Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
PPAPDC1A	196051	broad.mit.edu	37	10	122334734	122334734	+	Silent	SNP	C	G	G			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	17083212	17083212	+	Silent	SNP	C	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYO3A	53904	broad.mit.edu	37	10	26492008	26492008	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37438756	37438756	+	Missense_Mutation	SNP	A	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR6M1	390261	broad.mit.edu	37	11	123676993	123676993	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADAMTS15	170689	broad.mit.edu	37	11	130318901	130318901	+	Silent	SNP	C	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
E2F8	79733	broad.mit.edu	37	11	19252338	19252338	+	Silent	SNP	C	G	G			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
HTATIP2	10553	broad.mit.edu	37	11	20385976	20385976	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR8K1	390157	broad.mit.edu	37	11	56113882	56113882	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
PHRF1	57661	broad.mit.edu	37	11	609398	609398	+	Silent	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
FLRT1	23769	broad.mit.edu	37	11	63884475	63884475	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPFIBP2	8495	broad.mit.edu	37	11	7652173	7652173	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHPT1	56994	broad.mit.edu	37	12	102108412	102108412	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA1033	23325	broad.mit.edu	37	12	105535024	105535024	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
ULK1	8408	broad.mit.edu	37	12	132405682	132405682	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
RERGL	79785	broad.mit.edu	37	12	18234161	18234161	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0528	9847	broad.mit.edu	37	12	22688194	22688194	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
PKP2	5318	broad.mit.edu	37	12	32949047	32949047	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
SFRS2IP	9169	broad.mit.edu	37	12	46320096	46320096	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
SFRS2IP	9169	broad.mit.edu	37	12	46345474	46345474	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
SP7	121340	broad.mit.edu	37	12	53722482	53722482	+	Silent	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAJC14	85406	broad.mit.edu	37	12	56189844	56189844	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
LGR5	8549	broad.mit.edu	37	12	71960661	71960661	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
CLEC4C	170482	broad.mit.edu	37	12	7883442	7883442	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
NECAP1	25977	broad.mit.edu	37	12	8245543	8245543	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
CLEC4D	338339	broad.mit.edu	37	12	8672931	8672931	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGAP5	394	broad.mit.edu	37	14	32561433	32561433	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
WDR72	256764	broad.mit.edu	37	15	53907975	53907975	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPESP1	246777	broad.mit.edu	37	15	69238675	69238675	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
RBBP6	5930	broad.mit.edu	37	16	24580584	24580584	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
SRRM2	23524	broad.mit.edu	37	16	2806515	2806515	+	Silent	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
TBC1D10B	26000	broad.mit.edu	37	16	30376495	30376495	+	Silent	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
BCKDK	10295	broad.mit.edu	37	16	31122038	31122038	+	Silent	SNP	T	C	C			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF205	7755	broad.mit.edu	37	16	3169745	3169745	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
VPS35	55737	broad.mit.edu	37	16	46694417	46694417	+	Silent	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDH11	1009	broad.mit.edu	37	16	64984769	64984769	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
IL34	146433	broad.mit.edu	37	16	70694047	70694047	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYOCD	93649	broad.mit.edu	37	17	12666707	12666707	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
EFTUD2	9343	broad.mit.edu	37	17	42928692	42928692	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
DGKE	8526	broad.mit.edu	37	17	54912463	54912463	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM59A	64762	broad.mit.edu	37	18	29867362	29867362	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
L3MBTL4	91133	broad.mit.edu	37	18	6237978	6237978	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10089567	10089567	+	Silent	SNP	C	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAN2B1	4125	broad.mit.edu	37	19	12760960	12760960	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF99	7652	broad.mit.edu	37	19	22941065	22941065	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC123	84902	broad.mit.edu	37	19	33444638	33444638	+	Silent	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCTD15	79047	broad.mit.edu	37	19	34297838	34297838	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
CREB3L3	84699	broad.mit.edu	37	19	4159760	4159760	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF404	342908	broad.mit.edu	37	19	44378000	44378000	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
PNKP	11284	broad.mit.edu	37	19	50370414	50370414	+	Silent	SNP	A	G	G			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR108	56927	broad.mit.edu	37	19	6730391	6730391	+	Missense_Mutation	SNP	T	G	G			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
PYGO2	90780	broad.mit.edu	37	1	154932319	154932319	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
RHBG	57127	broad.mit.edu	37	1	156347203	156347203	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
CD1D	912	broad.mit.edu	37	1	158152875	158152875	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
RXRG	6258	broad.mit.edu	37	1	165378870	165378870	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16907361	16907361	+	Silent	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
RC3H1	149041	broad.mit.edu	37	1	173941653	173941653	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175087873	175087873	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175105997	175105997	+	Silent	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186064392	186064392	+	Missense_Mutation	SNP	A	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190067861	190067861	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC26A9	115019	broad.mit.edu	37	1	205904909	205904909	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPS6KC1	26750	broad.mit.edu	37	1	213415278	213415278	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
CD164L2	388611	broad.mit.edu	37	1	27708287	27708287	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTGFR	5737	broad.mit.edu	37	1	78958974	78958974	+	Silent	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC45A1	50651	broad.mit.edu	37	1	8395589	8395589	+	Silent	SNP	C	G	G			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
TASP1	55617	broad.mit.edu	37	20	13610642	13610642	+	Missense_Mutation	SNP	T	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
SNRPB	6628	broad.mit.edu	37	20	2446424	2446424	+	Missense_Mutation	SNP	A	C	C			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF341	84905	broad.mit.edu	37	20	32378876	32378876	+	Silent	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
SMOX	54498	broad.mit.edu	37	20	4162941	4162941	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
MATN4	8785	broad.mit.edu	37	20	43927067	43927067	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
DSCAM	1826	broad.mit.edu	37	21	41447093	41447093	+	Silent	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
SIK1	150094	broad.mit.edu	37	21	44839282	44839282	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
CYTSA	23384	broad.mit.edu	37	22	24717698	24717698	+	Missense_Mutation	SNP	T	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
APOL5	80831	broad.mit.edu	37	22	36122861	36122861	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
MCHR1	2847	broad.mit.edu	37	22	41077528	41077528	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
EFCAB6	64800	broad.mit.edu	37	22	44107434	44107434	+	Missense_Mutation	SNP	A	C	C			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNF1	3754	broad.mit.edu	37	2	11053802	11053802	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC20A1	6574	broad.mit.edu	37	2	113414767	113414767	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
LCT	3938	broad.mit.edu	37	2	136548255	136548255	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
LCT	3938	broad.mit.edu	37	2	136587248	136587248	+	Splice_Site	SNP	T	C	C			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
CRIM1	51232	broad.mit.edu	37	2	36774266	36774266	+	Missense_Mutation	SNP	G	C	C	rs13419463		TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
THADA	63892	broad.mit.edu	37	2	43801788	43801788	+	Silent	SNP	A	G	G			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA1841	84542	broad.mit.edu	37	2	61315572	61315572	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF638	27332	broad.mit.edu	37	2	71576712	71576712	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
TAGLN3	29114	broad.mit.edu	37	3	111730620	111730620	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
BOC	91653	broad.mit.edu	37	3	112992056	112992056	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
GOLGB1	2804	broad.mit.edu	37	3	121417163	121417163	+	Missense_Mutation	SNP	T	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
GATA2	2624	broad.mit.edu	37	3	128200720	128200720	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACAD11	84129	broad.mit.edu	37	3	132360902	132360902	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
USP19	10869	broad.mit.edu	37	3	49152979	49152979	+	Silent	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAH1	25981	broad.mit.edu	37	3	52384032	52384032	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
NISCH	11188	broad.mit.edu	37	3	52491871	52491871	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
C3orf26	84319	broad.mit.edu	37	3	99891191	99891191	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79369461	79369461	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHA7	56141	broad.mit.edu	37	5	140214266	140214266	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYNPO	11346	broad.mit.edu	37	5	150028954	150028954	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYO10	4651	broad.mit.edu	37	5	16672863	16672863	+	Silent	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIM41	90933	broad.mit.edu	37	5	180661677	180661677	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26889976	26889976	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45262052	45262052	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHD1	1105	broad.mit.edu	37	5	98228329	98228329	+	Silent	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
ASCC3	10973	broad.mit.edu	37	6	101246710	101246710	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
BCLAF1	9774	broad.mit.edu	37	6	136590744	136590744	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152639225	152639225	+	Silent	SNP	C	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152749510	152749510	+	Silent	SNP	C	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
PNLDC1	154197	broad.mit.edu	37	6	160221823	160221823	+	Silent	SNP	G	C	C			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
STK38	11329	broad.mit.edu	37	6	36489515	36489515	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIF6	221458	broad.mit.edu	37	6	39545902	39545902	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
SNAP91	9892	broad.mit.edu	37	6	84300945	84300945	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
UBN2	254048	broad.mit.edu	37	7	138943309	138943309	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMEM184A	202915	broad.mit.edu	37	7	1594929	1594929	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	77762250	77762250	+	Silent	SNP	C	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
NEFM	4741	broad.mit.edu	37	8	24771630	24771630	+	Silent	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41573334	41573334	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
IKBKAP	8518	broad.mit.edu	37	9	111685159	111685159	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
NOTCH1	4851	broad.mit.edu	37	9	139413982	139413982	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
MLLT3	4300	broad.mit.edu	37	9	20414346	20414346	+	Silent	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
IFNA4	3441	broad.mit.edu	37	9	21187362	21187362	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARMCX1	51309	broad.mit.edu	37	X	100807941	100807941	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF275	10838	broad.mit.edu	37	X	152612888	152612888	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLXNB3	5365	broad.mit.edu	37	X	153035386	153035386	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
TKTL1	8277	broad.mit.edu	37	X	153543532	153543532	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARSF	416	broad.mit.edu	37	X	3030588	3030588	+	Silent	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
RBM10	8241	broad.mit.edu	37	X	47041570	47041570	+	Missense_Mutation	SNP	A	C	C			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
MTMR8	55613	broad.mit.edu	37	X	63445139	63445139	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
MED12	9968	broad.mit.edu	37	X	70340915	70340915	+	Silent	SNP	T	G	G			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATRX	546	broad.mit.edu	37	X	76776904	76776904	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRC1	9055	broad.mit.edu	37	15	91513733	91513734	+	In_Frame_Ins	INS	-	GTA	GTA			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
RBM27	54439	broad.mit.edu	37	5	145647320	145647320	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152527300	152527301	+	Splice_Site	INS	-	A	A			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
SMAP1	60682	broad.mit.edu	37	6	71508370	71508370	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BT-A20V-01	TCGA-BT-A20V-01									Somatic	Phase_I	Capture				Illumina GAIIx
