Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
CYP2E1	1571	broad.mit.edu	37	10	135350733	135350733	+	Silent	SNP	C	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
BMI1	648	broad.mit.edu	37	10	22616891	22616891	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARMC3	219681	broad.mit.edu	37	10	23321935	23321935	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
RASGEF1A	221002	broad.mit.edu	37	10	43701441	43701441	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
ASAH2	56624	broad.mit.edu	37	10	51974561	51974561	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
DDIT4	54541	broad.mit.edu	37	10	74034918	74034918	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
CYP26A1	1592	broad.mit.edu	37	10	94836820	94836820	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA1826	84437	broad.mit.edu	37	11	105880796	105880796	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
MLL	4297	broad.mit.edu	37	11	118374132	118374132	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
MLL	4297	broad.mit.edu	37	11	118374590	118374590	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
MLL	4297	broad.mit.edu	37	11	118375131	118375131	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
BEST1	7439	broad.mit.edu	37	11	61727388	61727388	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
SMPD1	6609	broad.mit.edu	37	11	6413286	6413286	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC87	55231	broad.mit.edu	37	11	66359214	66359214	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR10A6	390093	broad.mit.edu	37	11	7949563	7949563	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
PUS7L	83448	broad.mit.edu	37	12	44124323	44124323	+	Silent	SNP	T	C	C			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC4A8	9498	broad.mit.edu	37	12	51868160	51868160	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYCBP2	23077	broad.mit.edu	37	13	77743819	77743819	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
RTN1	6252	broad.mit.edu	37	14	60212834	60212834	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
SNX22	79856	broad.mit.edu	37	15	64446590	64446590	+	Silent	SNP	G	C	C			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
SNX33	257364	broad.mit.edu	37	15	75941596	75941596	+	Missense_Mutation	SNP	T	G	G			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
CPPED1	55313	broad.mit.edu	37	16	12758794	12758794	+	Silent	SNP	C	G	G			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
IFT140	9742	broad.mit.edu	37	16	1616196	1616196	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
C16orf88	400506	broad.mit.edu	37	16	19726111	19726111	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
C16orf59	80178	broad.mit.edu	37	16	2510687	2510687	+	Silent	SNP	C	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHD9	80205	broad.mit.edu	37	16	53272307	53272307	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
IL34	146433	broad.mit.edu	37	16	70693984	70693984	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
HPR	3250	broad.mit.edu	37	16	72110371	72110371	+	Silent	SNP	C	G	G			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
NCOR1	9611	broad.mit.edu	37	17	16022773	16022773	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPN2	22905	broad.mit.edu	37	17	19216560	19216560	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
RNF112	7732	broad.mit.edu	37	17	19319463	19319463	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
KSR1	8844	broad.mit.edu	37	17	25936221	25936221	+	Splice_Site	SNP	G	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
UBTF	7343	broad.mit.edu	37	17	42289089	42289089	+	Missense_Mutation	SNP	T	G	G			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA1267	284058	broad.mit.edu	37	17	44109507	44109507	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL1A1	1277	broad.mit.edu	37	17	48275121	48275121	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
C17orf81	23587	broad.mit.edu	37	17	7162148	7162148	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
C17orf81	23587	broad.mit.edu	37	17	7162193	7162193	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
POLI	11201	broad.mit.edu	37	18	51818253	51818253	+	Nonsense_Mutation	SNP	C	T	T	rs56152401		TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF516	9658	broad.mit.edu	37	18	74091604	74091604	+	Silent	SNP	G	A	A			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
LPAR2	9170	broad.mit.edu	37	19	19737749	19737749	+	Silent	SNP	G	A	A			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF573	126231	broad.mit.edu	37	19	38229523	38229523	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRPM4	54795	broad.mit.edu	37	19	49713574	49713574	+	Silent	SNP	C	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
LENG8	114823	broad.mit.edu	37	19	54967251	54967251	+	Silent	SNP	T	G	G			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55329821	55329821	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
NLRP8	126205	broad.mit.edu	37	19	56466176	56466176	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
C19orf21	126353	broad.mit.edu	37	19	763566	763566	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
ELAVL1	1994	broad.mit.edu	37	19	8046039	8046039	+	Silent	SNP	G	A	A			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDC14A	8556	broad.mit.edu	37	1	100920981	100920981	+	Silent	SNP	C	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
C1orf161	126868	broad.mit.edu	37	1	116670903	116670903	+	Silent	SNP	G	A	A			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
VPS13D	55187	broad.mit.edu	37	1	12422812	12422812	+	Missense_Mutation	SNP	A	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144923818	144923818	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM63A	55793	broad.mit.edu	37	1	150974829	150974829	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
THBS3	7059	broad.mit.edu	37	1	155168291	155168291	+	Silent	SNP	C	A	A			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
IQGAP3	128239	broad.mit.edu	37	1	156503868	156503868	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
OLFML2B	25903	broad.mit.edu	37	1	161968053	161968053	+	Missense_Mutation	SNP	T	A	A			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
C1orf144	26099	broad.mit.edu	37	1	16721628	16721628	+	Silent	SNP	G	A	A			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16918403	16918403	+	Silent	SNP	G	C	C			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
TNFSF4	7292	broad.mit.edu	37	1	173176222	173176222	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186113383	186113383	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
TPR	7175	broad.mit.edu	37	1	186324850	186324850	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
UBR4	23352	broad.mit.edu	37	1	19441918	19441918	+	Silent	SNP	C	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201060841	201060841	+	Silent	SNP	G	C	C			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTPN7	5778	broad.mit.edu	37	1	202124738	202124738	+	Splice_Site	SNP	C	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
C4BPA	722	broad.mit.edu	37	1	207300089	207300089	+	Missense_Mutation	SNP	T	A	A			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTPN14	5784	broad.mit.edu	37	1	214557171	214557171	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
H3F3A	3020	broad.mit.edu	37	1	226252162	226252162	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
PSEN2	5664	broad.mit.edu	37	1	227071519	227071519	+	Silent	SNP	G	A	A			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPIE	10450	broad.mit.edu	37	1	40214727	40214727	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
SNRPB2	6629	broad.mit.edu	37	20	16719531	16719531	+	Nonsense_Mutation	SNP	C	G	G			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
CEP250	11190	broad.mit.edu	37	20	34051427	34051427	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
BRWD1	54014	broad.mit.edu	37	21	40604198	40604198	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
KRTAP10-6	386674	broad.mit.edu	37	21	46011400	46011400	+	Silent	SNP	G	A	A			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
GNAZ	2781	broad.mit.edu	37	22	23465561	23465561	+	Silent	SNP	C	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZC3H7B	23264	broad.mit.edu	37	22	41739424	41739424	+	Silent	SNP	C	A	A			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
HDAC10	83933	broad.mit.edu	37	22	50687787	50687787	+	Silent	SNP	G	A	A			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR39	2863	broad.mit.edu	37	2	133174772	133174772	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141272335	141272335	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
SP3	6670	broad.mit.edu	37	2	174783487	174783487	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179638034	179638034	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189953486	189953486	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANKAR	150709	broad.mit.edu	37	2	190593544	190593544	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
GTF3C3	9330	broad.mit.edu	37	2	197639909	197639909	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
GGCX	2677	broad.mit.edu	37	2	85785670	85785670	+	Silent	SNP	C	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
SGEF	26084	broad.mit.edu	37	3	153840100	153840100	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
VPS8	23355	broad.mit.edu	37	3	184557485	184557485	+	Splice_Site	SNP	G	A	A			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
TFRC	7037	broad.mit.edu	37	3	195794923	195794923	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC36	339834	broad.mit.edu	37	3	49249260	49249260	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC36	339834	broad.mit.edu	37	3	49249266	49249266	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
MST1	4485	broad.mit.edu	37	3	49723526	49723526	+	Silent	SNP	G	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
DOCK3	1795	broad.mit.edu	37	3	51393912	51393912	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGEF3	50650	broad.mit.edu	37	3	56787589	56787589	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARL13B	200894	broad.mit.edu	37	3	93761858	93761858	+	Splice_Site	SNP	G	C	C			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARL13B	200894	broad.mit.edu	37	3	93761880	93761880	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
TET2	54790	broad.mit.edu	37	4	106156496	106156496	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
TET2	54790	broad.mit.edu	37	4	106156625	106156625	+	Nonsense_Mutation	SNP	C	G	G			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAPGEF2	9693	broad.mit.edu	37	4	160253617	160253617	+	Silent	SNP	C	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
CPE	1363	broad.mit.edu	37	4	166414359	166414359	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
UFSP2	55325	broad.mit.edu	37	4	186334999	186334999	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
HTRA3	94031	broad.mit.edu	37	4	8288305	8288305	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
METAP1	23173	broad.mit.edu	37	4	99982412	99982412	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHA6	56142	broad.mit.edu	37	5	140209470	140209470	+	Silent	SNP	C	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
IL17B	27190	broad.mit.edu	37	5	148754143	148754143	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYNPO	11346	broad.mit.edu	37	5	150028061	150028061	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
NIPBL	25836	broad.mit.edu	37	5	36985880	36985880	+	Silent	SNP	A	G	G			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129691106	129691106	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152668238	152668238	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	161007642	161007642	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA1949	170954	broad.mit.edu	37	6	30653297	30653297	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
RNF5	6048	broad.mit.edu	37	6	32148014	32148014	+	Silent	SNP	C	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70875870	70875870	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
B3GAT2	135152	broad.mit.edu	37	6	71665793	71665793	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
TBXAS1	6916	broad.mit.edu	37	7	139636073	139636073	+	Silent	SNP	G	A	A			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF777	27153	broad.mit.edu	37	7	149129112	149129112	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
CRHR2	1395	broad.mit.edu	37	7	30721547	30721547	+	Silent	SNP	G	C	C			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
MRPS17	51373	broad.mit.edu	37	7	56022649	56022649	+	Silent	SNP	G	A	A			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3326258	3326258	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0368	23392	broad.mit.edu	37	9	114152334	114152334	+	Missense_Mutation	SNP	A	C	C			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
USP20	10868	broad.mit.edu	37	9	132614875	132614875	+	Missense_Mutation	SNP	T	G	G			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM120A	23196	broad.mit.edu	37	9	96320268	96320268	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
WBP5	51186	broad.mit.edu	37	X	102612724	102612724	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
SRPK3	26576	broad.mit.edu	37	X	153049816	153049816	+	Silent	SNP	C	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
IL2RG	3561	broad.mit.edu	37	X	70331308	70331308	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
CASKIN2	57513	broad.mit.edu	37	17	73498817	73498819	+	In_Frame_Del	DEL	AGG	-	-			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
ELF3	1999	broad.mit.edu	37	1	201981870	201981871	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
CAMSAP1	157922	broad.mit.edu	37	9	138715799	138715800	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BT-A20Q-01	TCGA-BT-A20Q-01									Somatic	Phase_I	Capture				Illumina GAIIx
