Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
PDCD11	22984	broad.mit.edu	37	10	105182763	105182763	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
C10orf79	80217	broad.mit.edu	37	10	105953694	105953694	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106982877	106982877	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	117704277	117704277	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
INPP5F	22876	broad.mit.edu	37	10	121563770	121563770	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
SEC61A2	55176	broad.mit.edu	37	10	12204226	12204226	+	Silent	SNP	G	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR123	84435	broad.mit.edu	37	10	134896169	134896169	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
ERCC6	2074	broad.mit.edu	37	10	50732248	50732248	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
C10orf18	54906	broad.mit.edu	37	10	5762896	5762896	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARID5B	84159	broad.mit.edu	37	10	63829550	63829550	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACTA2	59	broad.mit.edu	37	10	90701132	90701132	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
CASP5	838	broad.mit.edu	37	11	104868181	104868181	+	Missense_Mutation	SNP	A	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
EIF4G2	1982	broad.mit.edu	37	11	10821761	10821761	+	Silent	SNP	T	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARCN1	372	broad.mit.edu	37	11	118452000	118452000	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
MICAL2	9645	broad.mit.edu	37	11	12265655	12265655	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
IGSF9B	22997	broad.mit.edu	37	11	133794727	133794727	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
DUSP8	1850	broad.mit.edu	37	11	1579411	1579411	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCC8	6833	broad.mit.edu	37	11	17474774	17474774	+	Silent	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
TNNI2	7136	broad.mit.edu	37	11	1861878	1861878	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
LMO2	4005	broad.mit.edu	37	11	33886306	33886306	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
COMMD9	29099	broad.mit.edu	37	11	36300153	36300153	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR51S1	119692	broad.mit.edu	37	11	4869937	4869937	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
SMPD1	6609	broad.mit.edu	37	11	6415196	6415196	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
TM7SF2	7108	broad.mit.edu	37	11	64883439	64883439	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
MOGAT2	80168	broad.mit.edu	37	11	75439097	75439097	+	Silent	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCF11	51585	broad.mit.edu	37	11	82877725	82877725	+	Silent	SNP	A	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92087450	92087450	+	Nonsense_Mutation	SNP	T	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC67	159989	broad.mit.edu	37	11	93103298	93103298	+	Silent	SNP	G	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
CLEC1B	51266	broad.mit.edu	37	12	10149501	10149501	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
HSP90B1	7184	broad.mit.edu	37	12	104336352	104336352	+	Silent	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
HSP90B1	7184	broad.mit.edu	37	12	104336359	104336359	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
HSP90B1	7184	broad.mit.edu	37	12	104336567	104336567	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
CIT	11113	broad.mit.edu	37	12	120159203	120159203	+	Silent	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
ETV6	2120	broad.mit.edu	37	12	12037408	12037408	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRP6	4040	broad.mit.edu	37	12	12334021	12334021	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
GLT1D1	144423	broad.mit.edu	37	12	129373237	129373237	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
GOLGA3	2802	broad.mit.edu	37	12	133374950	133374950	+	Silent	SNP	G	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
AMN1	196394	broad.mit.edu	37	12	31850769	31850769	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
AMIGO2	347902	broad.mit.edu	37	12	47472350	47472350	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACCN2	41	broad.mit.edu	37	12	50453726	50453726	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC4A8	9498	broad.mit.edu	37	12	51890800	51890800	+	Silent	SNP	C	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
RARG	5916	broad.mit.edu	37	12	53607445	53607445	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF385A	25946	broad.mit.edu	37	12	54765456	54765456	+	Silent	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
RNF41	10193	broad.mit.edu	37	12	56600547	56600547	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
SCNN1A	6337	broad.mit.edu	37	12	6483849	6483849	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
LGR5	8549	broad.mit.edu	37	12	71977788	71977788	+	Silent	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	73046177	73046177	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
TNFRSF19	55504	broad.mit.edu	37	13	24243107	24243107	+	Silent	SNP	T	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM123A	219287	broad.mit.edu	37	13	25744014	25744014	+	Missense_Mutation	SNP	A	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
FLT3	2322	broad.mit.edu	37	13	28636122	28636122	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0564	23078	broad.mit.edu	37	13	42385394	42385394	+	Missense_Mutation	SNP	A	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105407903	105407903	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105408255	105408255	+	Silent	SNP	G	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105408514	105408514	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105416054	105416054	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
NID2	22795	broad.mit.edu	37	14	52481073	52481073	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
LTBP2	4053	broad.mit.edu	37	14	74973930	74973930	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
BDKRB1	623	broad.mit.edu	37	14	96730151	96730151	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
CORO2B	10391	broad.mit.edu	37	15	68937670	68937671	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
TSPAN3	10099	broad.mit.edu	37	15	77345133	77345133	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
SGK269	79834	broad.mit.edu	37	15	77472430	77472430	+	Silent	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMC3	342125	broad.mit.edu	37	15	81625521	81625521	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
AP3B2	8120	broad.mit.edu	37	15	83345282	83345282	+	Silent	SNP	T	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
DET1	55070	broad.mit.edu	37	15	89074506	89074506	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
NR2F2	7026	broad.mit.edu	37	15	96880592	96880592	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
SMG1	23049	broad.mit.edu	37	16	18859259	18859259	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	20997001	20997001	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF263	10127	broad.mit.edu	37	16	3339743	3339743	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
CREBBP	1387	broad.mit.edu	37	16	3817750	3817750	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
CORO7	79585	broad.mit.edu	37	16	4466517	4466517	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
THAP11	57215	broad.mit.edu	37	16	67876802	67876802	+	Silent	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC12A4	6560	broad.mit.edu	37	16	67979985	67979985	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZFHX3	463	broad.mit.edu	37	16	72992721	72992721	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATPAF2	91647	broad.mit.edu	37	17	17921970	17921970	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
GIT1	28964	broad.mit.edu	37	17	27909741	27909741	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZZEF1	23140	broad.mit.edu	37	17	4015972	4015972	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
STH	246744	broad.mit.edu	37	17	44076786	44076786	+	Silent	SNP	C	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
SP2	6668	broad.mit.edu	37	17	46000404	46000404	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
DLX3	1747	broad.mit.edu	37	17	48072068	48072068	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
BRIP1	83990	broad.mit.edu	37	17	59934548	59934548	+	Missense_Mutation	SNP	A	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNH6	81033	broad.mit.edu	37	17	61623123	61623123	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
FTSJ3	117246	broad.mit.edu	37	17	61897650	61897650	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM57A	79850	broad.mit.edu	37	17	641131	641131	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCA8	10351	broad.mit.edu	37	17	66937049	66937049	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCA9	10350	broad.mit.edu	37	17	67045523	67045523	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCA10	10349	broad.mit.edu	37	17	67189995	67189995	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
C17orf81	23587	broad.mit.edu	37	17	7162203	7162203	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577103	7577103	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
BAHCC1	57597	broad.mit.edu	37	17	79410151	79410151	+	Silent	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
FOXK2	3607	broad.mit.edu	37	17	80529635	80529635	+	Silent	SNP	G	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
KRBA2	124751	broad.mit.edu	37	17	8273001	8273001	+	Silent	SNP	T	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA1012	22878	broad.mit.edu	37	18	29511315	29511315	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
RIT2	6014	broad.mit.edu	37	18	40323522	40323522	+	Missense_Mutation	SNP	C	G	G	rs77976328	byFrequency;by1000genomes	TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYO9B	4650	broad.mit.edu	37	19	17263473	17263473	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	31039753	31039753	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0355	9710	broad.mit.edu	37	19	34832940	34832940	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39037100	39037100	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
FCGBP	8857	broad.mit.edu	37	19	40433743	40433743	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
CIC	23152	broad.mit.edu	37	19	42793047	42793047	+	Silent	SNP	T	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
CIC	23152	broad.mit.edu	37	19	42793049	42793049	+	Missense_Mutation	SNP	A	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
XRCC1	7515	broad.mit.edu	37	19	44079154	44079154	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF283	284349	broad.mit.edu	37	19	44352249	44352249	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF296	162979	broad.mit.edu	37	19	45575216	45575216	+	Silent	SNP	C	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
ERCC2	2068	broad.mit.edu	37	19	45855835	45855835	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTGIR	5739	broad.mit.edu	37	19	47124901	47124901	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
ALDH16A1	126133	broad.mit.edu	37	19	49967904	49967904	+	Silent	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF468	90333	broad.mit.edu	37	19	53352431	53352431	+	Silent	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF160	90338	broad.mit.edu	37	19	53573254	53573254	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
CACNG6	59285	broad.mit.edu	37	19	54502980	54502980	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRPF31	26121	broad.mit.edu	37	19	54632680	54632681	+	Missense_Mutation	DNP	GG	CC	CC			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTPRH	5794	broad.mit.edu	37	19	55696892	55696892	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
HSPBP1	23640	broad.mit.edu	37	19	55776711	55776711	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMEM146	257062	broad.mit.edu	37	19	5772930	5772930	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
NTNG1	22854	broad.mit.edu	37	1	107937933	107937933	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
STXBP3	6814	broad.mit.edu	37	1	109342863	109342863	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAGI3	260425	broad.mit.edu	37	1	114201796	114201796	+	Silent	SNP	G	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC22A15	55356	broad.mit.edu	37	1	116569600	116569600	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
GATAD2B	57459	broad.mit.edu	37	1	153792155	153792155	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
ASH1L	55870	broad.mit.edu	37	1	155449667	155449667	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
APOA1BP	128240	broad.mit.edu	37	1	156563828	156563828	+	Silent	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGAP30	257106	broad.mit.edu	37	1	161018826	161018826	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC35E2	9906	broad.mit.edu	37	1	1669760	1669760	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
FMO4	2329	broad.mit.edu	37	1	171303803	171303803	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
TPR	7175	broad.mit.edu	37	1	186329966	186329966	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
TPR	7175	broad.mit.edu	37	1	186330823	186330823	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYBPH	4608	broad.mit.edu	37	1	203139485	203139485	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
LAX1	54900	broad.mit.edu	37	1	203743363	203743363	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC26A9	115019	broad.mit.edu	37	1	205902176	205902177	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
EIF4G3	8672	broad.mit.edu	37	1	21221934	21221934	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
CABC1	56997	broad.mit.edu	37	1	227174193	227174193	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDC42BPA	8476	broad.mit.edu	37	1	227227863	227227863	+	Silent	SNP	C	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235972029	235972029	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237756804	237756804	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
EXTL1	2134	broad.mit.edu	37	1	26349162	26349162	+	Missense_Mutation	SNP	T	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
IQCC	55721	broad.mit.edu	37	1	32673403	32673403	+	Nonsense_Mutation	SNP	T	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
EIF3I	8668	broad.mit.edu	37	1	32690056	32690056	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAP7D1	55700	broad.mit.edu	37	1	36636690	36636690	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
KTI12	112970	broad.mit.edu	37	1	52499087	52499087	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
SCP2	6342	broad.mit.edu	37	1	53504595	53504595	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
SSBP3	23648	broad.mit.edu	37	1	54707879	54707879	+	Silent	SNP	C	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
CAMTA1	23261	broad.mit.edu	37	1	7724195	7724195	+	Nonsense_Mutation	SNP	A	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZZZ3	26009	broad.mit.edu	37	1	78098166	78098166	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
C1orf146	388649	broad.mit.edu	37	1	92709803	92709803	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC18	343099	broad.mit.edu	37	1	93683394	93683394	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDYN	5173	broad.mit.edu	37	20	1961214	1961214	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
NCOA6	23054	broad.mit.edu	37	20	33345744	33345744	+	Silent	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZHX3	23051	broad.mit.edu	37	20	39832810	39832810	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
TSHZ2	128553	broad.mit.edu	37	20	51870547	51870547	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCK1	5105	broad.mit.edu	37	20	56138776	56138776	+	Silent	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
IL10RB	3588	broad.mit.edu	37	21	34648997	34648997	+	Silent	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNJ15	3772	broad.mit.edu	37	21	39671406	39671406	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
ERG	2078	broad.mit.edu	37	21	39755633	39755633	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
GAB4	128954	broad.mit.edu	37	22	17447085	17447085	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF74	7625	broad.mit.edu	37	22	20749694	20749694	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
EWSR1	2130	broad.mit.edu	37	22	29695597	29695597	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
NF2	4771	broad.mit.edu	37	22	30057255	30057255	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
APOL1	8542	broad.mit.edu	37	22	36661781	36661781	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM83F	113828	broad.mit.edu	37	22	40415261	40415261	+	Silent	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
TCF20	6942	broad.mit.edu	37	22	42609633	42609633	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
CELSR1	9620	broad.mit.edu	37	22	46759909	46759909	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLXNB2	23654	broad.mit.edu	37	22	50718479	50718479	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
DARS	1615	broad.mit.edu	37	2	136673932	136673932	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	138320875	138320875	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZEB2	9839	broad.mit.edu	37	2	145147516	145147516	+	Silent	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNH7	90134	broad.mit.edu	37	2	163236421	163236421	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
SCN9A	6335	broad.mit.edu	37	2	167141017	167141017	+	Silent	SNP	G	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170009322	170009322	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
HNRNPA3	220988	broad.mit.edu	37	2	178082493	178082493	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179404175	179404175	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
CASP8	841	broad.mit.edu	37	2	202131238	202131238	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21228278	21228278	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21249677	21249677	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
SCLY	51540	broad.mit.edu	37	2	238999877	238999877	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
SMYD1	150572	broad.mit.edu	37	2	88387407	88387407	+	Missense_Mutation	SNP	T	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP2B2	491	broad.mit.edu	37	3	10370803	10370803	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
HSPBAP1	79663	broad.mit.edu	37	3	122459659	122459659	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNAB1	7881	broad.mit.edu	37	3	156234066	156234066	+	Silent	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
PHC3	80012	broad.mit.edu	37	3	169896709	169896709	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
PIK3CA	5290	broad.mit.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIM71	131405	broad.mit.edu	37	3	32927521	32927521	+	Silent	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC22A13	9390	broad.mit.edu	37	3	38318947	38318947	+	Silent	SNP	A	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC36	339834	broad.mit.edu	37	3	49294677	49294677	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
C4orf21	55345	broad.mit.edu	37	4	113468478	113468478	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
SH3D19	152503	broad.mit.edu	37	4	152065152	152065152	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBXW7	55294	broad.mit.edu	37	4	153247366	153247366	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
GUCY1B3	2983	broad.mit.edu	37	4	156715077	156715077	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187541654	187541654	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
NOP14	8602	broad.mit.edu	37	4	2950082	2950082	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
UGDH	7358	broad.mit.edu	37	4	39523129	39523129	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC30A9	10463	broad.mit.edu	37	4	42069148	42069148	+	Silent	SNP	T	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
UGT2B10	7365	broad.mit.edu	37	4	69692212	69692212	+	Silent	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
HSD17B13	345275	broad.mit.edu	37	4	88239530	88239530	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIM36	55521	broad.mit.edu	37	5	114499268	114499268	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC12A2	6558	broad.mit.edu	37	5	127484463	127484463	+	Silent	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
KDM3B	51780	broad.mit.edu	37	5	137756428	137756428	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHB2	56133	broad.mit.edu	37	5	140475832	140475832	+	Silent	SNP	C	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
C5orf58	133874	broad.mit.edu	37	5	169661182	169661182	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF346	23567	broad.mit.edu	37	5	176468221	176468221	+	Silent	SNP	A	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33624410	33624410	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
GTF2H2	2966	broad.mit.edu	37	5	70351252	70351252	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
JMY	133746	broad.mit.edu	37	5	78610358	78610358	+	Silent	SNP	T	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
RASGRF2	5924	broad.mit.edu	37	5	80390805	80390805	+	Silent	SNP	C	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
AKD1	221264	broad.mit.edu	37	6	109996891	109996891	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
TSPYL1	7259	broad.mit.edu	37	6	116600201	116600201	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
HIVEP1	3096	broad.mit.edu	37	6	12125108	12125108	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAP3K5	4217	broad.mit.edu	37	6	136904781	136904781	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
TBP	6908	broad.mit.edu	37	6	170871088	170871088	+	Silent	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPLD1	2822	broad.mit.edu	37	6	24472819	24472819	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
BTN3A3	10384	broad.mit.edu	37	6	26451927	26451927	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
BTN3A3	10384	broad.mit.edu	37	6	26451934	26451934	+	Silent	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
GRM4	2914	broad.mit.edu	37	6	34003916	34003916	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
TEAD3	7005	broad.mit.edu	37	6	35454253	35454253	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
BRPF3	27154	broad.mit.edu	37	6	36168658	36168658	+	Silent	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRPH2	5961	broad.mit.edu	37	6	42672298	42672298	+	Silent	SNP	G	A	A	rs61755799		TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR116	221395	broad.mit.edu	37	6	46849233	46849233	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
DST	667	broad.mit.edu	37	6	56401661	56401661	+	Silent	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
CUX1	1523	broad.mit.edu	37	7	101845239	101845239	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
CAV1	857	broad.mit.edu	37	7	116166725	116166725	+	Silent	SNP	C	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
INTS1	26173	broad.mit.edu	37	7	1513805	1513805	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHN2	1124	broad.mit.edu	37	7	29539546	29539546	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
AOAH	313	broad.mit.edu	37	7	36571798	36571798	+	Silent	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
GET4	51608	broad.mit.edu	37	7	926266	926266	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110457514	110457514	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANXA13	312	broad.mit.edu	37	8	124748098	124748098	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAB11FIP1	80223	broad.mit.edu	37	8	37732221	37732221	+	Silent	SNP	C	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
FNTA	2339	broad.mit.edu	37	8	42939973	42939973	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
MMP16	4325	broad.mit.edu	37	8	89198769	89198769	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
TDRD7	23424	broad.mit.edu	37	9	100249560	100249560	+	Silent	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
EGFL7	51162	broad.mit.edu	37	9	139563050	139563050	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
RUSC2	9853	broad.mit.edu	37	9	35547473	35547473	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
DOCK8	81704	broad.mit.edu	37	9	434792	434792	+	Silent	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
C9orf3	84909	broad.mit.edu	37	9	97767884	97767884	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
IL1RAPL2	26280	broad.mit.edu	37	X	104478538	104478538	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
RIPPLY1	92129	broad.mit.edu	37	X	106144121	106144121	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
CLDN2	9075	broad.mit.edu	37	X	106171926	106171926	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
CUL4B	8450	broad.mit.edu	37	X	119694330	119694330	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123805551	123805551	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGAP36	158763	broad.mit.edu	37	X	130219951	130219951	+	Missense_Mutation	SNP	A	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
HCFC1	3054	broad.mit.edu	37	X	153225574	153225574	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
HEPH	9843	broad.mit.edu	37	X	65486316	65486316	+	Silent	SNP	G	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
EDA	1896	broad.mit.edu	37	X	68836299	68836299	+	Silent	SNP	C	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
NFAM1	150372	broad.mit.edu	37	22	42828309	42828310	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BT-A20O-01	TCGA-BT-A20O-01									Somatic	Phase_I	Capture				Illumina GAIIx
