Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ATRNL1	26033	broad.mit.edu	37	10	117607452	117607452	+	Missense_Mutation	SNP	T	G	G			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CTBP2	1488	broad.mit.edu	37	10	126727575	126727575	+	Missense_Mutation	SNP	T	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
INPP5A	3632	broad.mit.edu	37	10	134579295	134579295	+	Missense_Mutation	SNP	G	C	C			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYCE1	93426	broad.mit.edu	37	10	135369108	135369108	+	Silent	SNP	G	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	16911660	16911660	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	16911845	16911845	+	Missense_Mutation	SNP	C	G	G			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARMC3	219681	broad.mit.edu	37	10	23290965	23290965	+	Missense_Mutation	SNP	A	G	G			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
DLG5	9231	broad.mit.edu	37	10	79567584	79567584	+	Missense_Mutation	SNP	T	G	G			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
POLR3A	11128	broad.mit.edu	37	10	79769683	79769683	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA1377	57562	broad.mit.edu	37	11	101833686	101833686	+	Missense_Mutation	SNP	A	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATM	472	broad.mit.edu	37	11	108218083	108218083	+	Missense_Mutation	SNP	A	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CBL	867	broad.mit.edu	37	11	119170369	119170369	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
COPB1	1315	broad.mit.edu	37	11	14490389	14490389	+	Missense_Mutation	SNP	C	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
INSC	387755	broad.mit.edu	37	11	15212291	15212291	+	Silent	SNP	A	G	G			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNA4	3739	broad.mit.edu	37	11	30033503	30033503	+	Silent	SNP	C	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYBPC3	4607	broad.mit.edu	37	11	47359095	47359095	+	Missense_Mutation	SNP	G	C	C			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR51A4	401666	broad.mit.edu	37	11	4967692	4967692	+	Silent	SNP	A	G	G			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR51A2	401667	broad.mit.edu	37	11	4976305	4976305	+	Silent	SNP	A	G	G			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
NLRP14	338323	broad.mit.edu	37	11	7079645	7079645	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC5A8	160728	broad.mit.edu	37	12	101595946	101595946	+	Missense_Mutation	SNP	A	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PAH	5053	broad.mit.edu	37	12	103249082	103249082	+	Missense_Mutation	SNP	T	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRDM4	11108	broad.mit.edu	37	12	108140192	108140192	+	Missense_Mutation	SNP	A	G	G			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
NAA25	80018	broad.mit.edu	37	12	112499125	112499125	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR133	283383	broad.mit.edu	37	12	131487771	131487771	+	Silent	SNP	C	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANKLE2	23141	broad.mit.edu	37	12	133327289	133327289	+	Missense_Mutation	SNP	T	C	C			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLCO1B3	28234	broad.mit.edu	37	12	21242857	21242857	+	Silent	SNP	C	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCC9	10060	broad.mit.edu	37	12	22028606	22028606	+	Missense_Mutation	SNP	C	G	G			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ITPR2	3709	broad.mit.edu	37	12	26492374	26492374	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC4A8	9498	broad.mit.edu	37	12	51856143	51856143	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PAN2	9924	broad.mit.edu	37	12	56720613	56720613	+	Silent	SNP	A	G	G			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRIG3	121227	broad.mit.edu	37	12	59271541	59271541	+	Missense_Mutation	SNP	G	C	C			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
XPOT	11260	broad.mit.edu	37	12	64815090	64815090	+	Missense_Mutation	SNP	A	G	G			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CD27	939	broad.mit.edu	37	12	6554303	6554304	+	Missense_Mutation	DNP	CC	AG	AG			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CNOT2	4848	broad.mit.edu	37	12	70672040	70672040	+	Nonsense_Mutation	SNP	A	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
NBEA	26960	broad.mit.edu	37	13	35923273	35923273	+	Missense_Mutation	SNP	A	G	G			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRPC4	7223	broad.mit.edu	37	13	38320157	38320157	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SCEL	8796	broad.mit.edu	37	13	78178541	78178541	+	Missense_Mutation	SNP	A	G	G			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRP10	26020	broad.mit.edu	37	14	23344694	23344694	+	Silent	SNP	C	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
MIPOL1	145282	broad.mit.edu	37	14	37838794	37838795	+	Missense_Mutation	DNP	CT	GA	GA			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
FSIP1	161835	broad.mit.edu	37	15	39910371	39910371	+	Missense_Mutation	SNP	T	C	C			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZFP106	64397	broad.mit.edu	37	15	42731243	42731243	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
IGF1R	3480	broad.mit.edu	37	15	99250976	99250976	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
C16orf54	283897	broad.mit.edu	37	16	29756070	29756070	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
NME4	4833	broad.mit.edu	37	16	449378	449378	+	Splice_Site	SNP	G	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACD	65057	broad.mit.edu	37	16	67692470	67692470	+	Missense_Mutation	SNP	G	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CENPT	80152	broad.mit.edu	37	16	67863976	67863976	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
VAC14	55697	broad.mit.edu	37	16	70834774	70834774	+	Silent	SNP	G	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
FTSJD1	55783	broad.mit.edu	37	16	71319027	71319027	+	Missense_Mutation	SNP	A	C	C			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
TOP3A	7156	broad.mit.edu	37	17	18196135	18196135	+	Missense_Mutation	SNP	T	C	C			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
EFCAB5	374786	broad.mit.edu	37	17	28405458	28405458	+	Missense_Mutation	SNP	C	G	G			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
EVI2B	2124	broad.mit.edu	37	17	29631980	29631980	+	Missense_Mutation	SNP	C	G	G			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZZEF1	23140	broad.mit.edu	37	17	3920781	3920781	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLEKHM1	9842	broad.mit.edu	37	17	43545795	43545795	+	Missense_Mutation	SNP	G	C	C			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
KPNB1	3837	broad.mit.edu	37	17	45750422	45750422	+	Missense_Mutation	SNP	A	G	G			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
HOXB4	3214	broad.mit.edu	37	17	46654171	46654171	+	Missense_Mutation	SNP	C	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
HEATR6	63897	broad.mit.edu	37	17	58145064	58145064	+	Silent	SNP	T	C	C			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDC42EP4	23580	broad.mit.edu	37	17	71281971	71281971	+	Silent	SNP	G	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PER1	5187	broad.mit.edu	37	17	8046123	8046123	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
AFG3L2	10939	broad.mit.edu	37	18	12329585	12329585	+	Silent	SNP	C	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
LAMA3	3909	broad.mit.edu	37	18	21437915	21437915	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
TYK2	7297	broad.mit.edu	37	19	10475635	10475635	+	Silent	SNP	G	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
COMP	1311	broad.mit.edu	37	19	18896789	18896789	+	Missense_Mutation	SNP	T	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF253	56242	broad.mit.edu	37	19	20003518	20003518	+	Missense_Mutation	SNP	C	G	G			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZBTB32	27033	broad.mit.edu	37	19	36205902	36205902	+	Missense_Mutation	SNP	A	C	C			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
HNRNPL	3191	broad.mit.edu	37	19	39329230	39329230	+	Missense_Mutation	SNP	T	C	C			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLEKHG2	64857	broad.mit.edu	37	19	39909602	39909602	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
C19orf54	284325	broad.mit.edu	37	19	41248527	41248527	+	Silent	SNP	G	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CEACAM6	4680	broad.mit.edu	37	19	42260767	42260767	+	Silent	SNP	G	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ERCC2	2068	broad.mit.edu	37	19	45856352	45856352	+	Missense_Mutation	SNP	C	G	G			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
GIPR	2696	broad.mit.edu	37	19	46172841	46172841	+	Silent	SNP	G	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC6A16	28968	broad.mit.edu	37	19	49797169	49797169	+	Silent	SNP	G	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
VRK3	51231	broad.mit.edu	37	19	50492998	50492998	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CTU1	90353	broad.mit.edu	37	19	51607330	51607330	+	Missense_Mutation	SNP	T	C	C			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF813	126017	broad.mit.edu	37	19	53994029	53994029	+	Silent	SNP	T	G	G			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
LENG8	114823	broad.mit.edu	37	19	54971986	54971986	+	Silent	SNP	C	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF317	57693	broad.mit.edu	37	19	9271246	9271247	+	Missense_Mutation	DNP	GA	TT	TT			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
MASP2	10747	broad.mit.edu	37	1	11097837	11097837	+	Silent	SNP	A	G	G			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
MOV10	4343	broad.mit.edu	37	1	113217556	113217556	+	Missense_Mutation	SNP	C	G	G			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
TNFRSF4	7293	broad.mit.edu	37	1	1148065	1148065	+	Silent	SNP	T	C	C			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PUSL1	126789	broad.mit.edu	37	1	1244883	1244883	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRAMEF12	390999	broad.mit.edu	37	1	12835714	12835714	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
NES	10763	broad.mit.edu	37	1	156639511	156639511	+	Missense_Mutation	SNP	T	C	C			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDK11B	984	broad.mit.edu	37	1	1572863	1572863	+	Missense_Mutation	SNP	C	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
OLFML2B	25903	broad.mit.edu	37	1	161967984	161967984	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SELP	6403	broad.mit.edu	37	1	169578782	169578782	+	Silent	SNP	A	G	G			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNM3	26052	broad.mit.edu	37	1	172007570	172007570	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
XPR1	9213	broad.mit.edu	37	1	180843064	180843064	+	Silent	SNP	A	G	G			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CAPZB	832	broad.mit.edu	37	1	19670914	19670914	+	Silent	SNP	T	C	C			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRAF5	7188	broad.mit.edu	37	1	211529792	211529792	+	Silent	SNP	T	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
BMP8B	656	broad.mit.edu	37	1	40228856	40228856	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
FGGY	55277	broad.mit.edu	37	1	59787249	59787249	+	Missense_Mutation	SNP	A	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
EFCAB7	84455	broad.mit.edu	37	1	64027423	64027423	+	Silent	SNP	T	C	C			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
TNFRSF9	3604	broad.mit.edu	37	1	7993258	7993258	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
BCL10	8915	broad.mit.edu	37	1	85741980	85741980	+	Missense_Mutation	SNP	T	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
RERE	473	broad.mit.edu	37	1	8601355	8601355	+	Missense_Mutation	SNP	A	C	C			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SAMD11	148398	broad.mit.edu	37	1	871255	871255	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF133	7692	broad.mit.edu	37	20	18295856	18295856	+	Missense_Mutation	SNP	G	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
POFUT1	23509	broad.mit.edu	37	20	30803206	30803206	+	Silent	SNP	T	C	C			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDK5RAP1	51654	broad.mit.edu	37	20	31962020	31962020	+	Splice_Site	SNP	T	G	G			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CPNE1	8904	broad.mit.edu	37	20	34214192	34214192	+	Missense_Mutation	SNP	T	C	C			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CTCFL	140690	broad.mit.edu	37	20	56099195	56099195	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ICOSLG	23308	broad.mit.edu	37	21	45651249	45651249	+	Missense_Mutation	SNP	A	C	C			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
EP300	2033	broad.mit.edu	37	22	41489057	41489057	+	Missense_Mutation	SNP	A	G	G			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACO2	50	broad.mit.edu	37	22	41865168	41865168	+	Silent	SNP	A	G	G			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
GTSE1	51512	broad.mit.edu	37	22	46704392	46704392	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CPT1B	1375	broad.mit.edu	37	22	51007850	51007850	+	Missense_Mutation	SNP	T	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC5A7	60482	broad.mit.edu	37	2	108604766	108604766	+	Missense_Mutation	SNP	T	C	C			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	137814383	137814383	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PKP4	8502	broad.mit.edu	37	2	159519804	159519804	+	Silent	SNP	C	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168104737	168104737	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADAM23	8745	broad.mit.edu	37	2	207436497	207436497	+	Missense_Mutation	SNP	C	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
HDAC4	9759	broad.mit.edu	37	2	240011777	240011777	+	Silent	SNP	C	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR113	165082	broad.mit.edu	37	2	26533928	26533928	+	Missense_Mutation	SNP	C	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM179A	165186	broad.mit.edu	37	2	29258360	29258360	+	Silent	SNP	G	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PNPT1	87178	broad.mit.edu	37	2	55895071	55895071	+	Silent	SNP	T	C	C			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71795448	71795448	+	Missense_Mutation	SNP	G	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA1407	57577	broad.mit.edu	37	3	113699547	113699547	+	Missense_Mutation	SNP	C	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
TPRA1	131601	broad.mit.edu	37	3	127294260	127294260	+	Silent	SNP	G	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130292969	130292969	+	Missense_Mutation	SNP	C	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAJC13	23317	broad.mit.edu	37	3	132247081	132247081	+	Missense_Mutation	SNP	A	G	G			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SKIL	6498	broad.mit.edu	37	3	170079087	170079087	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYRIP	25924	broad.mit.edu	37	3	40192632	40192632	+	Silent	SNP	C	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
VIPR1	7433	broad.mit.edu	37	3	42577695	42577695	+	Silent	SNP	G	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
BAP1	8314	broad.mit.edu	37	3	52440379	52440379	+	Missense_Mutation	SNP	C	G	G			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYOZ2	51778	broad.mit.edu	37	4	120107259	120107259	+	Silent	SNP	T	C	C			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYOZ2	51778	broad.mit.edu	37	4	120107338	120107338	+	Missense_Mutation	SNP	G	C	C			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBXW7	55294	broad.mit.edu	37	4	153247289	153247289	+	Missense_Mutation	SNP	G	C	C			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
WWC2	80014	broad.mit.edu	37	4	184114848	184114848	+	Missense_Mutation	SNP	C	G	G			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PGM2	55276	broad.mit.edu	37	4	37850207	37850207	+	Silent	SNP	G	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
UGT2A3	79799	broad.mit.edu	37	4	69817427	69817427	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
UGT2B7	7364	broad.mit.edu	37	4	69962362	69962362	+	Missense_Mutation	SNP	A	G	G			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
HNRPDL	9987	broad.mit.edu	37	4	83347685	83347685	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMCO6	55374	broad.mit.edu	37	5	140024591	140024591	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHAC1	56135	broad.mit.edu	37	5	140308488	140308488	+	Missense_Mutation	SNP	T	C	C			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CSF1R	1436	broad.mit.edu	37	5	149460456	149460456	+	Missense_Mutation	SNP	A	G	G			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
NSD1	64324	broad.mit.edu	37	5	176562709	176562709	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
MGAT1	4245	broad.mit.edu	37	5	180219243	180219243	+	Missense_Mutation	SNP	G	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR2V2	285659	broad.mit.edu	37	5	180581946	180581946	+	Missense_Mutation	SNP	G	C	C			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
C5orf42	65250	broad.mit.edu	37	5	37183002	37183002	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
NUP155	9631	broad.mit.edu	37	5	37293028	37293028	+	Silent	SNP	T	C	C			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SKIV2L2	23517	broad.mit.edu	37	5	54649078	54649078	+	Missense_Mutation	SNP	A	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM169A	26049	broad.mit.edu	37	5	74077398	74077398	+	Missense_Mutation	SNP	C	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZDHHC11	79844	broad.mit.edu	37	5	837498	837498	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SIM1	6492	broad.mit.edu	37	6	100868687	100868688	+	Nonsense_Mutation	DNP	GG	TC	TC			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAET1G	353091	broad.mit.edu	37	6	150240778	150240778	+	Missense_Mutation	SNP	C	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARID1B	57492	broad.mit.edu	37	6	157521944	157521944	+	Missense_Mutation	SNP	C	G	G			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
CAP2	10486	broad.mit.edu	37	6	17539634	17539634	+	Silent	SNP	T	C	C			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPX6	257202	broad.mit.edu	37	6	28474199	28474199	+	Missense_Mutation	SNP	A	C	C			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
BTNL2	56244	broad.mit.edu	37	6	32372796	32372796	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZBTB22	9278	broad.mit.edu	37	6	33284382	33284382	+	Silent	SNP	G	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC17A5	26503	broad.mit.edu	37	6	74331540	74331540	+	Missense_Mutation	SNP	A	G	G			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
LUC7L2	51631	broad.mit.edu	37	7	139092032	139092032	+	Missense_Mutation	SNP	A	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABP1	26	broad.mit.edu	37	7	150554592	150554592	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM126A	84668	broad.mit.edu	37	7	22985595	22985595	+	Silent	SNP	T	C	C			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
GLI3	2737	broad.mit.edu	37	7	42004980	42004980	+	Missense_Mutation	SNP	G	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
OGDH	4967	broad.mit.edu	37	7	44736651	44736651	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48284188	48284188	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
UBR5	51366	broad.mit.edu	37	8	103291388	103291388	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRPS1	7227	broad.mit.edu	37	8	116632282	116632282	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139620181	139620181	+	Missense_Mutation	SNP	G	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYST3	7994	broad.mit.edu	37	8	41794882	41794882	+	Missense_Mutation	SNP	T	C	C			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP6V1H	51606	broad.mit.edu	37	8	54745612	54745612	+	Missense_Mutation	SNP	T	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
MOS	4342	broad.mit.edu	37	8	57026488	57026488	+	Silent	SNP	C	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIF12	113220	broad.mit.edu	37	9	116856478	116856478	+	Silent	SNP	T	C	C			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
PNPLA7	375775	broad.mit.edu	37	9	140444633	140444633	+	Missense_Mutation	SNP	T	C	C			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
DENND4C	55667	broad.mit.edu	37	9	19296129	19296129	+	Missense_Mutation	SNP	A	G	G			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
GNA14	9630	broad.mit.edu	37	9	80262686	80262686	+	Silent	SNP	G	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
AGTPBP1	23287	broad.mit.edu	37	9	88257814	88257814	+	Silent	SNP	T	C	C			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
NKRF	55922	broad.mit.edu	37	X	118723319	118723319	+	Missense_Mutation	SNP	T	C	C			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
BCORL1	63035	broad.mit.edu	37	X	129189899	129189899	+	Silent	SNP	C	A	A			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
BMX	660	broad.mit.edu	37	X	15574250	15574250	+	Missense_Mutation	SNP	C	T	T			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACE2	59272	broad.mit.edu	37	X	15599440	15599440	+	Missense_Mutation	SNP	T	G	G			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
BBS10	79738	broad.mit.edu	37	12	76742124	76742126	+	In_Frame_Del	DEL	CAT	-	-			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
LAMA3	3909	broad.mit.edu	37	18	21437864	21437877	+	Frame_Shift_Del	DEL	GCTTTCCTGAGTGT	-	-			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ME2	4200	broad.mit.edu	37	18	48450474	48450480	+	Frame_Shift_Del	DEL	AAAGCAA	-	-			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
XPR1	9213	broad.mit.edu	37	1	180843056	180843056	+	Frame_Shift_Del	DEL	T	-	-			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
ELF3	1999	broad.mit.edu	37	1	201982385	201982389	+	Frame_Shift_Del	DEL	AAGAG	-	-			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129498972	129498972	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
IMPAD1	54928	broad.mit.edu	37	8	57905985	57906000	+	Frame_Shift_Del	DEL	CCGCGGGCCCCGCCGC	-	-			TCGA-CU-A0YR-01	TCGA-CU-A0YR-01									Somatic	Phase_I	Capture				Illumina GAIIx
