Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
NEBL	10529	broad.mit.edu	37	10	21108352	21108352	+	Splice_Site	SNP	C	T	T			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF25	219749	broad.mit.edu	37	10	38241395	38241395	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
CAMK2G	818	broad.mit.edu	37	10	75602237	75602237	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
DUSP13	51207	broad.mit.edu	37	10	76855531	76855531	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNMA1	3778	broad.mit.edu	37	10	78799315	78799315	+	Silent	SNP	G	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
BTAF1	9044	broad.mit.edu	37	10	93751913	93751913	+	Silent	SNP	C	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
EIF4G2	1982	broad.mit.edu	37	11	10821251	10821251	+	Silent	SNP	C	G	G			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
CYP2R1	120227	broad.mit.edu	37	11	14900872	14900872	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC1A2	6506	broad.mit.edu	37	11	35308446	35308446	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNHIT2	741	broad.mit.edu	37	11	64884085	64884085	+	Silent	SNP	G	T	T			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPH3A	22895	broad.mit.edu	37	12	113304588	113304588	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
RSRC2	65117	broad.mit.edu	37	12	122999747	122999747	+	Silent	SNP	C	T	T			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
MGP	4256	broad.mit.edu	37	12	15035937	15035937	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
NELL2	4753	broad.mit.edu	37	12	44917247	44917247	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
ITGA7	3679	broad.mit.edu	37	12	56088080	56088080	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
COPS7A	50813	broad.mit.edu	37	12	6837406	6837406	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMTC2	160335	broad.mit.edu	37	12	83289890	83289890	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
RIMKLB	57494	broad.mit.edu	37	12	8926379	8926379	+	Nonstop_Mutation	SNP	G	C	C			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
C13orf28	122258	broad.mit.edu	37	13	113053427	113053427	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHD8	57680	broad.mit.edu	37	14	21868445	21868445	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23886395	23886395	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
VPS13C	54832	broad.mit.edu	37	15	62201309	62201309	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
NEO1	4756	broad.mit.edu	37	15	73528817	73528817	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
SNX33	257364	broad.mit.edu	37	15	75942367	75942367	+	Silent	SNP	G	C	C			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
CLEC16A	23274	broad.mit.edu	37	16	11114144	11114144	+	Silent	SNP	C	T	T			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
C16orf87	388272	broad.mit.edu	37	16	46836943	46836943	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCC11	85320	broad.mit.edu	37	16	48250187	48250187	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPGRIP1L	23322	broad.mit.edu	37	16	53721797	53721797	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
NOB1	28987	broad.mit.edu	37	16	69776441	69776441	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
FANCA	2175	broad.mit.edu	37	16	89869700	89869700	+	Silent	SNP	C	G	G			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10430322	10430322	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYO15A	51168	broad.mit.edu	37	17	18082089	18082089	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0664	23277	broad.mit.edu	37	17	2598209	2598209	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0100	9703	broad.mit.edu	37	17	26943411	26943411	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
NF1	4763	broad.mit.edu	37	17	29657369	29657369	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADAM11	4185	broad.mit.edu	37	17	42855099	42855099	+	Silent	SNP	G	C	C			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
TOB1	10140	broad.mit.edu	37	17	48940623	48940623	+	Silent	SNP	T	C	C			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCA10	10349	broad.mit.edu	37	17	67148283	67148283	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
EIF4A3	9775	broad.mit.edu	37	17	78120641	78120641	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
LAMA3	3909	broad.mit.edu	37	18	21357556	21357556	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50923757	50923757	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50985745	50985745	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF532	55205	broad.mit.edu	37	18	56587489	56587489	+	Missense_Mutation	SNP	A	C	C			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
NOTCH3	4854	broad.mit.edu	37	19	15276879	15276879	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANKRD27	84079	broad.mit.edu	37	19	33117659	33117659	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0355	9710	broad.mit.edu	37	19	34791438	34791438	+	Silent	SNP	C	T	T			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
FCGBP	8857	broad.mit.edu	37	19	40395919	40395919	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRX	57716	broad.mit.edu	37	19	40902836	40902836	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRX	57716	broad.mit.edu	37	19	40903232	40903232	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
KLK12	43849	broad.mit.edu	37	19	51535219	51535219	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
LILRA2	11027	broad.mit.edu	37	19	55085555	55085555	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZSCAN1	284312	broad.mit.edu	37	19	58563891	58563891	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108145726	108145726	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
CSF1	1435	broad.mit.edu	37	1	110466096	110466096	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTCHD2	57540	broad.mit.edu	37	1	11561646	11561646	+	Silent	SNP	G	C	C			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
IFI16	3428	broad.mit.edu	37	1	159021525	159021525	+	Silent	SNP	G	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIF21B	23046	broad.mit.edu	37	1	200967639	200967639	+	Silent	SNP	G	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPRS	2058	broad.mit.edu	37	1	220162081	220162081	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAB3GAP2	25782	broad.mit.edu	37	1	220331158	220331158	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM36A	116228	broad.mit.edu	37	1	245006464	245006464	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPHA10	284656	broad.mit.edu	37	1	38197144	38197144	+	Silent	SNP	C	T	T	rs77925917	by1000genomes	TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39818703	39818703	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39818900	39818900	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
YIPF1	54432	broad.mit.edu	37	1	54332522	54332522	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAVER2	55225	broad.mit.edu	37	1	65247172	65247172	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
MMP9	4318	broad.mit.edu	37	20	44640373	44640373	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYCP2	10388	broad.mit.edu	37	20	58439419	58439419	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
C20orf20	55257	broad.mit.edu	37	20	61428556	61428556	+	Silent	SNP	G	C	C			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
C20orf20	55257	broad.mit.edu	37	20	61429948	61429948	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHODL	140578	broad.mit.edu	37	21	19632552	19632552	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
BCL2L13	23786	broad.mit.edu	37	22	18171756	18171756	+	Silent	SNP	C	T	T			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
MICAL3	57553	broad.mit.edu	37	22	18293495	18293495	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
EIF4ENIF1	56478	broad.mit.edu	37	22	31851891	31851891	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
DEPDC5	9681	broad.mit.edu	37	22	32266660	32266660	+	Missense_Mutation	SNP	A	C	C			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
H1F0	3005	broad.mit.edu	37	22	38201996	38201996	+	Missense_Mutation	SNP	A	C	C			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
MEI1	150365	broad.mit.edu	37	22	42126536	42126536	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC5A7	60482	broad.mit.edu	37	2	108626805	108626805	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179435242	179435242	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZSWIM2	151112	broad.mit.edu	37	2	187694567	187694567	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
NIF3L1	60491	broad.mit.edu	37	2	201756971	201756971	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
ECEL1	9427	broad.mit.edu	37	2	233345140	233345140	+	Silent	SNP	G	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71748031	71748031	+	Silent	SNP	G	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
SENP7	57337	broad.mit.edu	37	3	101085458	101085458	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZBTB11	27107	broad.mit.edu	37	3	101370486	101370486	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPHB3	2049	broad.mit.edu	37	3	184295484	184295484	+	Silent	SNP	C	T	T			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
MST1R	4486	broad.mit.edu	37	3	49929005	49929005	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
EDEM1	9695	broad.mit.edu	37	3	5248946	5248946	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
EDEM1	9695	broad.mit.edu	37	3	5251877	5251877	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
GRM7	2917	broad.mit.edu	37	3	7721860	7721860	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
HMGB2	3148	broad.mit.edu	37	4	174254073	174254073	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
TACC3	10460	broad.mit.edu	37	4	1746708	1746708	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
STBD1	8987	broad.mit.edu	37	4	77230916	77230916	+	Silent	SNP	C	T	T			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBXL21	26223	broad.mit.edu	37	5	135273129	135273129	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHAC1	56135	broad.mit.edu	37	5	140306671	140306671	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
KPNA5	3841	broad.mit.edu	37	6	117053364	117053364	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
HIST1H2BA	255626	broad.mit.edu	37	6	25727255	25727255	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR2H2	7932	broad.mit.edu	37	6	29556637	29556637	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
HLA-A	3105	broad.mit.edu	37	6	29913231	29913231	+	Nonstop_Mutation	SNP	G	T	T			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
BAT2	7916	broad.mit.edu	37	6	31597445	31597445	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75884895	75884895	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
DOCK4	9732	broad.mit.edu	37	7	111379265	111379265	+	Silent	SNP	G	T	T			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
FZD1	8321	broad.mit.edu	37	7	90895308	90895308	+	Silent	SNP	C	T	T			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
DENND3	22898	broad.mit.edu	37	8	142151335	142151335	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGAP39	80728	broad.mit.edu	37	8	145773665	145773665	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
NAT1	9	broad.mit.edu	37	8	18080042	18080042	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
FKBP15	23307	broad.mit.edu	37	9	115936807	115936807	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
TLR4	7099	broad.mit.edu	37	9	120475702	120475702	+	Silent	SNP	C	T	T			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
FUBP3	8939	broad.mit.edu	37	9	133499065	133499065	+	Silent	SNP	G	T	T			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
TSC1	7248	broad.mit.edu	37	9	135781358	135781358	+	Nonsense_Mutation	SNP	A	T	T			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
MLLT3	4300	broad.mit.edu	37	9	20414340	20414340	+	Silent	SNP	G	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
MLLT3	4300	broad.mit.edu	37	9	20414343	20414343	+	Silent	SNP	A	G	G			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
MLLT3	4300	broad.mit.edu	37	9	20414346	20414346	+	Silent	SNP	G	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
MLLT3	4300	broad.mit.edu	37	9	20414373	20414373	+	Silent	SNP	G	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
MLLT3	4300	broad.mit.edu	37	9	20414379	20414379	+	Silent	SNP	G	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
ALDH1B1	219	broad.mit.edu	37	9	38396624	38396624	+	Silent	SNP	C	T	T			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPRASP1	9737	broad.mit.edu	37	X	101910483	101910483	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM47A	158724	broad.mit.edu	37	X	34148732	34148732	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
WNK3	65267	broad.mit.edu	37	X	54259293	54259293	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM9B	171483	broad.mit.edu	37	X	8995957	8995957	+	Silent	SNP	C	T	T			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZCCHC8	55596	broad.mit.edu	37	12	122975027	122975027	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAVER1	125950	broad.mit.edu	37	19	10428414	10428414	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
KANK3	256949	broad.mit.edu	37	19	8398950	8398961	+	In_Frame_Del	DEL	TCGCTGTCGCCA	-	-	rs79105740		TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDXK	8566	broad.mit.edu	37	21	45161607	45161607	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
FGFRL1	53834	broad.mit.edu	37	4	1019055	1019056	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
LUC7L2	51631	broad.mit.edu	37	7	139094364	139094365	+	Frame_Shift_Ins	INS	-	AG	AG			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
SRPX	8406	broad.mit.edu	37	X	38079976	38079978	+	In_Frame_Del	DEL	GCA	-	-			TCGA-BT-A20P-01	TCGA-BT-A20P-01									Somatic	Phase_I	Capture				Illumina GAIIx
