Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ADAM12	8038	broad.mit.edu	37	10	127737960	127737960	+	Silent	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADAM12	8038	broad.mit.edu	37	10	128018989	128018989	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGAP21	57584	broad.mit.edu	37	10	24908838	24908838	+	Missense_Mutation	SNP	A	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYO3A	53904	broad.mit.edu	37	10	26455034	26455034	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
WAC	51322	broad.mit.edu	37	10	28824669	28824669	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ITIH5	80760	broad.mit.edu	37	10	7608067	7608068	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
DLG5	9231	broad.mit.edu	37	10	79576344	79576344	+	Silent	SNP	G	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAT1A	4143	broad.mit.edu	37	10	82043718	82043718	+	Silent	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
CRTAC1	55118	broad.mit.edu	37	10	99696115	99696115	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA1826	84437	broad.mit.edu	37	11	105880645	105880645	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
HSPB2	3316	broad.mit.edu	37	11	111784284	111784284	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM55D	54827	broad.mit.edu	37	11	114441787	114441787	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
TAGLN	6876	broad.mit.edu	37	11	117073833	117073833	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
MLL	4297	broad.mit.edu	37	11	118374909	118374909	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
HINFP	25988	broad.mit.edu	37	11	119003661	119003661	+	Silent	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR8B12	219858	broad.mit.edu	37	11	124413346	124413346	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
PKNOX2	63876	broad.mit.edu	37	11	125298937	125298937	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGAP32	9743	broad.mit.edu	37	11	128844494	128844494	+	Silent	SNP	A	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
OPCML	4978	broad.mit.edu	37	11	132290160	132290160	+	Missense_Mutation	SNP	T	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
NAV2	89797	broad.mit.edu	37	11	19970352	19970352	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
SIGIRR	59307	broad.mit.edu	37	11	408113	408113	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR56A4	120793	broad.mit.edu	37	11	6023399	6023399	+	Missense_Mutation	SNP	A	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
CD5	921	broad.mit.edu	37	11	60885820	60885820	+	Silent	SNP	T	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR56B4	196335	broad.mit.edu	37	11	6129720	6129720	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
AHNAK	79026	broad.mit.edu	37	11	62285078	62285078	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM160A2	84067	broad.mit.edu	37	11	6244846	6244846	+	Silent	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
DCHS1	8642	broad.mit.edu	37	11	6649910	6649910	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
SAPS3	55291	broad.mit.edu	37	11	68370851	68370851	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
PAAF1	80227	broad.mit.edu	37	11	73620513	73620513	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
AMOTL1	154810	broad.mit.edu	37	11	94602363	94602363	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACAD10	80724	broad.mit.edu	37	12	112174762	112174762	+	Silent	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
C12orf51	283450	broad.mit.edu	37	12	112605677	112605677	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
IQCD	115811	broad.mit.edu	37	12	113633634	113633634	+	Missense_Mutation	SNP	T	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBXO21	23014	broad.mit.edu	37	12	117627036	117627036	+	Missense_Mutation	SNP	T	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBXO21	23014	broad.mit.edu	37	12	117627039	117627039	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
GCN1L1	10985	broad.mit.edu	37	12	120568496	120568496	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
GCN1L1	10985	broad.mit.edu	37	12	120611536	120611536	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
COQ5	84274	broad.mit.edu	37	12	120942706	120942706	+	Silent	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
FZD10	11211	broad.mit.edu	37	12	130648250	130648250	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF10	7556	broad.mit.edu	37	12	133732756	133732756	+	Silent	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
C12orf60	144608	broad.mit.edu	37	12	14976352	14976352	+	Silent	SNP	C	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRTM2	654429	broad.mit.edu	37	12	1943830	1943830	+	Silent	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
FGD4	121512	broad.mit.edu	37	12	32760950	32760950	+	Silent	SNP	G	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
KDM5A	5927	broad.mit.edu	37	12	416853	416853	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
MLL2	8085	broad.mit.edu	37	12	49444319	49444319	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
LMBR1L	55716	broad.mit.edu	37	12	49491848	49491848	+	Silent	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
DIP2B	57609	broad.mit.edu	37	12	51138369	51138369	+	Splice_Site	SNP	G	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
CSRNP2	81566	broad.mit.edu	37	12	51461550	51461550	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC4A8	9498	broad.mit.edu	37	12	51847456	51847456	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
KRT76	51350	broad.mit.edu	37	12	53170846	53170846	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
KRT79	338785	broad.mit.edu	37	12	53228038	53228038	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYO1A	4640	broad.mit.edu	37	12	57423361	57423361	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRIG3	121227	broad.mit.edu	37	12	59274438	59274438	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
C12orf26	84190	broad.mit.edu	37	12	82793112	82793112	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
C12orf50	160419	broad.mit.edu	37	12	88420329	88420329	+	Silent	SNP	G	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
WNK1	65125	broad.mit.edu	37	12	936296	936296	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC38	120935	broad.mit.edu	37	12	96266046	96266046	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
SACS	26278	broad.mit.edu	37	13	23930096	23930096	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0564	23078	broad.mit.edu	37	13	42259229	42259229	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
EML1	2009	broad.mit.edu	37	14	100375681	100375681	+	Splice_Site	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
C14orf68	283600	broad.mit.edu	37	14	100792529	100792529	+	Silent	SNP	C	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
TECPR2	9895	broad.mit.edu	37	14	102904406	102904406	+	Silent	SNP	C	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
FOXG1	2290	broad.mit.edu	37	14	29237689	29237689	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRKD1	5587	broad.mit.edu	37	14	30066873	30066873	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
NPAS3	64067	broad.mit.edu	37	14	34269591	34269591	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
NIN	51199	broad.mit.edu	37	14	51204963	51204963	+	Missense_Mutation	SNP	T	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
FRMD6	122786	broad.mit.edu	37	14	52167842	52167842	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCNX	22990	broad.mit.edu	37	14	71540497	71540497	+	Silent	SNP	C	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
SNW1	22938	broad.mit.edu	37	14	78184840	78184840	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
SEL1L	6400	broad.mit.edu	37	14	81946033	81946033	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
GALC	2581	broad.mit.edu	37	14	88401080	88401080	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	93944052	93944052	+	Silent	SNP	A	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
MGA	23269	broad.mit.edu	37	15	42041126	42041126	+	Splice_Site	SNP	G	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
DMXL2	23312	broad.mit.edu	37	15	51773566	51773566	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
PYGO1	26108	broad.mit.edu	37	15	55839197	55839197	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF609	23060	broad.mit.edu	37	15	64966254	64966254	+	Missense_Mutation	SNP	A	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
DENND4A	10260	broad.mit.edu	37	15	66048786	66048786	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
SCAMP5	192683	broad.mit.edu	37	15	75305046	75305046	+	Silent	SNP	C	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
SCAMP5	192683	broad.mit.edu	37	15	75305073	75305073	+	Silent	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
IREB2	3658	broad.mit.edu	37	15	78758753	78758753	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
MESDC2	23184	broad.mit.edu	37	15	81274291	81274291	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADAMTSL3	57188	broad.mit.edu	37	15	84694106	84694106	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
RHCG	51458	broad.mit.edu	37	15	90020842	90020842	+	Missense_Mutation	SNP	T	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
TNP2	7142	broad.mit.edu	37	16	11362858	11362858	+	Missense_Mutation	SNP	A	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMC7	79905	broad.mit.edu	37	16	19020681	19020681	+	Silent	SNP	C	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
NDUFB10	4716	broad.mit.edu	37	16	2011251	2011251	+	Silent	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
THUMPD1	55623	broad.mit.edu	37	16	20748467	20748467	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
PAQR4	124222	broad.mit.edu	37	16	3019837	3019837	+	Silent	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
SEPT1	1731	broad.mit.edu	37	16	30392786	30392786	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ITFG3	83986	broad.mit.edu	37	16	310048	310048	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31429662	31429662	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC12A4	6560	broad.mit.edu	37	16	67985834	67985834	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
HAS3	3038	broad.mit.edu	37	16	69147356	69147356	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
SF3B3	23450	broad.mit.edu	37	16	70563070	70563070	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
WDR24	84219	broad.mit.edu	37	16	735419	735419	+	Silent	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
VAT1L	57687	broad.mit.edu	37	16	77910312	77910312	+	Silent	SNP	G	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
C16orf46	123775	broad.mit.edu	37	16	81095726	81095726	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0182	23199	broad.mit.edu	37	16	85691124	85691124	+	Silent	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10248889	10248889	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
AKAP10	11216	broad.mit.edu	37	17	19845219	19845219	+	Silent	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
NOS2	4843	broad.mit.edu	37	17	26106004	26106004	+	Silent	SNP	G	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
EFCAB5	374786	broad.mit.edu	37	17	28380773	28380773	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
GAS2L2	246176	broad.mit.edu	37	17	34071981	34071981	+	Silent	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCC3	8714	broad.mit.edu	37	17	48761083	48761083	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
UTP18	51096	broad.mit.edu	37	17	49357465	49357465	+	Missense_Mutation	SNP	A	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
TBX4	9496	broad.mit.edu	37	17	59560585	59560585	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACE	1636	broad.mit.edu	37	17	61566424	61566424	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNJ16	3773	broad.mit.edu	37	17	68128659	68128659	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
CD300A	11314	broad.mit.edu	37	17	72480186	72480186	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0195	9772	broad.mit.edu	37	17	73489627	73489627	+	Silent	SNP	A	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577107	7577107	+	Nonsense_Mutation	SNP	A	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
PGS1	9489	broad.mit.edu	37	17	76400074	76400074	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
NARF	26502	broad.mit.edu	37	17	80426772	80426772	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
LAMA3	3909	broad.mit.edu	37	18	21474922	21474922	+	Missense_Mutation	SNP	A	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
NDC80	10403	broad.mit.edu	37	18	2595619	2595619	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ECSIT	51295	broad.mit.edu	37	19	11624758	11624758	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF563	147837	broad.mit.edu	37	19	12430206	12430206	+	Silent	SNP	T	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR7A5	26659	broad.mit.edu	37	19	14938677	14938677	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR10H4	126541	broad.mit.edu	37	19	16060285	16060285	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF555	148254	broad.mit.edu	37	19	2851495	2851495	+	Missense_Mutation	SNP	T	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
LSR	51599	broad.mit.edu	37	19	35757739	35757739	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
C19orf29	58509	broad.mit.edu	37	19	3612107	3612107	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
CYP2A7	1549	broad.mit.edu	37	19	41383813	41383813	+	Missense_Mutation	SNP	A	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
SULT2B1	6820	broad.mit.edu	37	19	49100124	49100124	+	Silent	SNP	G	A	A	rs112884737		TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
FUT1	2523	broad.mit.edu	37	19	49253764	49253764	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLEKHA4	57664	broad.mit.edu	37	19	49348658	49348658	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
NOSIP	51070	broad.mit.edu	37	19	50060221	50060221	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR32	2854	broad.mit.edu	37	19	51274695	51274695	+	Silent	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
VSTM1	284415	broad.mit.edu	37	19	54561828	54561828	+	Silent	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
NLRP7	199713	broad.mit.edu	37	19	55450590	55450590	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
U2AF2	11338	broad.mit.edu	37	19	56181003	56181003	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
NLRP4	147945	broad.mit.edu	37	19	56369479	56369479	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZIM2	23619	broad.mit.edu	37	19	57286539	57286539	+	Silent	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF418	147686	broad.mit.edu	37	19	58438177	58438177	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
AMIGO1	57463	broad.mit.edu	37	1	110050899	110050899	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
MASP2	10747	broad.mit.edu	37	1	11102931	11102931	+	Splice_Site	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
C1orf103	55791	broad.mit.edu	37	1	111494891	111494891	+	Silent	SNP	C	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ST7L	54879	broad.mit.edu	37	1	113161719	113161720	+	Missense_Mutation	DNP	CC	AG	AG			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
C1orf158	93190	broad.mit.edu	37	1	12819302	12819302	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
C1orf158	93190	broad.mit.edu	37	1	12820737	12820737	+	Silent	SNP	C	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
MTMR11	10903	broad.mit.edu	37	1	149903256	149903256	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
TCHH	7062	broad.mit.edu	37	1	152081550	152081550	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
HRNR	388697	broad.mit.edu	37	1	152193791	152193791	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152283163	152283163	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152285219	152285220	+	Missense_Mutation	DNP	GG	CT	CT			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152327473	152327473	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
LCE1C	353133	broad.mit.edu	37	1	152777745	152777745	+	Silent	SNP	A	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
NUP210L	91181	broad.mit.edu	37	1	154018563	154018563	+	Silent	SNP	T	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
TPM3	7170	broad.mit.edu	37	1	154130139	154130139	+	Silent	SNP	G	C	C	rs1051220		TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHRNB2	1141	broad.mit.edu	37	1	154542804	154542804	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHRNB2	1141	broad.mit.edu	37	1	154544007	154544007	+	Missense_Mutation	SNP	C	G	G	rs71628622		TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHRNB2	1141	broad.mit.edu	37	1	154544202	154544202	+	Silent	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
GBA	2629	broad.mit.edu	37	1	155207267	155207267	+	Silent	SNP	C	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
GBA	2629	broad.mit.edu	37	1	155209446	155209446	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
INSRR	3645	broad.mit.edu	37	1	156823630	156823630	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
NTRK1	4914	broad.mit.edu	37	1	156845891	156845892	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
CD5L	922	broad.mit.edu	37	1	157805906	157805906	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR6Y1	391112	broad.mit.edu	37	1	158517676	158517676	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158650449	158650449	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
FCER1A	2205	broad.mit.edu	37	1	159273848	159273848	+	Silent	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC19	25790	broad.mit.edu	37	1	159854250	159854250	+	Missense_Mutation	SNP	T	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
IGSF9	57549	broad.mit.edu	37	1	159897153	159897153	+	Silent	SNP	T	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGAP30	257106	broad.mit.edu	37	1	161023136	161023136	+	Silent	SNP	C	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
SDHC	6391	broad.mit.edu	37	1	161293414	161293414	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
CLCNKB	1188	broad.mit.edu	37	1	16372138	16372138	+	Silent	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176740114	176740114	+	Missense_Mutation	SNP	T	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
TOR3A	64222	broad.mit.edu	37	1	179051393	179051393	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
CEP350	9857	broad.mit.edu	37	1	180012207	180012207	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA1614	57710	broad.mit.edu	37	1	180885721	180885721	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
IER5	51278	broad.mit.edu	37	1	181058781	181058781	+	Missense_Mutation	SNP	A	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
DHX9	1660	broad.mit.edu	37	1	182823164	182823164	+	Splice_Site	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186062301	186062301	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
RGS18	64407	broad.mit.edu	37	1	192127861	192127861	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
UBR4	23352	broad.mit.edu	37	1	19491386	19491386	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ASPM	259266	broad.mit.edu	37	1	197073873	197073873	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198719627	198719627	+	Missense_Mutation	SNP	T	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
NR5A2	2494	broad.mit.edu	37	1	200017817	200017817	+	Silent	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
NUAK2	81788	broad.mit.edu	37	1	205272802	205272802	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM71A	149647	broad.mit.edu	37	1	212798782	212798782	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
DUSP10	11221	broad.mit.edu	37	1	221879668	221879668	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228471295	228471295	+	Silent	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPHB2	2048	broad.mit.edu	37	1	23236885	23236885	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYOM3	127294	broad.mit.edu	37	1	24397687	24397687	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
LDLRAP1	26119	broad.mit.edu	37	1	25891685	25891685	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
EIF3I	8668	broad.mit.edu	37	1	32688180	32688180	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRDM16	63976	broad.mit.edu	37	1	3328010	3328010	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
DLGAP3	58512	broad.mit.edu	37	1	35370070	35370070	+	Silent	SNP	C	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
TIE1	7075	broad.mit.edu	37	1	43774766	43774766	+	Silent	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIF2C	11004	broad.mit.edu	37	1	45205650	45205650	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPS15	2060	broad.mit.edu	37	1	51929378	51929378	+	Silent	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPS15	2060	broad.mit.edu	37	1	51934235	51934235	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
GLIS1	148979	broad.mit.edu	37	1	54060428	54060429	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
WLS	79971	broad.mit.edu	37	1	68620905	68620905	+	Silent	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTLL7	79739	broad.mit.edu	37	1	84387005	84387005	+	Silent	SNP	T	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
KLHL17	339451	broad.mit.edu	37	1	900368	900368	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
BRDT	676	broad.mit.edu	37	1	92446894	92446894	+	Missense_Mutation	SNP	T	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANKRD5	63926	broad.mit.edu	37	20	10030758	10030758	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
TM9SF4	9777	broad.mit.edu	37	20	30723942	30723942	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
FASTKD5	60493	broad.mit.edu	37	20	3127517	3127517	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
SNTA1	6640	broad.mit.edu	37	20	32026723	32026723	+	Silent	SNP	C	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	41400092	41400092	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	41408892	41408892	+	Silent	SNP	G	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
TFAP2C	7022	broad.mit.edu	37	20	55212966	55212966	+	Missense_Mutation	SNP	A	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
KRTAP22-1	337979	broad.mit.edu	37	21	31973474	31973474	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNJ6	3763	broad.mit.edu	37	21	39087121	39087121	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
LCA5L	150082	broad.mit.edu	37	21	40794949	40794949	+	Silent	SNP	A	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
DSCAM	1826	broad.mit.edu	37	21	42080497	42080497	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
RIPK4	54101	broad.mit.edu	37	21	43161781	43161781	+	Silent	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRDM15	63977	broad.mit.edu	37	21	43221851	43221851	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
MCM3AP	8888	broad.mit.edu	37	21	47655203	47655203	+	Silent	SNP	C	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
DIP2A	23181	broad.mit.edu	37	21	47918530	47918530	+	Silent	SNP	C	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
POLR2F	5435	broad.mit.edu	37	22	38355472	38355472	+	Silent	SNP	G	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
TAB1	10454	broad.mit.edu	37	22	39817833	39817833	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM83F	113828	broad.mit.edu	37	22	40415273	40415273	+	Silent	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZC3H7B	23264	broad.mit.edu	37	22	41752423	41752423	+	Silent	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZC3H7B	23264	broad.mit.edu	37	22	41753225	41753225	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACO2	50	broad.mit.edu	37	22	41923345	41923345	+	Silent	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
TCF20	6942	broad.mit.edu	37	22	42606218	42606218	+	Silent	SNP	C	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
SELO	83642	broad.mit.edu	37	22	50649091	50649091	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
MIOX	55586	broad.mit.edu	37	22	50927504	50927504	+	Silent	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
TGFBRAP1	9392	broad.mit.edu	37	2	105883968	105883968	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
MALL	7851	broad.mit.edu	37	2	110849283	110849283	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
SAP130	79595	broad.mit.edu	37	2	128775266	128775266	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
LCT	3938	broad.mit.edu	37	2	136567117	136567117	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ORC4L	5000	broad.mit.edu	37	2	148705641	148705641	+	Silent	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
SCN2A	6326	broad.mit.edu	37	2	166229818	166229818	+	Silent	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168101392	168101392	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168108453	168108453	+	Silent	SNP	A	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179431334	179431334	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179547564	179547564	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179596956	179596956	+	Missense_Mutation	SNP	A	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	190044277	190044277	+	Missense_Mutation	SNP	T	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
STAT1	6772	broad.mit.edu	37	2	191847151	191847151	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
HECW2	57520	broad.mit.edu	37	2	197092943	197092943	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
GTF3C3	9330	broad.mit.edu	37	2	197641263	197641263	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
RHOB	388	broad.mit.edu	37	2	20647450	20647450	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220337015	220337015	+	Missense_Mutation	SNP	T	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
CAPN10	11132	broad.mit.edu	37	2	241531491	241531491	+	Silent	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
MTERFD2	130916	broad.mit.edu	37	2	242038846	242038846	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ASXL2	55252	broad.mit.edu	37	2	25965729	25965729	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
BIRC6	57448	broad.mit.edu	37	2	32716552	32716552	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49190073	49190073	+	Silent	SNP	A	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
PSME4	23198	broad.mit.edu	37	2	54093286	54093286	+	Silent	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
MEIS1	4211	broad.mit.edu	37	2	66775088	66775088	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGAP25	9938	broad.mit.edu	37	2	69015022	69015022	+	Missense_Mutation	SNP	A	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPL24	6152	broad.mit.edu	37	3	101400024	101400024	+	Silent	SNP	C	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP2B2	491	broad.mit.edu	37	3	10417161	10417161	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYLK	4638	broad.mit.edu	37	3	123419119	123419119	+	Missense_Mutation	SNP	C	T	T	rs72491150		TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
NEK11	79858	broad.mit.edu	37	3	130871348	130871348	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
MED12L	116931	broad.mit.edu	37	3	151102914	151102914	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR149	344758	broad.mit.edu	37	3	154055940	154055940	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLCH1	23007	broad.mit.edu	37	3	155212182	155212182	+	Silent	SNP	G	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
VEPH1	79674	broad.mit.edu	37	3	156983384	156983384	+	Silent	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
MECOM	2122	broad.mit.edu	37	3	168845829	168845829	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARPM1	84517	broad.mit.edu	37	3	169485742	169485742	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
MFN1	55669	broad.mit.edu	37	3	179082125	179082125	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
KNG1	3827	broad.mit.edu	37	3	186459867	186459867	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
MASP1	5648	broad.mit.edu	37	3	187003830	187003830	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARPP21	10777	broad.mit.edu	37	3	35770879	35770879	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
VILL	50853	broad.mit.edu	37	3	38047993	38047993	+	Silent	SNP	C	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38739807	38739807	+	Missense_Mutation	SNP	T	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
RTP3	83597	broad.mit.edu	37	3	46542298	46542298	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
SMARCC1	6599	broad.mit.edu	37	3	47755937	47755937	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR5K2	402135	broad.mit.edu	37	3	98217282	98217282	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
TACR3	6870	broad.mit.edu	37	4	104510983	104510983	+	Silent	SNP	T	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL25A1	84570	broad.mit.edu	37	4	109740467	109740467	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
BOD1L	259282	broad.mit.edu	37	4	13602053	13602053	+	Silent	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0922	23240	broad.mit.edu	37	4	154502664	154502664	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
FGA	2243	broad.mit.edu	37	4	155505643	155505644	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
WWC2	80014	broad.mit.edu	37	4	184129307	184129307	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
FRG1	2483	broad.mit.edu	37	4	190862215	190862215	+	Silent	SNP	C	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPP2R2C	5522	broad.mit.edu	37	4	6325278	6325278	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
MFSD7	84179	broad.mit.edu	37	4	677066	677066	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
COPS4	51138	broad.mit.edu	37	4	83989596	83989596	+	Missense_Mutation	SNP	A	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
AFF1	4299	broad.mit.edu	37	4	88036209	88036209	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC12A2	6558	broad.mit.edu	37	5	127471428	127471428	+	Missense_Mutation	SNP	A	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ETF1	2107	broad.mit.edu	37	5	137849377	137849377	+	Missense_Mutation	SNP	A	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHB5	26167	broad.mit.edu	37	5	140517289	140517289	+	Nonsense_Mutation	SNP	C	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHGB3	56102	broad.mit.edu	37	5	140751625	140751625	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF622	90441	broad.mit.edu	37	5	16465637	16465637	+	Silent	SNP	G	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBXW11	23291	broad.mit.edu	37	5	171318553	171318553	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
FGFR4	2264	broad.mit.edu	37	5	176518005	176518005	+	Missense_Mutation	SNP	T	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF354C	30832	broad.mit.edu	37	5	178503483	178503483	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAI14	26064	broad.mit.edu	37	5	34823943	34823943	+	Missense_Mutation	SNP	A	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45303809	45303809	+	Nonsense_Mutation	SNP	G	A	A	rs35229491		TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADAMTS6	11174	broad.mit.edu	37	5	64748566	64748566	+	Missense_Mutation	SNP	T	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
MCCC2	64087	broad.mit.edu	37	5	70930791	70930791	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARRDC3	57561	broad.mit.edu	37	5	90669643	90669643	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
HSF2	3298	broad.mit.edu	37	6	122733619	122733619	+	Silent	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
C6orf174	387104	broad.mit.edu	37	6	127796469	127796469	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
NKAPL	222698	broad.mit.edu	37	6	28228103	28228103	+	Silent	SNP	C	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
GABBR1	2550	broad.mit.edu	37	6	29572648	29572648	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZFP57	346171	broad.mit.edu	37	6	29640795	29640796	+	Missense_Mutation	DNP	GG	CT	CT			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIM10	10107	broad.mit.edu	37	6	30128418	30128418	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
POU5F1	5460	broad.mit.edu	37	6	31133762	31133762	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
TNXB	7148	broad.mit.edu	37	6	32018062	32018062	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
C6orf222	389384	broad.mit.edu	37	6	36291124	36291126	+	Missense_Mutation	TNP	TGG	CTT	CTT			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM50B	26240	broad.mit.edu	37	6	3850672	3850672	+	Silent	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRERF1	55809	broad.mit.edu	37	6	42236926	42236926	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
KHDRBS2	202559	broad.mit.edu	37	6	62887182	62887182	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
PHIP	55023	broad.mit.edu	37	6	79650578	79650578	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ORC3L	23595	broad.mit.edu	37	6	88331710	88331710	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
MDN1	23195	broad.mit.edu	37	6	90354787	90354787	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
LMOD2	442721	broad.mit.edu	37	7	123296034	123296034	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
NUDT1	4521	broad.mit.edu	37	7	2284269	2284269	+	Silent	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
AOAH	313	broad.mit.edu	37	7	36633960	36633960	+	Missense_Mutation	SNP	A	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR141	353345	broad.mit.edu	37	7	37780823	37780823	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
H2AFV	94239	broad.mit.edu	37	7	44880564	44880564	+	Silent	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48280473	48280473	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
POM121	9883	broad.mit.edu	37	7	72412672	72412672	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
PILRA	29992	broad.mit.edu	37	7	99987517	99987517	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10469112	10469112	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
OXR1	55074	broad.mit.edu	37	8	107718630	107718631	+	Missense_Mutation	DNP	GA	TG	TG			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
AMAC1L2	83650	broad.mit.edu	37	8	11188908	11188908	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133941430	133941430	+	Silent	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139833571	139833571	+	Silent	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
TEX15	56154	broad.mit.edu	37	8	30704189	30704189	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADAM9	8754	broad.mit.edu	37	8	38948794	38948794	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLAT	5327	broad.mit.edu	37	8	42033661	42033661	+	Silent	SNP	C	A	A	rs13306824	byFrequency;by1000genomes	TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
MOS	4342	broad.mit.edu	37	8	57025924	57025924	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
NSMAF	8439	broad.mit.edu	37	8	59503463	59503463	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
CSPP1	79848	broad.mit.edu	37	8	68049786	68049786	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAD54B	25788	broad.mit.edu	37	8	95392549	95392549	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
MATN2	4147	broad.mit.edu	37	8	98973758	98973758	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
HRSP12	10247	broad.mit.edu	37	8	99118512	99118512	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
TNFSF8	944	broad.mit.edu	37	9	117692469	117692469	+	Missense_Mutation	SNP	A	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR21	2844	broad.mit.edu	37	9	125796872	125796872	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
GARNL3	84253	broad.mit.edu	37	9	130119519	130119519	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0649	9858	broad.mit.edu	37	9	138379116	138379116	+	Silent	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAI1	27019	broad.mit.edu	37	9	34514409	34514409	+	Silent	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
RORB	6096	broad.mit.edu	37	9	77257389	77257389	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
NAA35	60560	broad.mit.edu	37	9	88635862	88635862	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
ECM2	1842	broad.mit.edu	37	9	95285103	95285103	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107413848	107413848	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107850090	107850090	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPANXE	171489	broad.mit.edu	37	X	140785779	140785779	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAGEC3	139081	broad.mit.edu	37	X	140969237	140969237	+	Silent	SNP	G	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCNB3	85417	broad.mit.edu	37	X	50094645	50094645	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
TGIF2LX	90316	broad.mit.edu	37	X	89177393	89177393	+	Missense_Mutation	SNP	T	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
SH3PXD2B	285590	broad.mit.edu	37	5	171765673	171765674	+	Frame_Shift_Ins	INS	-	A	A			TCGA-BT-A20N-01	TCGA-BT-A20N-01									Somatic	Phase_I	Capture				Illumina GAIIx
