Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
EIF3A	8661	broad.mit.edu	37	10	120801973	120801973	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
MMP21	118856	broad.mit.edu	37	10	127461263	127461263	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
MTPAP	55149	broad.mit.edu	37	10	30602779	30602779	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
DUPD1	338599	broad.mit.edu	37	10	76797697	76797697	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
MINPP1	9562	broad.mit.edu	37	10	89268152	89268152	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
MLL	4297	broad.mit.edu	37	11	118376454	118376454	+	Nonsense_Mutation	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR10S1	219873	broad.mit.edu	37	11	123848195	123848195	+	Silent	SNP	G	C	C			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR8B4	283162	broad.mit.edu	37	11	124294748	124294748	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDON	50937	broad.mit.edu	37	11	125891384	125891384	+	Silent	SNP	G	C	C			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIF18A	81930	broad.mit.edu	37	11	28090880	28090880	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
FJX1	24147	broad.mit.edu	37	11	35640755	35640755	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
API5	8539	broad.mit.edu	37	11	43356859	43356859	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR8K3	219473	broad.mit.edu	37	11	56086697	56086697	+	Missense_Mutation	SNP	T	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR1S1	219959	broad.mit.edu	37	11	57982373	57982373	+	Missense_Mutation	SNP	A	G	G			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR1S1	219959	broad.mit.edu	37	11	57982413	57982413	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
IRF7	3665	broad.mit.edu	37	11	612784	612784	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
BEST1	7439	broad.mit.edu	37	11	61729849	61729849	+	Nonsense_Mutation	SNP	C	G	G			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
METTL12	751071	broad.mit.edu	37	11	62433975	62433975	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
HEPHL1	341208	broad.mit.edu	37	11	93778916	93778916	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC60	160777	broad.mit.edu	37	12	119942996	119942996	+	Silent	SNP	G	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
RSRC2	65117	broad.mit.edu	37	12	122992836	122992836	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
DENR	8562	broad.mit.edu	37	12	123253605	123253605	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
FOXM1	2305	broad.mit.edu	37	12	2967845	2967845	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
C12orf35	55196	broad.mit.edu	37	12	32138214	32138214	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMEM117	84216	broad.mit.edu	37	12	44781901	44781901	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
DYRK4	8798	broad.mit.edu	37	12	4722727	4722727	+	Silent	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
MLL2	8085	broad.mit.edu	37	12	49424159	49424159	+	Nonsense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
TROAP	10024	broad.mit.edu	37	12	49722836	49722836	+	Silent	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATN1	1822	broad.mit.edu	37	12	7045608	7045608	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	28897021	28897021	+	Silent	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
NBEA	26960	broad.mit.edu	37	13	35619479	35619479	+	Nonsense_Mutation	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
ENOX1	55068	broad.mit.edu	37	13	43935581	43935581	+	Silent	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
KPNA3	3839	broad.mit.edu	37	13	50306520	50306520	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
CLN5	1203	broad.mit.edu	37	13	77574603	77574603	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLD4	122618	broad.mit.edu	37	14	105397201	105397201	+	Silent	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
NIN	51199	broad.mit.edu	37	14	51226630	51226630	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC38A6	145389	broad.mit.edu	37	14	61486269	61486269	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
SMOC1	64093	broad.mit.edu	37	14	70459181	70459181	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
C14orf159	80017	broad.mit.edu	37	14	91681828	91681828	+	Silent	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR68	8111	broad.mit.edu	37	14	91700960	91700960	+	Silent	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIP11	9321	broad.mit.edu	37	14	92506013	92506013	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
BUB1B	701	broad.mit.edu	37	15	40500941	40500941	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
INO80	54617	broad.mit.edu	37	15	41388034	41388034	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
NUSAP1	51203	broad.mit.edu	37	15	41657737	41657737	+	Silent	SNP	G	C	C			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
LIPC	3990	broad.mit.edu	37	15	58861007	58861007	+	Nonsense_Mutation	SNP	C	G	G			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM63B	54629	broad.mit.edu	37	15	59146724	59146724	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
CILP	8483	broad.mit.edu	37	15	65491367	65491367	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
TLE3	7090	broad.mit.edu	37	15	70346924	70346924	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
CPEB1	64506	broad.mit.edu	37	15	83296112	83296112	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
PKD1	5310	broad.mit.edu	37	16	2155925	2155925	+	Nonsense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
SRRM2	23524	broad.mit.edu	37	16	2813979	2813979	+	Silent	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
CREBBP	1387	broad.mit.edu	37	16	3781375	3781375	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC135	84229	broad.mit.edu	37	16	57755605	57755605	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
SOLH	6650	broad.mit.edu	37	16	601635	601635	+	Silent	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDH3	1001	broad.mit.edu	37	16	68718667	68718667	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0182	23199	broad.mit.edu	37	16	85689517	85689517	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
KLHDC4	54758	broad.mit.edu	37	16	87743101	87743101	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
TCF25	22980	broad.mit.edu	37	16	89977011	89977011	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10419637	10419637	+	Missense_Mutation	SNP	T	G	G			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10442618	10442618	+	Silent	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
SGSM2	9905	broad.mit.edu	37	17	2265472	2265472	+	Silent	SNP	C	T	T	rs113450178		TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF207	7756	broad.mit.edu	37	17	30685544	30685544	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDK12	51755	broad.mit.edu	37	17	37673711	37673711	+	Silent	SNP	T	C	C			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
EZH1	2145	broad.mit.edu	37	17	40870014	40870014	+	Missense_Mutation	SNP	T	C	C			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLCD3	113026	broad.mit.edu	37	17	43195396	43195396	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDK2	5164	broad.mit.edu	37	17	48174834	48174834	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIF2B	84643	broad.mit.edu	37	17	51901324	51901324	+	Silent	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR4D1	26689	broad.mit.edu	37	17	56233157	56233157	+	Silent	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIM37	4591	broad.mit.edu	37	17	57148206	57148206	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
EIF5A	1984	broad.mit.edu	37	17	7214697	7214697	+	Nonsense_Mutation	SNP	C	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYNGR2	9144	broad.mit.edu	37	17	76167700	76167700	+	Silent	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
BIRC5	332	broad.mit.edu	37	17	76219552	76219552	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAH2	146754	broad.mit.edu	37	17	7702000	7702000	+	Silent	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPL26	6154	broad.mit.edu	37	17	8285553	8285553	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
C18orf10	25941	broad.mit.edu	37	18	34387820	34387820	+	Silent	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
CELF4	56853	broad.mit.edu	37	18	34839222	34839222	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
MLL4	9757	broad.mit.edu	37	19	36221009	36221009	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF790	388536	broad.mit.edu	37	19	37310567	37310567	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
CREB3L3	84699	broad.mit.edu	37	19	4168351	4168351	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
CREB3L3	84699	broad.mit.edu	37	19	4168358	4168358	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
PSG9	5678	broad.mit.edu	37	19	43773549	43773549	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
SEMA6B	10501	broad.mit.edu	37	19	4550273	4550273	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
AP2S1	1175	broad.mit.edu	37	19	47349397	47349397	+	Silent	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
CRX	1406	broad.mit.edu	37	19	48343102	48343102	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRRC4B	94030	broad.mit.edu	37	19	51022595	51022595	+	Silent	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
LILRA6	79168	broad.mit.edu	37	19	54745730	54745730	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZSCAN5A	79149	broad.mit.edu	37	19	56733572	56733572	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
SH2D3A	10045	broad.mit.edu	37	19	6760801	6760801	+	Silent	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9057196	9057196	+	Silent	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF699	374879	broad.mit.edu	37	19	9407165	9407165	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
VCAM1	7412	broad.mit.edu	37	1	101194673	101194673	+	Silent	SNP	T	C	C			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
CELSR2	1952	broad.mit.edu	37	1	109806818	109806818	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
CELSR2	1952	broad.mit.edu	37	1	109806952	109806952	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTCHD2	57540	broad.mit.edu	37	1	11561631	11561631	+	Missense_Mutation	SNP	G	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
POLR3C	10623	broad.mit.edu	37	1	145608196	145608196	+	Silent	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
VPS45	11311	broad.mit.edu	37	1	150039931	150039931	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
HRNR	388697	broad.mit.edu	37	1	152193724	152193724	+	Missense_Mutation	SNP	A	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
GATAD2B	57459	broad.mit.edu	37	1	153784590	153784590	+	Missense_Mutation	SNP	G	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
DCAF6	55827	broad.mit.edu	37	1	168034939	168034939	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16893824	16893824	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP13A2	23400	broad.mit.edu	37	1	17330838	17330838	+	Silent	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201056980	201056980	+	Silent	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
GOLT1A	127845	broad.mit.edu	37	1	204170871	204170871	+	Silent	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
C4BPA	722	broad.mit.edu	37	1	207314560	207314560	+	Silent	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
MIA3	375056	broad.mit.edu	37	1	222826648	222826648	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
NID1	4811	broad.mit.edu	37	1	236208952	236208952	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
C1orf38	9473	broad.mit.edu	37	1	28212380	28212380	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
TINAGL1	64129	broad.mit.edu	37	1	32043028	32043028	+	Silent	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPOCD1	90853	broad.mit.edu	37	1	32264127	32264127	+	Silent	SNP	G	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRRC41	10489	broad.mit.edu	37	1	46746092	46746092	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
RIN2	54453	broad.mit.edu	37	20	19955572	19955572	+	Silent	SNP	G	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
C20orf186	149954	broad.mit.edu	37	20	31699226	31699226	+	Silent	SNP	T	C	C			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
RBM12	10137	broad.mit.edu	37	20	34242690	34242690	+	Silent	SNP	G	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADA	100	broad.mit.edu	37	20	43255222	43255222	+	Silent	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF335	63925	broad.mit.edu	37	20	44589147	44589147	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF295	49854	broad.mit.edu	37	21	43413917	43413917	+	Silent	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
RIMBP3	85376	broad.mit.edu	37	22	20457929	20457929	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
MED15	51586	broad.mit.edu	37	22	20939289	20939289	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
CRYBB1	1414	broad.mit.edu	37	22	27008146	27008146	+	Silent	SNP	G	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
TBC1D10A	83874	broad.mit.edu	37	22	30689766	30689766	+	Silent	SNP	C	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
MICALL1	85377	broad.mit.edu	37	22	38327931	38327931	+	Silent	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
MICALL1	85377	broad.mit.edu	37	22	38328839	38328839	+	Silent	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
SREBF2	6721	broad.mit.edu	37	22	42276748	42276748	+	Missense_Mutation	SNP	T	C	C			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
GTSE1	51512	broad.mit.edu	37	22	46722532	46722532	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
MERTK	10461	broad.mit.edu	37	2	112766049	112766049	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
GALNT5	11227	broad.mit.edu	37	2	158165235	158165235	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
UPP2	151531	broad.mit.edu	37	2	158980394	158980394	+	Silent	SNP	C	G	G			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNS3	3790	broad.mit.edu	37	2	18112633	18112633	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
INPP1	3628	broad.mit.edu	37	2	191227381	191227381	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21239390	21239390	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21250702	21250702	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
MOGAT1	116255	broad.mit.edu	37	2	223553091	223553091	+	Missense_Mutation	SNP	G	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC16A14	151473	broad.mit.edu	37	2	230902218	230902218	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
UGT1A3	54659	broad.mit.edu	37	2	234638460	234638460	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
SH3BP4	23677	broad.mit.edu	37	2	235962412	235962412	+	Silent	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
TP53I3	9540	broad.mit.edu	37	2	24305998	24305998	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
AFTPH	54812	broad.mit.edu	37	2	64779737	64779737	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
TET3	200424	broad.mit.edu	37	2	74273845	74273845	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
VWA3B	200403	broad.mit.edu	37	2	98737802	98737802	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATG7	10533	broad.mit.edu	37	3	11354786	11354786	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
SRPRB	58477	broad.mit.edu	37	3	133534474	133534474	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATR	545	broad.mit.edu	37	3	142231262	142231262	+	Silent	SNP	T	G	G			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
SUCNR1	56670	broad.mit.edu	37	3	151599155	151599155	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
DHX36	170506	broad.mit.edu	37	3	154018909	154018909	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACTL6A	86	broad.mit.edu	37	3	179291159	179291159	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
USP13	8975	broad.mit.edu	37	3	179460036	179460036	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
MASP1	5648	broad.mit.edu	37	3	186954017	186954017	+	Nonsense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNH8	131096	broad.mit.edu	37	3	19492801	19492801	+	Missense_Mutation	SNP	A	G	G			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
SGOL1	151648	broad.mit.edu	37	3	20218129	20218129	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
GLB1	2720	broad.mit.edu	37	3	33038825	33038825	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
MLH1	4292	broad.mit.edu	37	3	37035075	37035075	+	Missense_Mutation	SNP	G	A	A	rs63750057		TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRRN1	57633	broad.mit.edu	37	3	3887565	3887565	+	Missense_Mutation	SNP	T	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
VIPR1	7433	broad.mit.edu	37	3	42576579	42576579	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
CELSR3	1951	broad.mit.edu	37	3	48698816	48698817	+	Missense_Mutation	DNP	TC	AT	AT	rs111946927		TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
C3orf71	646450	broad.mit.edu	37	3	48956327	48956327	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
LAMB2	3913	broad.mit.edu	37	3	49166159	49166159	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
EGF	1950	broad.mit.edu	37	4	110890162	110890162	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114158306	114158306	+	Missense_Mutation	SNP	A	G	G			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
BOD1L	259282	broad.mit.edu	37	4	13602850	13602850	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
CRIPAK	285464	broad.mit.edu	37	4	1389009	1389009	+	Missense_Mutation	SNP	G	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBXW7	55294	broad.mit.edu	37	4	153247289	153247289	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
CC2D2A	57545	broad.mit.edu	37	4	15569099	15569099	+	Silent	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM193A	8603	broad.mit.edu	37	4	2701583	2701583	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
TLR10	81793	broad.mit.edu	37	4	38777082	38777082	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55961077	55961077	+	Missense_Mutation	SNP	T	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55961105	55961105	+	Silent	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94693231	94693231	+	Missense_Mutation	SNP	A	G	G			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPIP5K2	23262	broad.mit.edu	37	5	102526629	102526629	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
GRIA1	2890	broad.mit.edu	37	5	153181955	153181955	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPRIN1	114787	broad.mit.edu	37	5	176025548	176025548	+	Nonsense_Mutation	SNP	C	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
EGFLAM	133584	broad.mit.edu	37	5	38407204	38407204	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
IL6ST	3572	broad.mit.edu	37	5	55247891	55247891	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
VCAN	1462	broad.mit.edu	37	5	82817190	82817190	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR98	84059	broad.mit.edu	37	5	90106172	90106172	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
RFESD	317671	broad.mit.edu	37	5	94989768	94989768	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
ASF1A	25842	broad.mit.edu	37	6	119226948	119226948	+	Silent	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152650896	152650896	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTLL2	83887	broad.mit.edu	37	6	167755005	167755005	+	Silent	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
SMOC2	64094	broad.mit.edu	37	6	169064768	169064768	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
MSH5	4439	broad.mit.edu	37	6	31727896	31727896	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC44A4	80736	broad.mit.edu	37	6	31838641	31838641	+	Silent	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
PHIP	55023	broad.mit.edu	37	6	79727268	79727268	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
C6orf165	154313	broad.mit.edu	37	6	88136336	88136336	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
MDN1	23195	broad.mit.edu	37	6	90468570	90468570	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
AGFG2	3268	broad.mit.edu	37	7	100151098	100151098	+	Nonsense_Mutation	SNP	C	G	G			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR37	2861	broad.mit.edu	37	7	124404704	124404704	+	Silent	SNP	G	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
STRA8	346673	broad.mit.edu	37	7	134927560	134927560	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
TBXAS1	6916	broad.mit.edu	37	7	139655334	139655334	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPHA1	2041	broad.mit.edu	37	7	143096402	143096402	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPHA1	2041	broad.mit.edu	37	7	143096426	143096426	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
CUL1	8454	broad.mit.edu	37	7	148484186	148484186	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
SSPO	23145	broad.mit.edu	37	7	149512401	149512401	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151855998	151855998	+	Nonsense_Mutation	SNP	C	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151860062	151860062	+	Nonsense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18975511	18975511	+	Silent	SNP	C	G	G			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDCA7L	55536	broad.mit.edu	37	7	21945945	21945945	+	Nonsense_Mutation	SNP	C	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
RNF216	54476	broad.mit.edu	37	7	5662766	5662766	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
RNF216	54476	broad.mit.edu	37	7	5663694	5663694	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
RNF216	54476	broad.mit.edu	37	7	5663714	5663714	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	77885323	77885323	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZKSCAN1	7586	broad.mit.edu	37	7	99621928	99621928	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100403871	100403871	+	Silent	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
TSNARE1	203062	broad.mit.edu	37	8	143436064	143436064	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF517	340385	broad.mit.edu	37	8	146033636	146033636	+	Silent	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
HNF4G	3174	broad.mit.edu	37	8	76465276	76465276	+	Splice_Site	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF189	7743	broad.mit.edu	37	9	104170392	104170392	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
PHF19	26147	broad.mit.edu	37	9	123620306	123620306	+	Silent	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
SNAPC4	6621	broad.mit.edu	37	9	139273744	139273744	+	Silent	SNP	G	C	C			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA1797	54914	broad.mit.edu	37	9	20720513	20720513	+	Silent	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
RGP1	9827	broad.mit.edu	37	9	35752111	35752111	+	Silent	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
RGP1	9827	broad.mit.edu	37	9	35752709	35752709	+	Silent	SNP	C	G	G			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
RBM10	8241	broad.mit.edu	37	X	47041369	47041369	+	Silent	SNP	C	G	G			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
RBM10	8241	broad.mit.edu	37	X	47045533	47045533	+	Nonsense_Mutation	SNP	A	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
HDAC6	10013	broad.mit.edu	37	X	48681849	48681849	+	Missense_Mutation	SNP	G	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM123B	139285	broad.mit.edu	37	X	63413139	63413139	+	Nonsense_Mutation	SNP	G	A	A			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZMYM3	9203	broad.mit.edu	37	X	70470410	70470410	+	Silent	SNP	C	T	T			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAGEE1	57692	broad.mit.edu	37	X	75650837	75650837	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
LGALS9B	284194	broad.mit.edu	37	17	20370782	20370783	+	Frame_Shift_Ins	INS	-	TC	TC	rs67161709		TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82580534	82580534	+	Frame_Shift_Del	DEL	C	-	-			TCGA-C4-A0F1-01	TCGA-C4-A0F1-01									Somatic	Phase_I	Capture				Illumina GAIIx
