Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
INPP5F	22876	broad.mit.edu	37	10	121557048	121557048	+	Missense_Mutation	SNP	A	G	G			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMEM123	114908	broad.mit.edu	37	11	102272686	102272686	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
HMBS	3145	broad.mit.edu	37	11	118959008	118959008	+	Missense_Mutation	SNP	G	A	A	rs118204103		TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR5D18	219438	broad.mit.edu	37	11	55587220	55587220	+	Missense_Mutation	SNP	A	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR2AG2	338755	broad.mit.edu	37	11	6789447	6789447	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC62	84660	broad.mit.edu	37	12	123290767	123290767	+	Silent	SNP	G	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCC9	10060	broad.mit.edu	37	12	21997778	21997778	+	Silent	SNP	A	G	G			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
CAPRIN2	65981	broad.mit.edu	37	12	30873763	30873763	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC2A13	114134	broad.mit.edu	37	12	40499322	40499322	+	Missense_Mutation	SNP	A	C	C			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41421677	41421677	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACVRL1	94	broad.mit.edu	37	12	52307405	52307405	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP5B	506	broad.mit.edu	37	12	57039660	57039660	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
CD163	9332	broad.mit.edu	37	12	7656275	7656275	+	Silent	SNP	G	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
POC1B	282809	broad.mit.edu	37	12	89890971	89890971	+	Silent	SNP	G	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
FREM2	341640	broad.mit.edu	37	13	39261504	39261504	+	Missense_Mutation	SNP	G	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
RB1	5925	broad.mit.edu	37	13	48947629	48947629	+	Splice_Site	SNP	G	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
LMO7	4008	broad.mit.edu	37	13	76427232	76427232	+	Nonsense_Mutation	SNP	G	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
BMP4	652	broad.mit.edu	37	14	54418914	54418914	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANGEL1	23357	broad.mit.edu	37	14	77275517	77275517	+	Silent	SNP	T	C	C			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP10A	57194	broad.mit.edu	37	15	25925012	25925012	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAP2K1	5604	broad.mit.edu	37	15	66777338	66777338	+	Missense_Mutation	SNP	T	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBXO22	26263	broad.mit.edu	37	15	76225291	76225291	+	Missense_Mutation	SNP	T	G	G			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
ST20	400410	broad.mit.edu	37	15	80191455	80191455	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
CP110	9738	broad.mit.edu	37	16	19547561	19547561	+	Silent	SNP	C	G	G			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
GP2	2813	broad.mit.edu	37	16	20337750	20337750	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
USP31	57478	broad.mit.edu	37	16	23079693	23079693	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
CLUAP1	23059	broad.mit.edu	37	16	3556338	3556338	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
CREBBP	1387	broad.mit.edu	37	16	3788647	3788647	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
FTO	79068	broad.mit.edu	37	16	53967950	53967950	+	Silent	SNP	G	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDH1	999	broad.mit.edu	37	16	68842337	68842337	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	70917863	70917863	+	Silent	SNP	G	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
KRT32	3882	broad.mit.edu	37	17	39623211	39623211	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
TLK2	11011	broad.mit.edu	37	17	60673977	60673977	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
P4HB	5034	broad.mit.edu	37	17	79813104	79813104	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
DSC3	1825	broad.mit.edu	37	18	28576944	28576944	+	Nonsense_Mutation	SNP	G	C	C			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50450132	50450132	+	Silent	SNP	C	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	51013172	51013172	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGAP28	79822	broad.mit.edu	37	18	6876136	6876136	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF714	148206	broad.mit.edu	37	19	21300901	21300901	+	Silent	SNP	G	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
C19orf28	126321	broad.mit.edu	37	19	3550991	3550991	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
NFKBID	84807	broad.mit.edu	37	19	36387690	36387690	+	Missense_Mutation	SNP	A	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM98C	147965	broad.mit.edu	37	19	38893808	38893808	+	Silent	SNP	G	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRFN1	57622	broad.mit.edu	37	19	39798886	39798886	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF230	7773	broad.mit.edu	37	19	44514476	44514476	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF211	10520	broad.mit.edu	37	19	58152819	58152819	+	Missense_Mutation	SNP	T	C	C			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCL25	6370	broad.mit.edu	37	19	8122718	8122718	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTCHD2	57540	broad.mit.edu	37	1	11596720	11596720	+	Silent	SNP	C	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR6N1	128372	broad.mit.edu	37	1	158736452	158736452	+	Missense_Mutation	SNP	G	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16907973	16907973	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16914278	16914278	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
FMO3	2328	broad.mit.edu	37	1	171086316	171086316	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175067712	175067712	+	Silent	SNP	C	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
PADI4	23569	broad.mit.edu	37	1	17690129	17690129	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
KDM5B	10765	broad.mit.edu	37	1	202710600	202710600	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR2T1	26696	broad.mit.edu	37	1	248570286	248570286	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
SRRM1	10250	broad.mit.edu	37	1	24993374	24993374	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
SRRM1	10250	broad.mit.edu	37	1	24993386	24993386	+	Missense_Mutation	SNP	G	T	T	rs78787676	by1000genomes	TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC27	148870	broad.mit.edu	37	1	3672130	3672130	+	Silent	SNP	C	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
LSM10	84967	broad.mit.edu	37	1	36859515	36859515	+	Silent	SNP	G	C	C			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
CAMTA1	23261	broad.mit.edu	37	1	7798119	7798119	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTLL7	79739	broad.mit.edu	37	1	84373315	84373315	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
CD93	22918	broad.mit.edu	37	20	23066316	23066316	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
C20orf160	140706	broad.mit.edu	37	20	30602791	30602791	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
ProSAPiP1	9762	broad.mit.edu	37	20	3147630	3147630	+	Silent	SNP	C	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
EMILIN3	90187	broad.mit.edu	37	20	39992445	39992445	+	Missense_Mutation	SNP	A	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
MMP9	4318	broad.mit.edu	37	20	44640354	44640354	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC9A8	23315	broad.mit.edu	37	20	48500559	48500559	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
SON	6651	broad.mit.edu	37	21	34926719	34926719	+	Missense_Mutation	SNP	A	G	G			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCNT	5116	broad.mit.edu	37	21	47783573	47783573	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC5A4	6527	broad.mit.edu	37	22	32647856	32647856	+	Silent	SNP	G	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179597433	179597433	+	Missense_Mutation	SNP	A	G	G			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL4A4	1286	broad.mit.edu	37	2	227953429	227953429	+	Silent	SNP	G	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
DTYMK	1841	broad.mit.edu	37	2	242625274	242625274	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
ASB3	51130	broad.mit.edu	37	2	53992709	53992709	+	Missense_Mutation	SNP	T	C	C			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
C2orf78	388960	broad.mit.edu	37	2	74043846	74043846	+	Silent	SNP	G	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR128	84873	broad.mit.edu	37	3	100364943	100364943	+	Silent	SNP	T	C	C			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
STXBP5L	9515	broad.mit.edu	37	3	120973778	120973778	+	Missense_Mutation	SNP	A	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACPP	55	broad.mit.edu	37	3	132050577	132050577	+	Silent	SNP	G	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBLN2	2199	broad.mit.edu	37	3	13669333	13669333	+	Silent	SNP	C	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF639	51193	broad.mit.edu	37	3	179050893	179050893	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
AP2M1	1173	broad.mit.edu	37	3	183898691	183898691	+	Missense_Mutation	SNP	C	T	T	rs75115208	by1000genomes	TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
ITGA9	3680	broad.mit.edu	37	3	37826549	37826549	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLXNB1	5364	broad.mit.edu	37	3	48453976	48453976	+	Silent	SNP	G	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48605196	48605196	+	Nonsense_Mutation	SNP	C	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRIG1	26018	broad.mit.edu	37	3	66430809	66430809	+	Missense_Mutation	SNP	A	G	G			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
INTU	27152	broad.mit.edu	37	4	128632073	128632073	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
USP38	84640	broad.mit.edu	37	4	144134859	144134859	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBXW7	55294	broad.mit.edu	37	4	153253770	153253770	+	Nonsense_Mutation	SNP	C	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
STAP1	26228	broad.mit.edu	37	4	68436809	68436809	+	Missense_Mutation	SNP	A	G	G			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC4A4	8671	broad.mit.edu	37	4	72399971	72399971	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
KDM3B	51780	broad.mit.edu	37	5	137761206	137761206	+	Missense_Mutation	SNP	G	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
IRX1	79192	broad.mit.edu	37	5	3600249	3600249	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45303773	45303773	+	Nonsense_Mutation	SNP	G	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAP1B	4131	broad.mit.edu	37	5	71494957	71494957	+	Silent	SNP	C	G	G			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
HIST1H2AL	8332	broad.mit.edu	37	6	27833391	27833391	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR10C1	442194	broad.mit.edu	37	6	29408490	29408490	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR111	222611	broad.mit.edu	37	6	47649716	47649716	+	Missense_Mutation	SNP	A	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBXO24	26261	broad.mit.edu	37	7	100189393	100189393	+	Silent	SNP	C	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACHE	43	broad.mit.edu	37	7	100491629	100491629	+	Silent	SNP	G	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103243875	103243875	+	Missense_Mutation	SNP	A	G	G			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
RNF133	168433	broad.mit.edu	37	7	122338738	122338738	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
AHR	196	broad.mit.edu	37	7	17378759	17378759	+	Missense_Mutation	SNP	G	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	31912954	31912954	+	Missense_Mutation	SNP	A	G	G			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
SEMA3A	10371	broad.mit.edu	37	7	83675657	83675657	+	Missense_Mutation	SNP	T	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZKSCAN5	23660	broad.mit.edu	37	7	99117480	99117480	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131861957	131861957	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGAP39	80728	broad.mit.edu	37	8	145770746	145770746	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41615618	41615618	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
FRMPD1	22844	broad.mit.edu	37	9	37746199	37746199	+	Silent	SNP	C	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
C9orf41	138199	broad.mit.edu	37	9	77642968	77642968	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
C9orf41	138199	broad.mit.edu	37	9	77642970	77642970	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
GCNT1	2650	broad.mit.edu	37	9	79118499	79118499	+	Missense_Mutation	SNP	A	C	C			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
AGTPBP1	23287	broad.mit.edu	37	9	88272367	88272367	+	Silent	SNP	G	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDK20	23552	broad.mit.edu	37	9	90584799	90584799	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCD1	215	broad.mit.edu	37	X	152994806	152994806	+	Silent	SNP	C	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMEM47	83604	broad.mit.edu	37	X	34657461	34657461	+	Silent	SNP	G	T	T			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
BCOR	54880	broad.mit.edu	37	X	39933138	39933138	+	Silent	SNP	T	C	C			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM21A	387680	broad.mit.edu	37	10	51855357	51855359	+	Splice_Site	DEL	AGG	-	-			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR52K1	390036	broad.mit.edu	37	11	4510227	4510227	+	Frame_Shift_Del	DEL	T	-	-			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
AVPR1A	552	broad.mit.edu	37	12	63543915	63543926	+	In_Frame_Del	DEL	GGTACCCAAGAT	-	-			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
NEK3	4752	broad.mit.edu	37	13	52707832	52707832	+	Frame_Shift_Del	DEL	C	-	-	rs34488913	byFrequency	TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
HCRT	3060	broad.mit.edu	37	17	40336501	40336503	+	In_Frame_Del	DEL	GCA	-	-			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
SMTNL2	342527	broad.mit.edu	37	17	4510756	4510756	+	Frame_Shift_Del	DEL	T	-	-			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
RECQL5	9400	broad.mit.edu	37	17	73626918	73626919	+	Splice_Site	INS	-	TG	TG			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
TPRX1	284355	broad.mit.edu	37	19	48305543	48305566	+	In_Frame_Del	DEL	GGGCCTGGGATCGGGCCTGGGTTC	-	-	rs75909117		TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
LHX9	56956	broad.mit.edu	37	1	197881675	197881675	+	Frame_Shift_Del	DEL	C	-	-			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR13G1	441933	broad.mit.edu	37	1	247835572	247835572	+	Frame_Shift_Del	DEL	G	-	-	rs117404602	by1000genomes	TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
CSNK1E	1454	broad.mit.edu	37	22	38696882	38696883	+	Frame_Shift_Del	DEL	GC	-	-			TCGA-C4-A0F0-01	TCGA-C4-A0F0-01									Somatic	Phase_I	Capture				Illumina GAIIx
