	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
LIFR	3977	broad.mit.edu	37	5	38506728	38506728	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTGER4	5734	broad.mit.edu	37	5	40681862	40681862	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5235258	5235258	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0947	23379	broad.mit.edu	37	5	5476188	5476188	+	Silent	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MIER3	166968	broad.mit.edu	37	5	56219227	56219227	+	Missense_Mutation	SNP	A	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PIK3R1	5295	broad.mit.edu	37	5	67590446	67590446	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL4A3BP	10087	broad.mit.edu	37	5	74675245	74675245	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MSH3	4437	broad.mit.edu	37	5	79950603	79950603	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MSH3	4437	broad.mit.edu	37	5	80024675	80024675	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
VCAN	1462	broad.mit.edu	37	5	82832829	82832829	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
LNPEP	4012	broad.mit.edu	37	5	96349455	96349455	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RIOK2	55781	broad.mit.edu	37	5	96503505	96503505	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RTN4IP1	84816	broad.mit.edu	37	6	107035677	107035677	+	Silent	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAP3K5	4217	broad.mit.edu	37	6	136977457	136977457	+	Silent	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	144803392	144803392	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RMND1	55005	broad.mit.edu	37	6	151742433	151742433	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CNKSR3	154043	broad.mit.edu	37	6	154771348	154771348	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
QKI	9444	broad.mit.edu	37	6	163899843	163899843	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
FRMD1	79981	broad.mit.edu	37	6	168464360	168464360	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SMOC2	64094	broad.mit.edu	37	6	169051384	169051384	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
HFE	3077	broad.mit.edu	37	6	26092939	26092939	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
HIST1H2BH	8345	broad.mit.edu	37	6	26252142	26252142	+	Silent	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
HIST1H4I	8294	broad.mit.edu	37	6	27107244	27107244	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
HLA-E	3133	broad.mit.edu	37	6	30457338	30457338	+	Silent	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
BAT1	7919	broad.mit.edu	37	6	31498646	31498646	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TNXB	7148	broad.mit.edu	37	6	32016366	32016366	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
HSD17B8	7923	broad.mit.edu	37	6	33173008	33173008	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
HSD17B8	7923	broad.mit.edu	37	6	33173950	33173950	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RNF8	9025	broad.mit.edu	37	6	37328350	37328350	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM50B	26240	broad.mit.edu	37	6	3850759	3850759	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRPF4B	8899	broad.mit.edu	37	6	4049306	4049306	+	Silent	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TSPO2	222642	broad.mit.edu	37	6	41011326	41011326	+	Silent	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
FRS3	10817	broad.mit.edu	37	6	41739006	41739006	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CUL7	9820	broad.mit.edu	37	6	43008354	43008354	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MEP1A	4224	broad.mit.edu	37	6	46801038	46801038	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CD2AP	23607	broad.mit.edu	37	6	47576971	47576971	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51524156	51524157	+	Missense_Mutation	DNP	TC	CA	CA			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PAQR8	85315	broad.mit.edu	37	6	52268302	52268302	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
GSTA4	2941	broad.mit.edu	37	6	52850346	52850346	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SMAP1	60682	broad.mit.edu	37	6	71566608	71566608	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
DSP	1832	broad.mit.edu	37	6	7581110	7581110	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM46A	55603	broad.mit.edu	37	6	82459984	82459984	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
NT5E	4907	broad.mit.edu	37	6	86181054	86181054	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ORC3L	23595	broad.mit.edu	37	6	88362934	88362934	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
BACH2	60468	broad.mit.edu	37	6	90718326	90718326	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PIK3CG	5294	broad.mit.edu	37	7	106509785	106509785	+	Silent	SNP	T	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
FOXP2	93986	broad.mit.edu	37	7	114304340	114304340	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MET	4233	broad.mit.edu	37	7	116409824	116409824	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MET	4233	broad.mit.edu	37	7	116436028	116436028	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTC26	79989	broad.mit.edu	37	7	138863036	138863036	+	Silent	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151927069	151927069	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MIOS	54468	broad.mit.edu	37	7	7628157	7628157	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	82072745	82072745	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TAF6	6878	broad.mit.edu	37	7	99707583	99707583	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZFPM2	23414	broad.mit.edu	37	8	106814193	106814193	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYBU	55638	broad.mit.edu	37	8	110587905	110587905	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
EXT1	2131	broad.mit.edu	37	8	119122991	119122991	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIB1	10221	broad.mit.edu	37	8	126448548	126448548	+	Silent	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYC	4609	broad.mit.edu	37	8	128750661	128750661	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTK2	5747	broad.mit.edu	37	8	141856744	141856744	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPPK1	83481	broad.mit.edu	37	8	144943483	144943483	+	Silent	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
BOP1	23246	broad.mit.edu	37	8	145512853	145512853	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PSD3	23362	broad.mit.edu	37	8	18622977	18622977	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPB49	2039	broad.mit.edu	37	8	21926966	21926966	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RHOBTB2	23221	broad.mit.edu	37	8	22863549	22863549	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHMP7	91782	broad.mit.edu	37	8	23112846	23112846	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CYP7A1	1581	broad.mit.edu	37	8	59409297	59409297	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
MTFR1	9650	broad.mit.edu	37	8	66619459	66619459	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
CRISPLD1	83690	broad.mit.edu	37	8	75941732	75941732	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PSKH2	85481	broad.mit.edu	37	8	87076269	87076269	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA1529	57653	broad.mit.edu	37	9	100079488	100079488	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZFP37	7539	broad.mit.edu	37	9	115805729	115805729	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119770438	119770438	+	Silent	SNP	T	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
GARNL3	84253	broad.mit.edu	37	9	130111209	130111209	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SH2D3C	10044	broad.mit.edu	37	9	130536540	130536540	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
NUP214	8021	broad.mit.edu	37	9	134003045	134003045	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
NACC2	138151	broad.mit.edu	37	9	138903719	138903719	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SEC16A	9919	broad.mit.edu	37	9	139371368	139371368	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZMYND19	116225	broad.mit.edu	37	9	140477494	140477494	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPS6	6194	broad.mit.edu	37	9	19376351	19376351	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ELAVL2	1993	broad.mit.edu	37	9	23731071	23731071	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TOPORS	10210	broad.mit.edu	37	9	32543021	32543021	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TOPORS	10210	broad.mit.edu	37	9	32544192	32544192	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
GRHPR	9380	broad.mit.edu	37	9	37429803	37429803	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
DOCK8	81704	broad.mit.edu	37	9	422095	422095	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMEM2	23670	broad.mit.edu	37	9	74319522	74319522	+	Silent	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ROR2	4920	broad.mit.edu	37	9	94486310	94486310	+	Silent	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPTLC1	10558	broad.mit.edu	37	9	94809522	94809522	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
TBC1D8B	54885	broad.mit.edu	37	X	106083998	106083998	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PIGA	5277	broad.mit.edu	37	X	15349792	15349792	+	Silent	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
BMX	660	broad.mit.edu	37	X	15548141	15548141	+	Silent	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
KLHL34	257240	broad.mit.edu	37	X	21675005	21675005	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
POLA1	5422	broad.mit.edu	37	X	24906201	24906201	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
IL1RAPL1	11141	broad.mit.edu	37	X	29935671	29935671	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
UBA1	7317	broad.mit.edu	37	X	47069375	47069375	+	Silent	SNP	C	T	T			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLP2	5355	broad.mit.edu	37	X	49030735	49030736	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
OTUD6A	139562	broad.mit.edu	37	X	69282886	69282886	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP7A	538	broad.mit.edu	37	X	77245376	77245376	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
KRTAP5-5	439915	broad.mit.edu	37	11	1651586	1651615	+	In_Frame_Del	DEL	CTGCTGCCAGTCCAGCTGCTGTAAGCCTTA	-	-	rs71025765		TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR180	160897	broad.mit.edu	37	13	95273330	95273330	+	Splice_Site	DEL	A	-	-			TCGA-BT-A20J-01	TCGA-BT-A20J-01									Somatic	Phase_I	Capture				Illumina GAIIx
