Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
FANK1	92565	broad.mit.edu	37	10	127697795	127697795	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
PAOX	196743	broad.mit.edu	37	10	135203207	135203207	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15600156	15600156	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15760853	15760853	+	Silent	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
C10orf140	387640	broad.mit.edu	37	10	21804178	21804178	+	Silent	SNP	A	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
CSGALNACT2	55454	broad.mit.edu	37	10	43662480	43662480	+	Silent	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM21C	253725	broad.mit.edu	37	10	46245583	46245583	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
RBM17	84991	broad.mit.edu	37	10	6155497	6155497	+	Missense_Mutation	SNP	C	G	G			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANK3	288	broad.mit.edu	37	10	61829047	61829047	+	Silent	SNP	T	C	C			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL13A1	1305	broad.mit.edu	37	10	71677085	71677085	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	21592405	21592405	+	Silent	SNP	T	C	C			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC73	493860	broad.mit.edu	37	11	32635179	32635179	+	Silent	SNP	A	G	G			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
HIPK3	10114	broad.mit.edu	37	11	33360345	33360345	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIM48	79097	broad.mit.edu	37	11	55036744	55036744	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR5M9	390162	broad.mit.edu	37	11	56230095	56230095	+	Silent	SNP	G	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR9G4	283189	broad.mit.edu	37	11	56510738	56510738	+	Missense_Mutation	SNP	A	G	G			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR4D6	219983	broad.mit.edu	37	11	59224536	59224536	+	Missense_Mutation	SNP	T	C	C			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
SUV420H1	51111	broad.mit.edu	37	11	67942531	67942531	+	Missense_Mutation	SNP	T	C	C			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARAP1	116985	broad.mit.edu	37	11	72412744	72412744	+	Missense_Mutation	SNP	T	C	C			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	99941209	99941209	+	Missense_Mutation	SNP	C	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAD52	5893	broad.mit.edu	37	12	1034684	1034684	+	Missense_Mutation	SNP	C	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
CAMKK2	10645	broad.mit.edu	37	12	121706440	121706440	+	Splice_Site	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
NELL2	4753	broad.mit.edu	37	12	45269642	45269642	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANKRD33	341405	broad.mit.edu	37	12	52282069	52282069	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRP1	4035	broad.mit.edu	37	12	57600372	57600372	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC2A3	6515	broad.mit.edu	37	12	8083900	8083900	+	Silent	SNP	G	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
C12orf12	196477	broad.mit.edu	37	12	91347836	91347836	+	Silent	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
SACS	26278	broad.mit.edu	37	13	23909550	23909550	+	Missense_Mutation	SNP	T	C	C			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP8A2	51761	broad.mit.edu	37	13	26273338	26273338	+	Missense_Mutation	SNP	T	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC7A1	6541	broad.mit.edu	37	13	30110084	30110084	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
HTR2A	3356	broad.mit.edu	37	13	47469988	47469988	+	Silent	SNP	T	C	C			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
RB1	5925	broad.mit.edu	37	13	48947629	48947629	+	Splice_Site	SNP	G	C	C			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
RB1	5925	broad.mit.edu	37	13	49027248	49027248	+	Splice_Site	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
UTP14C	9724	broad.mit.edu	37	13	52604079	52604079	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
TDRD3	81550	broad.mit.edu	37	13	61041463	61041463	+	Missense_Mutation	SNP	G	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDH9	5101	broad.mit.edu	37	13	67799771	67799771	+	Silent	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR4N5	390437	broad.mit.edu	37	14	20612221	20612221	+	Silent	SNP	G	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
SALL2	6297	broad.mit.edu	37	14	21992660	21992660	+	Missense_Mutation	SNP	T	C	C			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
HECTD1	25831	broad.mit.edu	37	14	31637558	31637558	+	Missense_Mutation	SNP	C	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
CLEC14A	161198	broad.mit.edu	37	14	38724033	38724033	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCD4	5826	broad.mit.edu	37	14	74756769	74756769	+	Silent	SNP	T	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
LTBP2	4053	broad.mit.edu	37	14	74988700	74988700	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
LASS3	204219	broad.mit.edu	37	15	101041925	101041925	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
ALDH1A3	220	broad.mit.edu	37	15	101436230	101436230	+	Silent	SNP	C	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28421740	28421741	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMEM62	80021	broad.mit.edu	37	15	43427845	43427845	+	Missense_Mutation	SNP	A	G	G			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHRNA3	1136	broad.mit.edu	37	15	78893669	78893669	+	Missense_Mutation	SNP	G	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
BNC1	646	broad.mit.edu	37	15	83935803	83935803	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM169B	283777	broad.mit.edu	37	15	99023900	99023900	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTC23	64927	broad.mit.edu	37	15	99715294	99715294	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	20966209	20966209	+	Missense_Mutation	SNP	A	G	G			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	21117941	21117941	+	Missense_Mutation	SNP	G	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
IL21R	50615	broad.mit.edu	37	16	27460030	27460030	+	Missense_Mutation	SNP	A	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF629	23361	broad.mit.edu	37	16	30793590	30793590	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF423	23090	broad.mit.edu	37	16	49671865	49671865	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61935121	61935122	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
FOXC2	2303	broad.mit.edu	37	16	86601425	86601425	+	Silent	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
UNC45B	146862	broad.mit.edu	37	17	33479931	33479931	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
UNC45B	146862	broad.mit.edu	37	17	33496943	33496943	+	Missense_Mutation	SNP	T	G	G			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
KRT13	3860	broad.mit.edu	37	17	39659035	39659035	+	Silent	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
STAT5B	6777	broad.mit.edu	37	17	40370182	40370182	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCA8	10351	broad.mit.edu	37	17	66871845	66871845	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNJ2	3759	broad.mit.edu	37	17	68171213	68171213	+	Silent	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
DTNA	1837	broad.mit.edu	37	18	32395882	32395882	+	Missense_Mutation	SNP	A	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPOR	2057	broad.mit.edu	37	19	11489402	11489402	+	Missense_Mutation	SNP	C	G	G			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF490	57474	broad.mit.edu	37	19	12691722	12691722	+	Silent	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
NANOS3	342977	broad.mit.edu	37	19	13988556	13988556	+	Missense_Mutation	SNP	G	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
LINGO3	645191	broad.mit.edu	37	19	2290293	2290293	+	Silent	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMPRSS9	360200	broad.mit.edu	37	19	2413950	2413950	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
LMNB2	84823	broad.mit.edu	37	19	2433947	2433947	+	Silent	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
LMNB2	84823	broad.mit.edu	37	19	2433965	2433965	+	Silent	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
C19orf29	58509	broad.mit.edu	37	19	3623701	3623701	+	Silent	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38931454	38931454	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
POU2F2	5452	broad.mit.edu	37	19	42599831	42599831	+	Missense_Mutation	SNP	C	G	G			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF606	80095	broad.mit.edu	37	19	58491249	58491249	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9067793	9067793	+	Missense_Mutation	SNP	C	G	G			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
S1PR1	1901	broad.mit.edu	37	1	101704696	101704697	+	Missense_Mutation	DNP	CA	AT	AT			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR61	83873	broad.mit.edu	37	1	110085756	110085756	+	Missense_Mutation	SNP	G	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
TNFRSF1B	7133	broad.mit.edu	37	1	12253005	12253005	+	Missense_Mutation	SNP	G	C	C			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158631163	158631163	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR6K2	81448	broad.mit.edu	37	1	158670235	158670236	+	Nonsense_Mutation	DNP	CC	AG	AG			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR6N1	128372	broad.mit.edu	37	1	158736303	158736303	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
RALGPS2	55103	broad.mit.edu	37	1	178858812	178858812	+	Missense_Mutation	SNP	T	C	C			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
MR1	3140	broad.mit.edu	37	1	181018369	181018369	+	Silent	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACTL8	81569	broad.mit.edu	37	1	18152501	18152501	+	Silent	SNP	C	G	G			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181725138	181725138	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
TROVE2	6738	broad.mit.edu	37	1	193038543	193038543	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196658607	196658607	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
MFSD4	148808	broad.mit.edu	37	1	205538365	205538365	+	Silent	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240497415	240497415	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
RIMS3	9783	broad.mit.edu	37	1	41101634	41101634	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
ELAVL4	1996	broad.mit.edu	37	1	50666658	50666658	+	Silent	SNP	T	C	C			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
LHX8	431707	broad.mit.edu	37	1	75622760	75622760	+	Missense_Mutation	SNP	T	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
HFM1	164045	broad.mit.edu	37	1	91739336	91739336	+	Missense_Mutation	SNP	C	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
LPPR4	9890	broad.mit.edu	37	1	99772549	99772549	+	Silent	SNP	C	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
DHX35	60625	broad.mit.edu	37	20	37662873	37662873	+	Missense_Mutation	SNP	G	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
PANK2	80025	broad.mit.edu	37	20	3869842	3869842	+	Missense_Mutation	SNP	C	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
ELMO2	63916	broad.mit.edu	37	20	45022241	45022241	+	Splice_Site	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57768011	57768011	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
C20orf11	54994	broad.mit.edu	37	20	61572869	61572869	+	Silent	SNP	A	G	G			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
USP25	29761	broad.mit.edu	37	21	17203740	17203740	+	Silent	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRAPPC10	7109	broad.mit.edu	37	21	45504129	45504129	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL18A1	80781	broad.mit.edu	37	21	46910215	46910215	+	Silent	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
DDTL	100037417	broad.mit.edu	37	22	24313540	24313540	+	Missense_Mutation	SNP	T	C	C			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
C2orf40	84417	broad.mit.edu	37	2	106694282	106694282	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
CXCR4	7852	broad.mit.edu	37	2	136872564	136872564	+	Missense_Mutation	SNP	A	C	C			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	138414424	138414424	+	Silent	SNP	T	C	C			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141283905	141283905	+	Missense_Mutation	SNP	T	C	C			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYCN	4613	broad.mit.edu	37	2	16085629	16085629	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179472164	179472164	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179583684	179583684	+	Missense_Mutation	SNP	T	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCA12	26154	broad.mit.edu	37	2	215854127	215854127	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
SGPP2	130367	broad.mit.edu	37	2	223423150	223423150	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
GTF3C2	2976	broad.mit.edu	37	2	27551030	27551030	+	Silent	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPS7	6201	broad.mit.edu	37	2	3627748	3627748	+	Silent	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
WDR52	55779	broad.mit.edu	37	3	113145001	113145001	+	Nonsense_Mutation	SNP	G	C	C			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARGFX	503582	broad.mit.edu	37	3	121305213	121305213	+	Missense_Mutation	SNP	T	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBXO40	51725	broad.mit.edu	37	3	121345737	121345737	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
H1FX	8971	broad.mit.edu	37	3	129034521	129034521	+	Missense_Mutation	SNP	C	G	G			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
H1FX	8971	broad.mit.edu	37	3	129034529	129034529	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRR23B	389151	broad.mit.edu	37	3	138738777	138738777	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR171	29909	broad.mit.edu	37	3	150916249	150916249	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
ECT2	1894	broad.mit.edu	37	3	172474861	172474861	+	Missense_Mutation	SNP	C	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCBP2	1238	broad.mit.edu	37	3	42906025	42906025	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
CELSR3	1951	broad.mit.edu	37	3	48688489	48688489	+	Missense_Mutation	SNP	C	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
RASSF1	11186	broad.mit.edu	37	3	50369047	50369047	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
CENPE	1062	broad.mit.edu	37	4	104061057	104061057	+	Silent	SNP	A	G	G			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
NPNT	255743	broad.mit.edu	37	4	106861772	106861772	+	Missense_Mutation	SNP	G	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDH18	54510	broad.mit.edu	37	4	138452261	138452261	+	Missense_Mutation	SNP	C	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
RBM46	166863	broad.mit.edu	37	4	155719125	155719125	+	Missense_Mutation	SNP	T	C	C			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
TDO2	6999	broad.mit.edu	37	4	156838600	156838600	+	Missense_Mutation	SNP	T	C	C			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
DDX60	55601	broad.mit.edu	37	4	169172235	169172235	+	Missense_Mutation	SNP	C	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
LAP3	51056	broad.mit.edu	37	4	17606232	17606232	+	Missense_Mutation	SNP	G	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
ODZ3	55714	broad.mit.edu	37	4	183696288	183696288	+	Silent	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
GBA3	57733	broad.mit.edu	37	4	22749341	22749341	+	Missense_Mutation	SNP	G	C	C			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM193A	8603	broad.mit.edu	37	4	2701490	2701490	+	Missense_Mutation	SNP	G	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
EVC2	132884	broad.mit.edu	37	4	5564598	5564598	+	Missense_Mutation	SNP	T	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
AFM	173	broad.mit.edu	37	4	74357676	74357676	+	Missense_Mutation	SNP	G	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPBP	5473	broad.mit.edu	37	4	74853045	74853045	+	Missense_Mutation	SNP	G	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
WDFY3	23001	broad.mit.edu	37	4	85781566	85781566	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
TIGD2	166815	broad.mit.edu	37	4	90035429	90035429	+	Missense_Mutation	SNP	G	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLCO4C1	353189	broad.mit.edu	37	5	101631645	101631645	+	Silent	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRRTM2	26045	broad.mit.edu	37	5	138209838	138209838	+	Missense_Mutation	SNP	A	C	C			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHB5	26167	broad.mit.edu	37	5	140517344	140517344	+	Missense_Mutation	SNP	G	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHGA10	56106	broad.mit.edu	37	5	140795157	140795157	+	Missense_Mutation	SNP	A	G	G			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABLIM3	22885	broad.mit.edu	37	5	148632376	148632376	+	Missense_Mutation	SNP	G	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARSI	340075	broad.mit.edu	37	5	149676959	149676959	+	Silent	SNP	G	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAT2	2196	broad.mit.edu	37	5	150934193	150934193	+	Silent	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
HK3	3101	broad.mit.edu	37	5	176314051	176314051	+	Silent	SNP	T	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC34A1	6569	broad.mit.edu	37	5	176813554	176813554	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33576735	33576735	+	Silent	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
CARD6	84674	broad.mit.edu	37	5	40843579	40843579	+	Silent	SNP	A	G	G			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBXO4	26272	broad.mit.edu	37	5	41927133	41927133	+	Missense_Mutation	SNP	A	G	G			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
VCAN	1462	broad.mit.edu	37	5	82816650	82816650	+	Missense_Mutation	SNP	A	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
MEF2C	4208	broad.mit.edu	37	5	88047694	88047694	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
MCTP1	79772	broad.mit.edu	37	5	94275893	94275893	+	Silent	SNP	T	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
STXBP5	134957	broad.mit.edu	37	6	147704100	147704100	+	Nonsense_Mutation	SNP	C	G	G			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
C6orf72	116254	broad.mit.edu	37	6	149893469	149893469	+	Missense_Mutation	SNP	T	C	C			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
PACRG	135138	broad.mit.edu	37	6	163235240	163235240	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTBK1	84630	broad.mit.edu	37	6	43226925	43226925	+	Missense_Mutation	SNP	T	C	C			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMEM30A	55754	broad.mit.edu	37	6	75977363	75977363	+	Silent	SNP	T	C	C			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTK	7272	broad.mit.edu	37	6	80723066	80723066	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0776	23376	broad.mit.edu	37	6	96990871	96990871	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
C7orf52	375607	broad.mit.edu	37	7	100817986	100817986	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
TFEC	22797	broad.mit.edu	37	7	115596823	115596823	+	Missense_Mutation	SNP	A	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
SMO	6608	broad.mit.edu	37	7	128850949	128850949	+	Missense_Mutation	SNP	C	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTC26	79989	broad.mit.edu	37	7	138822608	138822608	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRPV5	56302	broad.mit.edu	37	7	142622811	142622811	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
C7orf36	57002	broad.mit.edu	37	7	39612007	39612007	+	Missense_Mutation	SNP	C	G	G			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
GCK	2645	broad.mit.edu	37	7	44190672	44190672	+	Silent	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRHR	7201	broad.mit.edu	37	8	110100523	110100523	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113657416	113657416	+	Missense_Mutation	SNP	T	C	C			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
DOCK5	80005	broad.mit.edu	37	8	25234819	25234819	+	Splice_Site	SNP	A	G	G			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
SCARA3	51435	broad.mit.edu	37	8	27516466	27516466	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADHFE1	137872	broad.mit.edu	37	8	67357551	67357551	+	Missense_Mutation	SNP	T	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRDM14	63978	broad.mit.edu	37	8	70981498	70981498	+	Missense_Mutation	SNP	C	G	G			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
DCAF4L2	138009	broad.mit.edu	37	8	88885212	88885212	+	Missense_Mutation	SNP	C	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMEM67	91147	broad.mit.edu	37	8	94827619	94827619	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
RABEPK	10244	broad.mit.edu	37	9	127996239	127996239	+	Missense_Mutation	SNP	A	G	G			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
C9orf50	375759	broad.mit.edu	37	9	132375441	132375441	+	Missense_Mutation	SNP	T	C	C			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
LAMC3	10319	broad.mit.edu	37	9	133911631	133911631	+	Silent	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
FCN2	2220	broad.mit.edu	37	9	137777143	137777143	+	Silent	SNP	C	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
NOTCH1	4851	broad.mit.edu	37	9	139396836	139396836	+	Missense_Mutation	SNP	G	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA2026	158358	broad.mit.edu	37	9	6007430	6007430	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZCCHC6	79670	broad.mit.edu	37	9	88953842	88953842	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZMAT1	84460	broad.mit.edu	37	X	101138751	101138751	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZMAT1	84460	broad.mit.edu	37	X	101141649	101141649	+	Missense_Mutation	SNP	A	G	G			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
FUNDC1	139341	broad.mit.edu	37	X	44401284	44401284	+	Missense_Mutation	SNP	T	C	C			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91132785	91132785	+	Missense_Mutation	SNP	G	C	C			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126412722	126412722	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CU-A0YN-01	TCGA-CU-A0YN-01									Somatic	Phase_I	Capture				Illumina GAIIx
