Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ADARB2	105	broad.mit.edu	37	10	1405328	1405328	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA1217	56243	broad.mit.edu	37	10	24833013	24833013	+	Missense_Mutation	SNP	A	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR158	57512	broad.mit.edu	37	10	25886754	25886754	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPC1	80314	broad.mit.edu	37	10	32635714	32635714	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM21C	253725	broad.mit.edu	37	10	46250443	46250443	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANK3	288	broad.mit.edu	37	10	61830487	61830487	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF518A	9849	broad.mit.edu	37	10	97919969	97919969	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRPC6	7225	broad.mit.edu	37	11	101375138	101375138	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1155713	1155713	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
PVRL1	5818	broad.mit.edu	37	11	119548477	119548477	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGAP32	9743	broad.mit.edu	37	11	128839644	128839644	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC73	493860	broad.mit.edu	37	11	32624470	32624470	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
NUP160	23279	broad.mit.edu	37	11	47806511	47806511	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR4A47	403253	broad.mit.edu	37	11	48511051	48511051	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
FOLH1	2346	broad.mit.edu	37	11	49176030	49176030	+	Silent	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR4C6	219432	broad.mit.edu	37	11	55433450	55433450	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC43A3	29015	broad.mit.edu	37	11	57193532	57193532	+	Silent	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR4D6	219983	broad.mit.edu	37	11	59224919	59224919	+	Silent	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
C11orf85	283129	broad.mit.edu	37	11	64708119	64708119	+	Splice_Site	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
SUV420H1	51111	broad.mit.edu	37	11	67926623	67926623	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
FOLH1B	219595	broad.mit.edu	37	11	89424064	89424064	+	Silent	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
AMOTL1	154810	broad.mit.edu	37	11	94533316	94533316	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
BTBD11	121551	broad.mit.edu	37	12	108011968	108011968	+	Silent	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
UBE3B	89910	broad.mit.edu	37	12	109971290	109971290	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
CIT	11113	broad.mit.edu	37	12	120263155	120263155	+	Silent	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ERC1	23085	broad.mit.edu	37	12	1213916	1213916	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
VPS37B	79720	broad.mit.edu	37	12	123351840	123351840	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	130184379	130184379	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPRC5D	55507	broad.mit.edu	37	12	13103173	13103173	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ITPR2	3709	broad.mit.edu	37	12	26875357	26875357	+	Silent	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
FOXM1	2305	broad.mit.edu	37	12	2975580	2975580	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIF21A	55605	broad.mit.edu	37	12	39711890	39711890	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
KRT71	112802	broad.mit.edu	37	12	52940119	52940119	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR6C6	283365	broad.mit.edu	37	12	55688666	55688666	+	Silent	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAJC14	85406	broad.mit.edu	37	12	56188642	56188642	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
LGR5	8549	broad.mit.edu	37	12	71833917	71833917	+	Silent	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
CD163L1	283316	broad.mit.edu	37	12	7556186	7556186	+	Silent	SNP	A	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
NANOG	79923	broad.mit.edu	37	12	7945759	7945759	+	Missense_Mutation	SNP	T	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110829360	110829360	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
FLT3	2322	broad.mit.edu	37	13	28589746	28589746	+	Silent	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
BRCA2	675	broad.mit.edu	37	13	32914733	32914733	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC25A15	10166	broad.mit.edu	37	13	41379289	41379289	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
PIBF1	10464	broad.mit.edu	37	13	73590051	73590051	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ASPG	374569	broad.mit.edu	37	14	104570652	104570652	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPGRIP1	57096	broad.mit.edu	37	14	21762864	21762864	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
HECTD1	25831	broad.mit.edu	37	14	31614067	31614067	+	Silent	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
NID2	22795	broad.mit.edu	37	14	52535556	52535556	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0586	9786	broad.mit.edu	37	14	58949408	58949408	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
SIX4	51804	broad.mit.edu	37	14	61190738	61190738	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNH5	27133	broad.mit.edu	37	14	63269243	63269243	+	Silent	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64586261	64586261	+	Silent	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLEKHH1	57475	broad.mit.edu	37	14	68043123	68043123	+	Silent	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	79270112	79270112	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ASB2	51676	broad.mit.edu	37	14	94405833	94405833	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
TUBGCP5	114791	broad.mit.edu	37	15	22864348	22864348	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
TP53BP1	7158	broad.mit.edu	37	15	43783886	43783886	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
B2M	567	broad.mit.edu	37	15	45007713	45007713	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYO1E	4643	broad.mit.edu	37	15	59502740	59502740	+	Silent	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
C15orf59	388135	broad.mit.edu	37	15	74032895	74032895	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
PML	5371	broad.mit.edu	37	15	74290639	74290639	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTPN9	5780	broad.mit.edu	37	15	75798059	75798059	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
RASGRF1	5923	broad.mit.edu	37	15	79296180	79296180	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ALPK3	57538	broad.mit.edu	37	15	85401089	85401089	+	Silent	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYNM	23336	broad.mit.edu	37	15	99671728	99671728	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZC3H7A	29066	broad.mit.edu	37	16	11868313	11868313	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
IGFALS	3483	broad.mit.edu	37	16	1842159	1842159	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDILT	204474	broad.mit.edu	37	16	20410611	20410611	+	Silent	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACSM5	54988	broad.mit.edu	37	16	20430712	20430712	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRKCB	5579	broad.mit.edu	37	16	24202490	24202490	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
TAOK2	9344	broad.mit.edu	37	16	29999180	29999180	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPL	5493	broad.mit.edu	37	16	4945714	4945714	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ALG1	56052	broad.mit.edu	37	16	5129756	5129756	+	Silent	SNP	A	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC12A3	6559	broad.mit.edu	37	16	56906612	56906612	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
MMP15	4324	broad.mit.edu	37	16	58071406	58071406	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
NDRG4	65009	broad.mit.edu	37	16	58537754	58537754	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
TK2	7084	broad.mit.edu	37	16	66584022	66584022	+	Silent	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
EDC4	23644	broad.mit.edu	37	16	67915727	67915727	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
CTRL	1506	broad.mit.edu	37	16	67964633	67964633	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
WDR90	197335	broad.mit.edu	37	16	703802	703802	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
RHBDL1	9028	broad.mit.edu	37	16	726823	726823	+	Missense_Mutation	SNP	A	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZFHX3	463	broad.mit.edu	37	16	72923775	72923775	+	Silent	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
PKD1L2	114780	broad.mit.edu	37	16	81194452	81194452	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA0182	23199	broad.mit.edu	37	16	85701811	85701811	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
FANCA	2175	broad.mit.edu	37	16	89805349	89805349	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
UBB	7314	broad.mit.edu	37	17	16285788	16285788	+	Silent	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC144A	9720	broad.mit.edu	37	17	16623915	16623915	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
DRG2	1819	broad.mit.edu	37	17	18004839	18004839	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
DRG2	1819	broad.mit.edu	37	17	18005268	18005268	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC144B	284047	broad.mit.edu	37	17	18498091	18498091	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
SSH2	85464	broad.mit.edu	37	17	27975200	27975200	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
AMAC1	146861	broad.mit.edu	37	17	33520323	33520323	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
C17orf85	55421	broad.mit.edu	37	17	3721711	3721711	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ERBB2	2064	broad.mit.edu	37	17	37868216	37868216	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANKRD40	91369	broad.mit.edu	37	17	48776867	48776867	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF594	84622	broad.mit.edu	37	17	5085754	5085754	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
TEX14	56155	broad.mit.edu	37	17	56671019	56671019	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNH6	81033	broad.mit.edu	37	17	61611504	61611504	+	Silent	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCA10	10349	broad.mit.edu	37	17	67178946	67178946	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAI2	64446	broad.mit.edu	37	17	72297252	72297252	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7578449	7578449	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
EIF4A3	9775	broad.mit.edu	37	17	78118038	78118038	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
AZI1	22994	broad.mit.edu	37	17	79164797	79164797	+	Silent	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
AZI1	22994	broad.mit.edu	37	17	79164838	79164838	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
AZI1	22994	broad.mit.edu	37	17	79165108	79165108	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
AZI1	22994	broad.mit.edu	37	17	79165121	79165121	+	Silent	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
FASN	2194	broad.mit.edu	37	17	80053331	80053331	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF519	162655	broad.mit.edu	37	18	14105771	14105771	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ELP2	55250	broad.mit.edu	37	18	33722264	33722264	+	Silent	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA1632	57724	broad.mit.edu	37	18	43450556	43450556	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
TXNL1	9352	broad.mit.edu	37	18	54291545	54291545	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ICAM1	3383	broad.mit.edu	37	19	10394842	10394842	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
SMARCA4	6597	broad.mit.edu	37	19	11123726	11123726	+	Silent	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
CYP4F12	66002	broad.mit.edu	37	19	15794481	15794481	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
CYP4F2	8529	broad.mit.edu	37	19	16001184	16001184	+	Silent	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP8B3	148229	broad.mit.edu	37	19	1811504	1811504	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
GMIP	51291	broad.mit.edu	37	19	19741332	19741332	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF555	148254	broad.mit.edu	37	19	2853300	2853300	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
WDR62	284403	broad.mit.edu	37	19	36562497	36562497	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
WDR62	284403	broad.mit.edu	37	19	36574043	36574043	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACTN4	81	broad.mit.edu	37	19	39220017	39220017	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
SARS2	54938	broad.mit.edu	37	19	39421110	39421110	+	Silent	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
RTN2	6253	broad.mit.edu	37	19	45997499	45997499	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
CGB7	94027	broad.mit.edu	37	19	49558233	49558233	+	Silent	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
POLD1	5424	broad.mit.edu	37	19	50921177	50921177	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
SIGLEC8	27181	broad.mit.edu	37	19	51957508	51957508	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF28	7576	broad.mit.edu	37	19	53303274	53303274	+	Silent	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9067796	9067796	+	Silent	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
AGL	178	broad.mit.edu	37	1	100379088	100379088	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
AMY2A	279	broad.mit.edu	37	1	104160582	104160582	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
NUDT17	200035	broad.mit.edu	37	1	145586854	145586854	+	Silent	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
SV2A	9900	broad.mit.edu	37	1	149885327	149885327	+	Silent	SNP	G	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPRD2	23248	broad.mit.edu	37	1	150443912	150443912	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ECM1	1893	broad.mit.edu	37	1	150480725	150480725	+	Silent	SNP	T	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
SCNM1	79005	broad.mit.edu	37	1	151138954	151138954	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
HRNR	388697	broad.mit.edu	37	1	152188121	152188121	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
SMCP	4184	broad.mit.edu	37	1	152857174	152857174	+	Silent	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
GATAD2B	57459	broad.mit.edu	37	1	153800712	153800712	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
DCST1	149095	broad.mit.edu	37	1	155020372	155020372	+	Silent	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIM46	80128	broad.mit.edu	37	1	155152267	155152267	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
IQGAP3	128239	broad.mit.edu	37	1	156497752	156497752	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
DDR2	4921	broad.mit.edu	37	1	162725538	162725538	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBXO42	54455	broad.mit.edu	37	1	16577222	16577222	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBXO42	54455	broad.mit.edu	37	1	16577397	16577397	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
TPR	7175	broad.mit.edu	37	1	186304579	186304579	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYT2	127833	broad.mit.edu	37	1	202571539	202571539	+	Silent	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
CENPF	1063	broad.mit.edu	37	1	214794110	214794110	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
HHIPL2	79802	broad.mit.edu	37	1	222713588	222713588	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZBTB40	9923	broad.mit.edu	37	1	22828819	22828819	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZBTB40	9923	broad.mit.edu	37	1	22828866	22828866	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238048519	238048519	+	Silent	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF670	93474	broad.mit.edu	37	1	247200919	247200919	+	Silent	SNP	C	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR2G6	391211	broad.mit.edu	37	1	248685406	248685406	+	Silent	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
DHDDS	79947	broad.mit.edu	37	1	26772917	26772917	+	Missense_Mutation	SNP	A	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPB41	2035	broad.mit.edu	37	1	29438918	29438918	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
HMGB4	127540	broad.mit.edu	37	1	34329950	34329950	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
TIE1	7075	broad.mit.edu	37	1	43783580	43783580	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
KDM4A	9682	broad.mit.edu	37	1	44169940	44169940	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ELAVL4	1996	broad.mit.edu	37	1	50610766	50610766	+	Silent	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ORC1L	4998	broad.mit.edu	37	1	52863536	52863536	+	Splice_Site	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
GLIS1	148979	broad.mit.edu	37	1	54060249	54060249	+	Silent	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCSK9	255738	broad.mit.edu	37	1	55523842	55523842	+	Silent	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
TAS1R1	80835	broad.mit.edu	37	1	6639446	6639446	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAJC11	55735	broad.mit.edu	37	1	6697333	6697333	+	Silent	SNP	C	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCA4	24	broad.mit.edu	37	1	94476481	94476481	+	Silent	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGAP29	9411	broad.mit.edu	37	1	94674863	94674863	+	Silent	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
C20orf71	128861	broad.mit.edu	37	20	31805357	31805357	+	Silent	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPB41L1	2036	broad.mit.edu	37	20	34797659	34797659	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
SAMHD1	25939	broad.mit.edu	37	20	35521386	35521386	+	Silent	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
YWHAB	7529	broad.mit.edu	37	20	43535062	43535062	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
STAU1	6780	broad.mit.edu	37	20	47734529	47734529	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
NFATC2	4773	broad.mit.edu	37	20	50049280	50049280	+	Silent	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
CASS4	57091	broad.mit.edu	37	20	55027048	55027048	+	Silent	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
RTEL1	51750	broad.mit.edu	37	20	62324319	62324319	+	Silent	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
KRTAP13-1	140258	broad.mit.edu	37	21	31768802	31768802	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYNJ1	8867	broad.mit.edu	37	21	34012014	34012014	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
IL10RB	3588	broad.mit.edu	37	21	34640751	34640751	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
CLIC6	54102	broad.mit.edu	37	21	36079652	36079652	+	Silent	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTC3	7267	broad.mit.edu	37	21	38538204	38538204	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
DSCAM	1826	broad.mit.edu	37	21	41459119	41459119	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
MIF	4282	broad.mit.edu	37	22	24236667	24236667	+	Silent	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26422680	26422680	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC5A1	6523	broad.mit.edu	37	22	32480979	32480979	+	Silent	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYN3	8224	broad.mit.edu	37	22	32924939	32924939	+	Silent	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
APOL2	23780	broad.mit.edu	37	22	36624218	36624218	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
APOL2	23780	broad.mit.edu	37	22	36624296	36624296	+	Silent	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
IFT27	11020	broad.mit.edu	37	22	37163891	37163891	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
GGA1	26088	broad.mit.edu	37	22	38010268	38010268	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
XPNPEP3	63929	broad.mit.edu	37	22	41322359	41322359	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
EP300	2033	broad.mit.edu	37	22	41565561	41565561	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
MOV10L1	54456	broad.mit.edu	37	22	50546633	50546633	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
GREB1	9687	broad.mit.edu	37	2	11773124	11773124	+	Silent	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
MARCO	8685	broad.mit.edu	37	2	119750864	119750864	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
GLI2	2736	broad.mit.edu	37	2	121732608	121732608	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
MKI67IP	84365	broad.mit.edu	37	2	122486097	122486097	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRPF40A	55660	broad.mit.edu	37	2	153519641	153519641	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170127522	170127522	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR155	151556	broad.mit.edu	37	2	175335161	175335161	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAD51AP2	729475	broad.mit.edu	37	2	17698327	17698327	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTC30B	150737	broad.mit.edu	37	2	178416874	178416874	+	Silent	SNP	T	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTC30A	92104	broad.mit.edu	37	2	178483399	178483399	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196605504	196605504	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
PUM2	23369	broad.mit.edu	37	2	20511319	20511319	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
INO80D	54891	broad.mit.edu	37	2	206872011	206872011	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
CYP27A1	1593	broad.mit.edu	37	2	219679423	219679423	+	Silent	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
INHA	3623	broad.mit.edu	37	2	220439960	220439960	+	Silent	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
STK11IP	114790	broad.mit.edu	37	2	220466159	220466159	+	Silent	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
CRIM1	51232	broad.mit.edu	37	2	36744610	36744610	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
HAAO	23498	broad.mit.edu	37	2	42995022	42995022	+	Missense_Mutation	SNP	A	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLEKHH2	130271	broad.mit.edu	37	2	43939476	43939476	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPAS1	2034	broad.mit.edu	37	2	46608758	46608758	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPS27A	6233	broad.mit.edu	37	2	55461976	55461976	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
C1D	10438	broad.mit.edu	37	2	68273488	68273488	+	Missense_Mutation	SNP	A	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARID5A	10865	broad.mit.edu	37	2	97216890	97216890	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
FANCD2	2177	broad.mit.edu	37	3	10078013	10078013	+	Missense_Mutation	SNP	T	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
CD86	942	broad.mit.edu	37	3	121825321	121825321	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124380748	124380748	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
COPB2	9276	broad.mit.edu	37	3	139085601	139085601	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR149	344758	broad.mit.edu	37	3	154139250	154139250	+	Silent	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIM59	286827	broad.mit.edu	37	3	160156351	160156351	+	Silent	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLCL2	23228	broad.mit.edu	37	3	17053637	17053637	+	Silent	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
PIK3CA	5290	broad.mit.edu	37	3	178942564	178942564	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRANK1	9881	broad.mit.edu	37	3	36872833	36872833	+	Silent	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
GOLGA4	2803	broad.mit.edu	37	3	37376609	37376609	+	Silent	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ENTPD3	956	broad.mit.edu	37	3	40457435	40457435	+	Silent	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTH1R	5745	broad.mit.edu	37	3	46940250	46940250	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
SETD2	29072	broad.mit.edu	37	3	47144868	47144868	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ITPR1	3708	broad.mit.edu	37	3	4741570	4741570	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
EDEM1	9695	broad.mit.edu	37	3	5243458	5243458	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
BAP1	8314	broad.mit.edu	37	3	52442604	52442604	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
CADPS	8618	broad.mit.edu	37	3	62423823	62423823	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
IL17RC	84818	broad.mit.edu	37	3	9965627	9965627	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADH1B	125	broad.mit.edu	37	4	100235073	100235073	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
CTBP1	1487	broad.mit.edu	37	4	1206715	1206715	+	Missense_Mutation	SNP	A	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126337752	126337752	+	Silent	SNP	C	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAML3	55534	broad.mit.edu	37	4	140646958	140646958	+	Missense_Mutation	SNP	T	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADAM29	11086	broad.mit.edu	37	4	175897020	175897020	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
POLN	353497	broad.mit.edu	37	4	2130935	2130935	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR125	166647	broad.mit.edu	37	4	22449100	22449100	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
FRYL	285527	broad.mit.edu	37	4	48517148	48517148	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
NPFFR2	10886	broad.mit.edu	37	4	73013407	73013407	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPEF2	5470	broad.mit.edu	37	4	76794444	76794444	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABLIM2	84448	broad.mit.edu	37	4	7985051	7985051	+	Silent	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
MARCH6	10299	broad.mit.edu	37	5	10391786	10391786	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHB8	56128	broad.mit.edu	37	5	140558048	140558048	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC25A2	83884	broad.mit.edu	37	5	140683343	140683343	+	Silent	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHGB4	8641	broad.mit.edu	37	5	140769192	140769192	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC36A3	285641	broad.mit.edu	37	5	150666828	150666828	+	Silent	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
G3BP1	10146	broad.mit.edu	37	5	151179852	151179852	+	Silent	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
GABRA6	2559	broad.mit.edu	37	5	161116651	161116651	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC34A1	6569	broad.mit.edu	37	5	176815096	176815096	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
RUFY1	80230	broad.mit.edu	37	5	179023597	179023597	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
C1QTNF3	114899	broad.mit.edu	37	5	34043213	34043213	+	Silent	SNP	G	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
NIPBL	25836	broad.mit.edu	37	5	37020905	37020905	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
NNT	23530	broad.mit.edu	37	5	43650630	43650630	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
F2RL1	2150	broad.mit.edu	37	5	76128897	76128897	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
LYSMD3	116068	broad.mit.edu	37	5	89815090	89815090	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
MICAL1	64780	broad.mit.edu	37	6	109766413	109766413	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
MICAL1	64780	broad.mit.edu	37	6	109766439	109766439	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ROS1	6098	broad.mit.edu	37	6	117746802	117746802	+	Silent	SNP	A	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
HIVEP1	3096	broad.mit.edu	37	6	12122972	12122972	+	Missense_Mutation	SNP	T	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAP3K5	4217	broad.mit.edu	37	6	137041602	137041602	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLEKHG1	57480	broad.mit.edu	37	6	151152717	151152717	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152583252	152583252	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC17A4	10050	broad.mit.edu	37	6	25773814	25773814	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
BTN2A1	11120	broad.mit.edu	37	6	26459787	26459787	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
HIST1H2AG	8969	broad.mit.edu	37	6	27100942	27100942	+	Missense_Mutation	SNP	T	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
VARS2	57176	broad.mit.edu	37	6	30882669	30882669	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
RNF5	6048	broad.mit.edu	37	6	32147331	32147331	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
B3GALT4	8705	broad.mit.edu	37	6	33246064	33246064	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38810631	38810631	+	Silent	SNP	T	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
TBCC	6903	broad.mit.edu	37	6	42712930	42712930	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
TBCC	6903	broad.mit.edu	37	6	42713073	42713073	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
TBCC	6903	broad.mit.edu	37	6	42713214	42713214	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
RCAN2	10231	broad.mit.edu	37	6	46214588	46214588	+	Silent	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPP40	10799	broad.mit.edu	37	6	4996532	4996532	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
RREB1	6239	broad.mit.edu	37	6	7231959	7231959	+	Silent	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
CASP8AP2	9994	broad.mit.edu	37	6	90576496	90576496	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
RASA4	10156	broad.mit.edu	37	7	102246348	102246348	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103183210	103183210	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
NUP205	23165	broad.mit.edu	37	7	135261759	135261759	+	Silent	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
NUP205	23165	broad.mit.edu	37	7	135263632	135263632	+	Silent	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
NUP205	23165	broad.mit.edu	37	7	135302356	135302356	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF786	136051	broad.mit.edu	37	7	148769075	148769075	+	Silent	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
GIMAP2	26157	broad.mit.edu	37	7	150390122	150390122	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
UBE3C	9690	broad.mit.edu	37	7	157049683	157049683	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ITGB8	3696	broad.mit.edu	37	7	20438615	20438615	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
KLHL7	55975	broad.mit.edu	37	7	23180423	23180423	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
IQCE	23288	broad.mit.edu	37	7	2632715	2632715	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
BMPER	168667	broad.mit.edu	37	7	34192756	34192756	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDK13	8621	broad.mit.edu	37	7	40134032	40134032	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43484701	43484701	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPIA	5478	broad.mit.edu	37	7	44839364	44839364	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
RNF216	54476	broad.mit.edu	37	7	5781044	5781044	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
DAGLB	221955	broad.mit.edu	37	7	6476128	6476128	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
NSUN5	55695	broad.mit.edu	37	7	72721626	72721626	+	Silent	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
POM121C	100101267	broad.mit.edu	37	7	75048154	75048154	+	Silent	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81388061	81388061	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
AKAP9	10142	broad.mit.edu	37	7	91603155	91603155	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
TFPI2	7980	broad.mit.edu	37	7	93516176	93516176	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACN9	57001	broad.mit.edu	37	7	96747140	96747140	+	Silent	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
TAF6	6878	broad.mit.edu	37	7	99710524	99710524	+	Silent	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
FZD6	8323	broad.mit.edu	37	8	104337581	104337581	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10468223	10468223	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZHX2	22882	broad.mit.edu	37	8	123964977	123964977	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATAD2	29028	broad.mit.edu	37	8	124335198	124335198	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATAD2	29028	broad.mit.edu	37	8	124346190	124346190	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
MTSS1	9788	broad.mit.edu	37	8	125568500	125568500	+	Silent	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
NSMCE2	286053	broad.mit.edu	37	8	126114679	126114679	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
NSMCE2	286053	broad.mit.edu	37	8	126114697	126114697	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139380150	139380150	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGAP39	80728	broad.mit.edu	37	8	145806415	145806415	+	Silent	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDLIM2	64236	broad.mit.edu	37	8	22442667	22442667	+	Silent	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ST18	9705	broad.mit.edu	37	8	53084883	53084883	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ST18	9705	broad.mit.edu	37	8	53084982	53084982	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDE7A	5150	broad.mit.edu	37	8	66659966	66659966	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	68981310	68981310	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
WWP1	11059	broad.mit.edu	37	8	87439902	87439902	+	Missense_Mutation	SNP	A	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
STOM	2040	broad.mit.edu	37	9	124110421	124110421	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
VAV2	7410	broad.mit.edu	37	9	136804249	136804249	+	Silent	SNP	G	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL5A1	1289	broad.mit.edu	37	9	137593102	137593102	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNT1	57582	broad.mit.edu	37	9	138645821	138645821	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
EHMT1	79813	broad.mit.edu	37	9	140707937	140707937	+	Silent	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA1797	54914	broad.mit.edu	37	9	20874759	20874759	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
SMARCA2	6595	broad.mit.edu	37	9	2110409	2110409	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
UNC13B	10497	broad.mit.edu	37	9	35386232	35386232	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
GDA	9615	broad.mit.edu	37	9	74764526	74764526	+	Silent	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
TBC1D8B	54885	broad.mit.edu	37	X	106082551	106082551	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATXN3L	92552	broad.mit.edu	37	X	13337636	13337636	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCD1	215	broad.mit.edu	37	X	152991184	152991184	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
CXorf23	256643	broad.mit.edu	37	X	19947930	19947930	+	Silent	SNP	G	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
DGKK	139189	broad.mit.edu	37	X	50121635	50121635	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAGED2	10916	broad.mit.edu	37	X	54841756	54841756	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZC4H2	55906	broad.mit.edu	37	X	64139077	64139077	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDH19	57526	broad.mit.edu	37	X	99663458	99663458	+	Silent	SNP	C	T	T			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
BAZ2A	11176	broad.mit.edu	37	12	57009177	57009178	+	Frame_Shift_Ins	INS	-	C	C			TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRR21	643905	broad.mit.edu	37	2	240982244	240982257	+	Frame_Shift_Del	DEL	TGGATGAAGGGCCA	-	-	rs75044548	by1000genomes	TCGA-DK-A1A5-01	TCGA-DK-A1A5-01									Somatic	Phase_I	Capture				Illumina GAIIx
