Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
SMC3	9126	broad.mit.edu	37	10	112343991	112343991	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGAP12	94134	broad.mit.edu	37	10	32098165	32098165	+	Silent	SNP	G	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAPK8	5599	broad.mit.edu	37	10	49633981	49633981	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAPK8	5599	broad.mit.edu	37	10	49634089	49634089	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDK1	983	broad.mit.edu	37	10	62553724	62553724	+	Silent	SNP	G	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMEM26	219623	broad.mit.edu	37	10	63170341	63170341	+	Silent	SNP	G	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACTA2	59	broad.mit.edu	37	10	90697972	90697972	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
GUCY1A2	2977	broad.mit.edu	37	11	106681029	106681029	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATM	472	broad.mit.edu	37	11	108115627	108115627	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
PKNOX2	63876	broad.mit.edu	37	11	125281675	125281675	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
NUP98	4928	broad.mit.edu	37	11	3716747	3716747	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
GANAB	23193	broad.mit.edu	37	11	62393546	62393547	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATL3	25923	broad.mit.edu	37	11	63403040	63403040	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
FRMD8	83786	broad.mit.edu	37	11	65161533	65161533	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
C11orf80	79703	broad.mit.edu	37	11	66581356	66581356	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF214	7761	broad.mit.edu	37	11	7022446	7022446	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
RNF169	254225	broad.mit.edu	37	11	74547657	74547657	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
C11orf30	56946	broad.mit.edu	37	11	76175124	76175124	+	Silent	SNP	G	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYBPC1	4604	broad.mit.edu	37	12	102043044	102043044	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
HIP1R	9026	broad.mit.edu	37	12	123340550	123340550	+	Silent	SNP	G	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
MRPS35	60488	broad.mit.edu	37	12	27877118	27877118	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
IPO8	10526	broad.mit.edu	37	12	30814158	30814158	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
IRAK4	51135	broad.mit.edu	37	12	44166804	44166804	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
TUBA3C	7278	broad.mit.edu	37	13	19748219	19748219	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDH8	5100	broad.mit.edu	37	13	53420356	53420356	+	Missense_Mutation	SNP	A	C	C			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
FARP1	10160	broad.mit.edu	37	13	99064179	99064179	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23887584	23887584	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
DAAM1	23002	broad.mit.edu	37	14	59819340	59819340	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
NUMB	8650	broad.mit.edu	37	14	73743889	73743889	+	Silent	SNP	G	C	C			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPAP1	26015	broad.mit.edu	37	15	41819725	41819725	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPAP1	26015	broad.mit.edu	37	15	41822071	41822071	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPAP1	26015	broad.mit.edu	37	15	41823249	41823249	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPAP1	26015	broad.mit.edu	37	15	41823378	41823378	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
PYGO1	26108	broad.mit.edu	37	15	55839115	55839115	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
HEXA	3073	broad.mit.edu	37	15	72645501	72645501	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF710	374655	broad.mit.edu	37	15	90611183	90611183	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
C15orf58	390637	broad.mit.edu	37	15	90785018	90785018	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
IGFALS	3483	broad.mit.edu	37	16	1841120	1841120	+	Silent	SNP	C	T	T			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
SRRM2	23524	broad.mit.edu	37	16	2813372	2813372	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
SHCBP1	79801	broad.mit.edu	37	16	46650007	46650007	+	Silent	SNP	G	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZFHX3	463	broad.mit.edu	37	16	72830449	72830449	+	Silent	SNP	A	G	G			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF276	92822	broad.mit.edu	37	16	89788955	89788955	+	Silent	SNP	C	T	T			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
SREBF1	6720	broad.mit.edu	37	17	17723649	17723649	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACACA	31	broad.mit.edu	37	17	35445914	35445914	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZZEF1	23140	broad.mit.edu	37	17	4017635	4017635	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
C17orf53	78995	broad.mit.edu	37	17	42225570	42225570	+	Silent	SNP	C	T	T			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
GFAP	2670	broad.mit.edu	37	17	42985496	42985496	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
B4GALNT2	124872	broad.mit.edu	37	17	47218697	47218697	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPS2	2874	broad.mit.edu	37	17	7216114	7216114	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHD3	1107	broad.mit.edu	37	17	7802493	7802493	+	Silent	SNP	C	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPTOR	57521	broad.mit.edu	37	17	78936369	78936369	+	Silent	SNP	G	C	C			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYOM1	8736	broad.mit.edu	37	18	3090701	3090701	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
WIZ	58525	broad.mit.edu	37	19	15536463	15536463	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNN1	3780	broad.mit.edu	37	19	18085055	18085055	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
LSM7	51690	broad.mit.edu	37	19	2328414	2328414	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC39A3	29985	broad.mit.edu	37	19	2737188	2737188	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
LIPE	3991	broad.mit.edu	37	19	42906947	42906947	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF415	55786	broad.mit.edu	37	19	53612598	53612598	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9048660	9048660	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
UBE2J2	118424	broad.mit.edu	37	1	1203256	1203256	+	Silent	SNP	C	T	T			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
HCN3	57657	broad.mit.edu	37	1	155252454	155252454	+	Silent	SNP	C	T	T			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
RUSC1	23623	broad.mit.edu	37	1	155292388	155292388	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP1A4	480	broad.mit.edu	37	1	160156121	160156121	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYOC	4653	broad.mit.edu	37	1	171621749	171621749	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP13A2	23400	broad.mit.edu	37	1	17316492	17316492	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLEKHA6	22874	broad.mit.edu	37	1	204228731	204228731	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237881784	237881784	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
HNRNPU	3192	broad.mit.edu	37	1	245017797	245017797	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIF26B	55083	broad.mit.edu	37	1	245809541	245809541	+	Silent	SNP	C	T	T			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRRC47	57470	broad.mit.edu	37	1	3703763	3703763	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRRC41	10489	broad.mit.edu	37	1	46763283	46763283	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC5A9	200010	broad.mit.edu	37	1	48697274	48697274	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82451025	82451025	+	Nonsense_Mutation	SNP	C	G	G			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86252137	86252137	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPTLC3	55304	broad.mit.edu	37	20	13098330	13098330	+	Silent	SNP	C	T	T			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
CRNKL1	51340	broad.mit.edu	37	20	20024216	20024216	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYH7B	57644	broad.mit.edu	37	20	33568508	33568508	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRPF6	24148	broad.mit.edu	37	20	62657330	62657330	+	Silent	SNP	G	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
SFRS15	57466	broad.mit.edu	37	21	33076226	33076226	+	Missense_Mutation	SNP	T	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
NFE2L2	4780	broad.mit.edu	37	2	178098954	178098954	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
AOX1	316	broad.mit.edu	37	2	201515748	201515748	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
RETSAT	54884	broad.mit.edu	37	2	85577947	85577947	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
EIF2AK3	9451	broad.mit.edu	37	2	88888374	88888374	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
ALCAM	214	broad.mit.edu	37	3	105243325	105243325	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
C3orf15	89876	broad.mit.edu	37	3	119451310	119451310	+	Silent	SNP	C	G	G			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
GK5	256356	broad.mit.edu	37	3	141889249	141889249	+	Silent	SNP	G	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
MBNL1	4154	broad.mit.edu	37	3	152018007	152018007	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
TBL1XR1	79718	broad.mit.edu	37	3	176752109	176752109	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
SCN11A	11280	broad.mit.edu	37	3	38888407	38888407	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
IMPDH2	3615	broad.mit.edu	37	3	49064436	49064436	+	Silent	SNP	G	T	T			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
SETD5	55209	broad.mit.edu	37	3	9483388	9483388	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187549509	187549509	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187549807	187549807	+	Silent	SNP	G	T	T			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
RFC1	5981	broad.mit.edu	37	4	39290425	39290425	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
EVC2	132884	broad.mit.edu	37	4	5633669	5633669	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
GAK	2580	broad.mit.edu	37	4	898429	898429	+	Missense_Mutation	SNP	A	T	T			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11346575	11346575	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
F12	2161	broad.mit.edu	37	5	176833003	176833003	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
VCAN	1462	broad.mit.edu	37	5	82868358	82868358	+	Missense_Mutation	SNP	T	G	G			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
BCLAF1	9774	broad.mit.edu	37	6	136599223	136599223	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	144803379	144803379	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
HIST1H2BI	8346	broad.mit.edu	37	6	26273432	26273432	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
BTN3A3	10384	broad.mit.edu	37	6	26452381	26452381	+	Silent	SNP	C	T	T			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
ORC3L	23595	broad.mit.edu	37	6	88317511	88317511	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
MET	4233	broad.mit.edu	37	7	116409705	116409705	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC4A2	6522	broad.mit.edu	37	7	150768253	150768253	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIL	9865	broad.mit.edu	37	7	28997432	28997432	+	Silent	SNP	G	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
LANCL2	55915	broad.mit.edu	37	7	55459492	55459492	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
PION	54103	broad.mit.edu	37	7	77010667	77010667	+	Silent	SNP	A	G	G			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
TM7SF4	81501	broad.mit.edu	37	8	105361016	105361016	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTK2B	2185	broad.mit.edu	37	8	27288405	27288405	+	Silent	SNP	C	A	A			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
MCM4	4173	broad.mit.edu	37	8	48874100	48874100	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
SGK223	157285	broad.mit.edu	37	8	8185504	8185504	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
CNTLN	54875	broad.mit.edu	37	9	17464544	17464544	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
NDUFB6	4712	broad.mit.edu	37	9	32572968	32572968	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF75D	7626	broad.mit.edu	37	X	134427903	134427903	+	Missense_Mutation	SNP	A	T	T			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
POLA1	5422	broad.mit.edu	37	X	24759577	24759577	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
CXorf21	80231	broad.mit.edu	37	X	30577604	30577604	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM47C	442444	broad.mit.edu	37	X	37028425	37028425	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
FGD1	2245	broad.mit.edu	37	X	54497828	54497828	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA2022	340533	broad.mit.edu	37	X	73962899	73962899	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLEKHG3	26030	broad.mit.edu	37	14	65204696	65204698	+	In_Frame_Del	DEL	GGA	-	-	rs78348535		TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
NOTCH2	4853	broad.mit.edu	37	1	120612003	120612004	+	Frame_Shift_Del	DEL	GG	-	-			TCGA-BT-A20U-01	TCGA-BT-A20U-01									Somatic	Phase_I	Capture				Illumina GAIIx
