Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ENTPD7	57089	broad.mit.edu	37	10	101445633	101445633	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDZD7	79955	broad.mit.edu	37	10	102777862	102777862	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FGF8	2253	broad.mit.edu	37	10	103531247	103531247	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPRC1	23082	broad.mit.edu	37	10	103900177	103900177	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPRC1	23082	broad.mit.edu	37	10	103900464	103900464	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPRC1	23082	broad.mit.edu	37	10	103901412	103901412	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
C10orf79	80217	broad.mit.edu	37	10	105990389	105990389	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADRA2A	150	broad.mit.edu	37	10	112839122	112839122	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TACC2	10579	broad.mit.edu	37	10	123844346	123844346	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
DOCK1	1793	broad.mit.edu	37	10	129245729	129245729	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MKI67	4288	broad.mit.edu	37	10	129913744	129913744	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PWWP2B	170394	broad.mit.edu	37	10	134219559	134219559	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MTG1	92170	broad.mit.edu	37	10	135213089	135213089	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC39A12	221074	broad.mit.edu	37	10	18331702	18331702	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CUL2	8453	broad.mit.edu	37	10	35317794	35317794	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FZD8	8325	broad.mit.edu	37	10	35929518	35929518	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
HNRNPF	3185	broad.mit.edu	37	10	43883236	43883236	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF239	8187	broad.mit.edu	37	10	44052855	44052855	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FRMPD2	143162	broad.mit.edu	37	10	49450206	49450206	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
BICC1	80114	broad.mit.edu	37	10	60273078	60273078	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
HK1	3098	broad.mit.edu	37	10	71144211	71144211	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRF1	5551	broad.mit.edu	37	10	72358051	72358051	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CAMK2G	818	broad.mit.edu	37	10	75609037	75609037	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
BTAF1	9044	broad.mit.edu	37	10	93719635	93719635	+	Missense_Mutation	SNP	G	A	A	rs112687582		TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
IDE	3416	broad.mit.edu	37	10	94267358	94267358	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
EXOC6	54536	broad.mit.edu	37	10	94757311	94757311	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ALDH18A1	5832	broad.mit.edu	37	10	97376261	97376261	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNTT	1791	broad.mit.edu	37	10	98078150	98078150	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGAP19	84986	broad.mit.edu	37	10	99023225	99023225	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MUC6	4588	broad.mit.edu	37	11	1025893	1025893	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RDX	5962	broad.mit.edu	37	11	110124732	110124732	+	Missense_Mutation	SNP	T	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
BUD13	84811	broad.mit.edu	37	11	116640940	116640940	+	Splice_Site	SNP	T	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MLL	4297	broad.mit.edu	37	11	118344511	118344511	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIM29	23650	broad.mit.edu	37	11	120008356	120008356	+	Silent	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GRIK4	2900	broad.mit.edu	37	11	120673512	120673512	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MICAL2	9645	broad.mit.edu	37	11	12278354	12278354	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MICAL2	9645	broad.mit.edu	37	11	12278388	12278388	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ROBO4	54538	broad.mit.edu	37	11	124757737	124757737	+	Splice_Site	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC37A2	219855	broad.mit.edu	37	11	124949113	124949113	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGAP32	9743	broad.mit.edu	37	11	128910840	128910840	+	Missense_Mutation	SNP	T	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
BARX2	8538	broad.mit.edu	37	11	129246012	129246012	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
BARX2	8538	broad.mit.edu	37	11	129246023	129246023	+	Silent	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SNX19	399979	broad.mit.edu	37	11	130785628	130785628	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRRG4	79056	broad.mit.edu	37	11	32858272	32858272	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIM44	54765	broad.mit.edu	37	11	35684687	35684687	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40137629	40137629	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
AMBRA1	55626	broad.mit.edu	37	11	46430220	46430220	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR4A47	403253	broad.mit.edu	37	11	48510885	48510885	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR51A7	119687	broad.mit.edu	37	11	4928820	4928822	+	Missense_Mutation	TNP	CCC	TTT	TTT			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR51Q1	390061	broad.mit.edu	37	11	5444186	5444186	+	Silent	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMX2	51075	broad.mit.edu	37	11	57506699	57506699	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR6Q1	219952	broad.mit.edu	37	11	57798494	57798494	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
LPXN	9404	broad.mit.edu	37	11	58322349	58322349	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GLYAT	10249	broad.mit.edu	37	11	58478139	58478139	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MPEG1	219972	broad.mit.edu	37	11	58978821	58978821	+	Silent	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
OSBP	5007	broad.mit.edu	37	11	59349008	59349008	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MS4A1	931	broad.mit.edu	37	11	60229875	60229875	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
EEF1G	1937	broad.mit.edu	37	11	62334336	62334336	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
HRASLS5	117245	broad.mit.edu	37	11	63235859	63235859	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SMPD1	6609	broad.mit.edu	37	11	6412757	6412757	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
APBB1	322	broad.mit.edu	37	11	6432430	6432430	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATG2A	23130	broad.mit.edu	37	11	64668054	64668054	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RELA	5970	broad.mit.edu	37	11	65421919	65421919	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SF3B2	10992	broad.mit.edu	37	11	65824745	65824745	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RBM4	5936	broad.mit.edu	37	11	66410998	66410998	+	Silent	SNP	C	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RBM4B	83759	broad.mit.edu	37	11	66444285	66444285	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TPCN2	219931	broad.mit.edu	37	11	68838874	68838874	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR10A2	341276	broad.mit.edu	37	11	6891489	6891489	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYTL2	54843	broad.mit.edu	37	11	85437234	85437234	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PIWIL4	143689	broad.mit.edu	37	11	94340677	94340677	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SBF2	81846	broad.mit.edu	37	11	9806738	9806738	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CLEC9A	283420	broad.mit.edu	37	12	10218209	10218209	+	Missense_Mutation	SNP	A	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
C12orf48	55010	broad.mit.edu	37	12	102559617	102559617	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC41A2	84102	broad.mit.edu	37	12	105282830	105282830	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA1033	23325	broad.mit.edu	37	12	105558049	105558049	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
NAA25	80018	broad.mit.edu	37	12	112477111	112477111	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
C12orf51	283450	broad.mit.edu	37	12	112608964	112608964	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
C12orf52	84934	broad.mit.edu	37	12	113629482	113629482	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MED13L	23389	broad.mit.edu	37	12	116549237	116549237	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CIT	11113	broad.mit.edu	37	12	120221778	120221778	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
HIP1R	9026	broad.mit.edu	37	12	123342655	123342655	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
DUSP16	80824	broad.mit.edu	37	12	12630725	12630725	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
DUSP16	80824	broad.mit.edu	37	12	12630832	12630832	+	Silent	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
DUSP16	80824	broad.mit.edu	37	12	12630910	12630910	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHFR	55743	broad.mit.edu	37	12	133428210	133428210	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ETNK1	55500	broad.mit.edu	37	12	22778128	22778128	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
C12orf11	55726	broad.mit.edu	37	12	27067466	27067466	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
KLHDC5	57542	broad.mit.edu	37	12	27933977	27933977	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29757224	29757224	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
DENND5B	160518	broad.mit.edu	37	12	31613259	31613259	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDZRN4	29951	broad.mit.edu	37	12	41967407	41967407	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRICKLE1	144165	broad.mit.edu	37	12	42854114	42854114	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANO6	196527	broad.mit.edu	37	12	45782045	45782045	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TROAP	10024	broad.mit.edu	37	12	49721057	49721057	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPATS2	65244	broad.mit.edu	37	12	49890687	49890687	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPATS2	65244	broad.mit.edu	37	12	49918549	49918549	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMPRSS12	283471	broad.mit.edu	37	12	51279160	51279160	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
DAZAP2	9802	broad.mit.edu	37	12	51634204	51634204	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MFSD5	84975	broad.mit.edu	37	12	53647277	53647277	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ESPL1	9700	broad.mit.edu	37	12	53677897	53677897	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC77	84318	broad.mit.edu	37	12	538021	538021	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
HOXC6	3223	broad.mit.edu	37	12	54423560	54423560	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
DGKA	1606	broad.mit.edu	37	12	56334172	56334172	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ESYT1	23344	broad.mit.edu	37	12	56536448	56536448	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TIMELESS	8914	broad.mit.edu	37	12	56816695	56816695	+	Missense_Mutation	SNP	A	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYO1A	4640	broad.mit.edu	37	12	57436895	57436895	+	Silent	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MBD6	114785	broad.mit.edu	37	12	57920498	57920498	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
OS9	10956	broad.mit.edu	37	12	58114292	58114292	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
NCAPD2	9918	broad.mit.edu	37	12	6626188	6626188	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
NCAPD2	9918	broad.mit.edu	37	12	6626830	6626830	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF384	171017	broad.mit.edu	37	12	6777233	6777233	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAP1B	5908	broad.mit.edu	37	12	69044231	69044231	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
NUP107	57122	broad.mit.edu	37	12	69126474	69126474	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
BEST3	144453	broad.mit.edu	37	12	70088210	70088210	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNC2	3747	broad.mit.edu	37	12	75437006	75437006	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CD163L1	283316	broad.mit.edu	37	12	7559389	7559389	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRRIQ1	84125	broad.mit.edu	37	12	85547824	85547824	+	Silent	SNP	T	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
DUSP6	1848	broad.mit.edu	37	12	89743278	89743278	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP2B1	490	broad.mit.edu	37	12	90005096	90005096	+	Silent	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMCC3	57458	broad.mit.edu	37	12	94965382	94965382	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMTC4	84899	broad.mit.edu	37	13	101278119	101278119	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL4A2	1284	broad.mit.edu	37	13	111077333	111077333	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
C13orf16	121793	broad.mit.edu	37	13	111973258	111973258	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PSPC1	55269	broad.mit.edu	37	13	20283725	20283725	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SACS	26278	broad.mit.edu	37	13	23904719	23904719	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SACS	26278	broad.mit.edu	37	13	23904867	23904867	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SACS	26278	broad.mit.edu	37	13	23905173	23905173	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
USP12	219333	broad.mit.edu	37	13	27645266	27645266	+	Missense_Mutation	SNP	T	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCNA1	8900	broad.mit.edu	37	13	37011849	37011849	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC70	83446	broad.mit.edu	37	13	52439716	52439716	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
DYNC1H1	1778	broad.mit.edu	37	14	102514870	102514870	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
KLC1	3831	broad.mit.edu	37	14	104121150	104121150	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPGRIP1	57096	broad.mit.edu	37	14	21780010	21780010	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPGRIP1	57096	broad.mit.edu	37	14	21780081	21780081	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPGRIP1	57096	broad.mit.edu	37	14	21780123	21780123	+	Silent	SNP	G	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBXO33	254170	broad.mit.edu	37	14	39868857	39868857	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM179B	23116	broad.mit.edu	37	14	45433564	45433564	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM179B	23116	broad.mit.edu	37	14	45542646	45542646	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMX1	81542	broad.mit.edu	37	14	51707163	51707163	+	Splice_Site	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZFP36L1	677	broad.mit.edu	37	14	69256711	69256711	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
YLPM1	56252	broad.mit.edu	37	14	75231008	75231008	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
C14orf174	161394	broad.mit.edu	37	14	77846794	77846794	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTPN21	11099	broad.mit.edu	37	14	88946469	88946469	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TDP1	55775	broad.mit.edu	37	14	90429474	90429474	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CATSPERB	79820	broad.mit.edu	37	14	92139220	92139220	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PAPOLA	10914	broad.mit.edu	37	14	97003330	97003330	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
BUB1B	701	broad.mit.edu	37	15	40501871	40501871	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
C15orf52	388115	broad.mit.edu	37	15	40633137	40633137	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAPKBP1	23005	broad.mit.edu	37	15	42107900	42107900	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
EHD4	30844	broad.mit.edu	37	15	42193072	42193072	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDAN1	146059	broad.mit.edu	37	15	43022925	43022925	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
LCMT2	9836	broad.mit.edu	37	15	43622020	43622020	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GATM	2628	broad.mit.edu	37	15	45654374	45654374	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC27A2	11001	broad.mit.edu	37	15	50518226	50518226	+	Missense_Mutation	SNP	A	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYO5C	55930	broad.mit.edu	37	15	52553307	52553307	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RNF111	54778	broad.mit.edu	37	15	59344515	59344515	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
HERC1	8925	broad.mit.edu	37	15	63984612	63984612	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RASL12	51285	broad.mit.edu	37	15	65347506	65347506	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FEM1B	10116	broad.mit.edu	37	15	68582398	68582398	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ITGA11	22801	broad.mit.edu	37	15	68600001	68600001	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
THAP10	56906	broad.mit.edu	37	15	71174897	71174897	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PML	5371	broad.mit.edu	37	15	74336969	74336969	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FANCI	55215	broad.mit.edu	37	15	89834895	89834895	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
C15orf42	90381	broad.mit.edu	37	15	90161397	90161397	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
AP3S2	10239	broad.mit.edu	37	15	90431850	90431850	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHD2	1106	broad.mit.edu	37	15	93558043	93558043	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHD2	1106	broad.mit.edu	37	15	93558052	93558052	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAPK8IP3	23162	broad.mit.edu	37	16	1797074	1797074	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ITPRIPL2	162073	broad.mit.edu	37	16	19126049	19126049	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TAOK2	9344	broad.mit.edu	37	16	29998037	29998037	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF689	115509	broad.mit.edu	37	16	30620909	30620909	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SRCAP	10847	broad.mit.edu	37	16	30735080	30735080	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
AXIN1	8312	broad.mit.edu	37	16	339566	339566	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR2C1	4993	broad.mit.edu	37	16	3406140	3406140	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CREBBP	1387	broad.mit.edu	37	16	3807965	3807965	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCC12	94160	broad.mit.edu	37	16	48177901	48177901	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADCY7	113	broad.mit.edu	37	16	50339495	50339495	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADCY7	113	broad.mit.edu	37	16	50339739	50339739	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
BRD7	29117	broad.mit.edu	37	16	50383964	50383964	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRSS54	221191	broad.mit.edu	37	16	58314274	58314274	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RRAD	6236	broad.mit.edu	37	16	66957559	66957559	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CES2	8824	broad.mit.edu	37	16	66976646	66976646	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RLTPR	146206	broad.mit.edu	37	16	67683380	67683380	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TSNAXIP1	55815	broad.mit.edu	37	16	67859121	67859121	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC12A4	6560	broad.mit.edu	37	16	67985184	67985184	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
HP	3240	broad.mit.edu	37	16	72094456	72094456	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
HPR	3250	broad.mit.edu	37	16	72108235	72108235	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADAMTS18	170692	broad.mit.edu	37	16	77325188	77325188	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZCCHC14	23174	broad.mit.edu	37	16	87445991	87445991	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZCCHC14	23174	broad.mit.edu	37	16	87446150	87446150	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYO1C	4641	broad.mit.edu	37	17	1371362	1371362	+	Missense_Mutation	SNP	T	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRPF8	10594	broad.mit.edu	37	17	1576684	1576684	+	Silent	SNP	G	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRPF8	10594	broad.mit.edu	37	17	1576731	1576731	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
NCOR1	9611	broad.mit.edu	37	17	16001781	16001781	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRRC48	83450	broad.mit.edu	37	17	17891266	17891266	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
B9D1	27077	broad.mit.edu	37	17	19251136	19251136	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0664	23277	broad.mit.edu	37	17	2597243	2597243	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FOXN1	8456	broad.mit.edu	37	17	26856166	26856166	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
NEK8	284086	broad.mit.edu	37	17	27068520	27068520	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TIAF1	9220	broad.mit.edu	37	17	27401192	27401192	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CORO6	84940	broad.mit.edu	37	17	27946710	27946710	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TBC1D29	26083	broad.mit.edu	37	17	28887196	28887196	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCL15	6359	broad.mit.edu	37	17	34325917	34325917	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ERBB2	2064	broad.mit.edu	37	17	37868208	37868208	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CASC3	22794	broad.mit.edu	37	17	38320174	38320174	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP2A3	489	broad.mit.edu	37	17	3856676	3856676	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
KRT34	3885	broad.mit.edu	37	17	39538574	39538574	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACLY	47	broad.mit.edu	37	17	40070073	40070073	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANKFY1	51479	broad.mit.edu	37	17	4086695	4086695	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GRN	2896	broad.mit.edu	37	17	42429721	42429721	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLCD3	113026	broad.mit.edu	37	17	43196285	43196285	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GGT6	124975	broad.mit.edu	37	17	4462916	4462916	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
NFE2L1	4779	broad.mit.edu	37	17	46128694	46128694	+	Missense_Mutation	SNP	A	G	G	rs117666459	by1000genomes	TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SAMD14	201191	broad.mit.edu	37	17	48191613	48191613	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
XYLT2	64132	broad.mit.edu	37	17	48434547	48434547	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRRC59	55379	broad.mit.edu	37	17	48460409	48460409	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF594	84622	broad.mit.edu	37	17	5086687	5086687	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
NLRP1	22861	broad.mit.edu	37	17	5462822	5462822	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAD51C	5889	broad.mit.edu	37	17	56809868	56809868	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
HELZ	9931	broad.mit.edu	37	17	65141898	65141898	+	Silent	SNP	T	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC13A5	284111	broad.mit.edu	37	17	6610016	6610016	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCA6	23460	broad.mit.edu	37	17	67075194	67075194	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
BCL6B	255877	broad.mit.edu	37	17	6930283	6930283	+	Silent	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
C17orf81	23587	broad.mit.edu	37	17	7160258	7160258	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPS2	2874	broad.mit.edu	37	17	7217447	7217447	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPS2	2874	broad.mit.edu	37	17	7217707	7217707	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAI2	64446	broad.mit.edu	37	17	72301563	72301563	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACAP1	9744	broad.mit.edu	37	17	7250445	7250445	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GRIN2C	2905	broad.mit.edu	37	17	72842905	72842905	+	Missense_Mutation	SNP	T	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
OTOP2	92736	broad.mit.edu	37	17	72929508	72929508	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ICT1	3396	broad.mit.edu	37	17	73017052	73017052	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
UNC13D	201294	broad.mit.edu	37	17	73839336	73839336	+	Silent	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
UBE2O	63893	broad.mit.edu	37	17	74387282	74387282	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577556	7577556	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7578275	7578275	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
EFNB3	1949	broad.mit.edu	37	17	7612706	7612706	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PIK3R5	23533	broad.mit.edu	37	17	8791859	8791859	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
KATNAL2	83473	broad.mit.edu	37	18	44626625	44626625	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYO5B	4645	broad.mit.edu	37	18	47428979	47428980	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50977029	50977029	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MBD2	8932	broad.mit.edu	37	18	51731413	51731413	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPB41L3	23136	broad.mit.edu	37	18	5397338	5397338	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CD226	10666	broad.mit.edu	37	18	67562996	67562996	+	Missense_Mutation	SNP	T	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RTTN	25914	broad.mit.edu	37	18	67871418	67871418	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CTDP1	9150	broad.mit.edu	37	18	77474710	77474710	+	Missense_Mutation	SNP	A	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
KEAP1	9817	broad.mit.edu	37	19	10610637	10610637	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF700	90592	broad.mit.edu	37	19	12060204	12060204	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
BRD4	23476	broad.mit.edu	37	19	15367816	15367816	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHERP	10523	broad.mit.edu	37	19	16633881	16633881	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHERP	10523	broad.mit.edu	37	19	16634026	16634026	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHERP	10523	broad.mit.edu	37	19	16640540	16640540	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYO9B	4650	broad.mit.edu	37	19	17213295	17213295	+	Silent	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABHD8	79575	broad.mit.edu	37	19	17405304	17405304	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANO8	57719	broad.mit.edu	37	19	17440786	17440786	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDE4C	5143	broad.mit.edu	37	19	18321950	18321950	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
UPF1	5976	broad.mit.edu	37	19	18963840	18963840	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SFRS14	10147	broad.mit.edu	37	19	19135806	19135806	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SF4	57794	broad.mit.edu	37	19	19431303	19431303	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GATAD2A	54815	broad.mit.edu	37	19	19612021	19612021	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF555	148254	broad.mit.edu	37	19	2853251	2853251	+	Nonsense_Mutation	SNP	T	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TLE6	79816	broad.mit.edu	37	19	2987903	2987903	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GNA15	2769	broad.mit.edu	37	19	3157790	3157790	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0355	9710	broad.mit.edu	37	19	34818939	34818939	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
C19orf28	126321	broad.mit.edu	37	19	3551099	3551099	+	Missense_Mutation	SNP	T	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
LSR	51599	broad.mit.edu	37	19	35758034	35758034	+	Silent	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
WDR62	284403	broad.mit.edu	37	19	36591653	36591653	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZFP82	284406	broad.mit.edu	37	19	36884578	36884578	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF829	374899	broad.mit.edu	37	19	37382767	37382767	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF527	84503	broad.mit.edu	37	19	37880276	37880276	+	Missense_Mutation	SNP	T	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF607	84775	broad.mit.edu	37	19	38190458	38190458	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
EEF2	1938	broad.mit.edu	37	19	3984133	3984133	+	Splice_Site	SNP	C	G	G	rs113603517		TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FCGBP	8857	broad.mit.edu	37	19	40408603	40408603	+	Silent	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PSMC4	5704	broad.mit.edu	37	19	40480725	40480725	+	Silent	SNP	T	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
BCKDHA	593	broad.mit.edu	37	19	41884361	41884361	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CEACAM5	1048	broad.mit.edu	37	19	42213827	42213827	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GSK3A	2931	broad.mit.edu	37	19	42744116	42744116	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ERCC2	2068	broad.mit.edu	37	19	45873455	45873455	+	Missense_Mutation	SNP	T	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPP1R13L	10848	broad.mit.edu	37	19	45899596	45899596	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM83E	54854	broad.mit.edu	37	19	49116416	49116416	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPP1R15A	23645	broad.mit.edu	37	19	49377076	49377076	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GYS1	2997	broad.mit.edu	37	19	49481249	49481249	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
HRC	3270	broad.mit.edu	37	19	49658329	49658329	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF320	162967	broad.mit.edu	37	19	53383882	53383882	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF816A	125893	broad.mit.edu	37	19	53454109	53454109	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF160	90338	broad.mit.edu	37	19	53573363	53573363	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPS9	6203	broad.mit.edu	37	19	54705081	54705081	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TNNI3	7137	broad.mit.edu	37	19	55667621	55667621	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF460	10794	broad.mit.edu	37	19	57802811	57802811	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZSCAN1	284312	broad.mit.edu	37	19	58565117	58565117	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC27A5	10998	broad.mit.edu	37	19	59011983	59011983	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACSBG2	81616	broad.mit.edu	37	19	6177390	6177390	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF557	79230	broad.mit.edu	37	19	7083113	7083113	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
XAB2	56949	broad.mit.edu	37	19	7684884	7684884	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBN3	84467	broad.mit.edu	37	19	8136970	8136970	+	Silent	SNP	G	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9071731	9071731	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9077704	9077704	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FRRS1	391059	broad.mit.edu	37	1	100212977	100212977	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FNDC7	163479	broad.mit.edu	37	1	109276098	109276098	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CSF1	1435	broad.mit.edu	37	1	110466437	110466437	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RBM15	64783	broad.mit.edu	37	1	110884629	110884629	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SRM	6723	broad.mit.edu	37	1	11115915	11115915	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
DENND2D	79961	broad.mit.edu	37	1	111730906	111730906	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
WDR77	79084	broad.mit.edu	37	1	111983905	111983905	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MOV10	4343	broad.mit.edu	37	1	113217604	113217604	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MOV10	4343	broad.mit.edu	37	1	113234326	113234326	+	Silent	SNP	G	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRIG2	9860	broad.mit.edu	37	1	113657463	113657463	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
OLFML3	56944	broad.mit.edu	37	1	114524373	114524373	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRAMEF6	440561	broad.mit.edu	37	1	13001237	13001237	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MTMR11	10903	broad.mit.edu	37	1	149902269	149902269	+	Silent	SNP	G	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
APH1A	51107	broad.mit.edu	37	1	150238976	150238976	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
APH1A	51107	broad.mit.edu	37	1	150240466	150240466	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152281379	152281379	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152327225	152327225	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
KPRP	448834	broad.mit.edu	37	1	152732377	152732377	+	Missense_Mutation	SNP	T	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
NUP210L	91181	broad.mit.edu	37	1	154000004	154000004	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
THBS3	7059	broad.mit.edu	37	1	155177629	155177629	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RIT1	6016	broad.mit.edu	37	1	155880497	155880497	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SEMA4A	64218	broad.mit.edu	37	1	156127890	156127890	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGEF11	9826	broad.mit.edu	37	1	156918212	156918212	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158641938	158641938	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR6N2	81442	broad.mit.edu	37	1	158747226	158747226	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
POGK	57645	broad.mit.edu	37	1	166818747	166818747	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADCY10	55811	broad.mit.edu	37	1	167852770	167852770	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
F5	2153	broad.mit.edu	37	1	169494148	169494148	+	Splice_Site	SNP	T	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CROCC	9696	broad.mit.edu	37	1	17249254	17249254	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZBTB37	84614	broad.mit.edu	37	1	173839578	173839578	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
DHX9	1660	broad.mit.edu	37	1	182822501	182822501	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SMG7	9887	broad.mit.edu	37	1	183518386	183518386	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186044020	186044020	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
UBR4	23352	broad.mit.edu	37	1	19487565	19487565	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
AKR7L	246181	broad.mit.edu	37	1	19595155	19595155	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ASPM	259266	broad.mit.edu	37	1	197070599	197070599	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
IGFN1	91156	broad.mit.edu	37	1	201185733	201185733	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RNF186	54546	broad.mit.edu	37	1	20141360	20141360	+	Missense_Mutation	SNP	A	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
KDM5B	10765	broad.mit.edu	37	1	202718108	202718108	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CYB5R1	51706	broad.mit.edu	37	1	202935922	202935922	+	Silent	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
LAX1	54900	broad.mit.edu	37	1	203743331	203743331	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
REN	5972	broad.mit.edu	37	1	204129688	204129688	+	Silent	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PFKFB2	5208	broad.mit.edu	37	1	207228122	207228122	+	Silent	SNP	T	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CD55	1604	broad.mit.edu	37	1	207495889	207495889	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CR1	1378	broad.mit.edu	37	1	207785142	207785142	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
C1orf107	27042	broad.mit.edu	37	1	210010531	210010531	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
LPGAT1	9926	broad.mit.edu	37	1	211966441	211966441	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
NSL1	25936	broad.mit.edu	37	1	212957760	212957760	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FLVCR1	28982	broad.mit.edu	37	1	213032136	213032136	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPS6KC1	26750	broad.mit.edu	37	1	213415370	213415370	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TAF1A	9015	broad.mit.edu	37	1	222743964	222743964	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAH14	127602	broad.mit.edu	37	1	225147899	225147899	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228434453	228434453	+	Missense_Mutation	SNP	T	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPHA8	2046	broad.mit.edu	37	1	22924702	22924702	+	Silent	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
URB2	9816	broad.mit.edu	37	1	229771854	229771854	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
URB2	9816	broad.mit.edu	37	1	229772944	229772944	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
URB2	9816	broad.mit.edu	37	1	229773668	229773668	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
COG2	22796	broad.mit.edu	37	1	230819378	230819378	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TCEA3	6920	broad.mit.edu	37	1	23713897	23713897	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
E2F2	1870	broad.mit.edu	37	1	23848342	23848342	+	Missense_Mutation	SNP	T	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240341299	240341299	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
EXO1	9156	broad.mit.edu	37	1	242048771	242048771	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADSS	159	broad.mit.edu	37	1	244614999	244614999	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GRHL3	57822	broad.mit.edu	37	1	24661179	24661179	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR2G2	81470	broad.mit.edu	37	1	247752506	247752506	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPN2	54707	broad.mit.edu	37	1	27216404	27216404	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYTL1	84958	broad.mit.edu	37	1	27675622	27675622	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FCN3	8547	broad.mit.edu	37	1	27695779	27695779	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SDC3	9672	broad.mit.edu	37	1	31346158	31346158	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RBBP4	5928	broad.mit.edu	37	1	33138430	33138430	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRDM16	63976	broad.mit.edu	37	1	3319489	3319489	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
C1orf216	127703	broad.mit.edu	37	1	36181308	36181308	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GRIK3	2899	broad.mit.edu	37	1	37499707	37499707	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZC3H12A	80149	broad.mit.edu	37	1	37947425	37947425	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPHA10	284656	broad.mit.edu	37	1	38197174	38197174	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39797480	39797480	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39799895	39799895	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39800966	39800966	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0754	643314	broad.mit.edu	37	1	39876601	39876601	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC30	728621	broad.mit.edu	37	1	43042700	43042700	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
IPO13	9670	broad.mit.edu	37	1	44424218	44424218	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ERI3	79033	broad.mit.edu	37	1	44785309	44785309	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLK3	1263	broad.mit.edu	37	1	45269324	45269324	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZSWIM5	57643	broad.mit.edu	37	1	45484612	45484612	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
AKR1A1	10327	broad.mit.edu	37	1	46034629	46034629	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
DMBX1	127343	broad.mit.edu	37	1	46976269	46976269	+	Missense_Mutation	SNP	T	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYSM1	114803	broad.mit.edu	37	1	59142623	59142623	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHD5	26038	broad.mit.edu	37	1	6173059	6173059	+	Splice_Site	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
DOCK7	85440	broad.mit.edu	37	1	63024891	63024891	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANGPTL3	27329	broad.mit.edu	37	1	63066796	63066796	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZBTB48	3104	broad.mit.edu	37	1	6649195	6649195	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MIER1	57708	broad.mit.edu	37	1	67411832	67411833	+	Splice_Site	DNP	GG	TT	TT			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CAMTA1	23261	broad.mit.edu	37	1	6885189	6885189	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANKRD13C	81573	broad.mit.edu	37	1	70728465	70728465	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FUBP1	8880	broad.mit.edu	37	1	78430866	78430866	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNASE2B	58511	broad.mit.edu	37	1	84867740	84867740	+	Silent	SNP	A	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86426951	86426951	+	Missense_Mutation	SNP	A	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF644	84146	broad.mit.edu	37	1	91406420	91406420	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MTF2	22823	broad.mit.edu	37	1	93580289	93580289	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CNN3	1266	broad.mit.edu	37	1	95363303	95363303	+	Missense_Mutation	SNP	A	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CNN3	1266	broad.mit.edu	37	1	95363318	95363318	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
LPPR5	163404	broad.mit.edu	37	1	99387500	99387500	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
NOP56	10528	broad.mit.edu	37	20	2636004	2636004	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TPX2	22974	broad.mit.edu	37	20	30385318	30385318	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FOXS1	2307	broad.mit.edu	37	20	30433105	30433105	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNMT3B	1789	broad.mit.edu	37	20	31376814	31376814	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RALY	22913	broad.mit.edu	37	20	32659982	32659982	+	Missense_Mutation	SNP	G	C	C	rs114080584	by1000genomes	TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RALY	22913	broad.mit.edu	37	20	32664519	32664519	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPB41L1	2036	broad.mit.edu	37	20	34782172	34782172	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
DHX35	60625	broad.mit.edu	37	20	37621005	37621005	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHD6	84181	broad.mit.edu	37	20	40065975	40065975	+	Splice_Site	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SGK2	10110	broad.mit.edu	37	20	42196637	42196637	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SERINC3	10955	broad.mit.edu	37	20	43141486	43141486	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PKIG	11142	broad.mit.edu	37	20	43243233	43243233	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RIMS4	140730	broad.mit.edu	37	20	43399923	43399923	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZMYND8	23613	broad.mit.edu	37	20	45923508	45923508	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CSE1L	1434	broad.mit.edu	37	20	47704592	47704592	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC9A8	23315	broad.mit.edu	37	20	48503324	48503324	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP9A	10079	broad.mit.edu	37	20	50255994	50255994	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TSHZ2	128553	broad.mit.edu	37	20	51871960	51871960	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GNAS	2778	broad.mit.edu	37	20	57480468	57480468	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL9A3	1299	broad.mit.edu	37	20	61472055	61472055	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRIC285	85441	broad.mit.edu	37	20	62195447	62195447	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYT1	4661	broad.mit.edu	37	20	62838960	62838960	+	Silent	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8113380	8113380	+	Missense_Mutation	SNP	T	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SFRS15	57466	broad.mit.edu	37	21	33044531	33044531	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ITSN1	6453	broad.mit.edu	37	21	35153820	35153820	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MORC3	23515	broad.mit.edu	37	21	37741509	37741509	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTC3	7267	broad.mit.edu	37	21	38519889	38519889	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTC3	7267	broad.mit.edu	37	21	38567984	38567984	+	Silent	SNP	C	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ERG	2078	broad.mit.edu	37	21	39755527	39755527	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
BRWD1	54014	broad.mit.edu	37	21	40559037	40559037	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCNT	5116	broad.mit.edu	37	21	47851851	47851851	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
BCL2L13	23786	broad.mit.edu	37	22	18209590	18209590	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAPK1	5594	broad.mit.edu	37	22	22161970	22161970	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF280A	129025	broad.mit.edu	37	22	22868615	22868615	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CRYBA4	1413	broad.mit.edu	37	22	27019252	27019252	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYH9	4627	broad.mit.edu	37	22	36681274	36681274	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TCF20	6942	broad.mit.edu	37	22	42609885	42609885	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TCF20	6942	broad.mit.edu	37	22	42610021	42610021	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MCAT	27349	broad.mit.edu	37	22	43538972	43538972	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SCUBE1	80274	broad.mit.edu	37	22	43634897	43634897	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CELSR1	9620	broad.mit.edu	37	22	46932099	46932099	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MIOX	55586	broad.mit.edu	37	22	50928201	50928201	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPL31	6160	broad.mit.edu	37	2	101622467	101622467	+	Missense_Mutation	SNP	G	A	A	rs11551487		TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPL31	6160	broad.mit.edu	37	2	101622473	101622473	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPL31	6160	broad.mit.edu	37	2	101622476	101622476	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
IL18RAP	8807	broad.mit.edu	37	2	103068411	103068411	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
IL18RAP	8807	broad.mit.edu	37	2	103068499	103068499	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC9A2	6549	broad.mit.edu	37	2	103236427	103236427	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GCC2	9648	broad.mit.edu	37	2	109111783	109111783	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RANBP2	5903	broad.mit.edu	37	2	109398587	109398587	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACOXL	55289	broad.mit.edu	37	2	111691109	111691109	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANAPC1	64682	broad.mit.edu	37	2	112592358	112592358	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MERTK	10461	broad.mit.edu	37	2	112733015	112733015	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MERTK	10461	broad.mit.edu	37	2	112779055	112779055	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC20A1	6574	broad.mit.edu	37	2	113417182	113417182	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PSD4	23550	broad.mit.edu	37	2	113941019	113941019	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GREB1	9687	broad.mit.edu	37	2	11765299	11765299	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GREB1	9687	broad.mit.edu	37	2	11774306	11774306	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDP1	200373	broad.mit.edu	37	2	120413990	120413990	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTPN4	5775	broad.mit.edu	37	2	120709702	120709702	+	Missense_Mutation	SNP	A	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SAP130	79595	broad.mit.edu	37	2	128750795	128750795	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
R3HDM1	23518	broad.mit.edu	37	2	136389328	136389328	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
DARS	1615	broad.mit.edu	37	2	136682034	136682034	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
NMI	9111	broad.mit.edu	37	2	152127234	152127234	+	Silent	SNP	T	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RIF1	55183	broad.mit.edu	37	2	152293454	152293454	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNH7	90134	broad.mit.edu	37	2	163236516	163236516	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168105892	168105892	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168106305	168106305	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHN1	1123	broad.mit.edu	37	2	175742603	175742603	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAD51AP2	729475	broad.mit.edu	37	2	17699508	17699508	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
VSNL1	7447	broad.mit.edu	37	2	17773477	17773477	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179399128	179399128	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179401935	179401935	+	Missense_Mutation	SNP	C	T	T	rs72648278		TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179464127	179464127	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANKAR	150709	broad.mit.edu	37	2	190559783	190559783	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SDPR	8436	broad.mit.edu	37	2	192700708	192700708	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SDPR	8436	broad.mit.edu	37	2	192700978	192700978	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SDPR	8436	broad.mit.edu	37	2	192701111	192701111	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PGAP1	80055	broad.mit.edu	37	2	197791211	197791211	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MOBKL3	25843	broad.mit.edu	37	2	198380840	198380840	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
C2orf69	205327	broad.mit.edu	37	2	200790122	200790122	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
NDUFB3	4709	broad.mit.edu	37	2	201950223	201950223	+	Missense_Mutation	SNP	T	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAPH1	65059	broad.mit.edu	37	2	204324748	204324748	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PUM2	23369	broad.mit.edu	37	2	20451400	20451400	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLEKHM3	389072	broad.mit.edu	37	2	208795688	208795688	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLCD4	84812	broad.mit.edu	37	2	219498429	219498429	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RNF25	64320	broad.mit.edu	37	2	219528996	219528996	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNER	92737	broad.mit.edu	37	2	230341868	230341868	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
NEU2	4759	broad.mit.edu	37	2	233899630	233899630	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238266512	238266512	+	Missense_Mutation	SNP	T	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
HDAC4	9759	broad.mit.edu	37	2	240111708	240111708	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATG4B	23192	broad.mit.edu	37	2	242598539	242598539	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIF3C	3797	broad.mit.edu	37	2	26204414	26204414	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GTF3C2	2976	broad.mit.edu	37	2	27566319	27566319	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPM1G	5496	broad.mit.edu	37	2	27609992	27609992	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
XDH	7498	broad.mit.edu	37	2	31572632	31572632	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPAST	6683	broad.mit.edu	37	2	32289086	32289086	+	Silent	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC30A6	55676	broad.mit.edu	37	2	32419049	32419049	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
BIRC6	57448	broad.mit.edu	37	2	32740283	32740283	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RASGRP3	25780	broad.mit.edu	37	2	33745672	33745672	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GALM	130589	broad.mit.edu	37	2	38893363	38893363	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
DHX57	90957	broad.mit.edu	37	2	39042771	39042771	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
THADA	63892	broad.mit.edu	37	2	43458299	43458299	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
THADA	63892	broad.mit.edu	37	2	43801742	43801742	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTC7A	57217	broad.mit.edu	37	2	47249004	47249004	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
XPO1	7514	broad.mit.edu	37	2	61710158	61710158	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PELI1	57162	broad.mit.edu	37	2	64335432	64335432	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
NAGK	55577	broad.mit.edu	37	2	71298938	71298938	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC142	84865	broad.mit.edu	37	2	74708006	74708006	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRRTM1	347730	broad.mit.edu	37	2	80529640	80529640	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
C2orf89	129293	broad.mit.edu	37	2	85097505	85097505	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GGCX	2677	broad.mit.edu	37	2	85777223	85777223	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
USP39	10713	broad.mit.edu	37	2	85857963	85857963	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CD8A	925	broad.mit.edu	37	2	87017667	87017667	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF514	84874	broad.mit.edu	37	2	95815496	95815496	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ITPRIPL1	150771	broad.mit.edu	37	2	96992597	96992597	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARID5A	10865	broad.mit.edu	37	2	97217382	97217382	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FER1L5	90342	broad.mit.edu	37	2	97365766	97365766	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
COX5B	1329	broad.mit.edu	37	2	98263594	98263594	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR128	84873	broad.mit.edu	37	3	100354655	100354655	+	Silent	SNP	A	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RG9MTD1	54931	broad.mit.edu	37	3	101284754	101284754	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CD47	961	broad.mit.edu	37	3	107778373	107778373	+	Missense_Mutation	SNP	T	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SIDT1	54847	broad.mit.edu	37	3	113321989	113321989	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA2018	205717	broad.mit.edu	37	3	113393710	113393710	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
POLQ	10721	broad.mit.edu	37	3	121207358	121207358	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GOLGB1	2804	broad.mit.edu	37	3	121414092	121414092	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GOLGB1	2804	broad.mit.edu	37	3	121414425	121414425	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GOLGB1	2804	broad.mit.edu	37	3	121416258	121416258	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GOLGB1	2804	broad.mit.edu	37	3	121416388	121416388	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GOLGB1	2804	broad.mit.edu	37	3	121416969	121416969	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GOLGB1	2804	broad.mit.edu	37	3	121417118	121417118	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
KPNA1	3836	broad.mit.edu	37	3	122168479	122168479	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124165699	124165699	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MCM2	4171	broad.mit.edu	37	3	127327705	127327705	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMEM40	55287	broad.mit.edu	37	3	12783971	12783971	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLXND1	23129	broad.mit.edu	37	3	129288723	129288723	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAJC13	23317	broad.mit.edu	37	3	132185190	132185190	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPHB1	2047	broad.mit.edu	37	3	134967280	134967280	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MSL2	55167	broad.mit.edu	37	3	135913931	135913931	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ESYT3	83850	broad.mit.edu	37	3	138187010	138187010	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATR	545	broad.mit.edu	37	3	142184050	142184050	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
C3orf58	205428	broad.mit.edu	37	3	143691397	143691397	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLOD2	5352	broad.mit.edu	37	3	145804623	145804623	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
P2RY13	53829	broad.mit.edu	37	3	151046193	151046193	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC33A1	9197	broad.mit.edu	37	3	155571325	155571325	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
IFT80	57560	broad.mit.edu	37	3	159995413	159995413	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
NMD3	51068	broad.mit.edu	37	3	160958933	160958933	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FNDC3B	64778	broad.mit.edu	37	3	172028660	172028660	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCC5	10057	broad.mit.edu	37	3	183700753	183700753	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ECE2	9718	broad.mit.edu	37	3	184002817	184002817	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TNK2	10188	broad.mit.edu	37	3	195615316	195615316	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBXL2	25827	broad.mit.edu	37	3	33400807	33400807	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GORASP1	64689	broad.mit.edu	37	3	39139937	39139937	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC13	152206	broad.mit.edu	37	3	42777313	42777313	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDCP1	64866	broad.mit.edu	37	3	45152268	45152268	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCR3	1232	broad.mit.edu	37	3	46307616	46307616	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
NBEAL2	23218	broad.mit.edu	37	3	47044731	47044731	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SETD2	29072	broad.mit.edu	37	3	47164187	47164187	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
STAB1	23166	broad.mit.edu	37	3	52538540	52538540	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RFT1	91869	broad.mit.edu	37	3	53159984	53159984	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FLNB	2317	broad.mit.edu	37	3	58109122	58109122	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CADPS	8618	broad.mit.edu	37	3	62423858	62423858	+	Missense_Mutation	SNP	T	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GXYLT2	727936	broad.mit.edu	37	3	73004392	73004393	+	Missense_Mutation	DNP	GA	CT	CT			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
OXTR	5021	broad.mit.edu	37	3	8809175	8809175	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
C3orf38	285237	broad.mit.edu	37	3	88205273	88205273	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
OGG1	4968	broad.mit.edu	37	3	9792844	9792844	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR5K3	403277	broad.mit.edu	37	3	98110249	98110249	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR15	2838	broad.mit.edu	37	3	98251707	98251707	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
IL17RC	84818	broad.mit.edu	37	3	9974537	9974537	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPP3CA	5530	broad.mit.edu	37	4	102117268	102117268	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
AIMP1	9255	broad.mit.edu	37	4	107249297	107249297	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ENPEP	2028	broad.mit.edu	37	4	111397820	111397820	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
NDST4	64579	broad.mit.edu	37	4	115858492	115858492	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRPC3	7222	broad.mit.edu	37	4	122853440	122853440	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
NAA15	80155	broad.mit.edu	37	4	140275244	140275244	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
NR3C2	4306	broad.mit.edu	37	4	149073701	149073701	+	Missense_Mutation	SNP	G	A	A	rs41511344		TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FGA	2243	broad.mit.edu	37	4	155507934	155507934	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
HMGB2	3148	broad.mit.edu	37	4	174254236	174254236	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDLIM3	27295	broad.mit.edu	37	4	186429463	186429463	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
WHSC1	7468	broad.mit.edu	37	4	1918678	1918678	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
HAUS3	79441	broad.mit.edu	37	4	2238119	2238119	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARAP2	116984	broad.mit.edu	37	4	36212232	36212232	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
UGDH	7358	broad.mit.edu	37	4	39506886	39506886	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
NSUN7	79730	broad.mit.edu	37	4	40763266	40763266	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMPRSS11F	389208	broad.mit.edu	37	4	68934364	68934364	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC96	257236	broad.mit.edu	37	4	7044095	7044095	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
G3BP2	9908	broad.mit.edu	37	4	76579204	76579204	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79199890	79199890	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79238534	79238534	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CPZ	8532	broad.mit.edu	37	4	8602948	8602948	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GAK	2580	broad.mit.edu	37	4	861130	861130	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTPN13	5783	broad.mit.edu	37	4	87691109	87691109	+	Silent	SNP	A	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
DSPP	1834	broad.mit.edu	37	4	88535250	88535250	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GIN1	54826	broad.mit.edu	37	5	102442447	102442447	+	Silent	SNP	T	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
C5orf48	389320	broad.mit.edu	37	5	125968328	125968328	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAD50	10111	broad.mit.edu	37	5	131895051	131895051	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CATSPER3	347732	broad.mit.edu	37	5	134332199	134332199	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
H2AFY	9555	broad.mit.edu	37	5	134705752	134705752	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYOT	9499	broad.mit.edu	37	5	137219160	137219160	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
KDM3B	51780	broad.mit.edu	37	5	137763715	137763715	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13841027	13841027	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHB8	56128	broad.mit.edu	37	5	140559208	140559208	+	Silent	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHB16	57717	broad.mit.edu	37	5	140563854	140563854	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHB10	56126	broad.mit.edu	37	5	140573268	140573268	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHGA5	56110	broad.mit.edu	37	5	140745294	140745294	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHGC5	56097	broad.mit.edu	37	5	140870243	140870243	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIO	7204	broad.mit.edu	37	5	14389431	14389431	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBXO38	81545	broad.mit.edu	37	5	147807414	147807414	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CSF1R	1436	broad.mit.edu	37	5	149449619	149449619	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM114A2	10827	broad.mit.edu	37	5	153407773	153407773	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADAM19	8728	broad.mit.edu	37	5	156932736	156932736	+	Silent	SNP	A	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SOX30	11063	broad.mit.edu	37	5	157078609	157078609	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CLINT1	9685	broad.mit.edu	37	5	157218935	157218935	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15928098	15928098	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GABRB2	2561	broad.mit.edu	37	5	160761889	160761889	+	Silent	SNP	G	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYO10	4651	broad.mit.edu	37	5	16781865	16781865	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PANK3	79646	broad.mit.edu	37	5	167993164	167993164	+	Silent	SNP	A	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDHR2	54825	broad.mit.edu	37	5	176005373	176005373	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MGAT4B	11282	broad.mit.edu	37	5	179229052	179229052	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MTMR12	54545	broad.mit.edu	37	5	32233926	32233926	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33891861	33891861	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTC23L	153657	broad.mit.edu	37	5	34867123	34867123	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RANBP3L	202151	broad.mit.edu	37	5	36265572	36265572	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTC33	23548	broad.mit.edu	37	5	40730373	40730373	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45462008	45462008	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
AP3B1	8546	broad.mit.edu	37	5	77406125	77406125	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MTX3	345778	broad.mit.edu	37	5	79284998	79284998	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR98	84059	broad.mit.edu	37	5	90052949	90052949	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM81B	153643	broad.mit.edu	37	5	94728542	94728542	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCSK1	5122	broad.mit.edu	37	5	95768692	95768692	+	Missense_Mutation	SNP	A	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SIM1	6492	broad.mit.edu	37	6	100841697	100841697	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYCP2L	221711	broad.mit.edu	37	6	10913109	10913109	+	Missense_Mutation	SNP	T	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRAF3IP2	10758	broad.mit.edu	37	6	111913025	111913025	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
C6orf174	387104	broad.mit.edu	37	6	127797109	127797109	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYB	4602	broad.mit.edu	37	6	135521495	135521495	+	Missense_Mutation	SNP	G	A	A	rs113182184	by1000genomes	TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDE7B	27115	broad.mit.edu	37	6	136502427	136502427	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR126	57211	broad.mit.edu	37	6	142691518	142691518	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPIL4	85313	broad.mit.edu	37	6	149856762	149856762	+	Missense_Mutation	SNP	T	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARID1B	57492	broad.mit.edu	37	6	157502230	157502230	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYNJ2	8871	broad.mit.edu	37	6	158499228	158499228	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
THBS2	7058	broad.mit.edu	37	6	169648940	169648940	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
NHLRC1	378884	broad.mit.edu	37	6	18122174	18122174	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
NHLRC1	378884	broad.mit.edu	37	6	18122786	18122786	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
BTN3A3	10384	broad.mit.edu	37	6	26446154	26446154	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
BTN2A1	11120	broad.mit.edu	37	6	26459743	26459743	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
BTN1A1	696	broad.mit.edu	37	6	26501556	26501556	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
HIST1H4I	8294	broad.mit.edu	37	6	27107327	27107327	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
HIST1H2AL	8332	broad.mit.edu	37	6	27833492	27833492	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF165	7718	broad.mit.edu	37	6	28056944	28056944	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIM10	10107	broad.mit.edu	37	6	30126201	30126201	+	Missense_Mutation	SNP	T	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MDC1	9656	broad.mit.edu	37	6	30681764	30681764	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CSNK2B	1460	broad.mit.edu	37	6	31635725	31635725	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
EGFL8	80864	broad.mit.edu	37	6	32134565	32134565	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPS18	6222	broad.mit.edu	37	6	33244172	33244172	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZBTB22	9278	broad.mit.edu	37	6	33283235	33283235	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZBTB22	9278	broad.mit.edu	37	6	33284430	33284430	+	Silent	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
DAXX	1616	broad.mit.edu	37	6	33287200	33287200	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CUTA	51596	broad.mit.edu	37	6	33385311	33385311	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SCUBE3	222663	broad.mit.edu	37	6	35213121	35213121	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRFN2	57497	broad.mit.edu	37	6	40400146	40400146	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
NCR2	9436	broad.mit.edu	37	6	41303625	41303625	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
NFKBIE	4794	broad.mit.edu	37	6	44227792	44227792	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TDRD6	221400	broad.mit.edu	37	6	46658620	46658620	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MEP1A	4224	broad.mit.edu	37	6	46794205	46794205	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51908451	51908451	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CAGE1	285782	broad.mit.edu	37	6	7373335	7373335	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
DSP	1832	broad.mit.edu	37	6	7580702	7580702	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
DSP	1832	broad.mit.edu	37	6	7581076	7581076	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TXNDC5	81567	broad.mit.edu	37	6	8064557	8064557	+	De_novo_Start_InFrame	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GJA10	84694	broad.mit.edu	37	6	90604653	90604653	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPHA7	2045	broad.mit.edu	37	6	94068097	94068097	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FHL5	9457	broad.mit.edu	37	6	97051647	97051647	+	Missense_Mutation	SNP	A	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100679890	100679890	+	Silent	SNP	T	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC26A4	5172	broad.mit.edu	37	7	107342406	107342406	+	Silent	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRRN3	54674	broad.mit.edu	37	7	110764893	110764893	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
DOCK4	9732	broad.mit.edu	37	7	111634279	111634279	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
C7orf60	154743	broad.mit.edu	37	7	112579712	112579712	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CTTNBP2	83992	broad.mit.edu	37	7	117400556	117400556	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ING3	54556	broad.mit.edu	37	7	120614801	120614801	+	Missense_Mutation	SNP	A	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121701184	121701184	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
NDUFA5	4698	broad.mit.edu	37	7	123197496	123197496	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SND1	27044	broad.mit.edu	37	7	127344995	127344995	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZC3HC1	51530	broad.mit.edu	37	7	129691140	129691140	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137075986	137075986	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPHA1	2041	broad.mit.edu	37	7	143095738	143095738	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CUL1	8454	broad.mit.edu	37	7	148427336	148427336	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GIMAP8	155038	broad.mit.edu	37	7	150164398	150164398	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
BZW2	28969	broad.mit.edu	37	7	16714045	16714045	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
C7orf46	340277	broad.mit.edu	37	7	23731113	23731113	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
LFNG	3955	broad.mit.edu	37	7	2565141	2565141	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TAX1BP1	8887	broad.mit.edu	37	7	27797748	27797748	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
BMPER	168667	broad.mit.edu	37	7	34125385	34125385	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TARP	445347	broad.mit.edu	37	7	38305062	38305062	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
NPC1L1	29881	broad.mit.edu	37	7	44579102	44579102	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TNS3	64759	broad.mit.edu	37	7	47467943	47467943	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SUN3	256979	broad.mit.edu	37	7	48046822	48046822	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF713	349075	broad.mit.edu	37	7	56007179	56007179	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PMS2	5395	broad.mit.edu	37	7	6027006	6027006	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CLDN4	1364	broad.mit.edu	37	7	73246019	73246019	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMEM130	222865	broad.mit.edu	37	7	98460916	98460916	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMEM74	157753	broad.mit.edu	37	8	109797208	109797208	+	Silent	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANXA13	312	broad.mit.edu	37	8	124693585	124693585	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
DLC1	10395	broad.mit.edu	37	8	12947971	12947971	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139629181	139629181	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CPSF1	29894	broad.mit.edu	37	8	145622704	145622704	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF7	7553	broad.mit.edu	37	8	146068042	146068042	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
C8orf33	65265	broad.mit.edu	37	8	146279413	146279413	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CLN8	2055	broad.mit.edu	37	8	1728467	1728467	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PSD3	23362	broad.mit.edu	37	8	18729854	18729854	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGEF10	9639	broad.mit.edu	37	8	1876813	1876813	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CSGALNACT1	55790	broad.mit.edu	37	8	19316071	19316071	+	Silent	SNP	G	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM160B2	64760	broad.mit.edu	37	8	21955290	21955290	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
REEP4	80346	broad.mit.edu	37	8	21997685	21997685	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
EGR3	1960	broad.mit.edu	37	8	22548114	22548114	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GTF2E2	2961	broad.mit.edu	37	8	30472223	30472223	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
DDHD2	23259	broad.mit.edu	37	8	38090714	38090714	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MCM4	4173	broad.mit.edu	37	8	48888324	48888324	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CHD7	55636	broad.mit.edu	37	8	61748694	61748694	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77618332	77618332	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MMP16	4325	broad.mit.edu	37	8	89179976	89179976	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
NBN	4683	broad.mit.edu	37	8	90955531	90955531	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ESRP1	54845	broad.mit.edu	37	8	95653664	95653664	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SNX30	401548	broad.mit.edu	37	9	115598511	115598511	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZFP37	7539	broad.mit.edu	37	9	115805331	115805331	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL27A1	85301	broad.mit.edu	37	9	117008161	117008161	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL27A1	85301	broad.mit.edu	37	9	117027210	117027210	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM125B	89853	broad.mit.edu	37	9	129157918	129157918	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RALGPS1	9649	broad.mit.edu	37	9	129958857	129958857	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
CRAT	1384	broad.mit.edu	37	9	131864290	131864290	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABL1	25	broad.mit.edu	37	9	133760298	133760298	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAPGEF1	2889	broad.mit.edu	37	9	134454941	134454941	+	Silent	SNP	C	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MED27	9442	broad.mit.edu	37	9	134952861	134952861	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TSC1	7248	broad.mit.edu	37	9	135781419	135781419	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FCN2	2220	broad.mit.edu	37	9	137777709	137777709	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FCN1	2219	broad.mit.edu	37	9	137804336	137804336	+	Silent	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
DOCK8	81704	broad.mit.edu	37	9	422091	422091	+	Silent	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
DOCK8	81704	broad.mit.edu	37	9	429848	429848	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM108B1	51104	broad.mit.edu	37	9	74489744	74489744	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RFK	55312	broad.mit.edu	37	9	79002362	79002362	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM22F	54754	broad.mit.edu	37	9	97082700	97082700	+	Silent	SNP	G	C	C			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
BTK	695	broad.mit.edu	37	X	100608277	100608277	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PAK3	5063	broad.mit.edu	37	X	110395674	110395674	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGAP6	395	broad.mit.edu	37	X	11272742	11272742	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
IL3RA	3563	broad.mit.edu	37	X	1475113	1475113	+	Splice_Site	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
TKTL1	8277	broad.mit.edu	37	X	153524334	153524334	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLXNA3	55558	broad.mit.edu	37	X	153697282	153697282	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAGEB10	139422	broad.mit.edu	37	X	27840056	27840056	+	Silent	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
MXRA5	25878	broad.mit.edu	37	X	3239350	3239350	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARAF	369	broad.mit.edu	37	X	47422403	47422403	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
GNL3L	54552	broad.mit.edu	37	X	54569458	54569458	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
LAS1L	81887	broad.mit.edu	37	X	64753613	64753613	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
RLIM	51132	broad.mit.edu	37	X	73811938	73811938	+	Silent	SNP	G	C	C	rs61754468		TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
DIAPH2	1730	broad.mit.edu	37	X	96136711	96136711	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
USP9Y	8287	broad.mit.edu	37	Y	14832567	14832567	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
LASS6	253782	broad.mit.edu	37	2	169571567	169571572	+	In_Frame_Del	DEL	ATATGT	-	-			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
SDPR	8436	broad.mit.edu	37	2	192701073	192701073	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
IMPG2	50939	broad.mit.edu	37	3	100964653	100964654	+	Frame_Shift_Ins	INS	-	A	A			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
KDM6A	7403	broad.mit.edu	37	X	44894229	44894232	+	Splice_Site	DEL	AAGT	-	-			TCGA-DK-A1A3-01	TCGA-DK-A1A3-01									Somatic	Phase_I	Capture				Illumina GAIIx
