Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
MGEA5	10724	broad.mit.edu	37	10	103547231	103547231	+	Missense_Mutation	SNP	A	G	G			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15614236	15614236	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR13A1	79290	broad.mit.edu	37	10	45799078	45799078	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGAP22	58504	broad.mit.edu	37	10	49667753	49667753	+	Silent	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC35F2	54733	broad.mit.edu	37	11	107677535	107677535	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
SDHD	6392	broad.mit.edu	37	11	111959637	111959637	+	Silent	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
APOA4	337	broad.mit.edu	37	11	116692360	116692360	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
MLL	4297	broad.mit.edu	37	11	118375024	118375024	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
ROBO4	54538	broad.mit.edu	37	11	124755027	124755027	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
USH1C	10083	broad.mit.edu	37	11	17553040	17553040	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAB3IL1	5866	broad.mit.edu	37	11	61675662	61675662	+	Missense_Mutation	SNP	G	C	C			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCKBR	887	broad.mit.edu	37	11	6291461	6291461	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAP4K2	5871	broad.mit.edu	37	11	64557669	64557669	+	Missense_Mutation	SNP	C	G	G			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATG2A	23130	broad.mit.edu	37	11	64662776	64662776	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
INPPL1	3636	broad.mit.edu	37	11	71949087	71949087	+	Missense_Mutation	SNP	C	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
SFRS9	8683	broad.mit.edu	37	12	120901793	120901793	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
KNTC1	9735	broad.mit.edu	37	12	123057784	123057784	+	Missense_Mutation	SNP	G	C	C			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
KNTC1	9735	broad.mit.edu	37	12	123057806	123057806	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDE3A	5139	broad.mit.edu	37	12	20833109	20833109	+	Silent	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
C12orf11	55726	broad.mit.edu	37	12	27077408	27077408	+	Silent	SNP	C	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
GALNT8	26290	broad.mit.edu	37	12	4835834	4835834	+	Missense_Mutation	SNP	G	C	C			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
CYP27B1	1594	broad.mit.edu	37	12	58157882	58157882	+	Missense_Mutation	SNP	T	G	G			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
DCLK1	9201	broad.mit.edu	37	13	36401843	36401843	+	Missense_Mutation	SNP	G	C	C			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
LPAR6	10161	broad.mit.edu	37	13	48985928	48985928	+	Nonsense_Mutation	SNP	A	C	C			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
CIDEB	27141	broad.mit.edu	37	14	24776597	24776597	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTGDR	5729	broad.mit.edu	37	14	52735281	52735281	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPHB5	122876	broad.mit.edu	37	14	63784372	63784372	+	Silent	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACTN1	87	broad.mit.edu	37	14	69371375	69371375	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
INO80	54617	broad.mit.edu	37	15	41372084	41372084	+	Nonsense_Mutation	SNP	T	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPG11	80208	broad.mit.edu	37	15	44876169	44876169	+	Missense_Mutation	SNP	A	C	C			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPG11	80208	broad.mit.edu	37	15	44876180	44876180	+	Missense_Mutation	SNP	A	C	C			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
CSNK1G1	53944	broad.mit.edu	37	15	64496768	64496768	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
CD276	80381	broad.mit.edu	37	15	73994784	73994784	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
SGK269	79834	broad.mit.edu	37	15	77426021	77426021	+	Missense_Mutation	SNP	C	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	87217600	87217600	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
PARN	5073	broad.mit.edu	37	16	14676098	14676098	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
UMOD	7369	broad.mit.edu	37	16	20352631	20352631	+	Silent	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
TNRC6A	27327	broad.mit.edu	37	16	24834920	24834920	+	Missense_Mutation	SNP	G	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF597	146434	broad.mit.edu	37	16	3486866	3486866	+	Missense_Mutation	SNP	T	G	G			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
C16orf89	146556	broad.mit.edu	37	16	5110356	5110356	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61891104	61891104	+	Missense_Mutation	SNP	C	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
SF3B3	23450	broad.mit.edu	37	16	70575582	70575582	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	70884498	70884498	+	Silent	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
MSLNL	401827	broad.mit.edu	37	16	823284	823284	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10448678	10448678	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
MPRIP	23164	broad.mit.edu	37	17	17080692	17080692	+	Silent	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
MPRIP	23164	broad.mit.edu	37	17	17080713	17080713	+	Silent	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYO19	80179	broad.mit.edu	37	17	34857010	34857010	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACE	1636	broad.mit.edu	37	17	61568636	61568636	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC40	55036	broad.mit.edu	37	17	78022498	78022498	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPTOR	57521	broad.mit.edu	37	17	78704398	78704398	+	Silent	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGEF15	22899	broad.mit.edu	37	17	8216353	8216353	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
C18orf8	29919	broad.mit.edu	37	18	21110070	21110070	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
HRH4	59340	broad.mit.edu	37	18	22048844	22048844	+	Missense_Mutation	SNP	C	G	G			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF521	25925	broad.mit.edu	37	18	22805418	22805418	+	Missense_Mutation	SNP	T	C	C			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA1012	22878	broad.mit.edu	37	18	29432467	29432467	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYCE2	256126	broad.mit.edu	37	19	13029049	13029049	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
MLL4	9757	broad.mit.edu	37	19	36211795	36211795	+	Missense_Mutation	SNP	A	G	G			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
PAF1	54623	broad.mit.edu	37	19	39876761	39876761	+	Missense_Mutation	SNP	C	G	G			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
KLK1	3816	broad.mit.edu	37	19	51323464	51323464	+	Missense_Mutation	SNP	C	G	G			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
PALM	5064	broad.mit.edu	37	19	746578	746578	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
CD58	965	broad.mit.edu	37	1	117078842	117078842	+	Missense_Mutation	SNP	G	C	C			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRAMEF6	440561	broad.mit.edu	37	1	13001218	13001218	+	Silent	SNP	G	C	C			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATAD3B	83858	broad.mit.edu	37	1	1423280	1423280	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
NUDT17	200035	broad.mit.edu	37	1	145588986	145588986	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
GON4L	54856	broad.mit.edu	37	1	155720458	155720458	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
NADK	65220	broad.mit.edu	37	1	1684482	1684482	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIF14	9928	broad.mit.edu	37	1	200571154	200571154	+	Missense_Mutation	SNP	C	G	G			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR2L2	26246	broad.mit.edu	37	1	248202245	248202245	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARID1A	8289	broad.mit.edu	37	1	27059204	27059204	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARID1A	8289	broad.mit.edu	37	1	27059260	27059260	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
RLF	6018	broad.mit.edu	37	1	40661404	40661404	+	Missense_Mutation	SNP	T	G	G			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
ECHDC2	55268	broad.mit.edu	37	1	53370432	53370432	+	Silent	SNP	C	G	G			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
TNFRSF9	3604	broad.mit.edu	37	1	7995116	7995116	+	Silent	SNP	C	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
FLRT3	23767	broad.mit.edu	37	20	14307451	14307451	+	Silent	SNP	C	G	G			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
GINS1	9837	broad.mit.edu	37	20	25405846	25405846	+	Splice_Site	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF337	26152	broad.mit.edu	37	20	25666702	25666702	+	Silent	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
BPIL1	80341	broad.mit.edu	37	20	31606901	31606901	+	Missense_Mutation	SNP	C	G	G			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
SEMG1	6406	broad.mit.edu	37	20	43836572	43836572	+	Missense_Mutation	SNP	A	G	G			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDH22	64405	broad.mit.edu	37	20	44879792	44879792	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDXK	8566	broad.mit.edu	37	21	45173597	45173597	+	Silent	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
LSS	4047	broad.mit.edu	37	21	47627356	47627356	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
C22orf29	79680	broad.mit.edu	37	22	19839452	19839452	+	Silent	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
ASPHD2	57168	broad.mit.edu	37	22	26839131	26839131	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
C22orf30	253143	broad.mit.edu	37	22	32097734	32097734	+	Silent	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
C22orf30	253143	broad.mit.edu	37	22	32099658	32099658	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
LARGE	9215	broad.mit.edu	37	22	34157439	34157439	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
MICALL1	85377	broad.mit.edu	37	22	38329085	38329085	+	Silent	SNP	C	G	G			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
KLHDC7B	113730	broad.mit.edu	37	22	50987674	50987674	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
CPT1B	1375	broad.mit.edu	37	22	51009598	51009598	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
ERCC3	2071	broad.mit.edu	37	2	128046346	128046346	+	Missense_Mutation	SNP	A	G	G			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
RND3	390	broad.mit.edu	37	2	151326590	151326590	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPC25	57405	broad.mit.edu	37	2	169732631	169732631	+	Silent	SNP	A	G	G			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179430538	179430538	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
RFTN2	130132	broad.mit.edu	37	2	198540158	198540158	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
PER2	8864	broad.mit.edu	37	2	239185809	239185809	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF512	84450	broad.mit.edu	37	2	27822539	27822539	+	Missense_Mutation	SNP	C	A	A	rs11539165		TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
SMYD1	150572	broad.mit.edu	37	2	88409880	88409880	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
HEG1	57493	broad.mit.edu	37	3	124728594	124728594	+	Missense_Mutation	SNP	T	C	C			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
STAG1	10274	broad.mit.edu	37	3	136088080	136088080	+	Silent	SNP	T	C	C			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
RBP2	5948	broad.mit.edu	37	3	139181129	139181129	+	Missense_Mutation	SNP	A	G	G			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
MLF1	4291	broad.mit.edu	37	3	158314703	158314703	+	Missense_Mutation	SNP	G	C	C			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC2A2	6514	broad.mit.edu	37	3	170716012	170716012	+	Silent	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
EXOG	9941	broad.mit.edu	37	3	38565593	38565593	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
NISCH	11188	broad.mit.edu	37	3	52526369	52526369	+	Silent	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
SORBS2	8470	broad.mit.edu	37	4	186544867	186544867	+	Silent	SNP	C	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
FER	2241	broad.mit.edu	37	5	108436173	108436173	+	Silent	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHB3	56132	broad.mit.edu	37	5	140480521	140480521	+	Silent	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHGA1	56114	broad.mit.edu	37	5	140710506	140710506	+	Silent	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHGA4	56111	broad.mit.edu	37	5	140736823	140736823	+	Missense_Mutation	SNP	G	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHGB4	8641	broad.mit.edu	37	5	140769617	140769617	+	Missense_Mutation	SNP	G	C	C			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIO	7204	broad.mit.edu	37	5	14359563	14359563	+	Missense_Mutation	SNP	G	C	C			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
IRX1	79192	broad.mit.edu	37	5	3600733	3600733	+	Silent	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIM23	373	broad.mit.edu	37	5	64906836	64906836	+	Missense_Mutation	SNP	C	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAP1B	4131	broad.mit.edu	37	5	71493610	71493610	+	Missense_Mutation	SNP	G	C	C			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARSB	411	broad.mit.edu	37	5	78076390	78076390	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
PAPD4	167153	broad.mit.edu	37	5	78964813	78964813	+	Silent	SNP	C	G	G			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
CKMT2	1160	broad.mit.edu	37	5	80561982	80561982	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
ROS1	6098	broad.mit.edu	37	6	117710590	117710590	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
RNF217	154214	broad.mit.edu	37	6	125366487	125366487	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
THEMIS	387357	broad.mit.edu	37	6	128150707	128150707	+	Missense_Mutation	SNP	T	G	G			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
FUCA2	2519	broad.mit.edu	37	6	143825240	143825240	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLEKHG1	57480	broad.mit.edu	37	6	151116991	151116991	+	Splice_Site	SNP	G	C	C			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLEKHG1	57480	broad.mit.edu	37	6	151116998	151116998	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152651857	152651857	+	Missense_Mutation	SNP	T	C	C			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
MDC1	9656	broad.mit.edu	37	6	30673687	30673687	+	Silent	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
BAT1	7919	broad.mit.edu	37	6	31498940	31498940	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
GLO1	2739	broad.mit.edu	37	6	38649846	38649846	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
DST	667	broad.mit.edu	37	6	56391236	56391236	+	Missense_Mutation	SNP	C	G	G			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
DST	667	broad.mit.edu	37	6	56391245	56391245	+	Missense_Mutation	SNP	C	G	G			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACHE	43	broad.mit.edu	37	7	100489998	100489998	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
TAS2R16	50833	broad.mit.edu	37	7	122635518	122635518	+	Silent	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126544080	126544080	+	Missense_Mutation	SNP	C	G	G			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
CUL1	8454	broad.mit.edu	37	7	148484186	148484186	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
TYW1	55253	broad.mit.edu	37	7	66479413	66479413	+	Silent	SNP	T	C	C			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
SUN1	23353	broad.mit.edu	37	7	897568	897568	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
MTMR9	66036	broad.mit.edu	37	8	11172556	11172556	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
INTS9	55756	broad.mit.edu	37	8	28651378	28651378	+	Missense_Mutation	SNP	A	G	G			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
GSR	2936	broad.mit.edu	37	8	30537169	30537169	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
FGFR1	2260	broad.mit.edu	37	8	38283753	38283753	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41581117	41581117	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNM1	1759	broad.mit.edu	37	9	130986561	130986561	+	Missense_Mutation	SNP	G	C	C			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL5A1	1289	broad.mit.edu	37	9	137664657	137664657	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
PHF6	84295	broad.mit.edu	37	X	133512098	133512098	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAGEA1	4100	broad.mit.edu	37	X	152482885	152482885	+	Silent	SNP	G	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
DDX53	168400	broad.mit.edu	37	X	23019072	23019072	+	Missense_Mutation	SNP	C	A	A			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
DDX53	168400	broad.mit.edu	37	X	23019219	23019219	+	Missense_Mutation	SNP	A	T	T			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
MED12	9968	broad.mit.edu	37	X	70339981	70339981	+	Missense_Mutation	SNP	G	C	C			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
NOTCH2	4853	broad.mit.edu	37	1	120612003	120612004	+	Frame_Shift_Del	DEL	GG	-	-			TCGA-CU-A0YO-01	TCGA-CU-A0YO-01									Somatic	Phase_I	Capture				Illumina GAIIx
