Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
C10orf78	119392	broad.mit.edu	37	10	105882813	105882813	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115355468	115355468	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
UPF2	26019	broad.mit.edu	37	10	12071355	12071355	+	Silent	SNP	T	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM45A	404636	broad.mit.edu	37	10	120879939	120879939	+	Missense_Mutation	SNP	A	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
BAG3	9531	broad.mit.edu	37	10	121431904	121431904	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
MKI67	4288	broad.mit.edu	37	10	129905874	129905874	+	Silent	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
MRC1	4360	broad.mit.edu	37	10	18112246	18112246	+	Silent	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF438	220929	broad.mit.edu	37	10	31138355	31138355	+	Missense_Mutation	SNP	C	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ALOX5	240	broad.mit.edu	37	10	45907638	45907638	+	Splice_Site	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50857602	50857602	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
AKR1C4	1109	broad.mit.edu	37	10	5248277	5248277	+	Missense_Mutation	SNP	A	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55600095	55600095	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	68040318	68040318	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
AIFM2	84883	broad.mit.edu	37	10	71880898	71880898	+	Missense_Mutation	SNP	C	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC109A	90550	broad.mit.edu	37	10	74619017	74619017	+	Silent	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYST4	23522	broad.mit.edu	37	10	76744917	76744917	+	Missense_Mutation	SNP	A	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANXA11	311	broad.mit.edu	37	10	81929059	81929059	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
MMP27	64066	broad.mit.edu	37	11	102564639	102564639	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
DYNC2H1	79659	broad.mit.edu	37	11	103086469	103086469	+	Missense_Mutation	SNP	A	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CARD16	114769	broad.mit.edu	37	11	104915124	104915124	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
MLL	4297	broad.mit.edu	37	11	118374132	118374132	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
MICAL2	9645	broad.mit.edu	37	11	12248645	12248645	+	Silent	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR4D5	219875	broad.mit.edu	37	11	123810416	123810416	+	Missense_Mutation	SNP	C	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR10G8	219869	broad.mit.edu	37	11	123900608	123900608	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNJ5	3762	broad.mit.edu	37	11	128781390	128781390	+	Silent	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
COPB1	1315	broad.mit.edu	37	11	14502617	14502617	+	Silent	SNP	T	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
GTF2H1	2965	broad.mit.edu	37	11	18361114	18361114	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC34	91057	broad.mit.edu	37	11	27384539	27384539	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
METT5D1	196074	broad.mit.edu	37	11	28232683	28232683	+	Silent	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
EIF3M	10480	broad.mit.edu	37	11	32622318	32622318	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAG1	5896	broad.mit.edu	37	11	36596535	36596535	+	Missense_Mutation	SNP	C	A	A	rs104894285		TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR51B6	390058	broad.mit.edu	37	11	5372785	5372785	+	Silent	SNP	A	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRPF19	27339	broad.mit.edu	37	11	60671325	60671325	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYT7	9066	broad.mit.edu	37	11	61291406	61291406	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CD248	57124	broad.mit.edu	37	11	66082774	66082774	+	Silent	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
B3GNT1	11041	broad.mit.edu	37	11	66113603	66113603	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SHANK2	22941	broad.mit.edu	37	11	70319029	70319029	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYTL2	54843	broad.mit.edu	37	11	85447612	85447612	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
C11orf73	51501	broad.mit.edu	37	11	86048472	86048472	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92533128	92533128	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
C12orf48	55010	broad.mit.edu	37	12	102572447	102572447	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CKAP4	10970	broad.mit.edu	37	12	106632982	106632982	+	Silent	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SSH1	54434	broad.mit.edu	37	12	109182345	109182345	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
KSR2	283455	broad.mit.edu	37	12	117923470	117923470	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR133	283383	broad.mit.edu	37	12	131484985	131484985	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR133	283383	broad.mit.edu	37	12	131488789	131488789	+	Silent	SNP	G	A	A	rs73473278	by1000genomes	TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCC9	10060	broad.mit.edu	37	12	22015985	22015985	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
FOXM1	2305	broad.mit.edu	37	12	2968590	2968590	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43826585	43826585	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
BAZ2A	11176	broad.mit.edu	37	12	56995427	56995427	+	Nonsense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHD4	1108	broad.mit.edu	37	12	6680126	6680126	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHD4	1108	broad.mit.edu	37	12	6686986	6686986	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
FGD6	55785	broad.mit.edu	37	12	95604045	95604045	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101944589	101944589	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
C13orf27	93081	broad.mit.edu	37	13	103419691	103419691	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
TPTE2	93492	broad.mit.edu	37	13	20048070	20048070	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC7A1	6541	broad.mit.edu	37	13	30106971	30106971	+	Silent	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
C13orf26	122046	broad.mit.edu	37	13	31543165	31543165	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
BRCA2	675	broad.mit.edu	37	13	32914961	32914961	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM48A	55578	broad.mit.edu	37	13	37593497	37593497	+	Missense_Mutation	SNP	C	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
NAA16	79612	broad.mit.edu	37	13	41910844	41910844	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRKD1	5587	broad.mit.edu	37	14	30105594	30105594	+	Missense_Mutation	SNP	C	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGAP5	394	broad.mit.edu	37	14	32560932	32560932	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
BAZ1A	11177	broad.mit.edu	37	14	35228028	35228028	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
RALGAPA1	253959	broad.mit.edu	37	14	36230213	36230213	+	Splice_Site	SNP	C	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
KLHDC2	23588	broad.mit.edu	37	14	50246473	50246473	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
C14orf138	79609	broad.mit.edu	37	14	50583166	50583166	+	Silent	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
WDHD1	11169	broad.mit.edu	37	14	55448271	55448271	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
WDHD1	11169	broad.mit.edu	37	14	55467688	55467688	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPTB	6710	broad.mit.edu	37	14	65234536	65234536	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
EXD2	55218	broad.mit.edu	37	14	69702817	69702817	+	Silent	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	72985157	72985157	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF410	57862	broad.mit.edu	37	14	74360609	74360609	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
RIN3	79890	broad.mit.edu	37	14	93081784	93081784	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAGEL2	54551	broad.mit.edu	37	15	23889947	23889947	+	Silent	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGAP11A	9824	broad.mit.edu	37	15	32917399	32917399	+	Missense_Mutation	SNP	C	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
FMN1	342184	broad.mit.edu	37	15	33359049	33359049	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
C15orf55	256646	broad.mit.edu	37	15	34649515	34649515	+	Silent	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPRED1	161742	broad.mit.edu	37	15	38591726	38591726	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
RASGRP1	10125	broad.mit.edu	37	15	38808463	38808463	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
NUSAP1	51203	broad.mit.edu	37	15	41625174	41625174	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
LTK	4058	broad.mit.edu	37	15	41805071	41805071	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
MGA	23269	broad.mit.edu	37	15	41961828	41961828	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDAN1	146059	broad.mit.edu	37	15	43025297	43025297	+	Silent	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDAN1	146059	broad.mit.edu	37	15	43025301	43025301	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CASC4	113201	broad.mit.edu	37	15	44695105	44695105	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SCG3	29106	broad.mit.edu	37	15	51988109	51988109	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
C15orf44	81556	broad.mit.edu	37	15	65891286	65891286	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
DENND4A	10260	broad.mit.edu	37	15	65983838	65983838	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
BBS4	585	broad.mit.edu	37	15	73009130	73009130	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CLK3	1198	broad.mit.edu	37	15	74912488	74912488	+	Silent	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
POLG	5428	broad.mit.edu	37	15	89873444	89873444	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTC23	64927	broad.mit.edu	37	15	99759146	99759146	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
BAIAP3	8938	broad.mit.edu	37	16	1391337	1391337	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PALB2	79728	broad.mit.edu	37	16	23640969	23640969	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
AMDHD2	51005	broad.mit.edu	37	16	2570828	2570828	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SH2B1	25970	broad.mit.edu	37	16	28878108	28878108	+	Silent	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF200	7752	broad.mit.edu	37	16	3273997	3273997	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADCY9	115	broad.mit.edu	37	16	4016190	4016190	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCC11	85320	broad.mit.edu	37	16	48264436	48264436	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF423	23090	broad.mit.edu	37	16	49671947	49671947	+	Silent	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
HEATR3	55027	broad.mit.edu	37	16	50100305	50100305	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
NLRC5	84166	broad.mit.edu	37	16	57065331	57065331	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
EDC4	23644	broad.mit.edu	37	16	67909846	67909846	+	Splice_Site	SNP	A	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
VAT1L	57687	broad.mit.edu	37	16	77859262	77859262	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PKD1L2	114780	broad.mit.edu	37	16	81249935	81249935	+	Silent	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDH15	1013	broad.mit.edu	37	16	89254631	89254631	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10432249	10432249	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYH3	4621	broad.mit.edu	37	17	10535904	10535904	+	Silent	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRPF8	10594	broad.mit.edu	37	17	1582371	1582371	+	Silent	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAI1	10743	broad.mit.edu	37	17	17699982	17699982	+	Silent	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAI1	10743	broad.mit.edu	37	17	17700179	17700179	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAI1	10743	broad.mit.edu	37	17	17700285	17700285	+	Silent	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAI1	10743	broad.mit.edu	37	17	17700911	17700911	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAI1	10743	broad.mit.edu	37	17	17700914	17700914	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAI1	10743	broad.mit.edu	37	17	17701368	17701368	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC13A2	9058	broad.mit.edu	37	17	26820718	26820718	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SUPT6H	6830	broad.mit.edu	37	17	27000447	27000447	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYO18A	399687	broad.mit.edu	37	17	27421806	27421806	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
C17orf42	79736	broad.mit.edu	37	17	29227537	29227537	+	Missense_Mutation	SNP	A	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
NF1	4763	broad.mit.edu	37	17	29576080	29576080	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF830	91603	broad.mit.edu	37	17	33289675	33289675	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACACA	31	broad.mit.edu	37	17	35512649	35512649	+	Silent	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
TBC1D3	729873	broad.mit.edu	37	17	36288266	36288266	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
TBC1D3	729873	broad.mit.edu	37	17	36288269	36288269	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
LASP1	3927	broad.mit.edu	37	17	37046755	37046755	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
KRT24	192666	broad.mit.edu	37	17	38857538	38857538	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
KLHL11	55175	broad.mit.edu	37	17	40011443	40011443	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
KAT2A	2648	broad.mit.edu	37	17	40271680	40271680	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CALCOCO2	10241	broad.mit.edu	37	17	46926617	46926617	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC35B1	10237	broad.mit.edu	37	17	47780327	47780327	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
MRPL27	51264	broad.mit.edu	37	17	48445522	48445522	+	Silent	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
UTP18	51096	broad.mit.edu	37	17	49374347	49374347	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
MPO	4353	broad.mit.edu	37	17	56349051	56349051	+	Silent	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
MPO	4353	broad.mit.edu	37	17	56350157	56350157	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
C17orf47	284083	broad.mit.edu	37	17	56620137	56620137	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
USP32	84669	broad.mit.edu	37	17	58286164	58286164	+	Missense_Mutation	SNP	T	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBF1	85302	broad.mit.edu	37	17	73922925	73922925	+	Missense_Mutation	SNP	T	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRPSAP1	5635	broad.mit.edu	37	17	74307742	74307742	+	Silent	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
RNF213	57674	broad.mit.edu	37	17	78343329	78343329	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
RNF213	57674	broad.mit.edu	37	17	78343399	78343399	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
NARF	26502	broad.mit.edu	37	17	80439027	80439027	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CEP76	79959	broad.mit.edu	37	18	12702511	12702511	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ELP2	55250	broad.mit.edu	37	18	33738801	33738801	+	Missense_Mutation	SNP	G	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA1632	57724	broad.mit.edu	37	18	43495477	43495477	+	Missense_Mutation	SNP	T	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
TCEB3B	51224	broad.mit.edu	37	18	44559494	44559494	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
KATNAL2	83473	broad.mit.edu	37	18	44589673	44589673	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50592482	50592482	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	7038844	7038844	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF236	7776	broad.mit.edu	37	18	74587572	74587572	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDE4A	5141	broad.mit.edu	37	19	10568641	10568641	+	Missense_Mutation	SNP	C	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF441	126068	broad.mit.edu	37	19	11891441	11891441	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
NFIX	4784	broad.mit.edu	37	19	13183886	13183886	+	Missense_Mutation	SNP	C	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
IL27RA	9466	broad.mit.edu	37	19	14157122	14157122	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYO9B	4650	broad.mit.edu	37	19	17305659	17305659	+	Silent	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANO8	57719	broad.mit.edu	37	19	17440962	17440962	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF682	91120	broad.mit.edu	37	19	20117297	20117297	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC39A3	29985	broad.mit.edu	37	19	2737188	2737188	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC7A9	11136	broad.mit.edu	37	19	33359415	33359415	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
MATK	4145	broad.mit.edu	37	19	3781668	3781668	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF793	390927	broad.mit.edu	37	19	38028585	38028585	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SAMD4B	55095	broad.mit.edu	37	19	39868169	39868169	+	Silent	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PSG5	5673	broad.mit.edu	37	19	43680125	43680125	+	Silent	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLAUR	5329	broad.mit.edu	37	19	44169603	44169603	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF285	26974	broad.mit.edu	37	19	44896514	44896514	+	Silent	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC9	26093	broad.mit.edu	37	19	47761897	47761897	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
VN1R4	317703	broad.mit.edu	37	19	53770061	53770061	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMC4	147798	broad.mit.edu	37	19	54667458	54667458	+	Silent	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
LILRB1	10859	broad.mit.edu	37	19	55147018	55147018	+	Silent	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
INSR	3643	broad.mit.edu	37	19	7174599	7174599	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
EXTL2	2135	broad.mit.edu	37	1	101339508	101339508	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAGI3	260425	broad.mit.edu	37	1	114184706	114184706	+	Missense_Mutation	SNP	C	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
TNFRSF8	943	broad.mit.edu	37	1	12164562	12164562	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
VWA1	64856	broad.mit.edu	37	1	1374667	1374667	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
MTMR11	10903	broad.mit.edu	37	1	149906110	149906110	+	Silent	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRPF3	9129	broad.mit.edu	37	1	150325402	150325402	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
TCHH	7062	broad.mit.edu	37	1	152085383	152085383	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152275916	152275916	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152285757	152285757	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR6K6	128371	broad.mit.edu	37	1	158724630	158724630	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
MNDA	4332	broad.mit.edu	37	1	158813830	158813830	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBLIM1	54751	broad.mit.edu	37	1	16111108	16111108	+	Silent	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBLIM1	54751	broad.mit.edu	37	1	16111144	16111144	+	Silent	SNP	G	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBXO42	54455	broad.mit.edu	37	1	16641903	16641903	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPATA21	374955	broad.mit.edu	37	1	16727277	16727277	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIFAP3	22920	broad.mit.edu	37	1	169993598	169993598	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
FMO3	2328	broad.mit.edu	37	1	171083188	171083188	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CEP350	9857	broad.mit.edu	37	1	179989859	179989859	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CEP350	9857	broad.mit.edu	37	1	179989968	179989968	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186088322	186088322	+	Splice_Site	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
TPR	7175	broad.mit.edu	37	1	186319407	186319407	+	Silent	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198701513	198701513	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
IL20	50604	broad.mit.edu	37	1	207039849	207039849	+	Silent	SNP	C	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
LAMB3	3914	broad.mit.edu	37	1	209823311	209823311	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
HP1BP3	50809	broad.mit.edu	37	1	21103139	21103139	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNK2	3776	broad.mit.edu	37	1	215256745	215256745	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215963529	215963529	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CELA3A	10136	broad.mit.edu	37	1	22336318	22336318	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CABC1	56997	broad.mit.edu	37	1	227171276	227171276	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
COG2	22796	broad.mit.edu	37	1	230795210	230795210	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
AHCTF1	25909	broad.mit.edu	37	1	247053281	247053281	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARID1A	8289	broad.mit.edu	37	1	27101309	27101309	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARID1A	8289	broad.mit.edu	37	1	27102121	27102121	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPOCD1	90853	broad.mit.edu	37	1	32280503	32280503	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
LCK	3932	broad.mit.edu	37	1	32742252	32742252	+	Missense_Mutation	SNP	C	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
RNF220	55182	broad.mit.edu	37	1	45115332	45115332	+	Splice_Site	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMEM53	79639	broad.mit.edu	37	1	45120468	45120468	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZFYVE9	9372	broad.mit.edu	37	1	52704276	52704276	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZFYVE9	9372	broad.mit.edu	37	1	52704805	52704805	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZFYVE9	9372	broad.mit.edu	37	1	52704876	52704876	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZFYVE9	9372	broad.mit.edu	37	1	52705008	52705008	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZFYVE9	9372	broad.mit.edu	37	1	52705108	52705108	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZCCHC11	23318	broad.mit.edu	37	1	52940613	52940613	+	Missense_Mutation	SNP	G	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZCCHC11	23318	broad.mit.edu	37	1	52940833	52940833	+	Missense_Mutation	SNP	G	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZCCHC11	23318	broad.mit.edu	37	1	52940841	52940841	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
TAS1R1	80835	broad.mit.edu	37	1	6634783	6634783	+	Silent	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
NOC2L	26155	broad.mit.edu	37	1	880485	880485	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
UQCC	55245	broad.mit.edu	37	20	33969816	33969816	+	Missense_Mutation	SNP	T	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
IFT52	51098	broad.mit.edu	37	20	42271258	42271258	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
MMP9	4318	broad.mit.edu	37	20	44640217	44640217	+	Silent	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
DDX27	55661	broad.mit.edu	37	20	47841697	47841697	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
STX16	8675	broad.mit.edu	37	20	57251299	57251299	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL20A1	57642	broad.mit.edu	37	20	61944555	61944555	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CLIC6	54102	broad.mit.edu	37	21	36088774	36088774	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PSMG1	8624	broad.mit.edu	37	21	40547517	40547517	+	Nonstop_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PSMG1	8624	broad.mit.edu	37	21	40547542	40547542	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
DSCAM	1826	broad.mit.edu	37	21	41427661	41427661	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CECR2	27443	broad.mit.edu	37	22	18022144	18022144	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SERPIND1	3053	broad.mit.edu	37	22	21140347	21140347	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
TFIP11	24144	broad.mit.edu	37	22	26894901	26894901	+	Missense_Mutation	SNP	C	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SEC14L2	23541	broad.mit.edu	37	22	30806616	30806616	+	Silent	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CYP2D6	1565	broad.mit.edu	37	22	42523515	42523515	+	Silent	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
C22orf9	23313	broad.mit.edu	37	22	45593787	45593787	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
REV1	51455	broad.mit.edu	37	2	100019387	100019387	+	Silent	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
LPIN1	23175	broad.mit.edu	37	2	11911647	11911647	+	Silent	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAP3K2	10746	broad.mit.edu	37	2	128066317	128066317	+	Nonsense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
R3HDM1	23518	broad.mit.edu	37	2	136433011	136433011	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZEB2	9839	broad.mit.edu	37	2	145157492	145157492	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
TANC1	85461	broad.mit.edu	37	2	160035372	160035372	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
BAZ2B	29994	broad.mit.edu	37	2	160295645	160295645	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
C2orf77	129881	broad.mit.edu	37	2	170502533	170502533	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
KLHL23	151230	broad.mit.edu	37	2	170597983	170597983	+	Missense_Mutation	SNP	C	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179397871	179397871	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179477688	179477688	+	Missense_Mutation	SNP	A	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
GLS	2744	broad.mit.edu	37	2	191818302	191818302	+	Silent	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CASP8	841	broad.mit.edu	37	2	202149756	202149756	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PUM2	23369	broad.mit.edu	37	2	20478508	20478508	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21228021	21228021	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNER	92737	broad.mit.edu	37	2	230312236	230312236	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
RBM44	375316	broad.mit.edu	37	2	238726510	238726510	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ASXL2	55252	broad.mit.edu	37	2	25990452	25990452	+	Nonsense_Mutation	SNP	T	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CENPA	1058	broad.mit.edu	37	2	27016087	27016087	+	Silent	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
C2orf53	339779	broad.mit.edu	37	2	27360613	27360613	+	Silent	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SUPT7L	9913	broad.mit.edu	37	2	27884232	27884232	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
HEATR5B	54497	broad.mit.edu	37	2	37287790	37287790	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
THADA	63892	broad.mit.edu	37	2	43519295	43519295	+	Missense_Mutation	SNP	G	C	C	rs34600960		TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50779755	50779755	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM161A	84140	broad.mit.edu	37	2	62066885	62066885	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ETAA1	54465	broad.mit.edu	37	2	67637048	67637048	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
HTRA2	27429	broad.mit.edu	37	2	74757145	74757145	+	Silent	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108129603	108129603	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
DPPA4	55211	broad.mit.edu	37	3	109050829	109050829	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
HRH1	3269	broad.mit.edu	37	3	11301597	11301597	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
GOLGB1	2804	broad.mit.edu	37	3	121412961	121412961	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
GOLGB1	2804	broad.mit.edu	37	3	121413280	121413280	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
KPNA1	3836	broad.mit.edu	37	3	122186201	122186201	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDIA5	10954	broad.mit.edu	37	3	122811201	122811201	+	Splice_Site	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAB7A	7879	broad.mit.edu	37	3	128516892	128516892	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
IQSEC1	9922	broad.mit.edu	37	3	12977699	12977699	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CNTN6	27255	broad.mit.edu	37	3	1418703	1418703	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLSCR5	389158	broad.mit.edu	37	3	146311797	146311797	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
FGD5	152273	broad.mit.edu	37	3	14861786	14861786	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SAMD7	344658	broad.mit.edu	37	3	169644760	169644760	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPATA16	83893	broad.mit.edu	37	3	172643146	172643146	+	Silent	SNP	C	G	G	rs114391054	by1000genomes	TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
USP13	8975	broad.mit.edu	37	3	179448467	179448467	+	Silent	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PEX5L	51555	broad.mit.edu	37	3	179526147	179526147	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
KLHL6	89857	broad.mit.edu	37	3	183217456	183217456	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PARL	55486	broad.mit.edu	37	3	183585733	183585733	+	Missense_Mutation	SNP	G	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRA2B	6434	broad.mit.edu	37	3	185636158	185636158	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SUSD5	26032	broad.mit.edu	37	3	33194715	33194715	+	Nonsense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRANK1	9881	broad.mit.edu	37	3	36874809	36874809	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRRN1	57633	broad.mit.edu	37	3	3886816	3886816	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SETD2	29072	broad.mit.edu	37	3	47158213	47158213	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48609570	48609570	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48612870	48612870	+	Missense_Mutation	SNP	C	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZMYND10	51364	broad.mit.edu	37	3	50379109	50379109	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
STAB1	23166	broad.mit.edu	37	3	52547984	52547984	+	Missense_Mutation	SNP	G	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDE12	201626	broad.mit.edu	37	3	57543244	57543244	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
FLNB	2317	broad.mit.edu	37	3	57994493	57994493	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PXK	54899	broad.mit.edu	37	3	58377546	58377546	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACOX2	8309	broad.mit.edu	37	3	58508267	58508267	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATXN7	6314	broad.mit.edu	37	3	63938123	63938123	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADAMTS9	56999	broad.mit.edu	37	3	64554056	64554056	+	Silent	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
C3orf64	285203	broad.mit.edu	37	3	69027583	69027583	+	Silent	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
FOXP1	27086	broad.mit.edu	37	3	71050197	71050197	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR5K1	26339	broad.mit.edu	37	3	98188798	98188798	+	Silent	SNP	A	C	C	rs112214721		TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR5K2	402135	broad.mit.edu	37	3	98216586	98216586	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF330	27309	broad.mit.edu	37	4	142147922	142147922	+	Silent	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLRG1	5356	broad.mit.edu	37	4	155458505	155458505	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
FGA	2243	broad.mit.edu	37	4	155507881	155507881	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
HMGB2	3148	broad.mit.edu	37	4	174254744	174254744	+	Silent	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ODZ3	55714	broad.mit.edu	37	4	183675804	183675804	+	Silent	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SNX25	83891	broad.mit.edu	37	4	186278863	186278863	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
WHSC1	7468	broad.mit.edu	37	4	1980413	1980413	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
TLR6	10333	broad.mit.edu	37	4	38831092	38831092	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDS5A	23244	broad.mit.edu	37	4	39905710	39905710	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0232	9778	broad.mit.edu	37	4	6873346	6873346	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPBP	5473	broad.mit.edu	37	4	74853297	74853297	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CNOT6L	246175	broad.mit.edu	37	4	78663304	78663304	+	Missense_Mutation	SNP	T	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
BMP3	651	broad.mit.edu	37	4	81967324	81967324	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
COPS4	51138	broad.mit.edu	37	4	83996452	83996452	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	87139	87139	+	Missense_Mutation	SNP	A	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127609548	127609548	+	Silent	SNP	G	A	A	rs28763922	by1000genomes	TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
FNIP1	96459	broad.mit.edu	37	5	131007915	131007915	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13865914	13865914	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC25A2	83884	broad.mit.edu	37	5	140683215	140683215	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
GRXCR2	643226	broad.mit.edu	37	5	145239353	145239353	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR151	134391	broad.mit.edu	37	5	145894520	145894520	+	Missense_Mutation	SNP	A	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM105A	54491	broad.mit.edu	37	5	14607518	14607518	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
G3BP1	10146	broad.mit.edu	37	5	151169904	151169904	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
NIPBL	25836	broad.mit.edu	37	5	37045560	37045560	+	Nonsense_Mutation	SNP	T	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
WDR70	55100	broad.mit.edu	37	5	37703084	37703084	+	Silent	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
LIFR	3977	broad.mit.edu	37	5	38484884	38484884	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF131	7690	broad.mit.edu	37	5	43161885	43161885	+	Silent	SNP	A	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
FST	10468	broad.mit.edu	37	5	52778823	52778823	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
DHX29	54505	broad.mit.edu	37	5	54579357	54579357	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
DHX29	54505	broad.mit.edu	37	5	54579455	54579455	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
TAF9	6880	broad.mit.edu	37	5	68661350	68661350	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
POLK	51426	broad.mit.edu	37	5	74869692	74869692	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
POC5	134359	broad.mit.edu	37	5	74970317	74970317	+	Silent	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
FOXO3	2309	broad.mit.edu	37	6	108985341	108985341	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
C6orf204	387119	broad.mit.edu	37	6	118791768	118791768	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
FOXQ1	94234	broad.mit.edu	37	6	1313343	1313343	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
VNN2	8875	broad.mit.edu	37	6	133070857	133070857	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
BCLAF1	9774	broad.mit.edu	37	6	136589449	136589449	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
BCLAF1	9774	broad.mit.edu	37	6	136599168	136599168	+	Missense_Mutation	SNP	T	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
VTA1	51534	broad.mit.edu	37	6	142487389	142487389	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
LATS1	9113	broad.mit.edu	37	6	150005065	150005065	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
LATS1	9113	broad.mit.edu	37	6	150005361	150005361	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
NUP153	9972	broad.mit.edu	37	6	17669713	17669713	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ALDH5A1	7915	broad.mit.edu	37	6	24503595	24503595	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
BTN2A1	11120	broad.mit.edu	37	6	26468591	26468591	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR2B6	26212	broad.mit.edu	37	6	27925387	27925387	+	Missense_Mutation	SNP	T	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYNGAP1	8831	broad.mit.edu	37	6	33391253	33391253	+	Splice_Site	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
C6orf142	90523	broad.mit.edu	37	6	54025594	54025594	+	Silent	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70639365	70639365	+	Missense_Mutation	SNP	C	G	G	rs117929854	by1000genomes	TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYO6	4646	broad.mit.edu	37	6	76576333	76576333	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR63	81491	broad.mit.edu	37	6	97247160	97247160	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SRRT	51593	broad.mit.edu	37	7	100482607	100482607	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIM56	81844	broad.mit.edu	37	7	100731650	100731650	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SND1	27044	broad.mit.edu	37	7	127341354	127341354	+	Nonsense_Mutation	SNP	C	G	G	rs34667910		TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
TSGA14	95681	broad.mit.edu	37	7	130067815	130067815	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRPV5	56302	broad.mit.edu	37	7	142605898	142605898	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
TAS2R60	338398	broad.mit.edu	37	7	143141483	143141483	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR6B1	135946	broad.mit.edu	37	7	143701967	143701967	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146536942	146536942	+	Silent	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SSPO	23145	broad.mit.edu	37	7	149522395	149522395	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
GIMAP5	55340	broad.mit.edu	37	7	150439547	150439547	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
GIMAP5	55340	broad.mit.edu	37	7	150439620	150439620	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
AGAP3	116988	broad.mit.edu	37	7	150840866	150840866	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21775305	21775305	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
STK31	56164	broad.mit.edu	37	7	23810677	23810677	+	Silent	SNP	G	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
HOXA1	3198	broad.mit.edu	37	7	27135406	27135406	+	Silent	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPP1R9A	55607	broad.mit.edu	37	7	94915637	94915637	+	Missense_Mutation	SNP	G	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110535087	110535087	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114448989	114448989	+	Missense_Mutation	SNP	A	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
WDR67	93594	broad.mit.edu	37	8	124095030	124095030	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
C8orf76	84933	broad.mit.edu	37	8	124250182	124250182	+	Splice_Site	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	132002718	132002718	+	Missense_Mutation	SNP	C	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRRC6	23639	broad.mit.edu	37	8	133623581	133623581	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
KHDRBS3	10656	broad.mit.edu	37	8	136594141	136594141	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
MGC70857	414919	broad.mit.edu	37	8	145753430	145753430	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ESCO2	157570	broad.mit.edu	37	8	27645505	27645505	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ELP3	55140	broad.mit.edu	37	8	27987081	27987081	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PURG	29942	broad.mit.edu	37	8	30889612	30889612	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
C8orf42	157695	broad.mit.edu	37	8	442608	442608	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
C8orf42	157695	broad.mit.edu	37	8	442629	442629	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
OPRK1	4986	broad.mit.edu	37	8	54147422	54147422	+	Silent	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
HNF4G	3174	broad.mit.edu	37	8	76471126	76471126	+	Missense_Mutation	SNP	A	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SGK223	157285	broad.mit.edu	37	8	8175847	8175847	+	Silent	SNP	C	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
UGCG	7357	broad.mit.edu	37	9	114691868	114691868	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR21	2844	broad.mit.edu	37	9	125797112	125797112	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
MPDZ	8777	broad.mit.edu	37	9	13113048	13113048	+	Missense_Mutation	SNP	A	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
TSC1	7248	broad.mit.edu	37	9	135786887	135786887	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL5A1	1289	broad.mit.edu	37	9	137676852	137676852	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
OBP2A	29991	broad.mit.edu	37	9	138439763	138439763	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PMPCA	23203	broad.mit.edu	37	9	139313052	139313052	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
IL33	90865	broad.mit.edu	37	9	6252898	6252898	+	Missense_Mutation	SNP	C	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
OGN	4969	broad.mit.edu	37	9	95155527	95155527	+	Splice_Site	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PHF2	5253	broad.mit.edu	37	9	96415473	96415473	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF510	22869	broad.mit.edu	37	9	99522220	99522220	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
DOCK11	139818	broad.mit.edu	37	X	117788597	117788597	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ELF4	2000	broad.mit.edu	37	X	129206253	129206253	+	Silent	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGAP36	158763	broad.mit.edu	37	X	130220601	130220601	+	Missense_Mutation	SNP	G	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF75D	7626	broad.mit.edu	37	X	134421722	134421722	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYTL5	94122	broad.mit.edu	37	X	37955435	37955435	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
TFE3	7030	broad.mit.edu	37	X	48895743	48895743	+	Silent	SNP	G	A	A			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CACNA1F	778	broad.mit.edu	37	X	49070628	49070628	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HR-01	TCGA-CF-A1HR-01									Somatic	Phase_I	Capture				Illumina GAIIx
