Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
SORCS3	22986	broad.mit.edu	37	10	106918677	106918677	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
DCLRE1A	9937	broad.mit.edu	37	10	115609945	115609945	+	Nonsense_Mutation	SNP	C	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124377609	124377609	+	Missense_Mutation	SNP	A	C	C			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF248	57209	broad.mit.edu	37	10	38121959	38121959	+	Silent	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
GDI2	2665	broad.mit.edu	37	10	5827911	5827911	+	Missense_Mutation	SNP	T	C	C			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
MARCH5	54708	broad.mit.edu	37	10	94109544	94109544	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYOF	26509	broad.mit.edu	37	10	95157003	95157003	+	Splice_Site	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
RNF141	50862	broad.mit.edu	37	11	10536558	10536558	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
GRIA4	2893	broad.mit.edu	37	11	105797580	105797580	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
GRIA4	2893	broad.mit.edu	37	11	105842684	105842684	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
VPS11	55823	broad.mit.edu	37	11	118940031	118940031	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR10G8	219869	broad.mit.edu	37	11	123900682	123900682	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1269778	1269778	+	Missense_Mutation	SNP	T	C	C			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGAP32	9743	broad.mit.edu	37	11	128857989	128857989	+	Silent	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
IFITM5	387733	broad.mit.edu	37	11	299346	299346	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABTB2	25841	broad.mit.edu	37	11	34182492	34182492	+	Silent	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIM68	55128	broad.mit.edu	37	11	4626603	4626603	+	Nonsense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
FOLH1	2346	broad.mit.edu	37	11	49176040	49176040	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR51G2	81282	broad.mit.edu	37	11	4936818	4936818	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR51Q1	390061	broad.mit.edu	37	11	5443929	5443929	+	Nonsense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR1S1	219959	broad.mit.edu	37	11	57982648	57982648	+	Silent	SNP	T	C	C			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR5AN1	390195	broad.mit.edu	37	11	59132285	59132285	+	Silent	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
VWCE	220001	broad.mit.edu	37	11	61026731	61026731	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
GNG3	2785	broad.mit.edu	37	11	62475847	62475847	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
SNX32	254122	broad.mit.edu	37	11	65618824	65618824	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
DCHS1	8642	broad.mit.edu	37	11	6661249	6661249	+	Silent	SNP	C	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
GRM5	2915	broad.mit.edu	37	11	88780634	88780634	+	Missense_Mutation	SNP	G	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
FOLH1B	219595	broad.mit.edu	37	11	89424054	89424054	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM71C	196472	broad.mit.edu	37	12	100042274	100042274	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
EID3	493861	broad.mit.edu	37	12	104698237	104698237	+	Silent	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBXO21	23014	broad.mit.edu	37	12	117610323	117610323	+	Silent	SNP	G	C	C			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
EP400	57634	broad.mit.edu	37	12	132490706	132490706	+	Silent	SNP	C	G	G			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR6C76	390326	broad.mit.edu	37	12	55820919	55820919	+	Silent	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
SILV	6490	broad.mit.edu	37	12	56355231	56355231	+	Silent	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC39A5	283375	broad.mit.edu	37	12	56629078	56629078	+	Missense_Mutation	SNP	T	C	C			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRP1	4035	broad.mit.edu	37	12	57603647	57603647	+	Silent	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
R3HDM2	22864	broad.mit.edu	37	12	57662771	57662771	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
A2M	2	broad.mit.edu	37	12	9259153	9259153	+	Nonsense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
MCF2L	23263	broad.mit.edu	37	13	113750868	113750868	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDK8	1024	broad.mit.edu	37	13	26927985	26927985	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
C14orf93	60686	broad.mit.edu	37	14	23457182	23457182	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23884440	23884440	+	Missense_Mutation	SNP	T	C	C			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADCY4	196883	broad.mit.edu	37	14	24792260	24792260	+	Missense_Mutation	SNP	G	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
FOXG1	2290	broad.mit.edu	37	14	29236560	29236560	+	Silent	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM177A1	283635	broad.mit.edu	37	14	35550231	35550231	+	Missense_Mutation	SNP	G	C	C	rs56876270		TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42361125	42361125	+	Silent	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
POLE2	5427	broad.mit.edu	37	14	50154880	50154880	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC35F4	341880	broad.mit.edu	37	14	58031040	58031040	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
ISM2	145501	broad.mit.edu	37	14	77948949	77948949	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94155067	94155067	+	Silent	SNP	C	G	G			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
MKRN3	7681	broad.mit.edu	37	15	23811572	23811572	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
OTUD7A	161725	broad.mit.edu	37	15	31851205	31851205	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
TP53BP1	7158	broad.mit.edu	37	15	43724559	43724559	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
C15orf33	196951	broad.mit.edu	37	15	49882012	49882012	+	Missense_Mutation	SNP	A	G	G			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
HDC	3067	broad.mit.edu	37	15	50550637	50550637	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
DMXL2	23312	broad.mit.edu	37	15	51790751	51790751	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPS2	6187	broad.mit.edu	37	16	2012182	2012182	+	Nonsense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
PKD1	5310	broad.mit.edu	37	16	2149701	2149701	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGAP17	55114	broad.mit.edu	37	16	24990327	24990327	+	Splice_Site	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
SRCAP	10847	broad.mit.edu	37	16	30734385	30734385	+	Silent	SNP	C	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
NLRC3	197358	broad.mit.edu	37	16	3613170	3613170	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
RSPRY1	89970	broad.mit.edu	37	16	57250884	57250884	+	Missense_Mutation	SNP	A	G	G			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
WDR24	84219	broad.mit.edu	37	16	735981	735981	+	Silent	SNP	C	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
MSLNL	401827	broad.mit.edu	37	16	822685	822685	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
MBTPS1	8720	broad.mit.edu	37	16	84118642	84118642	+	Nonsense_Mutation	SNP	G	C	C			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
USP10	9100	broad.mit.edu	37	16	84793807	84793807	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
FOXF1	2294	broad.mit.edu	37	16	86545073	86545073	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPIRE2	84501	broad.mit.edu	37	16	89924757	89924757	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
SCO1	6341	broad.mit.edu	37	17	10600714	10600714	+	Silent	SNP	C	G	G			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
NOS2	4843	broad.mit.edu	37	17	26098034	26098034	+	Missense_Mutation	SNP	T	C	C			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
PHF12	57649	broad.mit.edu	37	17	27233884	27233884	+	Silent	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
RNF135	84282	broad.mit.edu	37	17	29311659	29311659	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR179	440435	broad.mit.edu	37	17	36482906	36482906	+	Silent	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBXL20	84961	broad.mit.edu	37	17	37457256	37457256	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDK12	51755	broad.mit.edu	37	17	37650822	37650822	+	Missense_Mutation	SNP	A	G	G			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
BZRAP1	9256	broad.mit.edu	37	17	56395743	56395743	+	Silent	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
BPTF	2186	broad.mit.edu	37	17	65907526	65907526	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
SDK2	54549	broad.mit.edu	37	17	71391324	71391324	+	Nonsense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577114	7577114	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMC8	147138	broad.mit.edu	37	17	76136924	76136924	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAH17	8632	broad.mit.edu	37	17	76457697	76457697	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
NOTUM	147111	broad.mit.edu	37	17	79910997	79910997	+	Missense_Mutation	SNP	T	C	C			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
ASPSCR1	79058	broad.mit.edu	37	17	79973232	79973232	+	Silent	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
APCDD1	147495	broad.mit.edu	37	18	10471657	10471657	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
C18orf1	753	broad.mit.edu	37	18	13621234	13621234	+	Silent	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
DSG4	147409	broad.mit.edu	37	18	28956922	28956922	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANKRD12	23253	broad.mit.edu	37	18	9254812	9254812	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP8B3	148229	broad.mit.edu	37	19	1807231	1807231	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
CD22	933	broad.mit.edu	37	19	35828735	35828735	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
CEACAM4	1089	broad.mit.edu	37	19	42132050	42132050	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF224	7767	broad.mit.edu	37	19	44611292	44611292	+	Nonsense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF296	162979	broad.mit.edu	37	19	45579562	45579562	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
RSPH6A	81492	broad.mit.edu	37	19	46314063	46314063	+	Missense_Mutation	SNP	A	G	G			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYT3	84258	broad.mit.edu	37	19	51136047	51136047	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
NLRP8	126205	broad.mit.edu	37	19	56466880	56466880	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
USP29	57663	broad.mit.edu	37	19	57641980	57641980	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF419	79744	broad.mit.edu	37	19	58004247	58004247	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF135	7694	broad.mit.edu	37	19	58574893	58574893	+	Silent	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
MZF1	7593	broad.mit.edu	37	19	59082675	59082675	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBN3	84467	broad.mit.edu	37	19	8131009	8131009	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9025599	9025599	+	Silent	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
CD101	9398	broad.mit.edu	37	1	117559730	117559730	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
UBE2J2	118424	broad.mit.edu	37	1	1190692	1190692	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATAD3A	55210	broad.mit.edu	37	1	1455591	1455591	+	Silent	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152323912	152323912	+	Missense_Mutation	SNP	A	C	C			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152325595	152325595	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAB13	5872	broad.mit.edu	37	1	153958590	153958590	+	Silent	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158636180	158636180	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPOX	5498	broad.mit.edu	37	1	161140556	161140556	+	Silent	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPEN	23013	broad.mit.edu	37	1	16256134	16256134	+	Silent	SNP	T	C	C			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
XPR1	9213	broad.mit.edu	37	1	180794388	180794388	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181767565	181767565	+	Silent	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190250704	190250704	+	Missense_Mutation	SNP	G	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196654203	196654203	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
KDM5B	10765	broad.mit.edu	37	1	202705488	202705488	+	Silent	SNP	G	C	C			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADORA1	134	broad.mit.edu	37	1	203134833	203134833	+	Silent	SNP	C	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDK18	5129	broad.mit.edu	37	1	205492699	205492699	+	Silent	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC26A9	115019	broad.mit.edu	37	1	205892742	205892742	+	Splice_Site	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIF17	57576	broad.mit.edu	37	1	21031304	21031304	+	Silent	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
C1orf198	84886	broad.mit.edu	37	1	231004093	231004093	+	Missense_Mutation	SNP	G	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARID4B	51742	broad.mit.edu	37	1	235377119	235377119	+	Silent	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
HNRNPR	10236	broad.mit.edu	37	1	23637376	23637376	+	Silent	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
MMEL1	79258	broad.mit.edu	37	1	2541243	2541243	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0754	643314	broad.mit.edu	37	1	39878175	39878175	+	Silent	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL9A2	1298	broad.mit.edu	37	1	40775613	40775613	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
PODN	127435	broad.mit.edu	37	1	53546444	53546444	+	Silent	SNP	G	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHD5	26038	broad.mit.edu	37	1	6206806	6206806	+	Silent	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNHIT6	54680	broad.mit.edu	37	1	86123573	86123573	+	Silent	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
GBP1	2633	broad.mit.edu	37	1	89521750	89521750	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRRC8C	84230	broad.mit.edu	37	1	90178326	90178326	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
NRSN2	80023	broad.mit.edu	37	20	334124	334124	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYH7B	57644	broad.mit.edu	37	20	33582027	33582027	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM83C	128876	broad.mit.edu	37	20	33874706	33874706	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLCG1	5335	broad.mit.edu	37	20	39798838	39798838	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
CTSA	5476	broad.mit.edu	37	20	44521121	44521121	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47242457	47242457	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRIC285	85441	broad.mit.edu	37	20	62195200	62195200	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
SAMSN1	64092	broad.mit.edu	37	21	15870854	15870854	+	Missense_Mutation	SNP	T	C	C			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
TXNRD2	10587	broad.mit.edu	37	22	19868214	19868214	+	Silent	SNP	C	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
TCN2	6948	broad.mit.edu	37	22	31011460	31011460	+	Silent	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
FOXRED2	80020	broad.mit.edu	37	22	36889753	36889755	+	Missense_Mutation	TNP	CGG	AAA	AAA			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	131904340	131904340	+	Silent	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
SCN7A	6332	broad.mit.edu	37	2	167263124	167263124	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF804A	91752	broad.mit.edu	37	2	185802171	185802171	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
ITGAV	3685	broad.mit.edu	37	2	187455218	187455218	+	Silent	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189950444	189950444	+	Splice_Site	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
HECW2	57520	broad.mit.edu	37	2	197080609	197080609	+	Silent	SNP	C	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLCL1	5334	broad.mit.edu	37	2	198949278	198949278	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220344839	220344839	+	Silent	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANKMY1	51281	broad.mit.edu	37	2	241420353	241420353	+	Splice_Site	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33614357	33614357	+	Silent	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC4A5	57835	broad.mit.edu	37	2	74481774	74481774	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
DPPA2	151871	broad.mit.edu	37	3	109031405	109031405	+	Silent	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA2018	205717	broad.mit.edu	37	3	113374183	113374183	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
PARP9	83666	broad.mit.edu	37	3	122277249	122277249	+	Silent	SNP	C	T	T	rs59755035		TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
NPHP3	27031	broad.mit.edu	37	3	132407701	132407701	+	Missense_Mutation	SNP	C	T	T	rs119456963		TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATR	545	broad.mit.edu	37	3	142183957	142183957	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
NLGN1	22871	broad.mit.edu	37	3	173322753	173322753	+	Missense_Mutation	SNP	T	C	C			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
NEK10	152110	broad.mit.edu	37	3	27161293	27161293	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	55052286	55052286	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
PROS1	5627	broad.mit.edu	37	3	93605209	93605209	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
CPNE9	151835	broad.mit.edu	37	3	9768403	9768403	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR5AC2	81050	broad.mit.edu	37	3	97806804	97806804	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA1109	84162	broad.mit.edu	37	4	123171629	123171629	+	Silent	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126336818	126336818	+	Nonsense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
ODZ3	55714	broad.mit.edu	37	4	183721343	183721343	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
TBC1D1	23216	broad.mit.edu	37	4	38051323	38051323	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
C4orf50	389197	broad.mit.edu	37	4	5966859	5966859	+	Silent	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66467438	66467438	+	Silent	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC6A19	340024	broad.mit.edu	37	5	1221323	1221323	+	Silent	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF608	57507	broad.mit.edu	37	5	124080631	124080631	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13737394	13737394	+	Nonsense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13776655	13776655	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13913952	13913952	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHAC1	56135	broad.mit.edu	37	5	140307955	140307955	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15936774	15936774	+	Silent	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
GABRA6	2559	broad.mit.edu	37	5	161119111	161119111	+	Nonsense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	22078733	22078733	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAP3K1	4214	broad.mit.edu	37	5	56177956	56177956	+	Nonsense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
IQGAP2	10788	broad.mit.edu	37	5	75893311	75893311	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
RIOK2	55781	broad.mit.edu	37	5	96508967	96508967	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
SIM1	6492	broad.mit.edu	37	6	100841696	100841696	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
GRIK2	2898	broad.mit.edu	37	6	102069950	102069950	+	Missense_Mutation	SNP	A	G	G			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
SESN1	27244	broad.mit.edu	37	6	109309805	109309805	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
THEMIS	387357	broad.mit.edu	37	6	128134483	128134483	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
KATNA1	11104	broad.mit.edu	37	6	149922846	149922846	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152748941	152748941	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
DLL1	28514	broad.mit.edu	37	6	170594690	170594690	+	Nonsense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATF6B	1388	broad.mit.edu	37	6	32095973	32095973	+	Silent	SNP	C	G	G			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
BRD2	6046	broad.mit.edu	37	6	32947663	32947663	+	Nonsense_Mutation	SNP	G	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
GRM4	2914	broad.mit.edu	37	6	34008001	34008001	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF292	23036	broad.mit.edu	37	6	87971008	87971008	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
NOS3	4846	broad.mit.edu	37	7	150696094	150696094	+	Silent	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDK5	1020	broad.mit.edu	37	7	150754194	150754194	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151962186	151962186	+	Missense_Mutation	SNP	G	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
OSBPL3	26031	broad.mit.edu	37	7	24932082	24932082	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
TXNDC3	51314	broad.mit.edu	37	7	37901704	37901704	+	Silent	SNP	T	C	C			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC29A4	222962	broad.mit.edu	37	7	5330456	5330456	+	Missense_Mutation	SNP	T	C	C			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF273	10793	broad.mit.edu	37	7	64389174	64389174	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
TYW1	55253	broad.mit.edu	37	7	66479465	66479465	+	Nonsense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
C1GALT1	56913	broad.mit.edu	37	7	7278181	7278181	+	Silent	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
BAZ1B	9031	broad.mit.edu	37	7	72865289	72865289	+	Silent	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTPN12	5782	broad.mit.edu	37	7	77265144	77265144	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF394	84124	broad.mit.edu	37	7	99097605	99097605	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
RGS22	26166	broad.mit.edu	37	8	101078406	101078406	+	Nonsense_Mutation	SNP	G	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNV1	27012	broad.mit.edu	37	8	110980444	110980444	+	Missense_Mutation	SNP	G	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM84B	157638	broad.mit.edu	37	8	127569399	127569399	+	Missense_Mutation	SNP	T	G	G			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
XPO7	23039	broad.mit.edu	37	8	21827081	21827081	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC25A37	51312	broad.mit.edu	37	8	23429029	23429029	+	Silent	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHD7	55636	broad.mit.edu	37	8	61654942	61654942	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
CNBD1	168975	broad.mit.edu	37	8	88249313	88249313	+	Missense_Mutation	SNP	G	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF618	114991	broad.mit.edu	37	9	116812345	116812345	+	Silent	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANGPTL2	23452	broad.mit.edu	37	9	129854112	129854112	+	Silent	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
FUBP3	8939	broad.mit.edu	37	9	133455140	133455140	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADAMTSL2	9719	broad.mit.edu	37	9	136402526	136402526	+	Splice_Site	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
LCN9	392399	broad.mit.edu	37	9	138555250	138555250	+	Missense_Mutation	SNP	A	G	G			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCA2	20	broad.mit.edu	37	9	139903823	139903823	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140901335	140901335	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADAMTSL1	92949	broad.mit.edu	37	9	18753463	18753463	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
KLF9	687	broad.mit.edu	37	9	73002701	73002701	+	Silent	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMEM2	23670	broad.mit.edu	37	9	74324386	74324386	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
BHLHB9	80823	broad.mit.edu	37	X	102004206	102004206	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
KLHL13	90293	broad.mit.edu	37	X	117053608	117053608	+	Missense_Mutation	SNP	A	G	G			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA1210	57481	broad.mit.edu	37	X	118223343	118223343	+	Missense_Mutation	SNP	A	G	G			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
SH2D1A	4068	broad.mit.edu	37	X	123504041	123504041	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
BCORL1	63035	broad.mit.edu	37	X	129149014	129149014	+	Nonsense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
SAGE1	55511	broad.mit.edu	37	X	134987445	134987445	+	Missense_Mutation	SNP	G	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPANXN3	139067	broad.mit.edu	37	X	142596840	142596840	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	148037678	148037678	+	Silent	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
MTM1	4534	broad.mit.edu	37	X	149809883	149809883	+	Nonsense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
CD99L2	83692	broad.mit.edu	37	X	149963917	149963917	+	Missense_Mutation	SNP	G	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
OPN1MW	2652	broad.mit.edu	37	X	153496064	153496064	+	Silent	SNP	G	A	A			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
S100G	795	broad.mit.edu	37	X	16669143	16669143	+	Missense_Mutation	SNP	A	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
IL1RAPL1	11141	broad.mit.edu	37	X	29973758	29973758	+	Silent	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
FTHL17	53940	broad.mit.edu	37	X	31089732	31089732	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
MXRA5	25878	broad.mit.edu	37	X	3239495	3239495	+	Missense_Mutation	SNP	T	C	C			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM47A	158724	broad.mit.edu	37	X	34149314	34149314	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
KDM6A	7403	broad.mit.edu	37	X	44929219	44929219	+	Silent	SNP	A	G	G			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA2022	340533	broad.mit.edu	37	X	73962089	73962089	+	Nonsense_Mutation	SNP	G	C	C			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATRX	546	broad.mit.edu	37	X	76764097	76764097	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
FIGN	55137	broad.mit.edu	37	2	164466194	164466201	+	Frame_Shift_Del	DEL	AATGGCTG	-	-			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
CSPG5	10675	broad.mit.edu	37	3	47619021	47619040	+	Frame_Shift_Del	DEL	AGAAGCTGGGCTCAGCTTGT	-	-	rs35863063	by1000genomes	TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
C6orf223	221416	broad.mit.edu	37	6	43970504	43970509	+	In_Frame_Del	DEL	GCGGCG	-	-			TCGA-C4-A0EZ-01	TCGA-C4-A0EZ-01									Somatic	Phase_I	Capture				Illumina GAIIx
