Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
GAD2	2572	broad.mit.edu	37	10	26581833	26581833	+	Silent	SNP	T	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANUBL1	93550	broad.mit.edu	37	10	46121537	46121537	+	Missense_Mutation	SNP	G	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
RBP3	5949	broad.mit.edu	37	10	48382225	48382225	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
SFMBT2	57713	broad.mit.edu	37	10	7205753	7205753	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLCE1	51196	broad.mit.edu	37	10	96064271	96064271	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
DDI1	414301	broad.mit.edu	37	11	103908030	103908030	+	Silent	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
GUCY1A2	2977	broad.mit.edu	37	11	106558469	106558469	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
ROBO4	54538	broad.mit.edu	37	11	124757704	124757704	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
APLP2	334	broad.mit.edu	37	11	129999958	129999958	+	Missense_Mutation	SNP	G	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
QSER1	79832	broad.mit.edu	37	11	32956871	32956871	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
PGAP2	27315	broad.mit.edu	37	11	3845209	3845209	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
PKP3	11187	broad.mit.edu	37	11	397293	397293	+	Silent	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
AMBRA1	55626	broad.mit.edu	37	11	46569852	46569852	+	Silent	SNP	G	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR5D14	219436	broad.mit.edu	37	11	55563167	55563167	+	Missense_Mutation	SNP	G	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR5M8	219484	broad.mit.edu	37	11	56258184	56258184	+	Silent	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR5M10	390167	broad.mit.edu	37	11	56344512	56344512	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
PC	5091	broad.mit.edu	37	11	66619974	66619974	+	Silent	SNP	G	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
SSH3	54961	broad.mit.edu	37	11	67075644	67075644	+	Splice_Site	SNP	G	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
NLRP14	338323	broad.mit.edu	37	11	7079046	7079046	+	Missense_Mutation	SNP	A	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
RNF121	55298	broad.mit.edu	37	11	71698134	71698134	+	Silent	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
C11orf30	56946	broad.mit.edu	37	11	76257009	76257009	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRSS23	11098	broad.mit.edu	37	11	86518961	86518961	+	Silent	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
KDM4D	55693	broad.mit.edu	37	11	94731995	94731995	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
WEE1	7465	broad.mit.edu	37	11	9608064	9608064	+	Silent	SNP	T	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACACB	32	broad.mit.edu	37	12	109702924	109702924	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP2A2	488	broad.mit.edu	37	12	110720594	110720594	+	Missense_Mutation	SNP	A	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC63	160762	broad.mit.edu	37	12	111291361	111291361	+	Missense_Mutation	SNP	G	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
CUX2	23316	broad.mit.edu	37	12	111655742	111655742	+	Splice_Site	SNP	G	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
NAA25	80018	broad.mit.edu	37	12	112477050	112477050	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
C12orf51	283450	broad.mit.edu	37	12	112694164	112694164	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
VSIG10	54621	broad.mit.edu	37	12	118517226	118517226	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
COQ5	84274	broad.mit.edu	37	12	120966898	120966898	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAH10	196385	broad.mit.edu	37	12	124298176	124298176	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
NCOR2	9612	broad.mit.edu	37	12	124957593	124957593	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	129559559	129559559	+	Missense_Mutation	SNP	T	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
C12orf60	144608	broad.mit.edu	37	12	14976569	14976569	+	Missense_Mutation	SNP	A	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDE3A	5139	broad.mit.edu	37	12	20523043	20523043	+	Silent	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL2A1	1280	broad.mit.edu	37	12	48381056	48381056	+	Missense_Mutation	SNP	G	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL2A1	1280	broad.mit.edu	37	12	48390378	48390378	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF641	121274	broad.mit.edu	37	12	48739131	48739131	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
MLL2	8085	broad.mit.edu	37	12	49416552	49416552	+	Nonsense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
DIP2B	57609	broad.mit.edu	37	12	51065079	51065079	+	Nonsense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
LETMD1	25875	broad.mit.edu	37	12	51451849	51451849	+	Missense_Mutation	SNP	T	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
KRT78	196374	broad.mit.edu	37	12	53241751	53241751	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
GDF11	10220	broad.mit.edu	37	12	56142751	56142751	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
B4GALNT1	2583	broad.mit.edu	37	12	58021630	58021630	+	Silent	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
IL26	55801	broad.mit.edu	37	12	68595841	68595841	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAP1B	5908	broad.mit.edu	37	12	69042512	69042512	+	Missense_Mutation	SNP	A	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
NUP107	57122	broad.mit.edu	37	12	69109478	69109478	+	Silent	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70932750	70932750	+	Silent	SNP	G	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
TSPAN8	7103	broad.mit.edu	37	12	71526475	71526475	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZFC3H1	196441	broad.mit.edu	37	12	72057372	72057372	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
C12orf74	338809	broad.mit.edu	37	12	93100450	93100450	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
C12orf74	338809	broad.mit.edu	37	12	93100519	93100519	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
TUBGCP3	10426	broad.mit.edu	37	13	113143929	113143929	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
PSPC1	55269	broad.mit.edu	37	13	20315736	20315736	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
FRY	10129	broad.mit.edu	37	13	32802752	32802752	+	Missense_Mutation	SNP	A	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
LECT1	11061	broad.mit.edu	37	13	53282807	53282807	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDH9	5101	broad.mit.edu	37	13	67801771	67801771	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
EVL	51466	broad.mit.edu	37	14	100595958	100595958	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23885425	23885425	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
NIN	51199	broad.mit.edu	37	14	51225101	51225101	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
DHRS7	51635	broad.mit.edu	37	14	60620715	60620715	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNH5	27133	broad.mit.edu	37	14	63246455	63246455	+	Silent	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACOT2	10965	broad.mit.edu	37	14	74040127	74040127	+	Nonsense_Mutation	SNP	G	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
C14orf4	64207	broad.mit.edu	37	14	77492242	77492242	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
SERPINA4	5267	broad.mit.edu	37	14	95033347	95033347	+	Silent	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28211933	28211933	+	Silent	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
TJP1	7082	broad.mit.edu	37	15	30011184	30011184	+	Silent	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
OTUD7A	161725	broad.mit.edu	37	15	31776455	31776455	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54919034	54919034	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLTM	79811	broad.mit.edu	37	15	59179725	59179725	+	Missense_Mutation	SNP	A	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
CLN6	54982	broad.mit.edu	37	15	68504196	68504196	+	Silent	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
TBC1D21	161514	broad.mit.edu	37	15	74180837	74180837	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF710	374655	broad.mit.edu	37	15	90622959	90622959	+	Silent	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
FURIN	5045	broad.mit.edu	37	15	91421501	91421501	+	Silent	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
XYLT1	64131	broad.mit.edu	37	16	17353054	17353054	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
TNRC6A	27327	broad.mit.edu	37	16	24815594	24815594	+	Missense_Mutation	SNP	A	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGAP17	55114	broad.mit.edu	37	16	24988548	24988548	+	Silent	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
XPO6	23214	broad.mit.edu	37	16	28137114	28137114	+	Silent	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
AXIN1	8312	broad.mit.edu	37	16	347183	347183	+	Nonsense_Mutation	SNP	C	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
TEPP	374739	broad.mit.edu	37	16	58019836	58019836	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACD	65057	broad.mit.edu	37	16	67691914	67691914	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
CIRH1A	84916	broad.mit.edu	37	16	69199280	69199280	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
STUB1	10273	broad.mit.edu	37	16	731323	731323	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
STUB1	10273	broad.mit.edu	37	16	732373	732373	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10400658	10400658	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10400727	10400727	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
PHF12	57649	broad.mit.edu	37	17	27254016	27254016	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
WNK4	65266	broad.mit.edu	37	17	40936120	40936120	+	Silent	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPAG7	9552	broad.mit.edu	37	17	4863785	4863785	+	Nonsense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
CA10	56934	broad.mit.edu	37	17	49713340	49713340	+	Missense_Mutation	SNP	A	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
HELZ	9931	broad.mit.edu	37	17	65119237	65119237	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
PSMD12	5718	broad.mit.edu	37	17	65340841	65340841	+	Nonsense_Mutation	SNP	C	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCA8	10351	broad.mit.edu	37	17	66933153	66933153	+	Silent	SNP	A	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
COG1	9382	broad.mit.edu	37	17	71197988	71197988	+	Silent	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
USP43	124739	broad.mit.edu	37	17	9559744	9559744	+	Nonsense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
DSG2	1829	broad.mit.edu	37	18	29101087	29101087	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
SETBP1	26040	broad.mit.edu	37	18	42530401	42530401	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
MALT1	10892	broad.mit.edu	37	18	56390314	56390314	+	Missense_Mutation	SNP	G	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
TNPO2	30000	broad.mit.edu	37	19	12826060	12826060	+	Silent	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
MUM1	84939	broad.mit.edu	37	19	1357029	1357029	+	Missense_Mutation	SNP	T	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
AP3D1	8943	broad.mit.edu	37	19	2130435	2130435	+	Silent	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
DOT1L	84444	broad.mit.edu	37	19	2216303	2216303	+	Silent	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
DOT1L	84444	broad.mit.edu	37	19	2216319	2216319	+	Nonsense_Mutation	SNP	G	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
JSRP1	126306	broad.mit.edu	37	19	2254207	2254207	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF569	148266	broad.mit.edu	37	19	37917250	37917250	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRX	57716	broad.mit.edu	37	19	40900472	40900472	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRX	57716	broad.mit.edu	37	19	40901150	40901150	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRX	57716	broad.mit.edu	37	19	40901173	40901173	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRX	57716	broad.mit.edu	37	19	40901264	40901264	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRX	57716	broad.mit.edu	37	19	40901420	40901420	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRX	57716	broad.mit.edu	37	19	40901603	40901603	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
CEACAM21	90273	broad.mit.edu	37	19	42082676	42082676	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
DPP9	91039	broad.mit.edu	37	19	4690967	4690967	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
ALDH16A1	126133	broad.mit.edu	37	19	49971800	49971800	+	Silent	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
KLK14	43847	broad.mit.edu	37	19	51582812	51582812	+	Silent	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF677	342926	broad.mit.edu	37	19	53741588	53741588	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRKCG	5582	broad.mit.edu	37	19	54403944	54403944	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
CNOT3	4849	broad.mit.edu	37	19	54656169	54656169	+	Silent	SNP	C	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
SAFB2	9667	broad.mit.edu	37	19	5591776	5591776	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF671	79891	broad.mit.edu	37	19	58232870	58232870	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYO1F	4542	broad.mit.edu	37	19	8587680	8587680	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADAMTS10	81794	broad.mit.edu	37	19	8670203	8670203	+	Missense_Mutation	SNP	G	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC35A3	23443	broad.mit.edu	37	1	100459152	100459152	+	Silent	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAN1A2	10905	broad.mit.edu	37	1	117944812	117944812	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
HRNR	388697	broad.mit.edu	37	1	152188199	152188199	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152281768	152281768	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR6Y1	391112	broad.mit.edu	37	1	158516978	158516978	+	Silent	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
DARS2	55157	broad.mit.edu	37	1	173795914	173795914	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM5B	57795	broad.mit.edu	37	1	177245564	177245564	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
CRB1	23418	broad.mit.edu	37	1	197390534	197390534	+	Nonsense_Mutation	SNP	C	T	T	rs114342808	by1000genomes	TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
KDM5B	10765	broad.mit.edu	37	1	202777328	202777328	+	Nonsense_Mutation	SNP	C	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
KLHDC8A	55220	broad.mit.edu	37	1	205306715	205306715	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
EIF2C1	26523	broad.mit.edu	37	1	36379798	36379798	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
DEM1	64789	broad.mit.edu	37	1	40980833	40980833	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0467	23334	broad.mit.edu	37	1	43895747	43895747	+	Silent	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
CTH	1491	broad.mit.edu	37	1	70897873	70897873	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
FPGT	8790	broad.mit.edu	37	1	74671227	74671227	+	Nonsense_Mutation	SNP	C	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
TASP1	55617	broad.mit.edu	37	20	13463978	13463978	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
NSFL1C	55968	broad.mit.edu	37	20	1433180	1433180	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
NCOA5	57727	broad.mit.edu	37	20	44699006	44699006	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDH22	64405	broad.mit.edu	37	20	44841804	44841804	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNG1	3755	broad.mit.edu	37	20	49626376	49626376	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
BCAS1	8537	broad.mit.edu	37	20	52645197	52645197	+	Missense_Mutation	SNP	T	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADAMTS1	9510	broad.mit.edu	37	21	28214229	28214229	+	Silent	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
TFF2	7032	broad.mit.edu	37	21	43767668	43767668	+	Silent	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26286747	26286747	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
SF3A1	10291	broad.mit.edu	37	22	30748978	30748978	+	Silent	SNP	G	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
CSNK1E	1454	broad.mit.edu	37	22	38698909	38698909	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
CELSR1	9620	broad.mit.edu	37	22	46792543	46792543	+	Silent	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR45	11250	broad.mit.edu	37	2	105858505	105858505	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
ST6GAL2	84620	broad.mit.edu	37	2	107460193	107460193	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
SNTG2	54221	broad.mit.edu	37	2	1241711	1241711	+	Silent	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
HNMT	3176	broad.mit.edu	37	2	138771674	138771674	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141598563	141598563	+	Silent	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
TPO	7173	broad.mit.edu	37	2	1520688	1520688	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNH7	90134	broad.mit.edu	37	2	163302755	163302755	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
NFE2L2	4780	broad.mit.edu	37	2	178095734	178095734	+	Missense_Mutation	SNP	T	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179482509	179482509	+	Missense_Mutation	SNP	T	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
CASP8	841	broad.mit.edu	37	2	202141587	202141587	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLCD4	84812	broad.mit.edu	37	2	219501002	219501002	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIF1A	547	broad.mit.edu	37	2	241702670	241702670	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIM54	57159	broad.mit.edu	37	2	27505677	27505677	+	Silent	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
PSME4	23198	broad.mit.edu	37	2	54159084	54159084	+	Nonsense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
REG3G	130120	broad.mit.edu	37	2	79254983	79254983	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
FER1L5	90342	broad.mit.edu	37	2	97361264	97361264	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
IFT122	55764	broad.mit.edu	37	3	129195257	129195257	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
IGSF10	285313	broad.mit.edu	37	3	151163672	151163672	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
NMD3	51068	broad.mit.edu	37	3	160942825	160942825	+	Nonsense_Mutation	SNP	C	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPP1R2	5504	broad.mit.edu	37	3	195245954	195245954	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPL35A	6165	broad.mit.edu	37	3	197678160	197678160	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
VILL	50853	broad.mit.edu	37	3	38039653	38039653	+	Silent	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC6A20	54716	broad.mit.edu	37	3	45811793	45811793	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
SMARCC1	6599	broad.mit.edu	37	3	47752241	47752241	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
RNF123	63891	broad.mit.edu	37	3	49757948	49757948	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
CACNA1D	776	broad.mit.edu	37	3	53766966	53766966	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC25A26	115286	broad.mit.edu	37	3	66293723	66293723	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
GRM7	2917	broad.mit.edu	37	3	6903515	6903515	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
CENPE	1062	broad.mit.edu	37	4	104103931	104103931	+	Silent	SNP	A	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARSJ	79642	broad.mit.edu	37	4	114899684	114899684	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRSS12	8492	broad.mit.edu	37	4	119203155	119203155	+	Missense_Mutation	SNP	G	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRBA	987	broad.mit.edu	37	4	151771938	151771938	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
TLR2	7097	broad.mit.edu	37	4	154625550	154625550	+	Silent	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
GRIA2	2891	broad.mit.edu	37	4	158142864	158142864	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
LDB2	9079	broad.mit.edu	37	4	16900009	16900009	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
TACC3	10460	broad.mit.edu	37	4	1733001	1733001	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
LETM1	3954	broad.mit.edu	37	4	1843344	1843344	+	Nonsense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDLIM3	27295	broad.mit.edu	37	4	186425667	186425667	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
SOD3	6649	broad.mit.edu	37	4	24801248	24801248	+	Silent	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
APBB2	323	broad.mit.edu	37	4	40895355	40895355	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	55139810	55139810	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
AASDH	132949	broad.mit.edu	37	4	57250456	57250456	+	Nonsense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDE6B	5158	broad.mit.edu	37	4	656971	656971	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
ALB	213	broad.mit.edu	37	4	74285275	74285275	+	Silent	SNP	G	A	A	rs11538206		TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
G3BP2	9908	broad.mit.edu	37	4	76570708	76570708	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPEF2	5470	broad.mit.edu	37	4	76781888	76781888	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTPN13	5783	broad.mit.edu	37	4	87735669	87735669	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPM1K	152926	broad.mit.edu	37	4	89199513	89199513	+	Missense_Mutation	SNP	T	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHA7	56141	broad.mit.edu	37	5	140215250	140215250	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHA13	56136	broad.mit.edu	37	5	140263524	140263524	+	Silent	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC36A3	285641	broad.mit.edu	37	5	150657200	150657200	+	Silent	SNP	G	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADRA1B	147	broad.mit.edu	37	5	159344642	159344642	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF354B	117608	broad.mit.edu	37	5	178310385	178310385	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
CANX	821	broad.mit.edu	37	5	179143204	179143204	+	Missense_Mutation	SNP	C	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33614349	33614349	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45262237	45262237	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
MED10	84246	broad.mit.edu	37	5	6378552	6378552	+	Silent	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR98	84059	broad.mit.edu	37	5	89948215	89948215	+	Missense_Mutation	SNP	T	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
BCLAF1	9774	broad.mit.edu	37	6	136599241	136599241	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
WTAP	9589	broad.mit.edu	37	6	160174506	160174506	+	Missense_Mutation	SNP	A	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF184	7738	broad.mit.edu	37	6	27420988	27420988	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
GTPBP2	54676	broad.mit.edu	37	6	43593965	43593965	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC25A27	9481	broad.mit.edu	37	6	46644165	46644165	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
PAQR8	85315	broad.mit.edu	37	6	52268632	52268632	+	Silent	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC26A3	1811	broad.mit.edu	37	7	107423661	107423661	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
DOCK4	9732	broad.mit.edu	37	7	111508111	111508111	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
TPK1	27010	broad.mit.edu	37	7	144245674	144245674	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPDR1	54749	broad.mit.edu	37	7	37960368	37960368	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZMIZ2	83637	broad.mit.edu	37	7	44796036	44796036	+	Silent	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
TNRC18	84629	broad.mit.edu	37	7	5352441	5352441	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
HIP1	3092	broad.mit.edu	37	7	75203167	75203167	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
SEMA3C	10512	broad.mit.edu	37	7	80374329	80374329	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDK6	1021	broad.mit.edu	37	7	92462586	92462586	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
SAMD9	54809	broad.mit.edu	37	7	92732940	92732940	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
SMURF1	57154	broad.mit.edu	37	7	98634711	98634711	+	Silent	SNP	A	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100833675	100833675	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
UBR5	51366	broad.mit.edu	37	8	103335546	103335546	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133906095	133906095	+	Silent	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
INTS9	55756	broad.mit.edu	37	8	28633422	28633422	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
CORO2A	7464	broad.mit.edu	37	9	100888882	100888882	+	Silent	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113213596	113213596	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
C9orf91	203197	broad.mit.edu	37	9	117389258	117389258	+	Nonsense_Mutation	SNP	C	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
NUP188	23511	broad.mit.edu	37	9	131721315	131721315	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
FNBP1	23048	broad.mit.edu	37	9	132658259	132658259	+	Silent	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
DDX31	64794	broad.mit.edu	37	9	135545428	135545428	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
RXRA	6256	broad.mit.edu	37	9	137300844	137300844	+	Silent	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
NOTCH1	4851	broad.mit.edu	37	9	139391498	139391498	+	Silent	SNP	G	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
ENTPD2	954	broad.mit.edu	37	9	139945421	139945421	+	Missense_Mutation	SNP	T	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
VLDLR	7436	broad.mit.edu	37	9	2652927	2652927	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
C9orf102	375748	broad.mit.edu	37	9	98690414	98690414	+	Silent	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
DRP2	1821	broad.mit.edu	37	X	100513302	100513302	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
HTR2C	3358	broad.mit.edu	37	X	114141690	114141690	+	Silent	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
GLUD2	2747	broad.mit.edu	37	X	120183007	120183007	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
UTP14A	10813	broad.mit.edu	37	X	129059059	129059059	+	Missense_Mutation	SNP	C	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAGEC1	9947	broad.mit.edu	37	X	140995585	140995585	+	Nonsense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPANXN1	494118	broad.mit.edu	37	X	144337274	144337274	+	Silent	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
UBL4A	8266	broad.mit.edu	37	X	153713943	153713943	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	31645811	31645811	+	Missense_Mutation	SNP	T	G	G			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
EFHC2	80258	broad.mit.edu	37	X	44108098	44108098	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
KDM6A	7403	broad.mit.edu	37	X	44938512	44938512	+	Silent	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
HUWE1	10075	broad.mit.edu	37	X	53603879	53603879	+	Silent	SNP	T	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM120C	54954	broad.mit.edu	37	X	54143003	54143003	+	Missense_Mutation	SNP	G	C	C			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
STARD8	9754	broad.mit.edu	37	X	67940785	67940785	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
MED12	9968	broad.mit.edu	37	X	70345221	70345221	+	Missense_Mutation	SNP	G	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
TAF1	6872	broad.mit.edu	37	X	70608124	70608124	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR174	84636	broad.mit.edu	37	X	78427144	78427144	+	Missense_Mutation	SNP	G	A	A			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
KAL1	3730	broad.mit.edu	37	X	8507728	8507728	+	Missense_Mutation	SNP	C	T	T			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
CRYBA2	1412	broad.mit.edu	37	2	219857870	219857884	+	In_Frame_Del	DEL	GCCGGGCCCGGCGCG	-	-			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
AGFG2	3268	broad.mit.edu	37	7	100148019	100148022	+	Frame_Shift_Del	DEL	GTTT	-	-			TCGA-C4-A0F6-01	TCGA-C4-A0F6-01									Somatic	Phase_I	Capture				Illumina GAIIx
