Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
SORCS1	114815	broad.mit.edu	37	10	108459108	108459108	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
SEC23IP	11196	broad.mit.edu	37	10	121677504	121677504	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
CUL2	8453	broad.mit.edu	37	10	35360158	35360158	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
HK1	3098	broad.mit.edu	37	10	71149006	71149006	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA1274	27143	broad.mit.edu	37	10	72292376	72292376	+	Splice_Site	SNP	G	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
C10orf54	64115	broad.mit.edu	37	10	73521607	73521607	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
ECD	11319	broad.mit.edu	37	10	74896575	74896575	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
CASP4	837	broad.mit.edu	37	11	104825572	104825573	+	Missense_Mutation	DNP	CG	AA	AA			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
C11orf87	399947	broad.mit.edu	37	11	109294575	109294575	+	Silent	SNP	C	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR6T1	219874	broad.mit.edu	37	11	123813872	123813872	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
OPCML	4978	broad.mit.edu	37	11	132306671	132306671	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
STIM1	6786	broad.mit.edu	37	11	3877560	3877560	+	Silent	SNP	C	G	G			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDCA5	113130	broad.mit.edu	37	11	64846850	64846850	+	Missense_Mutation	SNP	T	A	A			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
DCHS1	8642	broad.mit.edu	37	11	6661191	6661191	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRCP	5547	broad.mit.edu	37	11	82549509	82549509	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
TBX5	6910	broad.mit.edu	37	12	114832589	114832589	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
RNFT2	84900	broad.mit.edu	37	12	117274059	117274059	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
NCOR2	9612	broad.mit.edu	37	12	124816920	124816920	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMEM132B	114795	broad.mit.edu	37	12	126135481	126135481	+	Silent	SNP	G	T	T	rs73420208	by1000genomes	TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCC9	10060	broad.mit.edu	37	12	22015990	22015990	+	Splice_Site	SNP	T	A	A			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNA1	3736	broad.mit.edu	37	12	5020706	5020706	+	Silent	SNP	C	A	A			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
ERCC5	2073	broad.mit.edu	37	13	103484016	103484016	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
SACS	26278	broad.mit.edu	37	13	23906256	23906256	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
SOHLH2	54937	broad.mit.edu	37	13	36744906	36744906	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
NEK5	341676	broad.mit.edu	37	13	52661488	52661488	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
TBC1D4	9882	broad.mit.edu	37	13	75936294	75936294	+	Silent	SNP	G	A	A			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR6S1	341799	broad.mit.edu	37	14	21109226	21109226	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
EAPP	55837	broad.mit.edu	37	14	34985629	34985629	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
EAPP	55837	broad.mit.edu	37	14	34985718	34985718	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94039110	94039110	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
THBS1	7057	broad.mit.edu	37	15	39881448	39881448	+	Silent	SNP	C	A	A			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
PYGO1	26108	broad.mit.edu	37	15	55841124	55841124	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
GOLGA6A	342096	broad.mit.edu	37	15	74365122	74365122	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
C15orf42	90381	broad.mit.edu	37	15	90167478	90167478	+	Missense_Mutation	SNP	A	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
ST8SIA2	8128	broad.mit.edu	37	15	92977602	92977602	+	Missense_Mutation	SNP	T	A	A			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF598	90850	broad.mit.edu	37	16	2052220	2052220	+	Silent	SNP	C	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0556	23247	broad.mit.edu	37	16	27761348	27761348	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPNS1	83985	broad.mit.edu	37	16	28993242	28993242	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDH11	1009	broad.mit.edu	37	16	65016031	65016031	+	Missense_Mutation	SNP	T	G	G			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP6V0A1	535	broad.mit.edu	37	17	40642597	40642597	+	Nonsense_Mutation	SNP	T	G	G			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP6V0A1	535	broad.mit.edu	37	17	40652912	40652912	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
BRCA1	672	broad.mit.edu	37	17	41244840	41244840	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
DHX33	56919	broad.mit.edu	37	17	5365692	5365692	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
COIL	8161	broad.mit.edu	37	17	55027860	55027860	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC16A6	9120	broad.mit.edu	37	17	66267519	66267519	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
NEURL4	84461	broad.mit.edu	37	17	7226379	7226379	+	Silent	SNP	C	A	A			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
THOC1	9984	broad.mit.edu	37	18	252549	252549	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
PIK3C3	5289	broad.mit.edu	37	18	39584404	39584404	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF99	7652	broad.mit.edu	37	19	22941848	22941848	+	Missense_Mutation	SNP	T	G	G			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
UQCRFS1	7386	broad.mit.edu	37	19	29698687	29698687	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAP4K1	11184	broad.mit.edu	37	19	39086328	39086328	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBXO27	126433	broad.mit.edu	37	19	39516069	39516069	+	Silent	SNP	C	G	G			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
SAMD4B	55095	broad.mit.edu	37	19	39866391	39866391	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43585371	43585371	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPFIA3	8541	broad.mit.edu	37	19	49641521	49641521	+	Missense_Mutation	SNP	T	G	G			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
LILRB5	10990	broad.mit.edu	37	19	54759177	54759177	+	Silent	SNP	G	A	A			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
NLRP8	126205	broad.mit.edu	37	19	56467116	56467116	+	Silent	SNP	C	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9085813	9085813	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
NRAS	4893	broad.mit.edu	37	1	115258745	115258745	+	Missense_Mutation	SNP	C	G	G	rs121434595		TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
C1orf158	93190	broad.mit.edu	37	1	12819342	12819342	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
RUSC1	23623	broad.mit.edu	37	1	155294949	155294949	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158613184	158613184	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPRS	2058	broad.mit.edu	37	1	220195731	220195731	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTPRU	10076	broad.mit.edu	37	1	29651735	29651735	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
UQCRH	7388	broad.mit.edu	37	1	46775859	46775859	+	Silent	SNP	G	A	A			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
IL23R	149233	broad.mit.edu	37	1	67666418	67666418	+	Splice_Site	SNP	A	C	C			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
FNBP1L	54874	broad.mit.edu	37	1	94016559	94016559	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCIF1	63935	broad.mit.edu	37	20	44571999	44571999	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
BACH1	571	broad.mit.edu	37	21	30699117	30699117	+	Silent	SNP	T	G	G			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
KRTAP24-1	643803	broad.mit.edu	37	21	31655055	31655055	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
DRG1	4733	broad.mit.edu	37	22	31816285	31816285	+	Silent	SNP	G	A	A			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAPGEF4	11069	broad.mit.edu	37	2	173825863	173825863	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
FKBP7	51661	broad.mit.edu	37	2	179343067	179343067	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179462331	179462331	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
ITGA4	3676	broad.mit.edu	37	2	182387015	182387015	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAJB2	3300	broad.mit.edu	37	2	220147644	220147644	+	Silent	SNP	G	A	A			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
HTR2B	3357	broad.mit.edu	37	2	231978470	231978470	+	Missense_Mutation	SNP	T	G	G			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARL4C	10123	broad.mit.edu	37	2	235405159	235405159	+	Silent	SNP	G	A	A			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
NRBP1	29959	broad.mit.edu	37	2	27664633	27664633	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50724504	50724504	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC1A4	6509	broad.mit.edu	37	2	65248226	65248226	+	Silent	SNP	C	A	A			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMEM131	23505	broad.mit.edu	37	2	98504542	98504542	+	Missense_Mutation	SNP	T	C	C			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
IMPG2	50939	broad.mit.edu	37	3	100948226	100948226	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBXO40	51725	broad.mit.edu	37	3	121341105	121341105	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC41A3	54946	broad.mit.edu	37	3	125735625	125735625	+	Missense_Mutation	SNP	T	G	G			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIM42	287015	broad.mit.edu	37	3	140397214	140397214	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
SMC4	10051	broad.mit.edu	37	3	160146645	160146645	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
SGOL1	151648	broad.mit.edu	37	3	20225210	20225210	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
SCN11A	11280	broad.mit.edu	37	3	38945514	38945514	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
NKTR	4820	broad.mit.edu	37	3	42680096	42680096	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54930865	54930865	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	78685192	78685192	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA1109	84162	broad.mit.edu	37	4	123160717	123160717	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
C4orf35	85438	broad.mit.edu	37	4	71200994	71200994	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
MMRN1	22915	broad.mit.edu	37	4	90872768	90872768	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHSY3	337876	broad.mit.edu	37	5	129520760	129520760	+	Missense_Mutation	SNP	A	G	G			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13753535	13753535	+	Missense_Mutation	SNP	T	A	A			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
REEP2	51308	broad.mit.edu	37	5	137780945	137780945	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13823473	13823473	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHA1	56147	broad.mit.edu	37	5	140167956	140167956	+	Missense_Mutation	SNP	T	A	A			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL23A1	91522	broad.mit.edu	37	5	177677073	177677073	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
FLT4	2324	broad.mit.edu	37	5	180057288	180057288	+	Silent	SNP	C	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
RASA1	5921	broad.mit.edu	37	5	86645099	86645099	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
ASCC3	10973	broad.mit.edu	37	6	100966000	100966000	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
SEC63	11231	broad.mit.edu	37	6	108193031	108193031	+	Silent	SNP	C	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
IYD	389434	broad.mit.edu	37	6	150713566	150713566	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
QKI	9444	broad.mit.edu	37	6	163984654	163984654	+	Silent	SNP	C	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR5V1	81696	broad.mit.edu	37	6	29323425	29323425	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
CPA2	1358	broad.mit.edu	37	7	129908841	129908841	+	Silent	SNP	A	G	G			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF282	8427	broad.mit.edu	37	7	148895707	148895707	+	Missense_Mutation	SNP	A	C	C			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM126A	84668	broad.mit.edu	37	7	23016375	23016375	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43508602	43508602	+	Silent	SNP	C	G	G			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100844794	100844794	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRRC6	23639	broad.mit.edu	37	8	133584686	133584686	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZFAT	57623	broad.mit.edu	37	8	135615035	135615035	+	Silent	SNP	G	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBXO16	157574	broad.mit.edu	37	8	28304779	28304779	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADHFE1	137872	broad.mit.edu	37	8	67357557	67357557	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
SGK223	157285	broad.mit.edu	37	8	8185379	8185379	+	Silent	SNP	G	A	A			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
HEMGN	55363	broad.mit.edu	37	9	100692795	100692795	+	Silent	SNP	T	G	G			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
RNF20	56254	broad.mit.edu	37	9	104314697	104314697	+	Silent	SNP	G	A	A			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0368	23392	broad.mit.edu	37	9	114176711	114176711	+	Missense_Mutation	SNP	C	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
NUP188	23511	broad.mit.edu	37	9	131755675	131755675	+	Missense_Mutation	SNP	G	C	C			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTF1	7270	broad.mit.edu	37	9	135276961	135276961	+	Silent	SNP	G	A	A			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL5A1	1289	broad.mit.edu	37	9	137619185	137619185	+	Missense_Mutation	SNP	A	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBXW5	54461	broad.mit.edu	37	9	139837920	139837920	+	Missense_Mutation	SNP	C	A	A			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
FGD3	89846	broad.mit.edu	37	9	95768370	95768370	+	Missense_Mutation	SNP	G	A	A			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC6A14	11254	broad.mit.edu	37	X	115573895	115573895	+	Silent	SNP	A	G	G			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123556134	123556134	+	Missense_Mutation	SNP	C	G	G			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
DCAF12L1	139170	broad.mit.edu	37	X	125685222	125685222	+	Missense_Mutation	SNP	T	G	G			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTCHD1	139411	broad.mit.edu	37	X	23411961	23411961	+	Missense_Mutation	SNP	G	T	T			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
STARD8	9754	broad.mit.edu	37	X	67940175	67940175	+	Silent	SNP	A	C	C			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMEM184B	25829	broad.mit.edu	37	22	38626692	38626692	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYN2	6854	broad.mit.edu	37	3	12046124	12046126	+	In_Frame_Del	DEL	AGC	-	-	rs76272937		TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
AKAP9	10142	broad.mit.edu	37	7	91726612	91726613	+	Frame_Shift_Ins	INS	-	A	A			TCGA-BT-A20W-01	TCGA-BT-A20W-01									Somatic	Phase_I	Capture				Illumina GAIIx
