Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
SEC31B	25956	broad.mit.edu	37	10	102265919	102265919	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM178A	55719	broad.mit.edu	37	10	102676898	102676898	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
GBF1	8729	broad.mit.edu	37	10	104139673	104139673	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
SH3PXD2A	9644	broad.mit.edu	37	10	105495508	105495508	+	Silent	SNP	G	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
USP6NL	9712	broad.mit.edu	37	10	11505382	11505382	+	Silent	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
GRK5	2869	broad.mit.edu	37	10	121156215	121156215	+	Nonsense_Mutation	SNP	T	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
INPP5F	22876	broad.mit.edu	37	10	121541205	121541205	+	Silent	SNP	A	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	16911847	16911847	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
CSTF2T	23283	broad.mit.edu	37	10	53458275	53458275	+	Silent	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYST4	23522	broad.mit.edu	37	10	76781861	76781861	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
CYP26A1	1592	broad.mit.edu	37	10	94836385	94836385	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLCE1	51196	broad.mit.edu	37	10	96022410	96022410	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
TCTN3	26123	broad.mit.edu	37	10	97446269	97446269	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
CC2D2B	387707	broad.mit.edu	37	10	97775978	97775978	+	Silent	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
BCL9L	283149	broad.mit.edu	37	11	118771774	118771774	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
LDHAL6A	160287	broad.mit.edu	37	11	18487256	18487256	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYBPC3	4607	broad.mit.edu	37	11	47364473	47364473	+	Silent	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR5AK2	390181	broad.mit.edu	37	11	56756546	56756546	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
TNKS1BP1	85456	broad.mit.edu	37	11	57080263	57080263	+	Silent	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR9Q1	219956	broad.mit.edu	37	11	57946980	57946980	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR9Q2	219957	broad.mit.edu	37	11	57958572	57958572	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
NRXN2	9379	broad.mit.edu	37	11	64427940	64427940	+	Silent	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
RASGRP2	10235	broad.mit.edu	37	11	64502637	64502637	+	Silent	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
KDM2A	22992	broad.mit.edu	37	11	67017821	67017821	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR10A5	144124	broad.mit.edu	37	11	6867721	6867721	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPS8L2	64787	broad.mit.edu	37	11	721618	721618	+	Silent	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
UBE3B	89910	broad.mit.edu	37	12	109921406	109921406	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
TCTN1	79600	broad.mit.edu	37	12	111064234	111064234	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
C12orf51	283450	broad.mit.edu	37	12	112666449	112666449	+	Splice_Site	SNP	A	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
TBX3	6926	broad.mit.edu	37	12	115115443	115115443	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
NCOR2	9612	broad.mit.edu	37	12	124856669	124856669	+	Missense_Mutation	SNP	C	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
EP400	57634	broad.mit.edu	37	12	132475243	132475243	+	Missense_Mutation	SNP	G	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
GSG1	83445	broad.mit.edu	37	12	13256440	13256440	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATF7IP	55729	broad.mit.edu	37	12	14613579	14613579	+	Missense_Mutation	SNP	G	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
GUCY2C	2984	broad.mit.edu	37	12	14827597	14827597	+	Missense_Mutation	SNP	G	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPS8	2059	broad.mit.edu	37	12	15803941	15803941	+	Splice_Site	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLCO1B3	28234	broad.mit.edu	37	12	21028199	21028199	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ITPR2	3709	broad.mit.edu	37	12	26839539	26839539	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
BICD1	636	broad.mit.edu	37	12	32480490	32480490	+	Silent	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41337797	41337797	+	Missense_Mutation	SNP	A	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
KDM5A	5927	broad.mit.edu	37	12	420231	420231	+	Splice_Site	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLEKHA9	51054	broad.mit.edu	37	12	45567619	45567619	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
RND1	27289	broad.mit.edu	37	12	49258602	49258602	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC4A8	9498	broad.mit.edu	37	12	51845973	51845973	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
KRT6A	3853	broad.mit.edu	37	12	52882204	52882204	+	Silent	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
CD163	9332	broad.mit.edu	37	12	7639982	7639982	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
A2M	2	broad.mit.edu	37	12	9268390	9268390	+	Missense_Mutation	SNP	A	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZIC2	7546	broad.mit.edu	37	13	100635308	100635308	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
SACS	26278	broad.mit.edu	37	13	23915126	23915126	+	Silent	SNP	A	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
KBTBD6	89890	broad.mit.edu	37	13	41705450	41705450	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
NEK5	341676	broad.mit.edu	37	13	52667254	52667254	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
KLF5	688	broad.mit.edu	37	13	73636553	73636553	+	Silent	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYCBP2	23077	broad.mit.edu	37	13	77825292	77825292	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLITRK6	84189	broad.mit.edu	37	13	86369424	86369424	+	Missense_Mutation	SNP	A	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR180	160897	broad.mit.edu	37	13	95273419	95273419	+	Missense_Mutation	SNP	A	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
BRF1	2972	broad.mit.edu	37	14	105707692	105707692	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR6S1	341799	broad.mit.edu	37	14	21108987	21108987	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
GZMB	3002	broad.mit.edu	37	14	25101100	25101100	+	Silent	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
INSM2	84684	broad.mit.edu	37	14	36003540	36003540	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
GNG2	54331	broad.mit.edu	37	14	52433361	52433361	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR135	64582	broad.mit.edu	37	14	59930507	59930507	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
VASH1	22846	broad.mit.edu	37	14	77242312	77242313	+	Missense_Mutation	DNP	GC	AT	AT			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
SEL1L	6400	broad.mit.edu	37	14	81952666	81952666	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
CYFIP1	23191	broad.mit.edu	37	15	22980128	22980128	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
BAHD1	22893	broad.mit.edu	37	15	40758317	40758317	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPAP1	26015	broad.mit.edu	37	15	41817271	41817271	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
JMJD7-PLA2G4B	8681	broad.mit.edu	37	15	42138489	42138489	+	Missense_Mutation	SNP	G	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
UBR1	197131	broad.mit.edu	37	15	43339472	43339472	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54435219	54435219	+	Silent	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
DIS3L	115752	broad.mit.edu	37	15	66621672	66621672	+	Missense_Mutation	SNP	A	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC33	80125	broad.mit.edu	37	15	74573023	74573023	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
LMAN1L	79748	broad.mit.edu	37	15	75116785	75116785	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMC3	342125	broad.mit.edu	37	15	81628953	81628953	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIF7	374654	broad.mit.edu	37	15	90172769	90172769	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZC3H7A	29066	broad.mit.edu	37	16	11855265	11855265	+	Silent	SNP	A	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
C16orf62	57020	broad.mit.edu	37	16	19693640	19693640	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF319	57567	broad.mit.edu	37	16	58030577	58030577	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
CMTM2	146225	broad.mit.edu	37	16	66621981	66621981	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
NAE1	8883	broad.mit.edu	37	16	66847711	66847711	+	Silent	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
FHOD1	29109	broad.mit.edu	37	16	67264128	67264128	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM65A	79567	broad.mit.edu	37	16	67578917	67578917	+	Missense_Mutation	SNP	G	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
PARD6A	50855	broad.mit.edu	37	16	67695398	67695398	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
PARD6A	50855	broad.mit.edu	37	16	67696109	67696109	+	Silent	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
WDR24	84219	broad.mit.edu	37	16	737292	737292	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACSF3	197322	broad.mit.edu	37	16	89211739	89211739	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10351974	10351974	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
AKAP10	11216	broad.mit.edu	37	17	19861601	19861601	+	Missense_Mutation	SNP	A	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF207	7756	broad.mit.edu	37	17	30678830	30678830	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYO1D	4642	broad.mit.edu	37	17	31092057	31092057	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANKFY1	51479	broad.mit.edu	37	17	4086740	4086740	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
EZH1	2145	broad.mit.edu	37	17	40874816	40874816	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPN3	55040	broad.mit.edu	37	17	48618412	48618412	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF594	84622	broad.mit.edu	37	17	5086349	5086349	+	Silent	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
APPBP2	10513	broad.mit.edu	37	17	58531675	58531675	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
BRIP1	83990	broad.mit.edu	37	17	59763273	59763273	+	Silent	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
BRIP1	83990	broad.mit.edu	37	17	59853848	59853848	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
MED13	9969	broad.mit.edu	37	17	60023934	60023934	+	Silent	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
AXIN2	8313	broad.mit.edu	37	17	63532561	63532561	+	Missense_Mutation	SNP	G	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
RNF157	114804	broad.mit.edu	37	17	74152378	74152378	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577121	7577122	+	Missense_Mutation	DNP	GC	TT	TT			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHD3	1107	broad.mit.edu	37	17	7806657	7806657	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC25A10	1468	broad.mit.edu	37	17	79674028	79674028	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
C17orf62	79415	broad.mit.edu	37	17	80403819	80403819	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
NDC80	10403	broad.mit.edu	37	18	2599084	2599084	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
MALT1	10892	broad.mit.edu	37	18	56402448	56402448	+	Missense_Mutation	SNP	A	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF236	7776	broad.mit.edu	37	18	74593443	74593443	+	Missense_Mutation	SNP	A	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
KRI1	65095	broad.mit.edu	37	19	10671688	10671688	+	Silent	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF878	729747	broad.mit.edu	37	19	12155656	12155656	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP8B3	148229	broad.mit.edu	37	19	1800007	1800007	+	Silent	SNP	C	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDE4C	5143	broad.mit.edu	37	19	18330071	18330071	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39063871	39063871	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
EID2	163126	broad.mit.edu	37	19	40030087	40030087	+	Silent	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
LGALS13	29124	broad.mit.edu	37	19	40095312	40095312	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF780A	284323	broad.mit.edu	37	19	40582009	40582009	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
C19orf47	126526	broad.mit.edu	37	19	40842021	40842021	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
HIPK4	147746	broad.mit.edu	37	19	40886914	40886914	+	Silent	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
SHKBP1	92799	broad.mit.edu	37	19	41094536	41094536	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHAF1A	10036	broad.mit.edu	37	19	4409533	4409533	+	Missense_Mutation	SNP	T	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF233	353355	broad.mit.edu	37	19	44778142	44778142	+	Silent	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
EML2	24139	broad.mit.edu	37	19	46117878	46117878	+	Missense_Mutation	SNP	C	G	G	rs35344004		TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
FEM1A	55527	broad.mit.edu	37	19	4793524	4793524	+	Missense_Mutation	SNP	A	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
HRC	3270	broad.mit.edu	37	19	49657670	49657670	+	Silent	SNP	G	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRPM4	54795	broad.mit.edu	37	19	49692258	49692258	+	Silent	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF616	90317	broad.mit.edu	37	19	52620235	52620235	+	Missense_Mutation	SNP	T	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF816A	125893	broad.mit.edu	37	19	53454831	53454831	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
LILRA5	353514	broad.mit.edu	37	19	54823808	54823808	+	Silent	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
NLRP7	199713	broad.mit.edu	37	19	55451137	55451137	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACTL9	284382	broad.mit.edu	37	19	8808755	8808755	+	Silent	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103544384	103544384	+	Silent	SNP	T	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCND3	3752	broad.mit.edu	37	1	112524482	112524482	+	Silent	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTF2	8458	broad.mit.edu	37	1	117640030	117640030	+	Missense_Mutation	SNP	C	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144922578	144922578	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
SV2A	9900	broad.mit.edu	37	1	149879685	149879685	+	Missense_Mutation	SNP	T	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
C1orf51	148523	broad.mit.edu	37	1	150256881	150256881	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
TARS2	80222	broad.mit.edu	37	1	150477198	150477198	+	Silent	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM63A	55793	broad.mit.edu	37	1	150973046	150973046	+	Missense_Mutation	SNP	G	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
SCNM1	79005	broad.mit.edu	37	1	151139670	151139670	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
SELENBP1	8991	broad.mit.edu	37	1	151338296	151338296	+	Silent	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
POGZ	23126	broad.mit.edu	37	1	151378787	151378787	+	Silent	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
CGN	57530	broad.mit.edu	37	1	151506505	151506505	+	Silent	SNP	C	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
RORC	6097	broad.mit.edu	37	1	151801935	151801935	+	Splice_Site	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152281252	152281252	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152287037	152287037	+	Missense_Mutation	SNP	T	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
LCE1F	353137	broad.mit.edu	37	1	152749146	152749146	+	Nonsense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
INTS3	65123	broad.mit.edu	37	1	153724860	153724860	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
PBXIP1	57326	broad.mit.edu	37	1	154924271	154924271	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
DAP3	7818	broad.mit.edu	37	1	155695275	155695275	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
HAPLN2	60484	broad.mit.edu	37	1	156593922	156593922	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
NES	10763	broad.mit.edu	37	1	156642464	156642464	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ALDH9A1	223	broad.mit.edu	37	1	165649774	165649774	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
TBX19	9095	broad.mit.edu	37	1	168278089	168278089	+	Silent	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
SCYL3	57147	broad.mit.edu	37	1	169847899	169847899	+	Missense_Mutation	SNP	T	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
RASAL2	9462	broad.mit.edu	37	1	178420794	178420794	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRG4	10216	broad.mit.edu	37	1	186273374	186273374	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
CFHR3	10878	broad.mit.edu	37	1	196749062	196749062	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
RNPEP	6051	broad.mit.edu	37	1	201972454	201972454	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ELF3	1999	broad.mit.edu	37	1	201981201	201981201	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215812566	215812566	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
DISP1	84976	broad.mit.edu	37	1	223177617	223177617	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
TLR5	7100	broad.mit.edu	37	1	223285979	223285979	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC35F3	148641	broad.mit.edu	37	1	234367379	234367379	+	Missense_Mutation	SNP	T	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
CNST	163882	broad.mit.edu	37	1	246754982	246754982	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
CNST	163882	broad.mit.edu	37	1	246829073	246829073	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR11L1	391189	broad.mit.edu	37	1	248004359	248004359	+	Silent	SNP	C	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMEM54	113452	broad.mit.edu	37	1	33363895	33363895	+	Silent	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
RLF	6018	broad.mit.edu	37	1	40697236	40697236	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
DEM1	64789	broad.mit.edu	37	1	40981078	40981078	+	Missense_Mutation	SNP	G	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
TIE1	7075	broad.mit.edu	37	1	43782984	43782984	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC6A9	6536	broad.mit.edu	37	1	44474198	44474198	+	Silent	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
C1orf163	65260	broad.mit.edu	37	1	53153747	53153747	+	Missense_Mutation	SNP	A	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
YIPF1	54432	broad.mit.edu	37	1	54343992	54343992	+	Silent	SNP	G	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPAP2B	8613	broad.mit.edu	37	1	56990007	56990007	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPAP2B	8613	broad.mit.edu	37	1	56990203	56990203	+	Silent	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57480619	57480619	+	Missense_Mutation	SNP	C	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57480687	57480687	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57480743	57480743	+	Missense_Mutation	SNP	C	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57480856	57480856	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57481004	57481004	+	Silent	SNP	C	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70541913	70541913	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ASB17	127247	broad.mit.edu	37	1	76397741	76397741	+	Missense_Mutation	SNP	T	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82432119	82432119	+	Silent	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC2A5	6518	broad.mit.edu	37	1	9101954	9101954	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC18	343099	broad.mit.edu	37	1	93677790	93677790	+	Silent	SNP	A	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
CPXM1	56265	broad.mit.edu	37	20	2777020	2777020	+	Missense_Mutation	SNP	A	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLAGL2	5326	broad.mit.edu	37	20	30784748	30784748	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLCG1	5335	broad.mit.edu	37	20	39802821	39802821	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
RBPJL	11317	broad.mit.edu	37	20	43943062	43943062	+	Missense_Mutation	SNP	A	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC9A8	23315	broad.mit.edu	37	20	48481329	48481329	+	Missense_Mutation	SNP	G	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZBP1	81030	broad.mit.edu	37	20	56186846	56186846	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
NRIP1	8204	broad.mit.edu	37	21	16337647	16337647	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
NRIP1	8204	broad.mit.edu	37	21	16338392	16338392	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
NRIP1	8204	broad.mit.edu	37	21	16340196	16340196	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
NRIP1	8204	broad.mit.edu	37	21	16340220	16340220	+	Silent	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
JAM2	58494	broad.mit.edu	37	21	27062211	27062211	+	Missense_Mutation	SNP	C	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
BACH1	571	broad.mit.edu	37	21	30701862	30701862	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAJC28	54943	broad.mit.edu	37	21	34860591	34860591	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDE9A	5152	broad.mit.edu	37	21	44179187	44179187	+	Missense_Mutation	SNP	A	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
GAB4	128954	broad.mit.edu	37	22	17449260	17449260	+	Silent	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP6V1E1	529	broad.mit.edu	37	22	18075495	18075495	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
SEC14L3	266629	broad.mit.edu	37	22	30866040	30866040	+	Missense_Mutation	SNP	T	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
APOL1	8542	broad.mit.edu	37	22	36661303	36661303	+	Silent	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
CACNA1I	8911	broad.mit.edu	37	22	40066081	40066081	+	Silent	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
SAPS2	9701	broad.mit.edu	37	22	50869673	50869673	+	Silent	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC9A2	6549	broad.mit.edu	37	2	103318920	103318920	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHCHD5	84269	broad.mit.edu	37	2	113343831	113343831	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
LPIN1	23175	broad.mit.edu	37	2	11944642	11944642	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
LIMS2	55679	broad.mit.edu	37	2	128412051	128412051	+	Silent	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141128375	141128375	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
TPO	7173	broad.mit.edu	37	2	1480894	1480894	+	Missense_Mutation	SNP	T	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
LY75	4065	broad.mit.edu	37	2	160738705	160738705	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
GAD1	2571	broad.mit.edu	37	2	171709254	171709254	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
SP3	6670	broad.mit.edu	37	2	174819648	174819648	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR155	151556	broad.mit.edu	37	2	175311382	175311382	+	Missense_Mutation	SNP	C	T	T	rs111563303		TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179474576	179474576	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179629030	179629030	+	Splice_Site	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ORMDL1	94101	broad.mit.edu	37	2	190636562	190636562	+	Silent	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
SGOL2	151246	broad.mit.edu	37	2	201436243	201436243	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
BMPR2	659	broad.mit.edu	37	2	203420419	203420419	+	Silent	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ICA1L	130026	broad.mit.edu	37	2	203650667	203650667	+	Nonsense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211481249	211481249	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ERBB4	2066	broad.mit.edu	37	2	212530179	212530179	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
WDR69	164781	broad.mit.edu	37	2	228754637	228754637	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
DIS3L2	129563	broad.mit.edu	37	2	233075107	233075107	+	Missense_Mutation	SNP	T	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
UGT1A4	54657	broad.mit.edu	37	2	234628116	234628116	+	Missense_Mutation	SNP	C	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR35	2859	broad.mit.edu	37	2	241569480	241569480	+	Silent	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
NCOA1	8648	broad.mit.edu	37	2	24929441	24929441	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNK3	3777	broad.mit.edu	37	2	26950989	26950989	+	Silent	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
C2orf63	130162	broad.mit.edu	37	2	55407837	55407837	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ALMS1	7840	broad.mit.edu	37	2	73677492	73677492	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC142	84865	broad.mit.edu	37	2	74709901	74709901	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
C2orf89	129293	broad.mit.edu	37	2	85097589	85097589	+	Silent	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
C2orf89	129293	broad.mit.edu	37	2	85097649	85097649	+	Silent	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
MRPL35	51318	broad.mit.edu	37	2	86437695	86437695	+	Silent	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
CEP97	79598	broad.mit.edu	37	3	101481386	101481386	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
CD200	4345	broad.mit.edu	37	3	112054854	112054854	+	Missense_Mutation	SNP	A	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
VGLL4	9686	broad.mit.edu	37	3	11643348	11643348	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
C3orf1	51300	broad.mit.edu	37	3	119217621	119217621	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
GOLGB1	2804	broad.mit.edu	37	3	121410632	121410632	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYLK	4638	broad.mit.edu	37	3	123452592	123452592	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124413264	124413264	+	Silent	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZBTB38	253461	broad.mit.edu	37	3	141162247	141162247	+	Silent	SNP	T	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
XPC	7508	broad.mit.edu	37	3	14212042	14212042	+	Missense_Mutation	SNP	G	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
GMPS	8833	broad.mit.edu	37	3	155632331	155632331	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNAB1	7881	broad.mit.edu	37	3	156232888	156232888	+	Splice_Site	SNP	G	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
SKIL	6498	broad.mit.edu	37	3	170078501	170078501	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
MCF2L2	23101	broad.mit.edu	37	3	183013209	183013209	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAGEF1	64110	broad.mit.edu	37	3	184429334	184429334	+	Silent	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP13A5	344905	broad.mit.edu	37	3	193029620	193029620	+	Silent	SNP	G	A	A	rs112958471		TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP13A3	79572	broad.mit.edu	37	3	194176633	194176633	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
C3orf35	339883	broad.mit.edu	37	3	37458815	37458815	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
NKTR	4820	broad.mit.edu	37	3	42679619	42679619	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIF15	56992	broad.mit.edu	37	3	44846547	44846547	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
STAB1	23166	broad.mit.edu	37	3	52556921	52556921	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTPRG	5793	broad.mit.edu	37	3	62267314	62267314	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADAMTS9	56999	broad.mit.edu	37	3	64644236	64644236	+	Missense_Mutation	SNP	C	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARL6IP5	10550	broad.mit.edu	37	3	69153637	69153637	+	Silent	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
CRELD1	78987	broad.mit.edu	37	3	9979321	9979321	+	Silent	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYNPO2	171024	broad.mit.edu	37	4	119979019	119979019	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF827	152485	broad.mit.edu	37	4	146686170	146686170	+	Missense_Mutation	SNP	T	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
NPY2R	4887	broad.mit.edu	37	4	156136153	156136153	+	Silent	SNP	C	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
NEIL3	55247	broad.mit.edu	37	4	178281777	178281777	+	Silent	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
WFS1	7466	broad.mit.edu	37	4	6303952	6303952	+	Missense_Mutation	SNP	C	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADAMTS3	9508	broad.mit.edu	37	4	73169735	73169735	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
AFF1	4299	broad.mit.edu	37	4	88012958	88012958	+	Missense_Mutation	SNP	T	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
MCC	4163	broad.mit.edu	37	5	112421001	112421001	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
MRPL22	29093	broad.mit.edu	37	5	154346442	154346442	+	Silent	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
MED7	9443	broad.mit.edu	37	5	156565803	156565803	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
STK10	6793	broad.mit.edu	37	5	171523528	171523528	+	Missense_Mutation	SNP	G	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
HK3	3101	broad.mit.edu	37	5	176323070	176323070	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF354C	30832	broad.mit.edu	37	5	178506306	178506306	+	Silent	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
TBC1D9B	23061	broad.mit.edu	37	5	179292339	179292339	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31317512	31317512	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35753786	35753786	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
CAPSL	133690	broad.mit.edu	37	5	35910144	35910144	+	Missense_Mutation	SNP	T	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
PAIP1	10605	broad.mit.edu	37	5	43547975	43547975	+	Nonsense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
EXOC3	11336	broad.mit.edu	37	5	462321	462321	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC9A3	6550	broad.mit.edu	37	5	476396	476396	+	Missense_Mutation	SNP	G	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
BDP1	55814	broad.mit.edu	37	5	70786810	70786810	+	Splice_Site	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCSK1	5122	broad.mit.edu	37	5	95743998	95743998	+	Silent	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
L3MBTL3	84456	broad.mit.edu	37	6	130413972	130413972	+	Nonsense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMEM200A	114801	broad.mit.edu	37	6	130762701	130762701	+	Silent	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
NUP43	348995	broad.mit.edu	37	6	150067104	150067104	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152563519	152563519	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152771879	152771879	+	Silent	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIF13A	63971	broad.mit.edu	37	6	17987315	17987315	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZSCAN16	80345	broad.mit.edu	37	6	28093491	28093491	+	Silent	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
TNXB	7148	broad.mit.edu	37	6	32014187	32014187	+	Silent	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPT2	9374	broad.mit.edu	37	6	32130348	32130348	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
TAP2	6891	broad.mit.edu	37	6	32800587	32800587	+	Missense_Mutation	SNP	C	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
RGL2	5863	broad.mit.edu	37	6	33261395	33261395	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
FKBP5	2289	broad.mit.edu	37	6	35565137	35565137	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
LHFPL5	222662	broad.mit.edu	37	6	35773576	35773576	+	Silent	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDKN1A	1026	broad.mit.edu	37	6	36652284	36652284	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
RSPH9	221421	broad.mit.edu	37	6	43624433	43624433	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
HSP90AB1	3326	broad.mit.edu	37	6	44216498	44216498	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
HCRTR2	3062	broad.mit.edu	37	6	55120033	55120033	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYO6	4646	broad.mit.edu	37	6	76623906	76623906	+	Missense_Mutation	SNP	A	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
CYP2W1	54905	broad.mit.edu	37	7	1024674	1024674	+	Silent	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
FOXP2	93986	broad.mit.edu	37	7	114299626	114299626	+	Splice_Site	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
LMOD2	442721	broad.mit.edu	37	7	123302335	123302335	+	Missense_Mutation	SNP	T	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM40B	57464	broad.mit.edu	37	7	129110495	129110495	+	Nonsense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
AKR1B15	441282	broad.mit.edu	37	7	134261766	134261766	+	Missense_Mutation	SNP	A	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
TAS2R60	338398	broad.mit.edu	37	7	143141091	143141091	+	Silent	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18975441	18975441	+	Missense_Mutation	SNP	A	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHST12	55501	broad.mit.edu	37	7	2472655	2472655	+	Silent	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
GARS	2617	broad.mit.edu	37	7	30673444	30673444	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	31793151	31793151	+	Silent	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
BBS9	27241	broad.mit.edu	37	7	33384191	33384191	+	Splice_Site	SNP	A	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
INHBA	3624	broad.mit.edu	37	7	41739709	41739709	+	Silent	SNP	T	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
URGCP	55665	broad.mit.edu	37	7	43917868	43917868	+	Silent	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
DAGLB	221955	broad.mit.edu	37	7	6461401	6461401	+	Missense_Mutation	SNP	A	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCB4	5244	broad.mit.edu	37	7	87032471	87032471	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
SAMD9	54809	broad.mit.edu	37	7	92732369	92732369	+	Silent	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRRAP	8295	broad.mit.edu	37	7	98547739	98547739	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRRAP	8295	broad.mit.edu	37	7	98588176	98588176	+	Missense_Mutation	SNP	G	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP6V1C1	528	broad.mit.edu	37	8	104054610	104054610	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
C8orf74	203076	broad.mit.edu	37	8	10555323	10555323	+	Silent	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110412320	110412320	+	Missense_Mutation	SNP	A	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113358347	113358347	+	Missense_Mutation	SNP	T	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRPS1	7227	broad.mit.edu	37	8	116599614	116599614	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
HSF1	3297	broad.mit.edu	37	8	145535686	145535686	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIFC2	90990	broad.mit.edu	37	8	145693255	145693255	+	Nonsense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF16	7564	broad.mit.edu	37	8	146157055	146157055	+	Missense_Mutation	SNP	C	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
CLN8	2055	broad.mit.edu	37	8	1728460	1728460	+	Silent	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
UNC5D	137970	broad.mit.edu	37	8	35541109	35541109	+	Silent	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADAM2	2515	broad.mit.edu	37	8	39604118	39604118	+	Nonsense_Mutation	SNP	T	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHRNB3	1142	broad.mit.edu	37	8	42585836	42585836	+	Missense_Mutation	SNP	C	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
EFCAB1	79645	broad.mit.edu	37	8	49642408	49642408	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
RP1	6101	broad.mit.edu	37	8	55534676	55534676	+	Splice_Site	SNP	G	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
TGS1	96764	broad.mit.edu	37	8	56698335	56698335	+	Missense_Mutation	SNP	A	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
TGS1	96764	broad.mit.edu	37	8	56715061	56715061	+	Missense_Mutation	SNP	A	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
MCPH1	79648	broad.mit.edu	37	8	6312749	6312749	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
OSR2	116039	broad.mit.edu	37	8	99961627	99961627	+	Silent	SNP	C	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPB41L4B	54566	broad.mit.edu	37	9	112018480	112018480	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTPN3	5774	broad.mit.edu	37	9	112185044	112185044	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113198707	113198707	+	Missense_Mutation	SNP	A	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
DFNB31	25861	broad.mit.edu	37	9	117240927	117240927	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
PAPPA	5069	broad.mit.edu	37	9	118949701	118949701	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
C5	727	broad.mit.edu	37	9	123716141	123716141	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
CIZ1	25792	broad.mit.edu	37	9	130940682	130940682	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
LAMC3	10319	broad.mit.edu	37	9	133927972	133927972	+	Silent	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
POMT1	10585	broad.mit.edu	37	9	134393898	134393898	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
SETX	23064	broad.mit.edu	37	9	135204838	135204838	+	Missense_Mutation	SNP	T	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
C9orf98	158067	broad.mit.edu	37	9	135601228	135601228	+	Silent	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
C9orf98	158067	broad.mit.edu	37	9	135702366	135702366	+	Nonsense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM166A	401565	broad.mit.edu	37	9	140139656	140139656	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM166A	401565	broad.mit.edu	37	9	140139944	140139944	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140907677	140907677	+	Missense_Mutation	SNP	T	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
MLLT3	4300	broad.mit.edu	37	9	20620762	20620762	+	Silent	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZCCHC7	84186	broad.mit.edu	37	9	37126516	37126516	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANKRD20A3	441425	broad.mit.edu	37	9	42368547	42368547	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
VPS13A	23230	broad.mit.edu	37	9	79890500	79890500	+	Silent	SNP	A	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
CEP78	84131	broad.mit.edu	37	9	80881397	80881397	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
FLJ46321	389763	broad.mit.edu	37	9	84608089	84608089	+	Missense_Mutation	SNP	A	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTCH1	5727	broad.mit.edu	37	9	98239043	98239043	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
PAK3	5063	broad.mit.edu	37	X	110435399	110435399	+	Missense_Mutation	SNP	A	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
MCTS1	28985	broad.mit.edu	37	X	119742109	119742109	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRPS2	5634	broad.mit.edu	37	X	12827371	12827371	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
TLR8	51311	broad.mit.edu	37	X	12939592	12939592	+	Silent	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM127B	26071	broad.mit.edu	37	X	134185976	134185976	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135429691	135429691	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR101	83550	broad.mit.edu	37	X	136112838	136112838	+	Missense_Mutation	SNP	C	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
F9	2158	broad.mit.edu	37	X	138612920	138612920	+	De_novo_Start_OutOfFrame	SNP	G	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAGEA6	4105	broad.mit.edu	37	X	151870004	151870004	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
L1CAM	3897	broad.mit.edu	37	X	153128148	153128148	+	Silent	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
MTCP1NB	100272147	broad.mit.edu	37	X	154292253	154292253	+	Missense_Mutation	SNP	T	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
VBP1	7411	broad.mit.edu	37	X	154467086	154467086	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
BMX	660	broad.mit.edu	37	X	15534291	15534291	+	Missense_Mutation	SNP	G	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTCHD1	139411	broad.mit.edu	37	X	23398366	23398366	+	Missense_Mutation	SNP	T	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM48B1	100130302	broad.mit.edu	37	X	24383471	24383471	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
TSPAN7	7102	broad.mit.edu	37	X	38534989	38534989	+	Missense_Mutation	SNP	A	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
CXorf38	159013	broad.mit.edu	37	X	40496396	40496396	+	Missense_Mutation	SNP	G	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
HDAC6	10013	broad.mit.edu	37	X	48666514	48666514	+	Missense_Mutation	SNP	G	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
PAGE1	8712	broad.mit.edu	37	X	49454135	49454135	+	Missense_Mutation	SNP	C	T	T			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRO	7216	broad.mit.edu	37	X	54949137	54949137	+	Missense_Mutation	SNP	A	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
TAF1	6872	broad.mit.edu	37	X	70601652	70601652	+	Missense_Mutation	SNP	G	C	C			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
VCX3B	425054	broad.mit.edu	37	X	8434321	8434321	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
VCX3B	425054	broad.mit.edu	37	X	8434381	8434381	+	Missense_Mutation	SNP	C	G	G			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
TIGD3	220359	broad.mit.edu	37	11	65124558	65124558	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
GHDC	84514	broad.mit.edu	37	17	40342704	40342704	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRRC59	55379	broad.mit.edu	37	17	48460488	48460490	+	In_Frame_Del	DEL	CCT	-	-			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR2T35	403244	broad.mit.edu	37	1	248801602	248801603	+	Frame_Shift_Ins	INS	-	CA	CA			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
KDM6A	7403	broad.mit.edu	37	X	44941860	44941861	+	Frame_Shift_Ins	INS	-	A	A			TCGA-CF-A1HS-01	TCGA-CF-A1HS-01									Somatic	Phase_I	Capture				Illumina GAIIx
