Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
CCDC147	159686	broad.mit.edu	37	10	106139898	106139898	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108338932	108338932	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
TACC2	10579	broad.mit.edu	37	10	123847305	123847305	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM175B	23172	broad.mit.edu	37	10	126505169	126505169	+	Nonsense_Mutation	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM107B	83641	broad.mit.edu	37	10	14572359	14572359	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGAP12	94134	broad.mit.edu	37	10	32197217	32197217	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM13C	220965	broad.mit.edu	37	10	61022288	61022288	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRF1	5551	broad.mit.edu	37	10	72360409	72360409	+	Missense_Mutation	SNP	T	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ITIH2	3698	broad.mit.edu	37	10	7785117	7785117	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	84738833	84738833	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
LDB3	11155	broad.mit.edu	37	10	88446915	88446915	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
IFIT3	3437	broad.mit.edu	37	10	91099496	91099496	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZC3H12C	85463	broad.mit.edu	37	11	110035800	110035800	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
TREH	11181	broad.mit.edu	37	11	118529682	118529682	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDE3B	5140	broad.mit.edu	37	11	14825541	14825541	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
UEVLD	55293	broad.mit.edu	37	11	18586472	18586472	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
CAT	847	broad.mit.edu	37	11	34492549	34492549	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIM6-TRIM34	445372	broad.mit.edu	37	11	5664543	5664543	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR9Q2	219957	broad.mit.edu	37	11	57958523	57958523	+	Silent	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR5B2	390190	broad.mit.edu	37	11	58189810	58189810	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC86	79080	broad.mit.edu	37	11	60609623	60609623	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC22A10	387775	broad.mit.edu	37	11	63066993	63066993	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
KLC2	64837	broad.mit.edu	37	11	66030506	66030506	+	Silent	SNP	C	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
CD248	57124	broad.mit.edu	37	11	66082600	66082600	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYT12	91683	broad.mit.edu	37	11	66816082	66816082	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
KDM2A	22992	broad.mit.edu	37	11	67021049	67021049	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
NUMA1	4926	broad.mit.edu	37	11	71719867	71719867	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
NUMA1	4926	broad.mit.edu	37	11	71728852	71728852	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAP6	4135	broad.mit.edu	37	11	75298211	75298211	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYO7A	4647	broad.mit.edu	37	11	76873170	76873170	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83770465	83770465	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
BTBD11	121551	broad.mit.edu	37	12	108008937	108008937	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
SDS	10993	broad.mit.edu	37	12	113830871	113830871	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
EP400	57634	broad.mit.edu	37	12	132547087	132547087	+	Silent	SNP	G	A	A	rs12366766		TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLEKHA5	54477	broad.mit.edu	37	12	19407999	19407999	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYT10	341359	broad.mit.edu	37	12	33532824	33532824	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR10AD1	121275	broad.mit.edu	37	12	48596451	48596451	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
KRT74	121391	broad.mit.edu	37	12	52967248	52967248	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
MDM2	4193	broad.mit.edu	37	12	69207366	69207366	+	Silent	SNP	A	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70986212	70986212	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
C1RL	51279	broad.mit.edu	37	12	7249214	7249214	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
RASSF9	9182	broad.mit.edu	37	12	86199359	86199359	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
USP44	84101	broad.mit.edu	37	12	95918479	95918479	+	Silent	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
LIG4	3981	broad.mit.edu	37	13	108861189	108861189	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
MCF2L	23263	broad.mit.edu	37	13	113730363	113730363	+	Silent	SNP	T	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDC16	8881	broad.mit.edu	37	13	115008757	115008757	+	Silent	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
PARP4	143	broad.mit.edu	37	13	25074482	25074482	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM48A	55578	broad.mit.edu	37	13	37618294	37618294	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
FNDC3A	22862	broad.mit.edu	37	13	49752710	49752710	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCC4	10257	broad.mit.edu	37	13	95726579	95726579	+	Splice_Site	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAJC3	5611	broad.mit.edu	37	13	96361561	96361561	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
PACS2	23241	broad.mit.edu	37	14	105859633	105859633	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
RNASE9	390443	broad.mit.edu	37	14	21025034	21025034	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
FLJ10357	55701	broad.mit.edu	37	14	21556227	21556227	+	Silent	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
AKAP6	9472	broad.mit.edu	37	14	32902953	32902953	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
FOXN3	1112	broad.mit.edu	37	14	89629013	89629013	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
CALM1	801	broad.mit.edu	37	14	90867659	90867659	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94088400	94088400	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
TCL1B	9623	broad.mit.edu	37	14	96152883	96152883	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
OTUD7A	161725	broad.mit.edu	37	15	31862286	31862286	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
TGM5	9333	broad.mit.edu	37	15	43552715	43552715	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC33	80125	broad.mit.edu	37	15	74588272	74588272	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
SH3GL3	6457	broad.mit.edu	37	15	84233946	84233946	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACAN	176	broad.mit.edu	37	15	89379446	89379446	+	Silent	SNP	T	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
BAIAP3	8938	broad.mit.edu	37	16	1398294	1398294	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
MKL2	57496	broad.mit.edu	37	16	14340888	14340888	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
PALB2	79728	broad.mit.edu	37	16	23646501	23646501	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP2A1	487	broad.mit.edu	37	16	28893844	28893844	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
CD19	930	broad.mit.edu	37	16	28950083	28950083	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPP4C	5531	broad.mit.edu	37	16	30092610	30092610	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
CREBBP	1387	broad.mit.edu	37	16	3820792	3820792	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
CREBBP	1387	broad.mit.edu	37	16	3820952	3820952	+	Silent	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ITFG1	81533	broad.mit.edu	37	16	47347638	47347638	+	Splice_Site	SNP	A	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
GLYR1	84656	broad.mit.edu	37	16	4862198	4862198	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
RBL2	5934	broad.mit.edu	37	16	53504333	53504333	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
FTO	79068	broad.mit.edu	37	16	53878094	53878094	+	Missense_Mutation	SNP	C	T	T	rs76762929	by1000genomes	TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
IRX3	79191	broad.mit.edu	37	16	54319259	54319259	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
DOK4	55715	broad.mit.edu	37	16	57509424	57509424	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
AP1G1	164	broad.mit.edu	37	16	71805129	71805129	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
PMFBP1	83449	broad.mit.edu	37	16	72159145	72159145	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
RHBDL1	9028	broad.mit.edu	37	16	726483	726483	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
RHBDL1	9028	broad.mit.edu	37	16	726497	726497	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
NECAB2	54550	broad.mit.edu	37	16	84028251	84028251	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRRC50	123872	broad.mit.edu	37	16	84182710	84182710	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10219314	10219314	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYO18A	399687	broad.mit.edu	37	17	27437053	27437053	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31344625	31344625	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRPV3	162514	broad.mit.edu	37	17	3433367	3433367	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ERBB2	2064	broad.mit.edu	37	17	37872839	37872839	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
NBR1	4077	broad.mit.edu	37	17	41355748	41355748	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
NBR1	4077	broad.mit.edu	37	17	41355760	41355760	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
HEXIM1	10614	broad.mit.edu	37	17	43227360	43227360	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
DLX3	1747	broad.mit.edu	37	17	48070801	48070801	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
HLF	3131	broad.mit.edu	37	17	53345431	53345431	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRRC37A3	374819	broad.mit.edu	37	17	62865278	62865278	+	Silent	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCA5	23461	broad.mit.edu	37	17	67270112	67270112	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPS2	2874	broad.mit.edu	37	17	7217458	7217458	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
GGA3	23163	broad.mit.edu	37	17	73235955	73235955	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
FSCN2	25794	broad.mit.edu	37	17	79496104	79496104	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAB40B	10966	broad.mit.edu	37	17	80616446	80616446	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHMP1B	57132	broad.mit.edu	37	18	11851604	11851604	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPRD1A	55197	broad.mit.edu	37	18	33607165	33607165	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYO5B	4645	broad.mit.edu	37	18	47363122	47363122	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
TYMS	7298	broad.mit.edu	37	18	670747	670747	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
TYMS	7298	broad.mit.edu	37	18	670754	670754	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
QTRT1	81890	broad.mit.edu	37	19	10812162	10812162	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
SMARCA4	6597	broad.mit.edu	37	19	11123707	11123707	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
REXO1	57455	broad.mit.edu	37	19	1818820	1818820	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF146	7705	broad.mit.edu	37	19	36728009	36728009	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACTN4	81	broad.mit.edu	37	19	39214966	39214966	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPTBN4	57731	broad.mit.edu	37	19	41008156	41008156	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
PSG2	5670	broad.mit.edu	37	19	43575862	43575862	+	Silent	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF230	7773	broad.mit.edu	37	19	44514437	44514437	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF180	7733	broad.mit.edu	37	19	44981167	44981167	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
DMPK	1760	broad.mit.edu	37	19	46275904	46275904	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
PNMAL1	55228	broad.mit.edu	37	19	46973831	46973831	+	Silent	SNP	C	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
TICAM1	148022	broad.mit.edu	37	19	4816641	4816641	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
TICAM1	148022	broad.mit.edu	37	19	4816911	4816911	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYT3	84258	broad.mit.edu	37	19	51129249	51129249	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
SIGLEC10	89790	broad.mit.edu	37	19	51914402	51914402	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
NLRP2	55655	broad.mit.edu	37	19	55494635	55494635	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
NLRP9	338321	broad.mit.edu	37	19	56223188	56223188	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
NLRP4	147945	broad.mit.edu	37	19	56369819	56369819	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF471	57573	broad.mit.edu	37	19	57027736	57027736	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
INSR	3643	broad.mit.edu	37	19	7267597	7267597	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
SNAPC2	6618	broad.mit.edu	37	19	7986934	7986934	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNA10	3744	broad.mit.edu	37	1	111060995	111060995	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
RSBN1	54665	broad.mit.edu	37	1	114310974	114310974	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTF2	8458	broad.mit.edu	37	1	117633211	117633211	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPRD2	23248	broad.mit.edu	37	1	150443792	150443792	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ASH1L	55870	broad.mit.edu	37	1	155491121	155491121	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
NES	10763	broad.mit.edu	37	1	156641159	156641159	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
CD1D	912	broad.mit.edu	37	1	158151886	158151886	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
POU2F1	5451	broad.mit.edu	37	1	167381395	167381395	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176903363	176903364	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
NCF2	4688	broad.mit.edu	37	1	183542321	183542321	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
C1orf26	54823	broad.mit.edu	37	1	185144079	185144079	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
CRB1	23418	broad.mit.edu	37	1	197390429	197390429	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
C1orf107	27042	broad.mit.edu	37	1	210006542	210006542	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
EIF4G3	8672	broad.mit.edu	37	1	21226289	21226289	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ESRRG	2104	broad.mit.edu	37	1	216850784	216850784	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
MARK1	4139	broad.mit.edu	37	1	220825393	220825393	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237875065	237875065	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	240990424	240990424	+	Missense_Mutation	SNP	T	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLD5	200150	broad.mit.edu	37	1	242428713	242428713	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF124	7678	broad.mit.edu	37	1	247323048	247323048	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF496	84838	broad.mit.edu	37	1	247464253	247464253	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
PUM1	9698	broad.mit.edu	37	1	31478834	31478834	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
DFFB	1677	broad.mit.edu	37	1	3800260	3800260	+	Silent	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
GJA9	81025	broad.mit.edu	37	1	39341511	39341511	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
CACHD1	57685	broad.mit.edu	37	1	65145288	65145288	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70488897	70488897	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZZZ3	26009	broad.mit.edu	37	1	78045314	78045314	+	Splice_Site	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
AGRN	375790	broad.mit.edu	37	1	957838	957838	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
RIN2	54453	broad.mit.edu	37	20	19941346	19941346	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
EMILIN3	90187	broad.mit.edu	37	20	39990777	39990777	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
NCOA3	8202	broad.mit.edu	37	20	46265061	46265061	+	Nonsense_Mutation	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
CSE1L	1434	broad.mit.edu	37	20	47691370	47691370	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
LAMA5	3911	broad.mit.edu	37	20	60891982	60891982	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
MORC3	23515	broad.mit.edu	37	21	37710178	37710178	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
PIGP	51227	broad.mit.edu	37	21	38444858	38444858	+	Silent	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL18A1	80781	broad.mit.edu	37	21	46925183	46925183	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
TXNRD2	10587	broad.mit.edu	37	22	19864662	19864662	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARVCF	421	broad.mit.edu	37	22	19959927	19959927	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
RTDR1	27156	broad.mit.edu	37	22	23482515	23482515	+	Silent	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
TBC1D10A	83874	broad.mit.edu	37	22	30722669	30722669	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
CACNG2	10369	broad.mit.edu	37	22	36960929	36960929	+	Silent	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPL3	6122	broad.mit.edu	37	22	39708981	39708981	+	Silent	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
TNFRSF13C	115650	broad.mit.edu	37	22	42321519	42321519	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
A4GALT	53947	broad.mit.edu	37	22	43089310	43089310	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
BIK	638	broad.mit.edu	37	22	43520163	43520163	+	Silent	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
EFCAB6	64800	broad.mit.edu	37	22	43972201	43972201	+	Silent	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
GTSE1	51512	broad.mit.edu	37	22	46725395	46725395	+	Silent	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
AFF3	3899	broad.mit.edu	37	2	100210124	100210124	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
NPAS2	4862	broad.mit.edu	37	2	101580599	101580599	+	Silent	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
POLR2D	5433	broad.mit.edu	37	2	128605685	128605685	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
LCT	3938	broad.mit.edu	37	2	136570082	136570082	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
PXDN	7837	broad.mit.edu	37	2	1653407	1653407	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
SCN1A	6323	broad.mit.edu	37	2	166848324	166848324	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179584463	179584463	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
RFTN2	130132	broad.mit.edu	37	2	198498722	198498722	+	Splice_Site	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZDBF2	57683	broad.mit.edu	37	2	207175392	207175392	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLCD4	84812	broad.mit.edu	37	2	219483480	219483480	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTPRN	5798	broad.mit.edu	37	2	220161229	220161229	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
DOCK10	55619	broad.mit.edu	37	2	225670030	225670030	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPHKAP	80309	broad.mit.edu	37	2	228881535	228881535	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR55	9290	broad.mit.edu	37	2	231775157	231775157	+	Missense_Mutation	SNP	T	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNJ13	3769	broad.mit.edu	37	2	233635859	233635859	+	Missense_Mutation	SNP	C	A	A	rs77818131	byFrequency;by1000genomes	TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
HJURP	55355	broad.mit.edu	37	2	234749700	234749700	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238277457	238277457	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
HDAC4	9759	broad.mit.edu	37	2	240036766	240036766	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
PASK	23178	broad.mit.edu	37	2	242066101	242066101	+	Silent	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
PASK	23178	broad.mit.edu	37	2	242066280	242066280	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
HDLBP	3069	broad.mit.edu	37	2	242192385	242192385	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ASXL2	55252	broad.mit.edu	37	2	25978935	25978935	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ASXL2	55252	broad.mit.edu	37	2	25994376	25994376	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ASXL2	55252	broad.mit.edu	37	2	25994388	25994388	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
OTOF	9381	broad.mit.edu	37	2	26684967	26684967	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAJC5G	285126	broad.mit.edu	37	2	27501157	27501157	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
FEZ2	9637	broad.mit.edu	37	2	36808439	36808439	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
THADA	63892	broad.mit.edu	37	2	43458382	43458382	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
WBP1	23559	broad.mit.edu	37	2	74686773	74686773	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRRTM1	347730	broad.mit.edu	37	2	80529770	80529770	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80646667	80646667	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
VWA3B	200403	broad.mit.edu	37	2	98846623	98846623	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZDHHC23	254887	broad.mit.edu	37	3	113673211	113673211	+	Silent	SNP	C	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
PARP9	83666	broad.mit.edu	37	3	122247537	122247537	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
HEG1	57493	broad.mit.edu	37	3	124738228	124738228	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC48	79825	broad.mit.edu	37	3	128753034	128753034	+	Silent	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
COPG	22820	broad.mit.edu	37	3	128982840	128982840	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
C3orf37	56941	broad.mit.edu	37	3	129023617	129023617	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP2C1	27032	broad.mit.edu	37	3	130688229	130688229	+	Silent	SNP	C	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZFYVE20	64145	broad.mit.edu	37	3	15124021	15124021	+	Silent	SNP	G	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ECE2	9718	broad.mit.edu	37	3	184009861	184009861	+	Silent	SNP	G	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPHB3	2049	broad.mit.edu	37	3	184289145	184289145	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0226	9711	broad.mit.edu	37	3	197408132	197408132	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
OSBPL10	114884	broad.mit.edu	37	3	31710301	31710301	+	Silent	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF167	55888	broad.mit.edu	37	3	44612209	44612209	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTH1R	5745	broad.mit.edu	37	3	46939420	46939420	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
P4HTM	54681	broad.mit.edu	37	3	49043565	49043565	+	Silent	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
LAMB2	3913	broad.mit.edu	37	3	49161498	49161498	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
NISCH	11188	broad.mit.edu	37	3	52526262	52526262	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLMAP	7871	broad.mit.edu	37	3	57827095	57827095	+	Nonsense_Mutation	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
C4orf17	84103	broad.mit.edu	37	4	100463168	100463168	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC39A8	64116	broad.mit.edu	37	4	103228665	103228665	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA1109	84162	broad.mit.edu	37	4	123192861	123192861	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
NR3C2	4306	broad.mit.edu	37	4	149357276	149357276	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
BST1	683	broad.mit.edu	37	4	15716979	15716979	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM198B	51313	broad.mit.edu	37	4	159092463	159092463	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAPGEF2	9693	broad.mit.edu	37	4	160273906	160273906	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
FGFR3	2261	broad.mit.edu	37	4	1806119	1806119	+	Missense_Mutation	SNP	G	A	A	rs28931614		TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
HELT	391723	broad.mit.edu	37	4	185941474	185941474	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIML2	205860	broad.mit.edu	37	4	189026057	189026057	+	Silent	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
WHSC1	7468	broad.mit.edu	37	4	1957529	1957529	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
STIM2	57620	broad.mit.edu	37	4	26959236	26959236	+	Silent	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZBTB49	166793	broad.mit.edu	37	4	4317400	4317400	+	Missense_Mutation	SNP	A	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
GABRB1	2560	broad.mit.edu	37	4	47322172	47322172	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
C4orf14	84273	broad.mit.edu	37	4	57829697	57829697	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66230766	66230766	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMPRSS11F	389208	broad.mit.edu	37	4	68930646	68930646	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRR16	51334	broad.mit.edu	37	5	120021694	120021694	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC22A4	6583	broad.mit.edu	37	5	131679478	131679478	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
BRD8	10902	broad.mit.edu	37	5	137506551	137506551	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHA12	56137	broad.mit.edu	37	5	140256020	140256020	+	Silent	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHB2	56133	broad.mit.edu	37	5	140476448	140476448	+	Silent	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHB3	56132	broad.mit.edu	37	5	140482301	140482301	+	Silent	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHB9	56127	broad.mit.edu	37	5	140567183	140567183	+	Silent	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHB11	56125	broad.mit.edu	37	5	140581324	140581324	+	Missense_Mutation	SNP	A	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHGA4	56111	broad.mit.edu	37	5	140736303	140736303	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHGC3	5098	broad.mit.edu	37	5	140856170	140856170	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPINK9	643394	broad.mit.edu	37	5	147715197	147715197	+	Silent	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
CSF1R	1436	broad.mit.edu	37	5	149437110	149437110	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBXW11	23291	broad.mit.edu	37	5	171327031	171327031	+	Silent	SNP	C	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
C5orf25	375484	broad.mit.edu	37	5	175717801	175717801	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
TSPAN17	26262	broad.mit.edu	37	5	176078805	176078805	+	Silent	SNP	C	A	A	rs35207938	byFrequency;by1000genomes	TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
NSD1	64324	broad.mit.edu	37	5	176721219	176721219	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
GRM6	2916	broad.mit.edu	37	5	178410024	178410024	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
AMACR	23600	broad.mit.edu	37	5	34008107	34008107	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
WDR70	55100	broad.mit.edu	37	5	37605251	37605251	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBXO4	26272	broad.mit.edu	37	5	41929935	41929935	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
HMGCS1	3157	broad.mit.edu	37	5	43295898	43295898	+	Silent	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
NAIP	4671	broad.mit.edu	37	5	70308614	70308614	+	Silent	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANKRD34B	340120	broad.mit.edu	37	5	79855427	79855427	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM174A	345757	broad.mit.edu	37	5	99897787	99897787	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
BVES	11149	broad.mit.edu	37	6	105581450	105581450	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRDM1	639	broad.mit.edu	37	6	106553146	106553146	+	Silent	SNP	C	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
HIVEP1	3096	broad.mit.edu	37	6	12164682	12164682	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
THEMIS	387357	broad.mit.edu	37	6	128040891	128040891	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
STXBP5	134957	broad.mit.edu	37	6	147648368	147648368	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ULBP3	79465	broad.mit.edu	37	6	150387242	150387242	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
C6orf97	80129	broad.mit.edu	37	6	151914325	151914325	+	Missense_Mutation	SNP	C	A	A	rs113968720		TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
TFB1M	51106	broad.mit.edu	37	6	155579176	155579176	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
HIST1H2BL	8340	broad.mit.edu	37	6	27775562	27775562	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZFP57	346171	broad.mit.edu	37	6	29641454	29641454	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDKN1A	1026	broad.mit.edu	37	6	36652060	36652060	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
NFYA	4800	broad.mit.edu	37	6	41051850	41051850	+	Silent	SNP	C	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
CUL9	23113	broad.mit.edu	37	6	43155601	43155601	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
C6orf108	10591	broad.mit.edu	37	6	43194090	43194090	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
TJAP1	93643	broad.mit.edu	37	6	43472671	43472671	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
IMPG1	3617	broad.mit.edu	37	6	76720899	76720899	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
GABRR2	2570	broad.mit.edu	37	6	89974215	89974215	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
TSC22D4	81628	broad.mit.edu	37	7	100075057	100075057	+	Missense_Mutation	SNP	T	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC12A9	56996	broad.mit.edu	37	7	100458882	100458882	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
DOCK4	9732	broad.mit.edu	37	7	111422961	111422961	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
TFEC	22797	broad.mit.edu	37	7	115580778	115580778	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
POT1	25913	broad.mit.edu	37	7	124475365	124475365	+	Silent	SNP	T	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
TAS2R39	259285	broad.mit.edu	37	7	142880972	142880972	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF786	136051	broad.mit.edu	37	7	148769089	148769089	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
SSPO	23145	broad.mit.edu	37	7	149508033	149508033	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
SSPO	23145	broad.mit.edu	37	7	149509070	149509070	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	152027735	152027735	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154561137	154561137	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
NUPL2	11097	broad.mit.edu	37	7	23236339	23236339	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
RP9	6100	broad.mit.edu	37	7	33139017	33139017	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
OGDH	4967	broad.mit.edu	37	7	44739835	44739835	+	Silent	SNP	A	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48314904	48314904	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48315084	48315084	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
AKAP9	10142	broad.mit.edu	37	7	91630326	91630326	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBXO43	286151	broad.mit.edu	37	8	101153669	101153669	+	Silent	SNP	T	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
SNX31	169166	broad.mit.edu	37	8	101624228	101624228	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
EIF3E	3646	broad.mit.edu	37	8	109228656	109228656	+	Silent	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
EXT1	2131	broad.mit.edu	37	8	118816983	118816983	+	Missense_Mutation	SNP	T	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
TIGD5	84948	broad.mit.edu	37	8	144681868	144681868	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
INTS10	55174	broad.mit.edu	37	8	19690831	19690831	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADAM28	10863	broad.mit.edu	37	8	24178763	24178763	+	Silent	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPHX2	2053	broad.mit.edu	37	8	27398124	27398124	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAK16	84549	broad.mit.edu	37	8	33346598	33346598	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAB11FIP1	80223	broad.mit.edu	37	8	37729146	37729146	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
FGFR1	2260	broad.mit.edu	37	8	38271717	38271717	+	Silent	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
EFCAB1	79645	broad.mit.edu	37	8	49643172	49643172	+	Silent	SNP	G	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	69046488	69046488	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77767490	77767490	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
CTNNAL1	8727	broad.mit.edu	37	9	111741687	111741687	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ENTPD2	954	broad.mit.edu	37	9	139945381	139945381	+	Silent	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ENTPD2	954	broad.mit.edu	37	9	139945964	139945964	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
GRIN1	2902	broad.mit.edu	37	9	140058079	140058079	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
GNE	10020	broad.mit.edu	37	9	36229084	36229084	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
JAK2	3717	broad.mit.edu	37	9	5089767	5089767	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRPM3	80036	broad.mit.edu	37	9	73233873	73233873	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ECM2	1842	broad.mit.edu	37	9	95274343	95274343	+	Silent	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
CLCN4	1183	broad.mit.edu	37	X	10176604	10176604	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
AIFM1	9131	broad.mit.edu	37	X	129267414	129267414	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
RBMX2	51634	broad.mit.edu	37	X	129537824	129537824	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
USP26	83844	broad.mit.edu	37	X	132161712	132161712	+	Silent	SNP	C	T	T			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
GDI1	2664	broad.mit.edu	37	X	153665607	153665607	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARSF	416	broad.mit.edu	37	X	3002367	3002367	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
TOPBP1	11073	broad.mit.edu	37	3	133341981	133341982	+	Frame_Shift_Del	DEL	TT	-	-			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
C9orf150	286343	broad.mit.edu	37	9	12775861	12775862	+	In_Frame_Ins	INS	-	GGCGGCGGC	GGCGGCGGC	rs71793083		TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
KDM6A	7403	broad.mit.edu	37	X	44820575	44820575	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BT-A20T-01	TCGA-BT-A20T-01									Somatic	Phase_I	Capture				Illumina GAIIx
